format-version: 1.0 date: 10:07:2009 08:47 saved-by: Maria auto-generated-by: OBO-Edit 1.101 subsetdef: AspGD "APO terms in use at AspGD" subsetdef: SGD "APO terms in use at SGD" default-namespace: ascomycete_phenotype_ontology [Term] id: APO:0000001 name: qualifier namespace: qualifier alt_id: YPO:0000001 def: "The direction of change in the mutant compared to wild type." [SGD:curators] subset: AspGD subset: SGD [Term] id: APO:0000002 name: abnormal namespace: qualifier alt_id: YPO:0000002 def: "The observed phenotype is detectably different from that in the wild type." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000001 ! qualifier [Term] id: APO:0000003 name: decreased namespace: qualifier alt_id: YPO:0000003 def: "The observed feature is decreased compared to that in the wild type (slower, weaker, lower, smaller, etc.)." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000002 ! abnormal [Term] id: APO:0000004 name: increased namespace: qualifier alt_id: YPO:0000004 def: "The observed feature is increased compared to that in the wild type (faster, stronger, higher, larger, etc.)." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000002 ! abnormal [Term] id: APO:0000005 name: absent namespace: qualifier alt_id: YPO:0000005 def: "The observed feature is not detectable in the mutant." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000003 ! decreased [Term] id: APO:0000006 name: mutant_type namespace: mutant_type alt_id: YPO:0000006 def: "A description of the effect of the mutation on the gene product function." [SGD:curators] subset: AspGD subset: SGD [Term] id: APO:0000007 name: misexpression namespace: mutant_type alt_id: YPO:0000007 def: "The mutation results in expression of the gene product at a developmental stage, in a cell type, or at a subcellular location different from that at which the wild-type gene is expressed." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000008 name: overexpression namespace: mutant_type alt_id: YPO:0000008 def: "The mutation causes expression of the otherwise normal gene product to higher levels than wild-type." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000009 name: activation namespace: mutant_type alt_id: YPO:0000009 def: "The mutation increases the normal activity of a gene product." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000010 name: gain of function namespace: mutant_type alt_id: YPO:0000010 def: "The mutation confers a new activity on the gene product." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000011 name: null namespace: mutant_type alt_id: YPO:0000011 def: "The mutation abolishes completely the function of the gene product." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "loss of function" [SGD:RSN] is_a: APO:0000006 ! mutant_type [Term] id: APO:0000012 name: repressible namespace: mutant_type alt_id: YPO:0000012 def: "The mutation leads to reduction of levels of the gene product, often through the use of a repressible promoter." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "depletion" [SGD:RSN] is_a: APO:0000006 ! mutant_type [Term] id: APO:0000013 name: reduction of function namespace: mutant_type alt_id: YPO:0000013 def: "The mutation reduces the activity of the gene product." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000014 name: conditional namespace: mutant_type alt_id: YPO:0000014 def: "The activity of the gene product is normal under some conditions and altered under others." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000015 name: unspecified namespace: mutant_type alt_id: YPO:0000015 def: "The mutation type is not specified in the reference." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000016 name: not yet recorded namespace: mutant_type alt_id: YPO:0000016 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because there was overlap with another term unspecified. The term unspecified will be used in cases where a more appropriate descriptor cannot be identified. subset: AspGD subset: SGD is_obsolete: true [Term] id: APO:0000017 name: observable namespace: observable alt_id: YPO:0000017 def: "Features of ascomycete fungal cells, cultures, or colonies that can be detected, observed, measured, or monitored." [SGD:curators] subset: AspGD subset: SGD [Term] id: APO:0000018 name: experiment_type namespace: experiment_type alt_id: YPO:0000018 def: "A description of the experimental approach." [SGD:curators] subset: AspGD subset: SGD [Term] id: APO:0000019 name: systematic null mutation set namespace: experiment_type alt_id: YPO:0000019 def: "OBSOLETE. Robotic generation and analysis of large-scale, genome-wide knockout sets." [SGD:RSN] comment: This term was made obsolete as it is a compound term containing information on the both the scope of the experiment as well as the mutant type. subset: AspGD subset: SGD is_obsolete: true replaced_by: APO:0000011 replaced_by: APO:0000235 [Term] id: APO:0000020 name: classical genetics namespace: experiment_type alt_id: YPO:0000020 def: "Phenotypic analysis of one or a few mutant strains in small-scale, focused experiments that do not require knowledge of the entire genome sequence." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000192 ! phenotype assays [Term] id: APO:0000021 name: competitive growth namespace: experiment_type alt_id: YPO:0000021 def: "Quantitative data on survival of a mutant strain, obtained in large scale experiments where mutants are grown together with wild type or other mutants for many generations." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000114 ! large-scale survey [Term] id: APO:0000022 name: protein activity namespace: observable alt_id: YPO:0000022 def: "The enzymatic or other activity of a protein." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000023 name: development namespace: observable alt_id: YPO:0000023 def: "Developmental processes." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000017 ! observable [Term] id: APO:0000024 name: budding namespace: observable alt_id: YPO:0000024 def: "The formation of a bud, which develops into a daughter cell during asexual reproduction." [SGD:mcc] subset: SGD is_a: APO:0000023 ! development [Term] id: APO:0000025 name: axial budding pattern namespace: observable alt_id: YPO:0000025 def: "Localization of the newly emerging bud near the site of the previous bud." [SGD:RSN] subset: SGD related_synonym: "haploid budding pattern" [SGD:RSN] is_a: APO:0000200 ! budding pattern [Term] id: APO:0000026 name: bipolar budding pattern namespace: observable alt_id: YPO:0000026 def: "Localization of the emerging bud at the cell pole opposite the previous bud site." [SGD:RSN] subset: SGD related_synonym: "diploid budding pattern" [SGD:RSN] is_a: APO:0000200 ! budding pattern [Term] id: APO:0000027 name: filamentous growth namespace: observable alt_id: YPO:0000027 def: "Growth in a threadlike, filamentous shape." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000023 ! development [Term] id: APO:0000028 name: haploid invasive growth namespace: observable alt_id: YPO:0000028 def: "Growth of haploid budding cells under certain conditions such as glucose limitation, in which they retain the typical axial budding pattern of haploids, but become elongated and fail to separate after division; during growth on a solid substrate, this results in penetration of cells into the agar medium." [SGD:mcc] subset: SGD is_a: APO:0000027 ! filamentous growth [Term] id: APO:0000029 name: pseudohyphal growth namespace: observable alt_id: YPO:0000029 def: "Growth in a pattern that occurs in conditions of nitrogen limitation and abundant fermentable carbon source. Cells become elongated, switch to a unipolar budding pattern, remain physically attached to each other, and invade the growth substrate." [SGD:krc] subset: SGD is_a: APO:0000027 ! filamentous growth [Term] id: APO:0000030 name: lifespan namespace: observable alt_id: YPO:0000030 def: "The duration of the life of an individual organism." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000023 ! development [Term] id: APO:0000031 name: sexual cycle namespace: observable alt_id: YPO:0000031 def: "The process of sexual reproduction." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000023 ! development [Term] id: APO:0000032 name: mating response namespace: observable alt_id: YPO:0000032 def: "Processes during the interaction between organisms leading to mating." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000031 ! sexual cycle [Term] id: APO:0000033 name: cell fusion namespace: observable alt_id: YPO:0000033 def: "The fusion of individual cells from each partner during mating." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000032 ! mating response [Term] id: APO:0000034 name: mating efficiency namespace: observable alt_id: YPO:0000034 subset: AspGD subset: SGD is_a: APO:0000032 ! mating response [Term] id: APO:0000035 name: nuclear fusion during mating namespace: observable alt_id: YPO:0000035 subset: AspGD subset: SGD is_a: APO:0000032 ! mating response [Term] id: APO:0000036 name: pheromone production namespace: observable alt_id: YPO:0000036 subset: AspGD subset: SGD is_a: APO:0000032 ! mating response [Term] id: APO:0000037 name: pheromone sensitivity namespace: observable alt_id: YPO:0000037 subset: AspGD subset: SGD is_a: APO:0000032 ! mating response [Term] id: APO:0000038 name: shmoo formation namespace: observable alt_id: YPO:0000038 subset: SGD is_a: APO:0000032 ! mating response [Term] id: APO:0000039 name: meiosis namespace: observable alt_id: YPO:0000039 subset: AspGD subset: SGD is_a: APO:0000031 ! sexual cycle [Term] id: APO:0000040 name: meiotic recombination namespace: observable alt_id: YPO:0000040 subset: AspGD subset: SGD is_a: APO:0000039 ! meiosis [Term] id: APO:0000041 name: sporulation namespace: observable alt_id: YPO:0000041 subset: AspGD subset: SGD is_a: APO:0000031 ! sexual cycle [Term] id: APO:0000042 name: spore germination namespace: observable alt_id: YPO:0000042 def: "The production of viable cells arising from sexual spores." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000041 ! sporulation [Term] id: APO:0000043 name: spore wall formation namespace: observable alt_id: YPO:0000043 subset: AspGD subset: SGD is_a: APO:0000041 ! sporulation [Term] id: APO:0000044 name: sporulation efficiency namespace: observable alt_id: YPO:0000044 subset: AspGD subset: SGD is_a: APO:0000041 ! sporulation [Term] id: APO:0000045 name: sterile namespace: observable alt_id: YPO:0000045 subset: AspGD subset: SGD is_a: APO:0000031 ! sexual cycle [Term] id: APO:0000046 name: silencing namespace: observable alt_id: YPO:0000046 subset: AspGD subset: SGD is_a: APO:0000143 ! chromosome/plasmid maintenance [Term] id: APO:0000047 name: transposable element transposition namespace: observable alt_id: YPO:0000047 subset: AspGD subset: SGD is_a: APO:0000143 ! chromosome/plasmid maintenance [Term] id: APO:0000048 name: virulence namespace: observable alt_id: YPO:0000048 subset: AspGD subset: SGD is_a: APO:0000023 ! development [Term] id: APO:0000049 name: morphology namespace: observable alt_id: YPO:0000049 def: "The size or shape of subcellular structures, cells, or multicellular structures." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000017 ! observable [Term] id: APO:0000050 name: cellular morphology namespace: observable alt_id: YPO:0000050 subset: AspGD subset: SGD is_a: APO:0000049 ! morphology [Term] id: APO:0000051 name: cell shape namespace: observable alt_id: YPO:0000051 subset: AspGD subset: SGD is_a: APO:0000050 ! cellular morphology [Term] id: APO:0000052 name: cell size namespace: observable alt_id: YPO:0000052 subset: AspGD subset: SGD is_a: APO:0000050 ! cellular morphology [Term] id: APO:0000053 name: cell wall morphology namespace: observable alt_id: YPO:0000053 subset: AspGD subset: SGD is_a: APO:0000226 ! subcellular morphology [Term] id: APO:0000054 name: cytoskeleton morphology namespace: observable alt_id: YPO:0000054 subset: AspGD subset: SGD is_a: APO:0000226 ! subcellular morphology [Term] id: APO:0000055 name: mitochondrial morphology namespace: observable alt_id: YPO:0000055 subset: AspGD subset: SGD is_a: APO:0000226 ! subcellular morphology [Term] id: APO:0000056 name: bud neck morphology namespace: observable alt_id: YPO:0000056 subset: SGD is_a: APO:0000050 ! cellular morphology [Term] id: APO:0000057 name: nuclear morphology namespace: observable alt_id: YPO:0000057 subset: AspGD subset: SGD is_a: APO:0000303 ! endomembrane system morphology [Term] id: APO:0000058 name: peroxisomal morphology namespace: observable alt_id: YPO:0000058 subset: AspGD subset: SGD is_a: APO:0000303 ! endomembrane system morphology [Term] id: APO:0000059 name: vacuolar morphology namespace: observable alt_id: YPO:0000059 subset: AspGD subset: SGD is_a: APO:0000303 ! endomembrane system morphology [Term] id: APO:0000060 name: colony appearance namespace: observable alt_id: YPO:0000060 subset: AspGD subset: SGD is_a: APO:0000158 ! culture appearance [Term] id: APO:0000061 name: colony color namespace: observable alt_id: YPO:0000061 subset: AspGD subset: SGD is_a: APO:0000060 ! colony appearance [Term] id: APO:0000062 name: colony shape namespace: observable alt_id: YPO:0000062 subset: AspGD subset: SGD is_a: APO:0000060 ! colony appearance [Term] id: APO:0000063 name: colony size namespace: observable alt_id: YPO:0000063 subset: AspGD subset: SGD is_a: APO:0000060 ! colony appearance [Term] id: APO:0000064 name: liquid culture appearance namespace: observable alt_id: YPO:0000064 subset: AspGD subset: SGD is_a: APO:0000158 ! culture appearance [Term] id: APO:0000065 name: flocculation namespace: observable alt_id: YPO:0000065 subset: AspGD subset: SGD is_a: APO:0000064 ! liquid culture appearance [Term] id: APO:0000066 name: cellular processes namespace: observable alt_id: YPO:0000066 def: "Processes occurring at the cellular level." [AspGD:mcc] subset: AspGD subset: SGD is_a: APO:0000017 ! observable [Term] id: APO:0000067 name: cell cycle arrest in G1 phase namespace: observable alt_id: YPO:0000067 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000255 [Term] id: APO:0000068 name: cell cycle arrest at G2 phase namespace: observable alt_id: YPO:0000068 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000254 [Term] id: APO:0000069 name: cell cycle arrest at START namespace: observable alt_id: YPO:0000069 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000256 [Term] id: APO:0000070 name: cell cycle arrest namespace: observable alt_id: YPO:0000070 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000253 [Term] id: APO:0000071 name: cytokinesis namespace: observable alt_id: YPO:0000071 subset: AspGD subset: SGD is_a: APO:0000072 ! mitotic cell cycle [Term] id: APO:0000072 name: mitotic cell cycle namespace: observable alt_id: YPO:0000072 subset: AspGD subset: SGD is_a: APO:0000066 ! cellular processes [Term] id: APO:0000073 name: intracellular transport namespace: observable alt_id: YPO:0000073 def: "Transport of substances within cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000066 ! cellular processes [Term] id: APO:0000074 name: autophagy namespace: observable alt_id: YPO:0000074 def: "The delivery and degradation of autophagy markers to the vacuole via the autophagic pathway." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000073 ! intracellular transport [Term] id: APO:0000075 name: endocytosis namespace: observable alt_id: YPO:0000075 def: "The uptake and delivery of the specified endocytosis marker." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000073 ! intracellular transport [Term] id: APO:0000076 name: mitochondrial transport namespace: observable alt_id: YPO:0000076 subset: AspGD subset: SGD is_a: APO:0000129 ! protein transport [Term] id: APO:0000077 name: nuclear transport namespace: observable alt_id: YPO:0000077 subset: AspGD subset: SGD is_a: APO:0000129 ! protein transport [Term] id: APO:0000078 name: protein secretion namespace: observable alt_id: YPO:0000078 subset: AspGD subset: SGD is_a: APO:0000129 ! protein transport [Term] id: APO:0000079 name: vacuolar transport namespace: observable alt_id: YPO:0000079 subset: AspGD subset: SGD is_a: APO:0000129 ! protein transport [Term] id: APO:0000080 name: stress resistance namespace: observable alt_id: YPO:0000080 subset: AspGD subset: SGD is_a: APO:0000066 ! cellular processes [Term] id: APO:0000081 name: killer toxin resistance namespace: observable alt_id: YPO:0000081 subset: AspGD subset: SGD is_a: APO:0000215 ! toxin resistance [Term] id: APO:0000082 name: osmotic stress resistance namespace: observable alt_id: YPO:0000082 subset: AspGD subset: SGD is_a: APO:0000087 ! resistance to chemicals [Term] id: APO:0000083 name: oxidative stress resistance namespace: observable alt_id: YPO:0000083 subset: AspGD subset: SGD is_a: APO:0000087 ! resistance to chemicals [Term] id: APO:0000084 name: radiation resistance namespace: observable alt_id: YPO:0000084 subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000085 name: UV resistance namespace: observable alt_id: YPO:0000085 subset: AspGD subset: SGD is_a: APO:0000194 ! ionizing radiation resistance [Term] id: APO:0000086 name: X ray resistance namespace: observable alt_id: YPO:0000086 subset: AspGD subset: SGD is_a: APO:0000194 ! ionizing radiation resistance [Term] id: APO:0000087 name: resistance to chemicals namespace: observable alt_id: YPO:0000087 subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000088 name: drug resistance namespace: observable alt_id: YPO:0000088 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete, as resistance to chemicals was deemed a better choice. subset: AspGD subset: SGD is_obsolete: true replaced_by: APO:0000087 [Term] id: APO:0000089 name: budding index namespace: observable alt_id: YPO:0000089 def: "The percentage or fraction of budded cells in a population." [SGD:curators] subset: SGD is_a: APO:0000024 ! budding [Term] id: APO:0000090 name: metal resistance namespace: observable alt_id: YPO:0000090 subset: AspGD subset: SGD is_a: APO:0000087 ! resistance to chemicals [Term] id: APO:0000091 name: starvation resistance namespace: observable alt_id: YPO:0000091 subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000092 name: temperature sensitive growth namespace: observable alt_id: YPO:0000092 subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000093 name: thermotolerance namespace: observable alt_id: YPO:0000093 subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000094 name: metabolism and growth namespace: observable alt_id: YPO:0000094 def: "Processes relating to metabolism and growth." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000017 ! observable [Term] id: APO:0000095 name: chemical compound accumulation namespace: observable alt_id: YPO:0000095 def: "The production and/or storage of a specified chemical compound." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000096 name: nutrient utilization namespace: observable alt_id: YPO:0000096 subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000097 name: auxotrophy namespace: observable alt_id: YPO:0000097 subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000098 name: utilization of carbon source namespace: observable alt_id: YPO:0000098 def: "The ability to utilize the specified compound as a carbon source." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000099 name: utilization of nitrogen source namespace: observable alt_id: YPO:0000099 def: "The ability to utilize the specified compound as a nitrogen source." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000100 name: nutrient uptake namespace: observable alt_id: YPO:0000100 subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000101 name: fermentative metabolism namespace: observable alt_id: YPO:0000101 def: "Growth with energy derived from fermentation; growth on a fermentable carbon source." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "fermentable carbon source utilization" [SGD:RSN] is_a: APO:0000098 ! utilization of carbon source [Term] id: APO:0000102 name: respiratory metabolism namespace: observable alt_id: YPO:0000102 def: "Growth with energy derived from respiration; growth on a non-fermentable carbon source." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "non-fermentable carbon source utilization" [SGD:RSN] is_a: APO:0000098 ! utilization of carbon source [Term] id: APO:0000103 name: respiratory growth rate namespace: observable alt_id: YPO:0000103 subset: AspGD subset: SGD is_obsolete: true consider: APO:0000309 [Term] id: APO:0000104 name: mitochondrial rho- mutation frequency namespace: observable alt_id: YPO:0000104 subset: AspGD subset: SGD is_a: APO:0000105 ! mitochondrial genome maintenance [Term] id: APO:0000105 name: mitochondrial genome maintenance namespace: observable alt_id: YPO:0000105 subset: AspGD subset: SGD is_a: APO:0000102 ! respiratory metabolism [Term] id: APO:0000106 name: vegetative growth namespace: observable alt_id: YPO:0000106 def: "Growth under standard culture conditions (liquid or solid media)." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000107 name: growth rate in exponential phase namespace: observable alt_id: YPO:0000107 def: "Growth rate in liquid culture during the exponential phase." [SGD:curators] subset: AspGD subset: SGD is_obsolete: true consider: APO:0000310 [Term] id: APO:0000108 name: growth rate in post-diauxic phase namespace: observable alt_id: YPO:0000108 def: "Growth rate in liquid culture during the post-diauxic phase." [SGD:curators] subset: AspGD subset: SGD is_obsolete: true consider: APO:0000311 [Term] id: APO:0000109 name: survival rate in stationary phase namespace: observable alt_id: YPO:0000109 def: "The rate of survival in liquid stationary phase cultures." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000106 ! vegetative growth [Term] id: APO:0000110 name: competitive fitness namespace: observable alt_id: YPO:0000110 def: "The ability of a mutant strain to grow or survive under conditions of direct competition with wild type or other mutants." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000216 ! fitness [Term] id: APO:0000111 name: viability namespace: observable alt_id: YPO:0000111 def: "The proportion of cells in a sample that are viable, i.e. able to form colonies. Often measured by spotting aliquots of a dilution series on a plate." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000216 ! fitness [Term] id: APO:0000112 name: inviable namespace: observable alt_id: YPO:0000112 def: "The inability to grow under standard growth conditions. For S. cerevisiae, this means that visible colonies are not formed from single cells on complete glucose medium (YPD) plates at 30 deg C." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000217 ! essentiality [Term] id: APO:0000113 name: viable namespace: observable alt_id: YPO:0000113 def: "The ability to grow under standard growth conditions. For S. cerevisiae, this means that visible colonies are formed from single cells on complete glucose medium (YPD) plates at 30 deg C." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000217 ! essentiality [Term] id: APO:0000114 name: large-scale survey namespace: experiment_type alt_id: YPO:0000114 def: "Generation and analysis of genome-wide sets of mutants that typically utilizes robotic methods." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000192 ! phenotype assays [Term] id: APO:0000115 name: other method namespace: experiment_type alt_id: YPO:0000115 def: "OBSOLETE. This term defined as 'novel techniques' has been obsoleted as it was a remnant of the original mutant types that has not been used." [SGD:curators] comment: This term was made obsolete because it was a remnant of the original mutant types that has never been used. We will replace this using either a classical genetics of large-scale survey experiement type. subset: AspGD subset: SGD is_obsolete: true [Term] id: APO:0000116 name: other mutant type namespace: mutant_type alt_id: YPO:0000116 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it does not fit within the new descriptor terminology. In cases where a specific descriptor term cannot be identified use the term unspecified. subset: AspGD subset: SGD is_obsolete: true [Term] id: APO:0000117 name: normal namespace: qualifier alt_id: YPO:0000117 def: "The observed phenotype shows no detectable difference between the mutant and the wild type." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "wild type" [SGD:RSN] is_a: APO:0000001 ! qualifier [Term] id: APO:0000118 name: nuclear position namespace: observable alt_id: YPO:0000118 def: "The location of the nucleus or nuclei within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000119 name: size of nucleus namespace: observable alt_id: YPO:0000119 subset: AspGD subset: SGD is_a: APO:0000057 ! nuclear morphology [Term] id: APO:0000120 name: actin cytoskeleton morphology namespace: observable alt_id: YPO:0000120 subset: AspGD subset: SGD is_a: APO:0000054 ! cytoskeleton morphology [Term] id: APO:0000121 name: bud direction namespace: observable alt_id: YPO:0000121 subset: SGD is_a: APO:0000024 ! budding [Term] id: APO:0000122 name: cell cycle arrest in M phase namespace: observable alt_id: YPO:0000122 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000258 [Term] id: APO:0000123 name: recovery from pheromone-induced cell cycle arrest namespace: observable alt_id: YPO:0000123 subset: AspGD subset: SGD is_a: APO:0000037 ! pheromone sensitivity [Term] id: APO:0000124 name: pheromone-induced cell cycle arrest namespace: observable alt_id: YPO:0000124 subset: AspGD subset: SGD is_a: APO:0000037 ! pheromone sensitivity [Term] id: APO:0000125 name: utilization of phosphorus source namespace: observable alt_id: YPO:0000125 def: "The ability to utilize the specified compound as a source of phosphorus." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000126 name: nuclear import namespace: observable alt_id: YPO:0000126 subset: AspGD subset: SGD is_a: APO:0000077 ! nuclear transport [Term] id: APO:0000127 name: nuclear export namespace: observable alt_id: YPO:0000127 subset: AspGD subset: SGD is_a: APO:0000077 ! nuclear transport [Term] id: APO:0000128 name: peroxisomal transport namespace: observable alt_id: YPO:0000128 subset: AspGD subset: SGD is_a: APO:0000129 ! protein transport [Term] id: APO:0000129 name: protein transport namespace: observable alt_id: YPO:0000129 def: "Localization of specified proteins and their delivery." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "protein localization" [SGD:RSN] related_synonym: "protein targeting" [SGD:RSN] is_a: APO:0000073 ! intracellular transport [Term] id: APO:0000130 name: small molecule transport namespace: observable alt_id: YPO:0000130 subset: AspGD subset: SGD is_a: APO:0000073 ! intracellular transport [Term] id: APO:0000131 name: protein/peptide modification namespace: observable alt_id: YPO:0000131 def: "The covalent modification of a specified protein." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000132 name: RNA localization namespace: observable alt_id: YPO:0000132 subset: AspGD subset: SGD is_a: APO:0000073 ! intracellular transport [Term] id: APO:0000133 name: cell cycle arrest in metaphase namespace: observable alt_id: YPO:0000133 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000264 [Term] id: APO:0000134 name: cell cycle arrest at the metaphase - anaphase transition namespace: observable alt_id: YPO:0000134 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000259 [Term] id: APO:0000135 name: cell cycle arrest in anaphase namespace: observable alt_id: YPO:0000135 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000260 [Term] id: APO:0000136 name: cell cycle arrest in early anaphase namespace: observable alt_id: YPO:0000136 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000261 [Term] id: APO:0000137 name: cell cycle arrest in mid anaphase namespace: observable alt_id: YPO:0000137 def: "OBSOLETE. This term was not defined before being made obsolete." [RSN:SGD] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000262 [Term] id: APO:0000138 name: cell cycle arrest in late anaphase namespace: observable alt_id: YPO:0000138 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000263 [Term] id: APO:0000139 name: cell cycle arrest in telophase namespace: observable alt_id: YPO:0000139 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000265 [Term] id: APO:0000140 name: cell cycle arrest in G0 (stationary phase) namespace: observable alt_id: YPO:0000140 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000267 consider: APO:0000268 [Term] id: APO:0000141 name: critical cell size at START (G1 cell-size checkpoint) namespace: observable alt_id: YPO:0000141 subset: AspGD subset: SGD is_a: APO:0000052 ! cell size [Term] id: APO:0000142 name: critical cell size at G2/M (cryptic G2/M cell size checkpoint) namespace: observable alt_id: YPO:0000142 subset: AspGD subset: SGD is_a: APO:0000052 ! cell size [Term] id: APO:0000143 name: chromosome/plasmid maintenance namespace: observable alt_id: YPO:0000143 def: "The stable maintenance of chromosomes or plasmids." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000066 ! cellular processes [Term] id: APO:0000144 name: telomere length namespace: observable alt_id: YPO:0000144 def: "The average length of telomeres." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000143 ! chromosome/plasmid maintenance [Term] id: APO:0000145 name: oxidative phosphorylation namespace: observable alt_id: YPO:0000145 subset: AspGD subset: SGD related_synonym: "respiration" [SGD:RSN] is_a: APO:0000102 ! respiratory metabolism [Term] id: APO:0000146 name: systematic repressible mutation set namespace: experiment_type alt_id: YPO:0000146 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete as it is a compound term containing information on both the scope of the experiment as well as the repressible nature of the mutant_type. subset: AspGD subset: SGD is_obsolete: true replaced_by: APO:0000012 replaced_by: APO:0000235 [Term] id: APO:0000147 name: heat sensitivity namespace: observable alt_id: YPO:0000147 subset: AspGD subset: SGD related_synonym: "temperature sensitivity" [SGD:RSN] is_a: APO:0000092 ! temperature sensitive growth [Term] id: APO:0000148 name: cold sensitivity namespace: observable alt_id: YPO:0000148 subset: AspGD subset: SGD is_a: APO:0000092 ! temperature sensitive growth [Term] id: APO:0000149 name: protein/peptide accumulation namespace: observable alt_id: YPO:0000149 def: "Abundance of a specified peptide/protein; production to a certain level." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "protein/peptide abundance" [SGD:RSN] is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000150 name: null homozygous diploid namespace: mutant_type alt_id: YPO:0000150 def: "OBSOLETE. Mutation abolishes function of both alleles of the gene in a diploid strain." [SGD:RSN] comment: This term was made obsolete because it is a compound term, with plody related information captured through the experiment_type and null captured as a mutant_type. subset: AspGD subset: SGD is_obsolete: true replaced_by: APO:0000011 [Term] id: APO:0000151 name: null heterozygous diploid namespace: mutant_type alt_id: YPO:0000151 def: "OBSOLETE. Mutation abolishes function of one allele of the gene in a diploid strain." [SGD:RSN] comment: This term was made obsolete because it is a compound term, with plody related information captured through the experiment_type and null captured as a mutant_type. subset: AspGD subset: SGD is_obsolete: true replaced_by: APO:0000011 [Term] id: APO:0000152 name: haploinsufficient namespace: observable alt_id: YPO:0000152 def: "The phenotype is detectable in a heterozygous diploid." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000216 ! fitness [Term] id: APO:0000153 name: petite namespace: observable alt_id: YPO:0000153 def: "The formation of smaller than wild-type colonies on fermentable carbon sources (e.g., glucose), due to a respiratory defect. The respiratory defect could result from mutation or loss of the mitochondrial genome, or from a nuclear mutation affecting respiration. The fermentation of glucose produces ethanol, which is metabolized by the respiratory pathway in wild-type cells and contributes to colony size; respiratory-deficient mutants are unable to utilize this ethanol." [PMID:9301019, SGD:mcc] subset: SGD is_a: APO:0000102 ! respiratory metabolism [Term] id: APO:0000154 name: petite-negative namespace: observable alt_id: YPO:0000154 def: "The petite-negative phenotype arises from mutation in a nuclear gene that is not essential in an otherwise wild-type strain with an intact mitochondrial genome, but becomes essential in strains lacking the mitochondrial genome, referred to as rho- or rho0. Petite-negative strains cannot grow on fermentable carbon sources (e.g., glucose) in the absence of an intact mitochondrial genome. This phenotype is often assayed as the inability grow in the presence of ethidium bromide, which causes the loss of the mitochondrial genome." [PMID:16267274, SGD:mcc] subset: SGD is_a: APO:0000102 ! respiratory metabolism [Term] id: APO:0000155 name: apoptosis namespace: observable alt_id: YPO:0000155 def: "An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process." [PMID:15556039, PMID:18452540, PMID:18500447, PMID:18782613, PMID:19416362, SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000312 ! cell death [Term] id: APO:0000156 name: fermentative growth rate namespace: observable alt_id: YPO:0000156 def: "The rate of growth in the presence of a fermentable carbon source." [SGD:curators] subset: AspGD subset: SGD is_obsolete: true consider: APO:0000308 [Term] id: APO:0000157 name: utilization of iron source namespace: observable alt_id: YPO:0000157 def: "The ability to utilize the specified compound as an iron source." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000158 name: culture appearance namespace: observable alt_id: YPO:0000158 subset: AspGD subset: SGD is_a: APO:0000049 ! morphology [Term] id: APO:0000159 name: biofilm formation namespace: observable alt_id: YPO:0000159 def: "The ability to form a layer on solid surfaces with or without other microorganisms." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000158 ! culture appearance [Term] id: APO:0000160 name: hyphal growth namespace: observable alt_id: YPO:0000160 subset: AspGD subset: SGD is_a: APO:0000027 ! filamentous growth [Term] id: APO:0000161 name: multiple namespace: mutant_type alt_id: YPO:0000161 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because it was a remnant of the original mutant types that does not fit within the new descriptor choices. subset: AspGD subset: SGD is_obsolete: true [Term] id: APO:0000162 name: Affinity Capture-MS namespace: experiment_type alt_id: YPO:0000162 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000163 name: Affinity Capture-RNA namespace: experiment_type alt_id: YPO:0000163 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000164 name: interactions namespace: experiment_type alt_id: YPO:0000164 subset: SGD is_a: APO:0000018 ! experiment_type [Term] id: APO:0000165 name: Affinity Capture-Western namespace: experiment_type alt_id: YPO:0000165 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000166 name: Biochemical Activity namespace: experiment_type alt_id: YPO:0000166 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000167 name: Co-crystal Structure namespace: experiment_type alt_id: YPO:0000167 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000168 name: Co-fractionation namespace: experiment_type alt_id: YPO:0000168 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000169 name: Co-localization namespace: experiment_type alt_id: YPO:0000169 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000170 name: Co-purification namespace: experiment_type alt_id: YPO:0000170 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000171 name: Dosage Growth Defect namespace: experiment_type alt_id: YPO:0000171 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000172 name: Dosage Lethality namespace: experiment_type alt_id: YPO:0000172 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000173 name: Dosage Rescue namespace: experiment_type alt_id: YPO:0000173 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000174 name: Epistatic MiniArray Profile namespace: experiment_type alt_id: YPO:0000174 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000175 name: FRET namespace: experiment_type alt_id: YPO:0000175 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000176 name: Far Western namespace: experiment_type alt_id: YPO:0000176 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000177 name: Phenotypic Enhancement namespace: experiment_type alt_id: YPO:0000177 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000178 name: Phenotypic Suppression namespace: experiment_type alt_id: YPO:0000178 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000179 name: Protein-RNA namespace: experiment_type alt_id: YPO:0000179 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000180 name: Protein-peptide namespace: experiment_type alt_id: YPO:0000180 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000181 name: Reconstituted Complex namespace: experiment_type alt_id: YPO:0000181 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000182 name: Synthetic Growth Defect namespace: experiment_type alt_id: YPO:0000182 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000183 name: Synthetic Lethality namespace: experiment_type alt_id: YPO:0000183 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000184 name: Synthetic Rescue namespace: experiment_type alt_id: YPO:0000184 subset: SGD is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000185 name: Two-hybrid namespace: experiment_type alt_id: YPO:0000185 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000186 name: genetic interactions namespace: experiment_type alt_id: YPO:0000186 subset: SGD is_a: APO:0000164 ! interactions [Term] id: APO:0000187 name: physical interactions namespace: experiment_type alt_id: YPO:0000187 subset: SGD is_a: APO:0000164 ! interactions [Term] id: APO:0000188 name: Affinity Chromatography namespace: experiment_type alt_id: YPO:0000188 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000189 name: Affinity Precipitation namespace: experiment_type alt_id: YPO:0000189 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000190 name: Biochemical Assay namespace: experiment_type alt_id: YPO:0000190 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000191 name: Purified Complex namespace: experiment_type alt_id: YPO:0000191 subset: SGD is_a: APO:0000187 ! physical interactions [Term] id: APO:0000192 name: phenotype assays namespace: experiment_type alt_id: YPO:0000192 subset: AspGD subset: SGD is_a: APO:0000018 ! experiment_type [Term] id: APO:0000193 name: resistance to enzymatic treatment namespace: observable alt_id: YPO:0000193 def: "The level of resistance to treatment with enzymes." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000194 name: ionizing radiation resistance namespace: observable alt_id: YPO:0000194 subset: AspGD subset: SGD is_a: APO:0000084 ! radiation resistance [Term] id: APO:0000195 name: gamma ray resistance namespace: observable alt_id: YPO:0000195 subset: AspGD subset: SGD is_a: APO:0000194 ! ionizing radiation resistance [Term] id: APO:0000196 name: mating type switching namespace: observable alt_id: YPO:0000196 subset: AspGD subset: SGD is_a: APO:0000031 ! sexual cycle [Term] id: APO:0000197 name: colony sectoring namespace: observable alt_id: YPO:0000197 subset: AspGD subset: SGD is_a: APO:0000060 ! colony appearance [Term] id: APO:0000198 name: mutation frequency namespace: observable alt_id: YPO:0000198 subset: AspGD subset: SGD is_a: APO:0000143 ! chromosome/plasmid maintenance [Term] id: APO:0000199 name: chitin deposition namespace: observable alt_id: YPO:0000199 subset: AspGD subset: SGD is_a: APO:0000053 ! cell wall morphology [Term] id: APO:0000200 name: budding pattern namespace: observable alt_id: YPO:0000200 subset: SGD is_a: APO:0000024 ! budding [Term] id: APO:0000201 name: acid pH resistance namespace: observable alt_id: YPO:0000201 subset: AspGD subset: SGD is_a: APO:0000087 ! resistance to chemicals [Term] id: APO:0000202 name: alkaline pH resistance namespace: observable alt_id: YPO:0000202 subset: AspGD subset: SGD is_a: APO:0000087 ! resistance to chemicals [Term] id: APO:0000203 name: hypoosmotic stress resistance namespace: observable alt_id: YPO:0000203 subset: AspGD subset: SGD is_a: APO:0000082 ! osmotic stress resistance [Term] id: APO:0000204 name: hyperosmotic stress resistance namespace: observable alt_id: YPO:0000204 subset: AspGD subset: SGD is_a: APO:0000082 ! osmotic stress resistance [Term] id: APO:0000205 name: ionic stress resistance namespace: observable alt_id: YPO:0000205 subset: AspGD subset: SGD is_a: APO:0000087 ! resistance to chemicals [Term] id: APO:0000206 name: heterozygous diploid namespace: mutant_type alt_id: YPO:0000206 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because all ploidy related terms will be integrated into experiment_type terms. subset: AspGD subset: SGD is_obsolete: true [Term] id: APO:0000207 name: homozygous diploid namespace: mutant_type alt_id: YPO:0000207 def: "OBSOLETE. This term was not defined before being made obsolete." [SGD:RSN] comment: This term was made obsolete because all ploidy related terms will be integrated into experiment_type terms. subset: AspGD subset: SGD is_obsolete: true [Term] id: APO:0000208 name: chromosome segregation namespace: observable alt_id: YPO:0000208 subset: AspGD subset: SGD is_a: APO:0000143 ! chromosome/plasmid maintenance [Term] id: APO:0000209 name: protein/peptide distribution namespace: observable alt_id: YPO:0000209 def: "The location(s) where the specified protein is found within the cell." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000210 name: anaerobic metabolism namespace: observable alt_id: YPO:0000210 def: "Metabolism during growth in the absence of oxygen." [SGD:curators] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000211 name: anaerobic growth rate namespace: observable alt_id: YPO:0000211 def: "The rate of growth in the absence of oxygen." [SGD:curators] subset: AspGD subset: SGD is_obsolete: true consider: APO:0000307 [Term] id: APO:0000212 name: bud morphology namespace: observable alt_id: YPO:0000212 def: "The size or shape of the bud." [SGD:curators] subset: SGD is_a: APO:0000050 ! cellular morphology [Term] id: APO:0000213 name: spindle morphology namespace: observable alt_id: YPO:0000213 subset: AspGD subset: SGD is_a: APO:0000054 ! cytoskeleton morphology [Term] id: APO:0000214 name: position of spindle pole body namespace: observable alt_id: YPO:0000214 subset: AspGD subset: SGD is_a: APO:0000213 ! spindle morphology [Term] id: APO:0000215 name: toxin resistance namespace: observable alt_id: YPO:0000215 subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000216 name: fitness namespace: observable alt_id: YPO:0000216 def: "The ability of a strain to reproduce, to produce viable progeny." [SGD:curators] comment: This is a top-level term that is not to be used for curation. subset: AspGD subset: SGD is_a: APO:0000017 ! observable [Term] id: APO:0000217 name: essentiality namespace: observable alt_id: YPO:0000217 def: "The essentiality of a gene for survival under standard conditions for growth of that organism." [SGD:curators] comment: This is a top level term, not to be used for curation. subset: AspGD subset: SGD is_a: APO:0000017 ! observable [Term] id: APO:0000218 name: redox state namespace: observable alt_id: YPO:0000218 def: "The balance of oxidized and reduced molecules in the cell. Respiration and various environmental factors cause formation of reactive oxygen species which can oxidize and damage cellular components." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000219 name: utilization of sulfur source namespace: observable alt_id: YPO:0000219 subset: AspGD subset: SGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000220 name: necrotic cell death namespace: observable alt_id: YPO:0000220 def: "A form of cell death that is distinct from apoptosis. Cells undergoing necrotic cell death undergo overall destruction. They can be distinguished from apoptotic cells because they lose membrane integrity, which only happens late in apoptosis (positive propidium iodide staining), and do not externalize phosphatidylserine (measured by annexin V staining) as do apoptotic cells." [PMID:11535781, PMID:18656474, PMID:18782613, SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000312 ! cell death [Term] id: APO:0000221 name: septum formation namespace: observable alt_id: YPO:0000221 subset: AspGD subset: SGD is_a: APO:0000053 ! cell wall morphology [Term] id: APO:0000222 name: chemical compound excretion namespace: observable alt_id: YPO:0000222 subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000223 name: mating projection morphology namespace: observable alt_id: YPO:0000223 def: "The outward appearance or shape of the mating projection." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000050 ! cellular morphology [Term] id: APO:0000224 name: RNA accumulation namespace: observable alt_id: YPO:0000224 def: "Abundance of a specified RNA or class of RNAs." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000225 name: mitotic recombination namespace: observable alt_id: YPO:0000225 def: "Measures of the rate or total recombination observed during the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000072 ! mitotic cell cycle is_a: APO:0000143 ! chromosome/plasmid maintenance [Term] id: APO:0000226 name: subcellular morphology namespace: observable alt_id: YPO:0000226 def: "The size, shape or appearance of subcellular organelles or structures." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000050 ! cellular morphology [Term] id: APO:0000227 name: cell cycle arrest in S phase namespace: observable alt_id: YPO:0000227 def: "OBSOLETE. Arrest of cells in the S phase of the cell cycle, the phase in which DNA replication occurs." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000266 [Term] id: APO:0000228 name: dominant negative namespace: mutant_type alt_id: YPO:0000228 def: "The mutation results in a gene product that interferes with the function of the normal, wild-type gene product." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000006 ! mutant_type [Term] id: APO:0000229 name: homozygous diploid namespace: experiment_type alt_id: YPO:0000229 def: "Classical genetics experiments carried out in a diploid background, where both alleles of the gene being described are identical." [SGD:RSN] subset: SGD is_a: APO:0000020 ! classical genetics [Term] id: APO:0000230 name: heterozygous diploid namespace: experiment_type alt_id: YPO:0000230 def: "Classical genetics experiments carried out in a diploid background, where alleles of the gene being described are not identical." [SGD:RSN] subset: SGD is_a: APO:0000020 ! classical genetics [Term] id: APO:0000231 name: homozygous diploid, large-scale survey namespace: experiment_type alt_id: YPO:0000231 def: "Any large-scale survey where the experiments are carried out in a homozygous diploid background." [SGD:RSN] subset: SGD is_a: APO:0000114 ! large-scale survey [Term] id: APO:0000232 name: heterozygous diploid, large-scale survey namespace: experiment_type alt_id: YPO:0000232 def: "Any large-scale survey where the experiments carried our are in a heterozygous diploid background." [SGD:RSN] subset: SGD is_a: APO:0000114 ! large-scale survey [Term] id: APO:0000233 name: homozygous diploid, competitive growth namespace: experiment_type alt_id: YPO:0000233 def: "Any competitive growth experiment carried out in a homozygous diploid background." [SGD:RSN] subset: SGD is_a: APO:0000021 ! competitive growth [Term] id: APO:0000234 name: heterozygous diploid, competitive growth namespace: experiment_type alt_id: YPO:0000234 def: "Any competitive growth experiment carried out in a heterozygous diploid background." [SGD:RSN] subset: SGD is_a: APO:0000021 ! competitive growth [Term] id: APO:0000235 name: systematic mutation set namespace: experiment_type alt_id: YPO:0000235 def: "Robotic generation and analysis of large-scale, genome-wide haploid knockout sets." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000114 ! large-scale survey [Term] id: APO:0000236 name: homozygous diploid, systematic mutation set namespace: experiment_type alt_id: YPO:0000236 def: "Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in a homozygous diploid background." [SGD:RSN] subset: SGD is_a: APO:0000235 ! systematic mutation set [Term] id: APO:0000237 name: heterozygous diploid, systematic mutation set namespace: experiment_type alt_id: YPO:0000237 def: "Robotic generation and analysis of large-scale, genome-wide mutation sets carried out in a heterozygous diploid." [SGD:RSN] subset: SGD is_a: APO:0000235 ! systematic mutation set [Term] id: APO:0000238 name: cell cycle arrest at the G2/M phase transition namespace: observable alt_id: YPO:0000238 def: "OBSOLETE. Arrest of cells at the transition between the G2 and M phases of the mitotic cell cycle." [SGD:RSN] comment: This term was made obsolete because it incorporates a temporal aspect (arrest), and will therefore be replaced by a combination of an analagous observable that does not contain temporal information and a temporal qualifier. subset: AspGD subset: SGD is_obsolete: true consider: APO:0000250 consider: APO:0000257 [Term] id: APO:0000239 name: pexophagy namespace: observable alt_id: YPO:0000239 def: "A form of autophagy selective for peroxisomes that occurs in response to starvation, damage or as a homeostatic mechanism to regulate the levels of this organelle. Pexophagy can be further subdivided into micropexophagy, the engulfment of a cluster of peroxisomes at the vacuole surface and macropexophagy, the sequestration of individual peroxisomes by a double-membrane vesicle, followed by fusion with the vacuole." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000074 ! autophagy [Term] id: APO:0000240 name: mitophagy namespace: observable alt_id: YPO:0000240 def: "A form of autophagy selective for mitochondria that occurs in response to starvation, damage or during a shift in environmental conditions. The process can be further subdivided into micromitophagy, the engulfment of a cluster of mitochondria at the vacuole surface and macromitophagy, the sequestration of individual mitochondria by a double-membrane vesicle, followed by fusion with the vacuole." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000074 ! autophagy [Term] id: APO:0000241 name: freeze-thaw resistance namespace: observable alt_id: YPO:0000241 def: "The ability of yeast cells to withstand damage incurred by one or more cycles of freezing and thawing." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000080 ! stress resistance [Term] id: APO:0000242 name: lipid particle morphology namespace: observable alt_id: YPO:0000242 def: "The size, shape or appearance of lipid particles or droplets, subcellular structures consisting of a hydrophobic core of neutral lipids (triacylglycerol and steryl esters), surrounded by a phospholipid monolayer with a small quantity of embedded proteins including enzymes involved in lipid biosynthesis. Lipid particles function as a storage compartment for lipid components." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "lipid body" [SGD:RSN] exact_synonym: "lipid droplet" [SGD:RSN] is_a: APO:0000226 ! subcellular morphology [Term] id: APO:0000243 name: Golgi morphology namespace: observable alt_id: YPO:0000243 def: "The size, shape or appearance of the Golgi apparatus or its parts." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000303 ! endomembrane system morphology [Term] id: APO:0000244 name: PCA namespace: experiment_type alt_id: YPO:0000244 subset: SGD xref_analog: BioGRID:curators is_a: APO:0000187 ! physical interactions [Term] id: APO:0000245 name: decreased rate namespace: qualifier alt_id: curators def: "Observed feature is decreased with respect to time compared to that in the wild type (slower)." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "slower" [SGD:RSN] is_a: APO:0000002 ! abnormal [Term] id: APO:0000246 name: increased rate namespace: qualifier alt_id: YPO:0000246 def: "Observed feature is increased with respect to time compared to that in the wild type (faster, accelerated)." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "accelerated" [SGD:RSN] exact_synonym: "faster" [SGD:RSN] is_a: APO:0000002 ! abnormal [Term] id: APO:0000247 name: decreased duration namespace: qualifier alt_id: YPO:0000247 def: "Observed feature occurs over a decreased period of time relative to wild type." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "decreased length" [SGD:RSN] is_a: APO:0000002 ! abnormal [Term] id: APO:0000248 name: increased duration namespace: qualifier alt_id: YPO:0000248 def: "Observed feature occurs over an increased period of time relative to wild type." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "increased length" [SGD:RSN] is_a: APO:0000002 ! abnormal [Term] id: APO:0000249 name: delayed namespace: qualifier alt_id: YPO:0000249 def: "Observed feature occurs after being postponed for a period of time relative to wild type." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "postponed" [SGD:RSN] is_a: APO:0000002 ! abnormal [Term] id: APO:0000250 name: arrested namespace: qualifier alt_id: YPO:0000250 def: "Observed feature does not occur in a given time period relative to wild type." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000002 ! abnormal [Term] id: APO:0000251 name: premature namespace: qualifier alt_id: YPO:0000251 def: "Observed feature occurs too soon, existing before the proper or usual time compared to wild type." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000002 ! abnormal [Term] id: APO:0000252 name: normal rate namespace: qualifier alt_id: YPO:0000252 def: "Observed feature occurs at the same time relative to wild type." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000117 ! normal [Term] id: APO:0000253 name: cell cycle progression namespace: observable alt_id: YPO:0000253 def: "Progression of cells through the mitotic cell." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000072 ! mitotic cell cycle [Term] id: APO:0000254 name: cell cycle progression in G2 phase namespace: observable alt_id: YPO:0000254 def: "Progression of cells through the G2 phase or second gap phase of the mitotic cell cycle, the interval between the completion of DNA synthesis and the beginning of mitosis." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000253 ! cell cycle progression [Term] id: APO:0000255 name: cell cycle progression in G1 phase namespace: observable alt_id: YPO:0000255 def: "Progression of cells through the G1 or first gap phase of the mitotic cell cycle, the interval between the completion of mitosis and the beginning of DNA synthesis." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000253 ! cell cycle progression [Term] id: APO:0000256 name: cell cycle passage through START namespace: observable alt_id: YPO:0000256 def: "Passage of cells through cell cycle control point or checkpoint located late in the G1 phase of the mitotic cell cycle just prior to S phase entry; passage through START results in commits cells to progression through the entire cell cycle." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "G1 checkpoint" [SGD:RSN] is_a: APO:0000255 ! cell cycle progression in G1 phase [Term] id: APO:0000257 name: cell cycle progression through the G2/M phase transition namespace: observable alt_id: YPO:0000257 def: "Progression of cells from G2 phase to M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000253 ! cell cycle progression [Term] id: APO:0000258 name: cell cycle progression in M phase namespace: observable alt_id: YPO:0000258 def: "Progression of cells through the M phase of the mitotic cell cycle, the phase in which mitosis occurs." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000253 ! cell cycle progression [Term] id: APO:0000259 name: cell cycle passage through the metaphase-anaphase transition namespace: observable alt_id: YPO:0000259 def: "Progression of cells from metaphase to anaphase during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000258 ! cell cycle progression in M phase [Term] id: APO:0000260 name: cell cycle progression in anaphase namespace: observable alt_id: YPO:0000260 def: "Progression of cells through anaphase during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000258 ! cell cycle progression in M phase [Term] id: APO:0000261 name: cell cycle progression in early anaphase namespace: observable alt_id: YPO:0000261 def: "Progression of cells through early anaphase during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000260 ! cell cycle progression in anaphase [Term] id: APO:0000262 name: cell cycle progression in mid anaphase namespace: observable alt_id: YPO:0000262 def: "Progression of cells through mid anaphase during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000260 ! cell cycle progression in anaphase [Term] id: APO:0000263 name: cell cycle progression in late anaphase namespace: observable alt_id: YPO:0000263 def: "Progression of cells through late anaphase during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000260 ! cell cycle progression in anaphase [Term] id: APO:0000264 name: cell cycle progression in metaphase namespace: observable alt_id: YPO:0000264 def: "Progression of cells through metaphase during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000258 ! cell cycle progression in M phase [Term] id: APO:0000265 name: cell cycle progression in telophase namespace: observable alt_id: YPO:0000265 def: "Progression of cells through telophase, the last of the stages of mitosis during M phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000258 ! cell cycle progression in M phase [Term] id: APO:0000266 name: cell cycle progression in S phase namespace: observable alt_id: YPO:0000266 def: "Progression of cells through S phase, the part of the mitotic cell cycle where DNA synthesis occurs." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000253 ! cell cycle progression [Term] id: APO:0000267 name: entry into G0 (stationary phase) namespace: observable alt_id: YPO:0000267 def: "Entry of cells into the G0 or stationary phase of the mitotic cell cycle, where they enter a quiescent state." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000072 ! mitotic cell cycle [Term] id: APO:0000268 name: exit from G0 (stationary phase) namespace: observable alt_id: YPO:0000268 def: "Exit of cells from the G0 or stationary phase of the mitotic cell cycle, where they move from a quiescent state to one where growth and division resumes in the G1 phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000072 ! mitotic cell cycle [Term] id: APO:0000269 name: cell cycle progression through the G1/S phase transition namespace: observable alt_id: YPO:0000269 def: "Progression of cells from G1 phase to S phase of the mitotic cell cycle." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000253 ! cell cycle progression [Term] id: APO:0000270 name: endoplasmic reticulum morphology namespace: observable alt_id: YPO:0000270 def: "The size, shape or appearance of the endoplasmic reticulum (ER) or its parts." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000303 ! endomembrane system morphology [Term] id: APO:0000271 name: RNA modification namespace: observable alt_id: YPO:0000271 def: "Covalent modification of a specified RNA; type of modification specified." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000272 name: Synthetic Haploinsufficiency namespace: experiment_type alt_id: YPO:0000272 subset: SGD xref_analog: BioGRID:curators is_a: APO:0000186 ! genetic interactions [Term] id: APO:0000273 name: nucleolar morphology namespace: observable alt_id: curators def: "The size, shape or appearance of the nucleolus or its parts." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000057 ! nuclear morphology [Term] id: APO:0000274 name: prion state namespace: observable alt_id: YPO:0000274 def: "Anything to do with the presence of absence of prions in a yeast strain." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000066 ! cellular processes [Term] id: APO:0000275 name: prion inheritance namespace: observable alt_id: YPO:0000275 def: "The transmission of prions from a mother cell to a daughter cell during budding." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000274 ! prion state [Term] id: APO:0000276 name: prion formation namespace: observable alt_id: YPO:0000276 def: "The conversion from the state of being prion-free to the state of having prions." [SGD:RSN] subset: AspGD subset: SGD exact_synonym: "prion acquisition" [] is_a: APO:0000274 ! prion state [Term] id: APO:0000277 name: prion loss namespace: observable alt_id: YPO:0000277 def: "The conversion from the state of having prions to the state of being prion-free." [SGD:RSN] subset: AspGD subset: SGD related_synonym: "prion curing" [] is_a: APO:0000274 ! prion state [Term] id: APO:0000278 name: normal duration namespace: qualifier alt_id: YPO:0000278 def: "Observed feature does not change with respect to time compared to that in the wild type." [SGD:RSN] subset: AspGD subset: SGD is_a: APO:0000117 ! normal [Term] id: APO:0000279 name: haploid, classical genetics namespace: experiment_type def: "Any classical genetics experiment carried out in a haploid background." [AspGD:mcc] is_a: APO:0000020 ! classical genetics [Term] id: APO:0000280 name: haploid, competitive growth namespace: experiment_type def: "Any competitive growth experiment carried out in a haploid background." [AspGD:mcc] is_a: APO:0000021 ! competitive growth [Term] id: APO:0000281 name: haploid, large-scale survey namespace: experiment_type def: "Any large-scale survey experiment carried out in a haploid background." [AspGD:mcc] is_a: APO:0000114 ! large-scale survey [Term] id: APO:0000282 name: aneuploid, classical genetics namespace: experiment_type def: "Any classical genetics experiment carried out in an aneuploid background, where the strain carries more or fewer copies than normal of a large chromosomal region, or of one or more entire chromosomes." [AspGD:mcc] is_a: APO:0000020 ! classical genetics [Term] id: APO:0000283 name: aneuploid, large-scale survey namespace: experiment_type def: "Any large-scale survey experiment carried out in an aneuploid background." [AspGD:mcc] is_a: APO:0000114 ! large-scale survey [Term] id: APO:0000284 name: aneuploid, competitive growth namespace: experiment_type def: "Any competitive growth experiment carried out in an aneuploid background." [AspGD:mcc] is_a: APO:0000021 ! competitive growth [Term] id: APO:0000285 name: haploid, systematic mutation set namespace: experiment_type def: "Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in a haploid background." [AspGD:mcc] is_a: APO:0000235 ! systematic mutation set [Term] id: APO:0000286 name: aneuploid, systematic mutation set namespace: experiment_type def: "Robotic generation and analysis of large-scale, genome-wide knockout sets carried out in an aneuploid background." [AspGD:mcc] is_a: APO:0000235 ! systematic mutation set [Term] id: APO:0000287 name: interaction with host/environment namespace: observable def: "Processes relating to interaction with the environment or with a host organism." [AspGD:mcc] subset: AspGD is_a: APO:0000017 ! observable [Term] id: APO:0000288 name: adhesion namespace: observable def: "Adherence to a substrate in the environment or in a host substrate." [AspGD:mcc] subset: AspGD is_a: APO:0000287 ! interaction with host/environment [Term] id: APO:0000289 name: response to light namespace: observable def: "The response to visible light." [AspGD:mcc] subset: AspGD is_a: APO:0000287 ! interaction with host/environment [Term] id: APO:0000290 name: allergy induction namespace: observable def: "The induction of an allergic response in the host organism." [AspGD:mcc] subset: AspGD is_a: APO:0000287 ! interaction with host/environment [Term] id: APO:0000291 name: formation of anatomical structure namespace: observable def: "The development of a discrete anatomical structure." [AspGD:mcc] subset: AspGD is_a: APO:0000023 ! development [Term] id: APO:0000292 name: secondary metabolite production namespace: observable def: "The production of secondary metabolites, which are compounds that are not directly involved in normal growth, development or reproduction." [AspGD:mcc] subset: AspGD is_a: APO:0000094 ! metabolism and growth [Term] id: APO:0000293 name: utilization of zinc source namespace: observable def: "The ability to utilize a zinc source." [AspGD:mcc] subset: AspGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000294 name: utilization of magnesium source namespace: observable def: "The ability to utilize a magnesium source." [AspGD:mcc] subset: AspGD is_a: APO:0000096 ! nutrient utilization [Term] id: APO:0000295 name: conidiation namespace: observable def: "The formation of conidia, which are asexual spores." [AspGD:mcc] subset: AspGD is_a: APO:0000023 ! development [Term] id: APO:0000296 name: organelle distribution namespace: observable def: "The localization and placement of a particular organelle." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000073 ! intracellular transport [Term] id: APO:0000297 name: mitochondrial distribution namespace: observable def: "The localization and placement of mitochondria within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000298 name: peroxisomal distribution namespace: observable def: "The localization and placement of peroxisomes within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000299 name: vacuolar distribution namespace: observable def: "The localization and placement of vacuoles within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000300 name: endoplasmic reticulum distribution namespace: observable def: "The localization and placement of endoplasmic reticulum (ER) within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000301 name: Golgi distribution namespace: observable def: "The localization and placement of the Golgi apparatus within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000302 name: vesicle distribution namespace: observable def: "The localization and placement of secretory, endocytic, or undefined vesicles within a cell or between separating cells." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000296 ! organelle distribution [Term] id: APO:0000303 name: endomembrane system morphology namespace: observable def: "The size or shape of components of the endomembrane system, which includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, peroxisomes, vacuoles, and endocytic and exocytic vesicles." [PMID:19121819, SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000226 ! subcellular morphology [Term] id: APO:0000304 name: heterozygous diploid, classical genetics namespace: experiment_type def: "Any classical genetics experiment carried out in a heterozygous diploid background." [AspGD:mcc] is_a: APO:0000020 ! classical genetics [Term] id: APO:0000305 name: homozygous diploid, classical genetics namespace: experiment_type def: "Any classical genetics experiment carried out in a homozygous diploid background." [AspGD:mcc] is_a: APO:0000020 ! classical genetics [Term] id: APO:0000306 name: conidial germination namespace: observable def: "The production of viable cells arising from conidia, or asexual spores." [AspGD:mcc] subset: AspGD is_a: APO:0000295 ! conidiation [Term] id: APO:0000307 name: anaerobic growth namespace: observable def: "Growth in the absence of oxygen." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000210 ! anaerobic metabolism [Term] id: APO:0000308 name: fermentative growth namespace: observable def: "Growth while utilizing a fermentable carbon source." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000101 ! fermentative metabolism [Term] id: APO:0000309 name: respiratory growth namespace: observable def: "Growth while utilizing a nonfermentable carbon source." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000102 ! respiratory metabolism [Term] id: APO:0000310 name: growth in exponential phase namespace: observable def: "Growth in liquid culture during the exponential phase." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000106 ! vegetative growth [Term] id: APO:0000311 name: growth in post-diauxic phase namespace: observable def: "Growth in liquid culture during the post-diauxic phase." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000106 ! vegetative growth [Term] id: APO:0000312 name: cell death namespace: observable def: "The cessation of the life of an individual cell." [SGD:mcc] subset: AspGD subset: SGD is_a: APO:0000066 ! cellular processes [Term] id: APO:0000313 name: autolysis namespace: observable def: "A regulated form of cell death that occurs in stationary phase mycelial cultures of filamentous fungi, often in response to carbon starvation. It is characterized by cell wall degradation, hyphal fragmentation and vacuolization, production of intracellular and extracellular hydrolases, and release of ammonia." [AspGD:mcc, PMID:12892635, PMID:18975147, PMID:19286987] subset: AspGD is_a: APO:0000312 ! cell death [Term] id: APO:0000314 name: cell lysis namespace: observable def: "The breaking apart of a fully formed cell." [AspGD:di] subset: AspGD is_a: APO:0000312 ! cell death