Drug Delivery Device
Microscope
As defined in http://en.wikipedia.org/wiki/Microscope
Regularization and Smoothing
Molecular Force Field Calculator
General (hyper)volume visualization tools (e.g., volume rendering).
Manifold Viewer
Educational resources (incl. book, magazines, audio, video, digital streams, etc.)
Education
Model Fitting Algorithm
Chamber
Ontology Visualization
Statistical Text Analysis
As defined by the USA, http://en.wikipedia.org/wiki/Medical_device
Medical Device
Grid Computing
Molecular Modeling and Classification
Software Documentation
Matrix
XML Database
Communication Interface
Summarization
Molecular Dynamics
Computer-Instrumentation Interface
As defined in http://en.wikipedia.org/wiki/Small_molecule
Small Molecule
License and Terms for Redistribution
Clinical Chart
**previously was called Clinical_Charts_eg_Demographics
we think this should be deleted
Ontology Diff and Alignment
Data Service
Nonhuman Data
Integrated Hosting
Cloud computing
Knowledge Environment
An information resource that facilitates collaborative knowledge building, decision making, inference or discovery, depending on the epistemological premises and goals of the community. (adopted from http://en.wikipedia.org/wiki/Knowledge_environment)
Phenotypic Measurement
Describes any kind of measurement designed to describe a phenotype
As defined in http://en.wikipedia.org/wiki/Social_network
Social Networking
Grant Preparation Expertise
A resource or expertise relating to grant preparation (http://en.wikipedia.org/wiki/Grant_(money))
Private Funding Resource
Feature Analysis
Methods for automated analysis of object features and quantitative characterization.
Data Exploration
thing stores data
Data Storage Repository
Protein Model
Any kind of similarity searching involving biological sequences
Sequence Similarity Searching
Averaging and Aglomeration
Ontology Development
Model with Closed Form Solutions
Three D Image
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to nutrition (http://en.wikipedia.org/wiki/Nutrition) research
Nutrition Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to research animals (http://en.wikipedia.org/wiki/Animal_testing)
Research Animals Facility
Data Acquisition Software
Biospecimen Management
Activity related to the creation, use, or maintenance of a biorepository (http://en.wikipedia.org/wiki/Biorepository)
Document Structure Parsing
Document Generation
Activity of interest that may be related to a BRO:Resource.
Activity
Graph Algorithm
Algorithms applied to networks and graph data structures
Oscilloscope
Psychometrics Expertise
A resource or expertise relating to psychometrics (http://en.wikipedia.org/wiki/Psychometrics)
Relational Database
Network Editor
PET Scanner
As defined in http://en.wikipedia.org/wiki/Positron_emission_tomography
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) facility or core devoted to YYY
Immune Monitoring Facility
Statistical Package
Self-contained lools, resources and packages for statistical modeling and data analysis (e.g., R, SOCR, SAS, SPSS, SYSTAT, etc.)
Lexical Analysis
Flow Cytometry Cell Sorting Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to flow cytometry (http://en.wikipedia.org/wiki/Flow_cytometry)
As defined in http://en.wikipedia.org/wiki/Medical_device
Medical Device Development
Cross-Platform Tool
Data Normalization
Spectral Transform
Various spatial and frequency-type data transformations
Three Dimensional Data
Physioloigcal Model
Integration
Simulations, sampling and resampling methods for random events.
Random Number Simulation
Sentence Splitting
Tutorial
Structured Knowledge Resource
Skull Stripping
Methods for removing of segments from images, which have no valuable information about the biological object. For example, removing non-brain tissue from whole-brain MRI scans, for the purpose of doing quantitative evaluations of time or space changing brain anatomy.
Inference From Data
Gene Therapy
As defined in http://en.wikipedia.org/wiki/Gene_therapy
Computational Hosting
Mass Spectra Identification
Power Conditioning Unit
Pass Through License
Interaction Network
Cell Model
Surgical Procedure
Methods used in the medical specialty of surgery, as defined in http://en.wikipedia.org/wiki/Surgical_procedure
Cardiovascular Model
Framework solutions that enable scientists to work smarter and ultimately increase the number of scientific discoveries made, as well as decrease the time to publish results. (http://en.wikipedia.org/wiki/Information_technology)
Research IT
Thesis
Two D Image
Government Publication
Support
A resource as support (http://en.wikipedia.org/wiki/Technical_support) for computer hardware, software or electronic goods.
Personal Communication
Electrode Puller
Area of research that may be related to a BRO:Resource.
Area of Research
Resource Integration Component
Next Generation Sequencer
Next generation of High throughput DNA sequencer (http://en.wikipedia.org/wiki/DNA_sequencing)
Structural Model
Atlas
Image Algorithm
As defined in http://en.wikipedia.org/wiki/Health_services_research
Health Services
Data Resources:
* Raw Data - acquired data, going in various SW tools (e.g., NCBI Databases, CCB IDA)
* Model Data - processed data coming out of SW tools (e.g., CCB Atlases)
* Textual Data - spread sheets, web-pages (e.g., Imaging Glossary)
* Data Types
o XML (e.g., Module Descriptions)
o JSON Objects - language independent, data transfer, data attributes (e.g., JSON output from the Yahoo! Web Services contain the same data as an XML object; the only difference is in the format, Get GeoNames PostalCodes within 10-miles of US 90095)
o Binary Data (e.g., CCB IDA)
o Comma-separated-values, .csv (e.g., California Department fo Water & Power)
Data Resource
Clinical Trial Data
Stochastic Data
used to be eg__HIVE_Pipeline
Graphical Composition
A research laboratory instrument (http://en.wikipedia.org/wiki/Laboratory_equipment)
Instrument
Code Testing Framework
Finite Element Model
Gene Expression
Biomaterial Analysis Service
A resource that provides data from any biomaterial sample that was given to the service provider. This can also be a service which performs an experiment such as electrophysiological examination of LTP in a transgenic mouse. Viewing this as an input/output relationship the input would be a tissue or an animal and the output would be data.
Hypothesis Testing Algorithm
Graph Viewer
General graph visualization resources
As defined in http://en.wikipedia.org/wiki/Physiology
Physiology
Bug Reporting
Resources for data management, retrieval, query, transfer and mapping.
Data Mining and Inference
Data Repository
High Dimensional Data
Patent
A resource that provides the manufacture of a piece of hardware. An example is producing a made to order microarray chip.
Instrument Manufacture
A facility or core (http://en.wikipedia.org/wiki/Core_(facility) devoted to phlebotomy (http://en.wikipedia.org/wiki/Phlebotomy)
Phlebotomy Facility
Version Source Control System
Proteomics Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to proteomics (http://en.wikipedia.org/wiki/Proteomics)
General data transformations
Data Transform
Authorization
PDE Solver
Connectivity Matrix
Data Annotation
As defined in http://en.wikipedia.org/wiki/Psychometrics
Psychometrics
Neuromuscular Model
Interaction Modeling
Any kind of interaction modeling
Automated Natural Language Output
Microarray Scanner
An instrument that scans microarrays (http://en.wikipedia.org/wiki/DNA_microarray)
Website
Delimited Table
Mechanical Simulation
Convolution
Fourier Transform
Multi-dimensional Fourier transform
Bibliographic Resource
Faraday Cage
Ontology Development and Management
Protein Interaction Modeling
Cell Culture Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to cell culture (http://en.wikipedia.org/wiki/Cell_culture)
Controllers
Protein Expression
Vector Data
Pre-Processing
General image pre-processing routines that are required as preliminary steps before standard image processing, analysis and visualization take place.
Numerical Model
Data Editor
As defined in http://en.wikipedia.org/wiki/Epidemiolgy
Epidemiology
General image filtering methods
Filtering
Numerical Method
General numerical modeling and computational tools (ala, GAMS: http://gams.nist.gov/)
Interactive Network Analysis
State Funding Resource
Any type of data obtained in the course of caring for humans outside of measurements obtained in clinical trials
Clinical Data
Testing Tools
Parsing
As defined in http://en.wikipedia.org/wiki/Behavioral_science
Behavioral Science
Integration and Interoperability Tool
These are resources that allow tool interoperability and resource integration and data mediation.
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to tissue or organ research
Tissue Organ Facility
Text Mining
Graph Alignment
Heat Map
A resource that provides a service the output of which is a material object. That material object might be an instrument, a chemical, or an animal.
Material Service
Graphical Processing Workflow Environments
These are Integration and interoperability tools that valilitate communication between software tools via graphical workflow pipelines.
Analysis of Gel-Electrophoresis
Sequence Alignment
Pathology Laboratory Screening
A resource that provides the analysis of biological samples. An example is genotyping transgenic mice.
Microtome
Community Engagement
As defined in http://en.wikipedia.org/wiki/Community_engagement
Industry Partnership Expertise
Expertise for liaison with Industry (http://en.wikipedia.org/wiki/Industry)
Biositemaps Information Model
Pattern Recognition
Mehtods for pattern recognition and analysis.
Network Characterization
Outcomes Research
As defined in http://en.wikipedia.org/wiki/Outcomes_research
Software Development Environment
Tools for classification of images and image segmentation.
Segmentation
Data Computation Service
A resource that provides data computation service, such as interpreting EEG data. Note, this may include human and/or computer expertise, so that a software tool may be included as a data computation service.
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to the PCR (http://en.wikipedia.org/wiki/PCR)
PCR Facility
Graphical Integration
Software Engineering Tool
Bioinformatics
As defined in http://en.wikipedia.org/wiki/Bioinformatics
Molecular Interaction
Applies to any kind of experimental measurement of interaction between molecules of any type
Identity Management
Structured Data
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to gene therapy (http://en.wikipedia.org/wiki/Gene_therapy) research
Gene Therapy Facility
Any kind of database where the database constitutes a very significant component of the system
Database
Modeling and Simulation
Any kind of software used in simulations if random events, biological structures, kinetics, function, structure, genotype of phenotype in time and space.
A resource that manufactures a product that could have a role as reagent. Examples include producing antibodies to a particular antigen (Charles River custom antibody service) or designing drugs which fit a receptor.
Reagent Manufacture
Workbench
Website Hosting
Processing Pipeline
Material Storage Service
A resource that provides material storage, maintenance and retrieval, such as the Harvard brain tissue bank.
Genomics
The study of all the genes of a cell, tissue, or organism at the DNA (genotype) or mRNA (transcriptome) levels.
Facility Core
As defined in http://dictionary.reference.com/browse/facility
As defined in http://dictionary.reference.com/browse/facility
Activity related to gathering and inventory of resources, e.g., biositemaps
Resource Inventory
Named Entity Normalization
Statistical Algorithm
Exploratory data analysis methods.
EDA
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to molecular biology (http://en.wikipedia.org/wiki/Molecular_biology)
Molecular Biology Facility
Heterogeneous Funding Resource
Modeling and computational methods that have closed-form analytical mathematical representations.
Symbolic and Analytic Model
Vibration Isolation Table
A resource that provides training to people.
Training Service
Root Finder
Regulatory Compliance
As defined in http://en.wikipedia.org/wiki/Regulatory_compliance
Software Development Resource
CT Scanner
As defined in http://en.wikipedia.org/wiki/Computed_tomography
As defined in http://en.wikipedia.org/wiki/Optical_microscope
Light Microscope
Methods for correction of image intensities where non-biological and non-psysiological drift or noise is introduced by the scanning hardware.
Inhomogeneity Correction
Generic tools for software development, engineering and deployment.
Software Development Tool
Pharmacokinetics Pharmacodynamics Expertise
A resource or expertise relating to pharmacokinetics (http://en.wikipedia.org/wiki/Pharmacokinetics) and pharmacodynamics (http://en.wikipedia.org/wiki/Pharmacodynamics)
Computational Service
Source Control
Data Analysis Software
Numerical Calculation of Electrostatic Potential
Tools for computational geometric representation and analysis.
Computational Geometry
Knowledge Mining and Capturing
Flatfile Distribution
Knowledgebase
RDF Data
Regulatory Signaling Network Reconstruction
Biobank Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to population database (http://en.wikipedia.org/wiki/Biobanks) research
Multibody Dynamics
Document
Root concept for any kind of document
Aggregate Human Data
As defined in http://en.wikipedia.org/wiki/Electron_microscopy
Electron Microscope
Antibody Production
The creation of antibodies that bind to a specific antigen.
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to neurological (http://en.wikipedia.org/wiki/Neurology) research
Neurological Facility
Mesh Model
Protein-Protein Interaction
Electrode Holder
Document Retrieval
Pharmacokinetics Pharmacodynamics
As defined in http://en.wikipedia.org/wiki/Pharmacokinetics and http://en.wikipedia.org/wiki/Pharmacodynamics
Journal Article
Individual Human Data
Centrality Analsysis
Micromanipulator
Signal Processing
Knowledge Extraction
Resources that are disseminated on the Internet via HTTP, FTP and other web protocols.
Web Posting
Amplifier
Reagent Resource
A material resource that provides access to reagents, such as antibodies or drugs. Included in this definition are sites designed to work with individual service providers of reagents such as ExactAntigen who do not sell antibodies directly, but provide a catalog with pricing information for most commercial and noncommercial antibody providers. Note, reagents may be of organismal origin or not, but must be classified as macromolecules or molecules.
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to immunohistochemistry (http://en.wikipedia.org/wiki/Immunohistochemistry)
Immunohistochemistry Facility
Community Structure Analysis
Pressure Regulator
As per alignment with NIF resource type hierarchy.
A resource that provides training, educational opportunities, educational events, or educational materials, such as courses, workshops, seminar videos, or graduate programs.
Training Resource
Mailing List
Conference Proceeding
A resource that provides detailed plans for a scientific experiment, medical trial, or other piece of research.
Experimental Protocol
Behavioral Analysis Service
A resource that provides data from whole behaving animals, which are either provided to the service provider or purchased by the service provider specifically for the experiment which the provider was contracted to perform. Viewing this as an input/output relationship the input would be an animal and the output would be data such as an excel sheet of 'times of escape' from the Morris water maze.
Describes any kind of measurement, whether in pre-clinical experiments or obtained in a clinical trial in the life sciences
Experimental Measurement
Portal
Documentation Generation
Wavelet Model
As defined in http://en.wikipedia.org/wiki/Metabolomics
Metabolomics
As defined in http://en.wikipedia.org/wiki/Nursing
Nursing
Molecular Visualization
Resource Description
As defined in http://en.wikipedia.org/wiki/Server_(computing)
Server
Stem Cell Therapy Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to stem cell (http://en.wikipedia.org/wiki/Stem_cell_treatments) research
Cross-Sectional Viewer
Data visualization tools relying on displays of lower-dimensional cross-sectional (hyper)planes.
MRI Scanner
As defined in http://en.wikipedia.org/wiki/Magnetic_resonance_imaging
Calculation of Solvent Accessible Area
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to YYY
Fabrication Facility
Pediatrics
As defined in http://en.wikipedia.org/wiki/Pediatrics
Authentication
Outlier Detection and Removal
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to YYY
Cell Processing Clean Room Facility
Image Processing
Tools and algorithms for dealing with (hyper)images:
Hyper-Volumes / Solids
Intensity-based Solids
Real-valued Intensity-based Solids
* 2D ROIs
* 3D ball-like solids
* 4D time-dependent hyper-volumes
Vector-valued Intensity-based Solids
* 2D ROIs
* 3D ball-like solids
* 4D time-dependent hyper-volumes
Tensor-valued Intensity-based Solids
* 2D ROIs
* 3D ball-like solids
* 4D time-dependent hyper-volumes
Masks of Solids
Deterministic (Binary) Masks
* 2D ROI masks
* 3D ball-like masks
* 4D time-dependent hyper-masks
Probabilistic (Fuzzy) Masks
* 2D ROI fuzzy masks
* 3D ball-like fuzzy masks
* 4D time-dependent fuzzy hyper-masks
Therapeutics
Innovative therapeutics (http://en.wiktionary.org/wiki/therapeutics)
Network Interaction Model
Four Dimensional Data
3-D models evolving in time
Image
Applies to any kind of image data obtained from an instrument or generated through computational extrapolation
Community and User Interaction Systems, educational resources and web-services.
Dissemination Vehicle
Microscopy Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to microscopy (http://en.wikipedia.org/wiki/Microscope)
Binary Executable
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to physiology (http://en.wikipedia.org/wiki/Physiology) resources
Physiology Facility
Standard Specification
As defined in http://en.wikipedia.org/wiki/Pathology
Pathology
Metabolism Facility
A facility or core devoted to research into metabolism (http://en.wikipedia.org/wiki/Metabolism)
Toxicology
defined in http://en.wikipedia.org/wiki/Toxicology
Narrative Resource
An information resource that provides a literary work, book, story or account of events, experiences, or the like, whether true or fictitious.
A resource that produces a product that is of organismal origin. An example of a biomaterial service is the production of a knockout mouse or cell culture. Note, for simplicity of definitions all molecules including antibodies and toxins are considered reagents even though some may have an organismal origin.
Biomaterial Manufacture
Contact Modeling
Data Transfer and Communication
Pipeline Manager
Temperature Control Unit
Cortical Modeling
Detection, extraction, representation and analysis of cortical brain structure.
Backup Archives and Disaster Recovery
An automated mechanical machine for creating microarrays
Robotic Arrayer
The large-scale study of proteins
Proteomics
Interactive Tool
Techniques for construction of new computaitonal atlases of biological objects using imaging techniques.
Atlas Generation
Network and Communication
Computer network (http://en.wikipedia.org/wiki/Computer_network) and communication (http://en.wikipedia.org/wiki/Telecommunication)
Preclinical
The stages of biomedical research which take place in model organisms and cell lines, prior to first-in-human application of a diagnostic or therapeutic intervention.
Assessment Material Resource
A material resource that provides access to scientific data assessment instruments, for example behavioral assessment tests from CERAD (Consortium to Establish a Registry for Alzheimer's Disease) Assessment instruments page.
Version Information
Online Support
Signaling Network Reconstruction
Data Object
Rack
Phenotype Management
Resource/software/data analysis/data mining and inference/information retrieval/phenotype management
Molecular Model
Federal Funding Resource
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to NMR (http://en.wikipedia.org/wiki/Nuclear_magnetic_resonance) research
NMR Facility
Publication
Software Technology Protocol
Web Service
Service Resource
A resource that provides access to some type of service, e.g., making antibodies, storing data, computing services.
As per alignment with NIF resource type hierarchy.
Communication and Collaborative Work
Algorithm
A general type of algorithmic resource.
Statistical Analysis
Variety of software libraries and tools for statistical modeling and analysis.
Free Text
Individual, self-contained and atomic software tools or libraries that are invoked by the user on local machines or remote servers.
# Computational Algorithms (e.g., Level-sets, Bioinformatics Algorithms)
# Software Suites (e.g., Vista, geWorkbench, FEATURE, ShapeViewer, Slicer3D, Pipeline)
# Dowloadable libraries (e.g., ITK, ShapeToolsLibrary)
# Locally Executable programs (e.g., Debabeler, )
Resource
Computational Model
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to radioisotopes or radionuclide (http://en.wikipedia.org/wiki/Radioisotopes)
Radioisotopes Facility
Hierarchical Tree
Viewers of directed, acyclic tree-structures.
An instrument based on the PCR method (http://en.wikipedia.org/wiki/PCR)
PCR Instrument
Hosting
Portlet Component
Optimizer
Paper
Time Series Analysis
Monte Carlo Simulation
Anatomic Atlas
Data Distribution
Multi-dimensional wavelet transform
Wavelet Transform
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to x-ray crystallography (http://en.wikipedia.org/wiki/X-ray_crystallography)
X-Ray Crystallography Facility
Hyperbolic Graph
Hyperbolic space (hierarchical) graph/tree visualization tools.
As defined in http://en.wikipedia.org/wiki/Mass_spectrometry
Mass Spectrometer
Biostatistics
As defined in http://en.wikipedia.org/wiki/Biostatistics
As defined in http://en.wikipedia.org/wiki/Calorimeter
Calorimeter
Physico-Chemical Model
Structure-Based Protein Classification
Object Database
A resource that provides data storage and maintenance, such as a database which accepts submissions of similar data for storage and use. For example, the cell centered database (CCDB) encourages submissions of anatomical images that will increase its' holdings.
Data Storage Service
Tools for representation, modeling, analysis and visualization of biological shape:
Points
* Points in Rn
Lines
* Sulci - lines with boundary (homeomorphic to a point)
* UCFs - lines without boundaries (simple-closed contours)
Surfaces
* Patches with boundary (e.g., gyri, sulcal-ribbons)
* Genus-zero surfaces ~ S2 (e.g., cortex, hippocampus)
* Higher-genus surfaces (e.g., tori)
Hyper-Surfaces
* Tunnels (e.g., fMRI time-activation surface map)
Shape Analysis
Visualization tools for (hyper)imaging data.
Imaging
Monoclonal Antibody Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) facility devoted to monoclonal antibody (http://en.wikipedia.org/wiki/Monoclonal_antibody) research and uses
Numerical Integrator
As defined in http://en.wikipedia.org/wiki/Training
Training
Approximate Graph Alignment
Activity related to learning about, securing, and managing money to support research
Research Funding
A material supply resource that provides access to physical materials like tissue samples or organisms. For example, the IMSR enables acquisition of a transgenic mouse or cell line. Note, for the sake of simplicity we have excluded molecules of organismal origin from this category as these can be manufactured chemically and have included them under the reagent category (eg. antibodies, toxins).
Biomaterial Supply Resource
License and Terms for Use
Visualization
Tools for graphical, interactive, multimodal and multidimensional data and result visualization.
Feature Request
Stimulator
Imaging Facility
A facility (http://en.wikipedia.org/wiki/Core_(facility)) devoted to biomedical imaging (http://en.wikipedia.org/wiki/Medical_imaging)
Research Lab Management
Management and communications within the laboratory setting (http://www.umuc.edu/programs/undergrad/certificates/lab_mgmt.shtml)
XML Data
News and RSS feed resources
News
Partial Parsing
Image Reconstruction
Searching Sorting and Indexing
Continuum Method Simulation
Source Code
Ontology
Data Processing Software
Discrete Data
Biosafety Level Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to (http://en.wikipedia.org/wiki/Core_(facility)) facility devoted to YYY
Deep Parsing
Material Analysis Service
A resource that provides data from any material sample that was given to the service provider. This can also be a service which performs an experiment such as electrophysiological examination of LTP magnitude in the presence of a drug given to the service provider. Viewing this as an input/output relationship the input would involve a drug and the ouput would be data such as a dose response curve.
Calendar Schedule and Resource Management
Interactive hands-on resources for data management (entry, query, traversal, comparison, etc.)
Interactive Web-Based Tool
or resources that help investigators do clinical studies or trials, including, epidemiology (http://en.wikipedia.org/wiki/Epidemiology), outcome development, physiological human studies, interventional trials, etc
Clinical Studies
Genomic Phenotypic Analysis
Standalone Application
Network Model
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to metabolomics (http://en.wikipedia.org/wiki/Metabolomics)
Metabolomics Facility
As per alignment with NIF resource type hierarchy.
People Resource
A resource that provides information or services involving people. It could refer to a tool or service that provides information about individuals such as a "who is who?" website, and also to a service or expertise provided by a particular person or team.
Sequence Visualization
Molecular sequence viewers
Report
Code Profiler
As per alignment with NIF resource type hierarchy.
A resource that provides information (non-realizable information entities), e.g., a data resource, a narrative resource, a knowledge environment resource.
Information Resource
Mapper
Prediction of Side-Chain Conformations
Molecular Trajectory Data
Continuous Data
Web Access
Semantic Network
Unstructured Data
Meshing
RNA Model
Course Material
Fast Fourier Transform
Data Visualization
Sequence Annotation
Methods for co-registration, alignment and warping of imaging and hyper-imaiging data.
Registration
Graph Analysis
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to cell biology (http://en.wikipedia.org/wiki/Cell_biology) research
Cell Biology Facility
License
Compiler
Modular Component
Biomedical Supply Resource
Biomedical (http://en.wikipedia.org/wiki/Biomedicine) supplies provided for a laboratory (http://en.wikipedia.org/wiki/Laboratory)
Application Programming Interface
Online training and educational resources.
Online Course
Laboratory Supply Resource
Material supplies provided for a laboratory (http://en.wikipedia.org/wiki/Laboratory)
Software Development
IRB
Tag as a resource for a specific Institutional Review Board (http://en.wikipedia.org/wiki/Institutional_Review_Board)
NMR Instrument
An instrument based on NMR (http://en.wikipedia.org/wiki/NMR_spectroscopy)
Data Compression
Programmatic Access
Vibrotome
Oscillograph
Linear Algebra Tool
A resource or expertise relating to (http://en.wikipedia.org/wiki/Toxicology)
Toxicology Expertise
Funding Resource
As per alignment with NIF resource type hierarchy.
Sources of funding, support materials, documents, private, state and federal agencies, etc.
Book
Pattern Inference Algorithm
Cross-Language Wrapping
Information Retrieval
Database Hosting
Refers to any software delivered in toolkit fashion, whereby the kit components can be used independently of each other, or included as part of another program
Toolkit
Cardiovascular Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to cardiovascular (http://en.wikipedia.org/wiki/Cardiovascular_disease) research.
A resource that provides supplies or equipment such as reagents, instruments, tissue samples or organisms.
As per alignment with NIF resource type hierarchy.
Material Resource
White Paper
Protocol Development Expertise
A resource or expertise in research (http://en.wikipedia.org/wiki/Protocol_(natural_sciences)) or clinical-trial protocol (http://en.wikipedia.org/wiki/Clinical_trial_protocol)
Scalar Data
As per alignment with NIF resource type hierarchy.
Software
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to YYYY
Biomolecular Interaction Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to micro-dissection (http://en.wikipedia.org/wiki/Microdissection)
Micro Dissection Facility
Software Distribution
Animal Models Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to animal research models (http://en.wikipedia.org/wiki/Animal_models)
Pattern and Motif Inference
Volume Model Scene Data
Genomics Facility
A facility or core (http://en.wikipedia.org/wiki/Core_(facility)) devoted to genomics (http://en.wikipedia.org/wiki/Genomics)
Homology Modeling
Named Entity Recognition
Computational Biology
As defined in http://en.wikipedia.org/wiki/Computational_biology
Natural Language Processing
Data input API for resource
data input
Data input
related resource
Related activity represented by a subclass of the activity:Activity class in the BRO -- multiple values allowed
Former subclasses of activity:Activity that have been deprecated and their usage is not recommended.
Deprecated Activity
related activities
OutputForm
OutputForm
What form of output is produced by this thing
resource type
The class in the BRO that describes the type of the resource -- multiple values allowed
Resource type
MeasurementType
what kind of information is being capture in this measurement?
MeasurementType
InteractionType
InteractionType
What type of interaction is this?
Data output API for resource
Data output
data output
AlgorithmPurpose
AlgorithmPurpose
Scientific purpose of algorithm
version information
The version information for the resource defined by a desc:Version_Information instance (containing information about version number, development stage and release date)
DocumentGoal
DocumentGoal
What are the goals of the document
Related area of research represented by a subclass of the area:Area_of_Research class in the BRO -- multiple values allowed
related areas of research
The software platforms on which the resource was tested (for software resources)
Platforms tested
platforms
release date
Date of release of version (can be specified as xsd:date or as an xsd:string)
Any kind of identifier
Identifier
Identifier
The contact person for the resource
Contact Person(s)
contact person
contact person email
Email address contact for the resource
is this a peer-reviewed scientific publication?
PeerReviewStatus
PeerReviewStatus
Name
The name of the resource
resource name
Implementation Language
language
Software programming language in which resource was written or can be accessed
contact person phone
Phone number contact for the resource
broad classification of protein type based on structure or function
ProteinType
ProteinType
The description of the resource
description
Description
Type of biological transcript
TranscriptType
TranscriptType
The author of this biositemap entry
biositemap author
Name of the organization that produced, shares, or uses the resource (for example Stanford University, University of Pittsburgh, etc.)
Organization
organization
Version number
The version number
version
Target User Type
Target_User_Type
Implementation_Language
Implementation Language
The license under which the resource is distributed
License model
license
Name and/or acronym of the research center or institute (if appropriate) that produced, shares, or uses the resource (usually a sub-unit of Organization)
center
Center or Institute
Other Information
Other_Information
research program
Research Program
Name of the research cluster as identified through a funding program or other generally-accepted organizational cluster (for example NCBC, CTSA, etc.)
choice of either many individual keyword elements or one element with comma-separated-values
keywords
The list of keywords
Development stage
development stage
Development stage e.g. pre-alpha, alpha, beta, pre-release, release
mailing list URL
documentation URL
Originator
Originator of a class
Originator
What technical support is available [available | limited | none]
technical support
URL
The URL to access the resource
documentation available
Is there available documentation [yes | no]
resource sharable
Is this resource sharable [yes | no]
Software development
Former subclasses of BRO:Resource that have been deprecated and their usage is not recommended.
Deprecated Resource
Biomedical Resources which are not predominantly computing (http://en.wikipedia.org/wiki/Computing) in nature.
Non Computational Service
A resource as an expert (http://en.wikipedia.org/wiki/Expert) who can answer questions, provide technical assistance, etc.
Expertise
General data transformations
Data Transforms
General numerical modeling and computational tools (ala, GAMS: http://gams.nist.gov/)
Numerical Methods
Numerical Integrators
Integration and Interoperability Tools
These are resources that allow tool interoperability and resource integration and data mediation.
General (hyper)volume visualization tools (e.g., volume rendering).
Interactive Tools
Manifold Viewers
Tutorials
**previously was called Clinical_Charts_eg_Demographics
we think this should be deleted
Clinical Charts
Data Storage
thing stores data
Provenance and Intellectual Property
Provenance
Heath Services
As defined in http://en.wikipedia.org/wiki/Health_services_research
Novel Therapeutics
Innovative therapeutics (http://en.wiktionary.org/wiki/therapeutics)
Network model
Former subclasses of BRO:Data_Resource that have been deprecated and their usage is not recommended.
Deprecated Data Resource
replacedBy
byline
Linear Algebra Tools
Former subclasses of area:Area_of_Research that have been deprecated and their usage is not recommended.
Deprecated Area of Research
Biochemical (http://en.wikipedia.org/wiki/Biochemistry) supplies provided for a laboratory (http://en.wikipedia.org/wiki/Laboratory)
Biochemical Supply Resource
definition
Definition
Molecular Trajectories
Scripting Language and Environment
Material supplies provided for research (http://en.wikipedia.org/wiki/Research) purposes
Research Supplies
Graph Viewers
General graph visualization resources
physico chemical models