format-version: 1.2 date: 08:12:2008 21:42 auto-generated-by: OBO-Edit 2.000-beta52 synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" NARROW default-namespace: spatial remark: based on FBql [Term] id: BSPO:00000021 name: deep-superficial gradient (obsolete) comment: was made obsolete because the ID had too many digits is_obsolete: true replaced_by: BSPO:0000021 [Term] id: BSPO:0000000 name: left side namespace: spatial synonym: "left" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000110 BSPO:0000007 ! right side relationship: starts_axis BSPO:0000017 ! left/right axis [Term] id: BSPO:0000001 name: upper side namespace: spatial synonym: "upper" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: starts_axis BSPO:0000011 ! upper/lower axis [Term] id: BSPO:0000002 name: lower side namespace: spatial synonym: "lower" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: finishes_axis BSPO:0000011 ! upper/lower axis [Term] id: BSPO:0000003 name: deep side namespace: spatial synonym: "deep" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000107 BSPO:0000004 ! superficial side relationship: starts_axis BSPO:0000012 ! deep/superficial axis [Term] id: BSPO:0000004 name: superficial side namespace: spatial synonym: "superficial" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: finishes_axis BSPO:0000012 ! deep/superficial axis [Term] id: BSPO:0000005 name: anatomical surface namespace: spatial def: "A 2D surface of an anatomical continuant" [BSPO:cjm] comment: to be merged into CARO synonym: "surface" EXACT [] [Term] id: BSPO:0000006 name: anatomical margin namespace: spatial def: "fiat region extending a short distance from the boundary of an object inwards" [BSPO:cjm] synonym: "edge" EXACT [] synonym: "margin" EXACT [] is_a: BSPO:0000070 ! anatomical region [Term] id: BSPO:0000007 name: right side namespace: spatial synonym: "right" EXACT [] is_a: BSPO:0000054 ! anatomical side relationship: finishes_axis BSPO:0000017 ! left/right axis [Term] id: BSPO:0000008 name: parasagittal section namespace: spatial def: "Sagittal section that divides bilateral body into unequal equal left and right sections." [BSPO:mah] is_a: BSPO:0000417 ! sagittal section [Term] id: BSPO:0000009 name: midsaggital section namespace: spatial def: "Sagittal section that divides bilateral body into equal left and right sections." [BSPO:mah] synonym: "median plane" RELATED [] synonym: "median sagittal plane" EXACT [] synonym: "midsagittal plane" EXACT [] xref: FMA:74563 is_a: BSPO:0000417 ! sagittal section [Term] id: BSPO:0000010 name: anatomical axis namespace: spatial def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm] comment: axis directions are defined in terms of axes xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG relationship: passes_through CARO:0000000 ! anatomical entity [Term] id: BSPO:0000011 name: upper/lower axis namespace: spatial def: "An anatomical axis determined by gravity." [BSPO:cjm] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000012 name: deep/superficial axis namespace: spatial is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000013 name: anterior/posterior axis namespace: spatial def: "An axis that bisects an organism from head end to opposite end of body or tail." [] synonym: "A-P axis" EXACT [] synonym: "AP axis" EXACT [] synonym: "anteroposterior axis" EXACT [] synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location] synonym: "craniocaudal axis" NARROW vertebrate [] synonym: "rostral/caudal" NARROW vertebrate [] synonym: "rostrocaudal axis" NARROW vertebrate [] is_a: BSPO:0000010 ! anatomical axis relationship: approximately_perpendicular_to BSPO:0000016 ! dorsal/ventral axis [Term] id: BSPO:0000014 name: apical/basal axis namespace: spatial comment: In plants, this is the axis that runs from the shoot to the root. synonym: "apical/basal" EXACT [] synonym: "longitudinal axis" EXACT [] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000015 name: proximal/distal axis namespace: spatial def: "from tip of an appendage (distal) to where it joins the body (proximal)." [http://en.wikipedia.org/wiki/Anatomical_terms_of_location] synonym: "proximal/distal" EXACT [] synonym: "proximodistal" EXACT [] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000016 name: dorsal/ventral axis namespace: spatial def: "An axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [] synonym: "dorsoventral axis" EXACT [] is_a: BSPO:0000010 ! anatomical axis [Term] id: BSPO:0000017 name: left/right axis namespace: spatial def: "An axis that bisects an organism from left to right sides of body, through a sagittal section." [] synonym: "dextro-sinister axis" EXACT [] synonym: "left to right axis" EXACT [] is_a: BSPO:0000010 ! anatomical axis intersection_of: BSPO:0000010 ! anatomical axis intersection_of: orthogonal_to BSPO:0000417 ! sagittal section [Term] id: BSPO:0000018 name: transverse section namespace: spatial def: "Anatomical section that divides body into anterior and posterior sections." [BSPO:mah] synonym: "axial plane" EXACT [] synonym: "axial section" EXACT [] synonym: "cross-section" RELATED [] synonym: "transverse plane" EXACT [] xref: FMA:12247 is_a: BSPO:0000400 ! anatomical section [Term] id: BSPO:0000019 name: horizontal section namespace: spatial def: "Anatomical section that divides bilateral body into dorsal and ventral sections." [BSPO:mah] synonym: "coronal section" RELATED [] synonym: "frontal section" RELATED [] xref: FMA:52810 is_a: BSPO:0000400 ! anatomical section [Term] id: BSPO:0000020 name: upper-lower gradient namespace: spatial is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: follows_axis BSPO:0000011 ! upper/lower axis [Term] id: BSPO:0000021 name: deep-superficial gradient namespace: spatial is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: follows_axis BSPO:0000012 ! deep/superficial axis [Term] id: BSPO:0000022 name: superior side namespace: spatial synonym: "superior" EXACT [] is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000023 name: apical-basal gradient namespace: spatial is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: follows_axis BSPO:0000014 ! apical/basal axis [Term] id: BSPO:0000024 name: proximal-distal gradient namespace: spatial is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: follows_axis BSPO:0000015 ! proximal/distal axis [Term] id: BSPO:0000025 name: inferior side namespace: spatial synonym: "inferior" EXACT [] is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000031 name: upper region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000001 ! upper side [Term] id: BSPO:0000032 name: lower region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000002 ! lower side [Term] id: BSPO:0000033 name: deep region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000003 ! deep side [Term] id: BSPO:0000034 name: superficial region namespace: spatial is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000004 ! superficial side [Term] id: BSPO:0000040 name: upper/lower compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: has_axis BSPO:0000011 ! upper/lower axis [Term] id: BSPO:0000041 name: deep/superficial compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: has_axis BSPO:0000012 ! deep/superficial axis [Term] id: BSPO:0000043 name: apical/basal compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: has_axis BSPO:0000014 ! apical/basal axis [Term] id: BSPO:0000044 name: proximal/distal compartment boundary namespace: spatial is_a: BSPO:0000092 ! anatomical compartment boundary intersection_of: BSPO:0000092 ! anatomical compartment boundary intersection_of: has_axis BSPO:0000015 ! proximal/distal axis [Term] id: BSPO:0000051 name: anatomical gradient namespace: spatial def: "A region defined by change in the value of some quantity per unit of distance across some spatial axis." [BSPO:cjm] xref: FBql:00005254 [Term] id: BSPO:0000052 name: anterior-posterior gradient namespace: spatial xref: FBcv:0000142 xref: FBql:00005256 is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: has_axis BSPO:0000013 ! anterior/posterior axis [Term] id: BSPO:0000053 name: dorsal-ventral gradient namespace: spatial xref: FBcv:0000143 xref: FBql:00005255 is_a: BSPO:0000051 ! anatomical gradient intersection_of: BSPO:0000051 ! anatomical gradient intersection_of: has_axis BSPO:0000016 ! dorsal/ventral axis [Term] id: BSPO:0000054 name: anatomical side namespace: spatial def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm] xref: FBql:00005841 [Term] id: BSPO:0000055 name: anterior side namespace: spatial synonym: "anterior" EXACT [] synonym: "rostral" EXACT [] xref: FBcv:0000053 xref: FBql:00005848 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000096 BSPO:0000056 ! posterior side relationship: opposite_to BSPO:0000056 ! posterior side relationship: starts_axis BSPO:0000013 ! anterior/posterior axis [Term] id: BSPO:0000056 name: posterior side namespace: spatial synonym: "caudal" NARROW vertebrate [] synonym: "posterior" EXACT [] xref: FBcv:0000065 xref: FBql:00005849 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000099 BSPO:0000055 ! anterior side relationship: finishes_axis BSPO:0000013 ! anterior/posterior axis [Term] id: BSPO:0000057 name: apical side namespace: spatial synonym: "apical" EXACT [] xref: FBcv:0000054 xref: FBql:00005854 is_a: BSPO:0000054 ! anatomical side relationship: opposite_to BSPO:0000058 ! basal side relationship: starts_axis BSPO:0000014 ! apical/basal axis [Term] id: BSPO:0000058 name: basal side namespace: spatial comment: The part of the organism attached to a substrate. Axis of symmetry. synonym: "basal" EXACT [] xref: FBcv:0000055 xref: FBql:00005855 is_a: BSPO:0000054 ! anatomical side relationship: finishes_axis BSPO:0000014 ! apical/basal axis [Term] id: BSPO:0000059 name: central side namespace: spatial comment: central is not an axis direction synonym: "central" EXACT [] xref: FBcv:0000056 xref: FBql:00015851 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000060 name: contralateral side namespace: spatial def: "On the opposite side" [BSPO:cjm] comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. synonym: "contralateral" EXACT [] xref: FBcv:0000057 xref: FBql:00005851 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000061 name: proximal side namespace: spatial synonym: "proximal" EXACT [] xref: FBcv:0000066 xref: FBql:00005852 is_a: BSPO:0000054 ! anatomical side relationship: opposite_to BSPO:0000062 ! distal side relationship: starts_axis BSPO:0000015 ! proximal/distal axis [Term] id: BSPO:0000062 name: distal side namespace: spatial synonym: "distal" EXACT [] xref: FBcv:0000058 xref: FBql:00005853 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000097 BSPO:0000061 ! proximal side relationship: finishes_axis BSPO:0000015 ! proximal/distal axis [Term] id: BSPO:0000063 name: dorsal side namespace: spatial comment: rename to 'dorsally located'? synonym: "dorsal" EXACT [] xref: FBcv:0000059 xref: FBql:00005842 is_a: BSPO:0000054 ! anatomical side relationship: BSPO:0000098 BSPO:0000066 ! lateral side relationship: opposite_to BSPO:0000068 ! ventral side relationship: starts_axis BSPO:0000016 ! dorsal/ventral axis [Term] id: BSPO:0000065 name: ipsilateral side namespace: spatial def: "On the same side" [BSPO:cjm] comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation. synonym: "ipsilateral" EXACT [] xref: FBcv:0000062 xref: FBql:00005850 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000066 name: lateral side namespace: spatial synonym: "lateral" EXACT [] xref: FBcv:0000063 xref: FBql:00005844 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000067 name: medial side namespace: spatial comment: a point in the centre of the organism (where the left-right axis intersects the midsagittal plane) synonym: "medial" EXACT [] xref: FBcv:0000064 xref: FBql:00005847 is_a: BSPO:0000054 ! anatomical side [Term] id: BSPO:0000068 name: ventral side namespace: spatial synonym: "ventral" EXACT [] xref: FBcv:0000070 xref: FBql:00005843 is_a: BSPO:0000054 ! anatomical side relationship: finishes_axis BSPO:0000016 ! dorsal/ventral axis [Term] id: BSPO:0000070 name: anatomical region namespace: spatial def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm] comment: to be merged into CARO xref: FBql:00005841 [Term] id: BSPO:0000071 name: anterior region namespace: spatial xref: FBql:00005848 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000055 ! anterior side [Term] id: BSPO:0000072 name: posterior region namespace: spatial xref: FBql:00005849 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000056 ! posterior side [Term] id: BSPO:0000073 name: apical region namespace: spatial xref: FBql:00005854 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000057 ! apical side [Term] id: BSPO:0000074 name: basal region namespace: spatial xref: FBql:00005855 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000058 ! basal side [Term] id: BSPO:0000075 name: central region namespace: spatial xref: FBql:00015851 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000059 ! central side [Term] id: BSPO:0000076 name: contralateral region namespace: spatial comment: inherited from flybase cv. not clear how this would be used xref: FBql:00005851 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000060 ! contralateral side [Term] id: BSPO:0000077 name: proximal region namespace: spatial xref: FBql:00005852 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000061 ! proximal side [Term] id: BSPO:0000078 name: distal region namespace: spatial xref: FBql:00005853 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000062 ! distal side [Term] id: BSPO:0000079 name: dorsal region namespace: spatial xref: FBql:00005842 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000080 name: dorso-lateral region namespace: spatial xref: FBql:00005845 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000063 ! dorsal side intersection_of: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000081 name: ipsilateral region namespace: spatial xref: FBql:00005850 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000065 ! ipsilateral side [Term] id: BSPO:0000082 name: lateral region namespace: spatial xref: FBql:00005844 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000083 name: medial region namespace: spatial xref: FBql:00005847 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000067 ! medial side [Term] id: BSPO:0000084 name: ventral region namespace: spatial xref: FBql:00005843 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000085 name: ventro-lateral region namespace: spatial comment: This is an example of a composition of two axis positions xref: FBql:00005846 is_a: BSPO:0000070 ! anatomical region intersection_of: BSPO:0000070 ! anatomical region intersection_of: overlaps BSPO:0000066 ! lateral side intersection_of: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000086 name: anatomical compartment namespace: spatial comment: to be merged into CARO xref: FBql:00005873 [Term] id: BSPO:0000087 name: anterior compartment namespace: spatial xref: FBcv:0000031 xref: FBql:00005874 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000088 name: compartment boundary namespace: spatial xref: FBcv:0000032 xref: FBql:00005878 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000089 name: dorsal compartment namespace: spatial xref: FBcv:0000035 xref: FBql:00005876 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000090 name: posterior compartment namespace: spatial xref: FBcv:0000036 xref: FBql:00005875 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000091 name: ventral compartment namespace: spatial xref: FBcv:0000037 xref: FBql:00005877 is_a: BSPO:0000086 ! anatomical compartment [Term] id: BSPO:0000092 name: anatomical compartment boundary namespace: spatial comment: to be merged into CARO xref: FBql:00005881 [Term] id: BSPO:0000093 name: anterior/posterior compartment boundary namespace: spatial xref: FBcv:0000033 xref: FBql:00005880 is_a: BSPO:0000092 ! anatomical compartment boundary [Term] id: BSPO:0000094 name: dorsal/ventral compartment boundary namespace: spatial xref: FBcv:0000034 xref: FBql:00005879 is_a: BSPO:0000092 ! anatomical compartment boundary [Typedef] id: BSPO:0000095 name: anatomical_relation namespace: spatial is_obsolete: true xref: FBql:00005860 [Typedef] id: BSPO:0000096 name: anterior_to namespace: spatial is_transitive: true inverse_of: BSPO:0000099 ! posterior_to synonym: "rostral_to" EXACT [] xref: FBcv:0000039 xref: FBql:00005863 [Typedef] id: BSPO:0000097 name: distal_to namespace: spatial is_transitive: true inverse_of: BSPO:0000100 ! proximal_to xref: FBcv:0000040 xref: FBql:00005867 [Typedef] id: BSPO:0000098 name: dorsal_to namespace: spatial is_transitive: true inverse_of: BSPO:0000102 ! ventral_to synonym: "superior_to" EXACT [] xref: FBcv:0000041 xref: FBql:00005865 [Typedef] id: BSPO:0000099 name: posterior_to namespace: spatial is_transitive: true inverse_of: BSPO:0000096 ! anterior_to synonym: "caudal_to" NARROW vertebrate [] xref: FBcv:0000045 xref: FBql:00005864 [Typedef] id: BSPO:0000100 name: proximal_to namespace: spatial def: "x proximal_to y iff x is closer to the point of attachment with the body than y." [] is_transitive: true inverse_of: BSPO:0000097 ! distal_to comment: The elbow is proximal to the hand, but distal to the shoulder xref: FBcv:0000047 xref: FBql:00005868 [Typedef] id: BSPO:0000101 name: surrounds namespace: spatial is_transitive: true inverse_of: BSPO:0000109 ! surrounded_by xref: FBcv:0000048 xref: FBql:00005861 [Typedef] id: BSPO:0000102 name: ventral_to namespace: spatial is_transitive: true inverse_of: BSPO:0000098 ! dorsal_to synonym: "inferior_to" EXACT [] xref: FBcv:0000049 xref: FBql:00005866 [Typedef] id: BSPO:0000103 name: vicinity_of namespace: spatial xref: FBcv:0000050 xref: FBql:00005862 [Typedef] id: BSPO:0000104 name: approximately_perpendicular_to namespace: spatial def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." [] domain: BSPO:0000010 ! anatomical axis range: BSPO:0000010 ! anatomical axis [Typedef] id: BSPO:0000105 name: ipsilateral_to namespace: spatial def: "On the same side as. For example, the left arm is ipsilateral to the left leg." [] is_symmetric: true xref: FBql:00005850 [Typedef] id: BSPO:0000106 name: contralateral_to namespace: spatial def: "On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg)." [] is_symmetric: true xref: FBql:00005851 [Typedef] id: BSPO:0000107 name: deep_to namespace: spatial def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." [] is_transitive: true inverse_of: BSPO:0000108 ! superficial_to [Typedef] id: BSPO:0000108 name: superficial_to namespace: spatial def: "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer." [] is_transitive: true [Typedef] id: BSPO:0000109 name: surrounded_by namespace: spatial is_transitive: true [Typedef] id: BSPO:0000110 name: left_of namespace: spatial def: "Closer to the left side of the organism. The dorsal fin is right of the left pectoral fin, but is left of the right eye." [] is_transitive: true inverse_of: BSPO:0000111 ! right_of [Typedef] id: BSPO:0000111 name: right_of namespace: spatial def: "Closer to the right side of the organism. The dorsal fin is right of the left pectoral fin, but is left of the right eye." [] is_transitive: true [Term] id: BSPO:0000371 name: anterior surface namespace: spatial xref: FBql:00005848 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000055 ! anterior side [Term] id: BSPO:0000372 name: posterior surface namespace: spatial xref: FBql:00005849 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000056 ! posterior side [Term] id: BSPO:0000373 name: apical surface namespace: spatial xref: FBql:00005854 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000057 ! apical side [Term] id: BSPO:0000374 name: basal surface namespace: spatial xref: FBql:00005855 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000058 ! basal side [Term] id: BSPO:0000376 name: contralateral surface namespace: spatial xref: FBql:00005851 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000060 ! contralateral side [Term] id: BSPO:0000377 name: proximal surface namespace: spatial xref: FBql:00005852 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000061 ! proximal side [Term] id: BSPO:0000378 name: distal surface namespace: spatial xref: FBql:00005853 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000062 ! distal side [Term] id: BSPO:0000379 name: dorsal surface namespace: spatial xref: FBql:00005842 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000063 ! dorsal side [Term] id: BSPO:0000381 name: ipsilateral surface namespace: spatial xref: FBql:00005850 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000065 ! ipsilateral side [Term] id: BSPO:0000382 name: lateral surface namespace: spatial xref: FBql:00005844 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000066 ! lateral side [Term] id: BSPO:0000383 name: medial surface namespace: spatial xref: FBql:00005847 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000067 ! medial side [Term] id: BSPO:0000384 name: ventral surface namespace: spatial xref: FBql:00005843 is_a: BSPO:0000005 ! anatomical surface intersection_of: BSPO:0000005 ! anatomical surface intersection_of: surface_of BSPO:0000068 ! ventral side [Term] id: BSPO:0000400 name: anatomical section namespace: spatial def: "A flat 2D plane intersecting an anatomical continuant." [bspo:cjm] comment: These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical. synonym: "anatomical cross-section" EXACT [] synonym: "cross-section" RELATED [] synonym: "plane" EXACT [] synonym: "section" EXACT [] xref: FMA:242982 [Term] id: BSPO:0000417 name: sagittal section namespace: spatial def: "Anatomical section that divides bilateral body into roughly mirror image left and right sections. Bilaterally symmetric organisms have a single sagittal plane." [BSPO:cjm, BSPO:mah] synonym: "left/right plane" EXACT [] synonym: "sagittal plane" EXACT [] xref: FMA:11361 is_a: BSPO:0000400 ! anatomical section [Term] id: BSPO:0000671 name: anterior margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side [Term] id: BSPO:0000672 name: posterior margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side [Term] id: BSPO:0000673 name: apical margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000057 ! apical side [Term] id: BSPO:0000674 name: basal margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000058 ! basal side [Term] id: BSPO:0000677 name: proximal margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000061 ! proximal side [Term] id: BSPO:0000678 name: distal margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000062 ! distal side [Term] id: BSPO:0000679 name: dorsal margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000680 name: dorso-lateral margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000063 ! dorsal side intersection_of: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000682 name: lateral margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000066 ! lateral side [Term] id: BSPO:0000683 name: medial margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000067 ! medial side [Term] id: BSPO:0000684 name: ventral margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000685 name: ventro-lateral margin namespace: spatial comment: This is an example of a composition of two axis positions is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000066 ! lateral side intersection_of: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000686 name: antero-dorsal margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000687 name: postero-dorsal margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000063 ! dorsal side [Term] id: BSPO:0000688 name: antero-ventral margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000055 ! anterior side intersection_of: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0000689 name: postero-ventral margin namespace: spatial is_a: BSPO:0000006 ! anatomical margin intersection_of: BSPO:0000006 ! anatomical margin intersection_of: overlaps BSPO:0000056 ! posterior side intersection_of: overlaps BSPO:0000068 ! ventral side [Term] id: BSPO:0001001 name: medial axis namespace: spatial def: "from centre of organism to one or other side." [] comment: Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than \"left-right\". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart. synonym: "ML axis" EXACT [] synonym: "medio-lateral axis" EXACT [] synonym: "mediolateral axis" EXACT [] xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG is_a: BSPO:0000010 ! anatomical axis [Term] id: CARO:0000000 name: anatomical entity namespace: spatial def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH] [Typedef] id: finishes_axis name: finishes_axis namespace: spatial comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p domain: BSPO:0000054 ! anatomical side range: BSPO:0000010 ! anatomical axis [Typedef] id: follows_axis name: follows_axis namespace: spatial range: BSPO:0000010 ! anatomical axis [Typedef] id: has_end_point name: has_end_point namespace: spatial def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." [] comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point domain: BSPO:0000010 ! anatomical axis range: CARO:0000000 ! anatomical entity [Typedef] id: overlaps name: overlaps def: "x overlaps y iff they have some part in common." [] namespace: spatial formula: "(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF [] [Typedef] id: surface_of name: surface_of domain: BSPO:0000005 ! anatomical surface comment: placeholder. used for relation between anatomical surface and an anatomical side. [Typedef] id: has_start_point name: has_start_point namespace: spatial def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." [] comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point domain: BSPO:0000010 ! anatomical axis range: CARO:0000000 ! anatomical entity [Typedef] id: opposite_to name: opposite_to namespace: spatial def: "Direcly opposite to. i.e. on the opposite side through the axis." [] is_a: BSPO:0000105 ! ipsilateral_to [Typedef] id: orthogonal_to name: orthogonal_to namespace: spatial def: "crossing at right angles" [BSPO:cjm] domain: BSPO:0000010 ! anatomical axis range: BSPO:0000400 ! anatomical section [Typedef] id: passes_through name: passes_through namespace: spatial def: "Intersects at two points." [] domain: BSPO:0000010 ! anatomical axis [Typedef] id: starts_axis name: starts_axis namespace: spatial comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p domain: BSPO:0000054 ! anatomical side range: BSPO:0000010 ! anatomical axis