format-version: 1.2
date: 16:06:2009 08:53
saved-by: Melissa Haendel
auto-generated-by: OBO-Edit 2.0
synonymtypedef: vertebrate "synonym typically used in the context of vertebrate anatomy" NARROW
default-namespace: spatial
remark: based on FBql
[Term]
id: BSPO:0000000
name: left side
synonym: "left" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: BSPO:0000110 BSPO:0000007 ! right side
relationship: starts_axis BSPO:0000017 ! left/right axis
[Term]
id: BSPO:0000001
name: upper side
synonym: "upper" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: starts_axis BSPO:0000011 ! upper/lower axis
[Term]
id: BSPO:0000002
name: lower side
synonym: "lower" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000011 ! upper/lower axis
[Term]
id: BSPO:00000021
name: deep-superficial gradient (obsolete)
comment: was made obsolete because the ID had too many digits
is_obsolete: true
replaced_by: BSPO:0000021
[Term]
id: BSPO:0000003
name: deep side
synonym: "deep" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: BSPO:0000107 BSPO:0000004 ! superficial side
relationship: starts_axis BSPO:0000012 ! deep/superficial axis
[Term]
id: BSPO:0000004
name: superficial side
synonym: "superficial" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000012 ! deep/superficial axis
[Term]
id: BSPO:0000005
name: anatomical surface
def: "A 2D surface of an anatomical continuant" [BSPO:cjm]
comment: to be merged into CARO
synonym: "surface" EXACT []
[Term]
id: BSPO:0000006
name: anatomical margin
def: "fiat region extending a short distance from the boundary of an object inwards" [BSPO:cjm]
synonym: "edge" EXACT []
synonym: "margin" EXACT []
is_a: BSPO:0000070 ! anatomical region
[Term]
id: BSPO:0000007
name: right side
synonym: "right" EXACT []
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000017 ! left/right axis
[Term]
id: BSPO:0000008
name: parasagittal section
def: "Sagittal section that divides bilateral body into unequal equal left and right sections." [BSPO:mah]
is_a: BSPO:0000417 ! sagittal section
[Term]
id: BSPO:0000009
name: midsaggital section
def: "Sagittal section that divides bilateral body into equal left and right sections." [BSPO:mah]
synonym: "median plane" RELATED []
synonym: "median sagittal plane" EXACT []
synonym: "midsagittal plane" EXACT []
xref: FMA:74563
is_a: BSPO:0000417 ! sagittal section
[Term]
id: BSPO:0000010
name: anatomical axis
def: "A straight line through space, intersecting an anatomical entity." [BSPO:cjm]
comment: axis directions are defined in terms of axes
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
relationship: passes_through CARO:0000000 ! anatomical entity
[Term]
id: BSPO:0000011
name: upper/lower axis
def: "An anatomical axis determined by gravity." [BSPO:cjm]
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000012
name: deep/superficial axis
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000013
name: anterior/posterior axis
def: "An axis that bisects an organism from head end to opposite end of body or tail." []
synonym: "A-P axis" EXACT []
synonym: "anteroposterior axis" EXACT []
synonym: "AP axis" EXACT []
synonym: "cephalocaudal axis" NARROW [http://en.wikipedia.org/wiki/Anatomical_terms_of_location]
synonym: "craniocaudal axis" NARROW vertebrate []
synonym: "rostral/caudal" NARROW vertebrate []
synonym: "rostrocaudal axis" NARROW vertebrate []
is_a: BSPO:0000010 ! anatomical axis
relationship: approximately_perpendicular_to BSPO:0000016 ! dorsal/ventral axis
[Term]
id: BSPO:0000014
name: apical/basal axis
comment: In plants, this is the axis that runs from the shoot to the root.
synonym: "apical/basal" EXACT []
synonym: "longitudinal axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000015
name: proximal/distal axis
def: "from tip of an appendage (distal) to where it joins the body (proximal)." [http://en.wikipedia.org/wiki/Anatomical_terms_of_location]
synonym: "proximal/distal" EXACT []
synonym: "proximodistal" EXACT []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000016
name: dorsal/ventral axis
def: "An axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." []
synonym: "dorsoventral axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: BSPO:0000017
name: left/right axis
def: "An axis that bisects an organism from left to right sides of body, through a sagittal section." []
synonym: "dextro-sinister axis" EXACT []
synonym: "left to right axis" EXACT []
is_a: BSPO:0000010 ! anatomical axis
intersection_of: BSPO:0000010 ! anatomical axis
intersection_of: orthogonal_to BSPO:0000417 ! sagittal section
[Term]
id: BSPO:0000018
name: transverse section
def: "Anatomical section that divides body into anterior and posterior sections." [BSPO:mah]
synonym: "axial plane" EXACT []
synonym: "axial section" EXACT []
synonym: "cross-section" RELATED []
synonym: "transverse plane" EXACT []
xref: FMA:12247
is_a: BSPO:0000400 ! anatomical section
[Term]
id: BSPO:0000019
name: horizontal section
def: "Anatomical section that divides bilateral body into dorsal and ventral sections." [BSPO:mah]
synonym: "coronal section" RELATED []
synonym: "frontal section" RELATED []
xref: FMA:52810
is_a: BSPO:0000400 ! anatomical section
[Term]
id: BSPO:0000020
name: upper-lower gradient
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000011 ! upper/lower axis
[Term]
id: BSPO:0000021
name: deep-superficial gradient
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000012 ! deep/superficial axis
[Term]
id: BSPO:0000022
name: superior side
synonym: "superior" EXACT []
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000023
name: apical-basal gradient
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000014 ! apical/basal axis
[Term]
id: BSPO:0000024
name: proximal-distal gradient
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: follows_axis BSPO:0000015 ! proximal/distal axis
[Term]
id: BSPO:0000025
name: inferior side
synonym: "inferior" EXACT []
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000026
name: antero-dorsal region
synonym: "anterodorsal region " EXACT []
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:01:38Z
[Term]
id: BSPO:0000027
name: antero-ventral region
synonym: "anteroventral region " EXACT []
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:04:59Z
[Term]
id: BSPO:0000028
name: postero-lateral region
synonym: "posterolateral region" EXACT []
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:06:01Z
[Term]
id: BSPO:0000029
name: antero-lateral region
synonym: "anterolateral region" EXACT []
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000066 ! lateral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:07:18Z
[Term]
id: BSPO:0000030
name: postero-dorsal region
synonym: "posterodorsal region" EXACT []
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:08:13Z
[Term]
id: BSPO:0000031
name: upper region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000001 ! upper side
[Term]
id: BSPO:0000032
name: lower region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000002 ! lower side
[Term]
id: BSPO:0000033
name: deep region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000003 ! deep side
[Term]
id: BSPO:0000034
name: superficial region
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000004 ! superficial side
[Term]
id: BSPO:0000035
name: postero-ventral region
synonym: "posteroventral region" EXACT []
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
created_by: Melissa Haendel
creation_date: 2009-06-15T01:08:38Z
[Term]
id: BSPO:0000036
name: anterior-most
synonym: "anteriormost" EXACT []
is_a: BSPO:0000071 ! anterior region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:49:03Z
[Term]
id: BSPO:0000037
name: posterior-most
synonym: "posteriormost" EXACT []
is_a: BSPO:0000072 ! posterior region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:49:50Z
[Term]
id: BSPO:0000038
name: dorsal-most
synonym: "dorsalmost" EXACT []
is_a: BSPO:0000079 ! dorsal region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:50:26Z
[Term]
id: BSPO:0000039
name: ventral-most
synonym: "ventralmost" EXACT []
is_a: BSPO:0000084 ! ventral region
created_by: Melissa Haendel
creation_date: 2009-06-16T08:51:07Z
[Term]
id: BSPO:0000040
name: upper/lower compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000011 ! upper/lower axis
[Term]
id: BSPO:0000041
name: deep/superficial compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000012 ! deep/superficial axis
[Term]
id: BSPO:0000043
name: apical/basal compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000014 ! apical/basal axis
[Term]
id: BSPO:0000044
name: proximal/distal compartment boundary
is_a: BSPO:0000092 ! anatomical compartment boundary
intersection_of: BSPO:0000092 ! anatomical compartment boundary
intersection_of: has_axis BSPO:0000015 ! proximal/distal axis
[Term]
id: BSPO:0000051
name: anatomical gradient
def: "A region defined by change in the value of some quantity per unit of distance across some spatial axis." [BSPO:cjm]
xref: FBql:00005254
[Term]
id: BSPO:0000052
name: anterior-posterior gradient
xref: FBcv:0000142
xref: FBql:00005256
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: has_axis BSPO:0000013 ! anterior/posterior axis
[Term]
id: BSPO:0000053
name: dorsal-ventral gradient
xref: FBcv:0000143
xref: FBql:00005255
is_a: BSPO:0000051 ! anatomical gradient
intersection_of: BSPO:0000051 ! anatomical gradient
intersection_of: has_axis BSPO:0000016 ! dorsal/ventral axis
[Term]
id: BSPO:0000054
name: anatomical side
def: "An anatomical region bounded by a plane perpendicular to an axis through the middle." [BSPO:cjm]
xref: FBql:00005841
[Term]
id: BSPO:0000055
name: anterior side
synonym: "anterior" EXACT []
synonym: "rostral" EXACT []
xref: FBcv:0000053
xref: FBql:00005848
is_a: BSPO:0000054 ! anatomical side
relationship: BSPO:0000096 BSPO:0000056 ! posterior side
relationship: opposite_to BSPO:0000056 ! posterior side
relationship: starts_axis BSPO:0000013 ! anterior/posterior axis
[Term]
id: BSPO:0000056
name: posterior side
synonym: "caudal" NARROW vertebrate []
synonym: "posterior" EXACT []
xref: FBcv:0000065
xref: FBql:00005849
is_a: BSPO:0000054 ! anatomical side
relationship: BSPO:0000099 BSPO:0000055 ! anterior side
relationship: finishes_axis BSPO:0000013 ! anterior/posterior axis
[Term]
id: BSPO:0000057
name: apical side
synonym: "apical" EXACT []
xref: FBcv:0000054
xref: FBql:00005854
is_a: BSPO:0000054 ! anatomical side
relationship: opposite_to BSPO:0000058 ! basal side
relationship: starts_axis BSPO:0000014 ! apical/basal axis
[Term]
id: BSPO:0000058
name: basal side
comment: The part of the organism attached to a substrate. Axis of symmetry.
synonym: "basal" EXACT []
xref: FBcv:0000055
xref: FBql:00005855
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000014 ! apical/basal axis
[Term]
id: BSPO:0000059
name: central side
comment: central is not an axis direction
synonym: "central" EXACT []
xref: FBcv:0000056
xref: FBql:00015851
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000060
name: contralateral side
def: "On the opposite side" [BSPO:cjm]
comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
synonym: "contralateral" EXACT []
xref: FBcv:0000057
xref: FBql:00005851
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000061
name: proximal side
synonym: "proximal" EXACT []
xref: FBcv:0000066
xref: FBql:00005852
is_a: BSPO:0000054 ! anatomical side
relationship: opposite_to BSPO:0000062 ! distal side
relationship: starts_axis BSPO:0000015 ! proximal/distal axis
[Term]
id: BSPO:0000062
name: distal side
synonym: "distal" EXACT []
xref: FBcv:0000058
xref: FBql:00005853
is_a: BSPO:0000054 ! anatomical side
relationship: BSPO:0000097 BSPO:0000061 ! proximal side
relationship: finishes_axis BSPO:0000015 ! proximal/distal axis
[Term]
id: BSPO:0000063
name: dorsal side
comment: rename to 'dorsally located'?
synonym: "dorsal" EXACT []
xref: FBcv:0000059
xref: FBql:00005842
is_a: BSPO:0000054 ! anatomical side
relationship: BSPO:0000098 BSPO:0000066 ! lateral side
relationship: opposite_to BSPO:0000068 ! ventral side
relationship: starts_axis BSPO:0000016 ! dorsal/ventral axis
[Term]
id: BSPO:0000065
name: ipsilateral side
def: "On the same side" [BSPO:cjm]
comment: inherited from flybase cv. not clear how this would be used. Suggest we obsolete, and use the corresponding relation.
synonym: "ipsilateral" EXACT []
xref: FBcv:0000062
xref: FBql:00005850
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000066
name: lateral side
synonym: "lateral" EXACT []
xref: FBcv:0000063
xref: FBql:00005844
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000067
name: medial side
comment: a point in the centre of the organism (where the left-right axis intersects the midsagittal plane)
synonym: "medial" EXACT []
xref: FBcv:0000064
xref: FBql:00005847
is_a: BSPO:0000054 ! anatomical side
[Term]
id: BSPO:0000068
name: ventral side
synonym: "ventral" EXACT []
xref: FBcv:0000070
xref: FBql:00005843
is_a: BSPO:0000054 ! anatomical side
relationship: finishes_axis BSPO:0000016 ! dorsal/ventral axis
[Term]
id: BSPO:0000070
name: anatomical region
def: "A 3D region in space without well-defined compartmental boundaries; for example, the dorsal region of an ectoderm." [BSPO:cjm]
comment: to be merged into CARO
xref: FBql:00005841
[Term]
id: BSPO:0000071
name: anterior region
xref: FBql:00005848
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000072
name: posterior region
xref: FBql:00005849
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000056 ! posterior side
[Term]
id: BSPO:0000073
name: apical region
xref: FBql:00005854
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000057 ! apical side
[Term]
id: BSPO:0000074
name: basal region
xref: FBql:00005855
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000058 ! basal side
[Term]
id: BSPO:0000075
name: central region
xref: FBql:00015851
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000059 ! central side
[Term]
id: BSPO:0000076
name: contralateral region
comment: inherited from flybase cv. not clear how this would be used
xref: FBql:00005851
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000060 ! contralateral side
[Term]
id: BSPO:0000077
name: proximal region
xref: FBql:00005852
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000061 ! proximal side
[Term]
id: BSPO:0000078
name: distal region
xref: FBql:00005853
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000062 ! distal side
[Term]
id: BSPO:0000079
name: dorsal region
xref: FBql:00005842
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000080
name: dorso-lateral region
synonym: "dorsolateral region" EXACT []
xref: FBql:00005845
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000081
name: ipsilateral region
xref: FBql:00005850
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000065 ! ipsilateral side
[Term]
id: BSPO:0000082
name: lateral region
xref: FBql:00005844
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000083
name: medial region
xref: FBql:00005847
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000067 ! medial side
[Term]
id: BSPO:0000084
name: ventral region
xref: FBql:00005843
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000085
name: ventro-lateral region
comment: This is an example of a composition of two axis positions
synonym: "ventrolateral region" EXACT []
xref: FBql:00005846
is_a: BSPO:0000070 ! anatomical region
intersection_of: BSPO:0000070 ! anatomical region
intersection_of: overlaps BSPO:0000066 ! lateral side
intersection_of: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000086
name: anatomical compartment
comment: to be merged into CARO
xref: FBql:00005873
[Term]
id: BSPO:0000087
name: anterior compartment
xref: FBcv:0000031
xref: FBql:00005874
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000088
name: compartment boundary
xref: FBcv:0000032
xref: FBql:00005878
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000089
name: dorsal compartment
xref: FBcv:0000035
xref: FBql:00005876
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000090
name: posterior compartment
xref: FBcv:0000036
xref: FBql:00005875
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000091
name: ventral compartment
xref: FBcv:0000037
xref: FBql:00005877
is_a: BSPO:0000086 ! anatomical compartment
[Term]
id: BSPO:0000092
name: anatomical compartment boundary
comment: to be merged into CARO
xref: FBql:00005881
[Term]
id: BSPO:0000093
name: anterior/posterior compartment boundary
xref: FBcv:0000033
xref: FBql:00005880
is_a: BSPO:0000092 ! anatomical compartment boundary
[Term]
id: BSPO:0000094
name: dorsal/ventral compartment boundary
xref: FBcv:0000034
xref: FBql:00005879
is_a: BSPO:0000092 ! anatomical compartment boundary
[Term]
id: BSPO:0000371
name: anterior surface
xref: FBql:00005848
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000372
name: posterior surface
xref: FBql:00005849
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000056 ! posterior side
[Term]
id: BSPO:0000373
name: apical surface
xref: FBql:00005854
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000057 ! apical side
[Term]
id: BSPO:0000374
name: basal surface
xref: FBql:00005855
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000058 ! basal side
[Term]
id: BSPO:0000376
name: contralateral surface
xref: FBql:00005851
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000060 ! contralateral side
[Term]
id: BSPO:0000377
name: proximal surface
xref: FBql:00005852
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000061 ! proximal side
[Term]
id: BSPO:0000378
name: distal surface
xref: FBql:00005853
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000062 ! distal side
[Term]
id: BSPO:0000379
name: dorsal surface
xref: FBql:00005842
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000381
name: ipsilateral surface
xref: FBql:00005850
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000065 ! ipsilateral side
[Term]
id: BSPO:0000382
name: lateral surface
xref: FBql:00005844
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000383
name: medial surface
xref: FBql:00005847
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000067 ! medial side
[Term]
id: BSPO:0000384
name: ventral surface
xref: FBql:00005843
is_a: BSPO:0000005 ! anatomical surface
intersection_of: BSPO:0000005 ! anatomical surface
intersection_of: surface_of BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000400
name: anatomical section
def: "A flat 2D plane intersecting an anatomical continuant." [bspo:cjm]
comment: These anatomical sections are applicable to most bilaterally symmetrical animals, but bipedal animals such as humans have more complex usage of these terms. For example, in post-embryonic humans a coronal plane is vertical and a transverse plane is horizontal, but for embryos and quadrupeds a coronal plane is horizontal and a transverse plane is vertical.
synonym: "anatomical cross-section" EXACT []
synonym: "cross-section" RELATED []
synonym: "plane" EXACT []
synonym: "section" EXACT []
xref: FMA:242982
[Term]
id: BSPO:0000417
name: sagittal section
def: "Anatomical section that divides bilateral body into roughly mirror image left and right sections. Bilaterally symmetric organisms have a single sagittal plane." [BSPO:cjm, BSPO:mah]
synonym: "left/right plane" EXACT []
synonym: "sagittal plane" EXACT []
xref: FMA:11361
is_a: BSPO:0000400 ! anatomical section
[Term]
id: BSPO:0000671
name: anterior margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
[Term]
id: BSPO:0000672
name: posterior margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
[Term]
id: BSPO:0000673
name: apical margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000057 ! apical side
[Term]
id: BSPO:0000674
name: basal margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000058 ! basal side
[Term]
id: BSPO:0000677
name: proximal margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000061 ! proximal side
[Term]
id: BSPO:0000678
name: distal margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000062 ! distal side
[Term]
id: BSPO:0000679
name: dorsal margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000680
name: dorso-lateral margin
synonym: "dorsolateral margin" EXACT []
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000063 ! dorsal side
intersection_of: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000682
name: lateral margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000066 ! lateral side
[Term]
id: BSPO:0000683
name: medial margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000067 ! medial side
[Term]
id: BSPO:0000684
name: ventral margin
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000685
name: ventro-lateral margin
comment: This is an example of a composition of two axis positions
synonym: "ventrolateral margin" EXACT []
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000066 ! lateral side
intersection_of: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000686
name: antero-dorsal margin
synonym: "anterodorsal margin" EXACT []
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000687
name: postero-dorsal margin
synonym: "posterodorsal margin" EXACT []
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000063 ! dorsal side
[Term]
id: BSPO:0000688
name: antero-ventral margin
synonym: "anteroventral margin" EXACT []
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000055 ! anterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0000689
name: postero-ventral margin
synonym: "posteroventral margin" EXACT []
is_a: BSPO:0000006 ! anatomical margin
intersection_of: BSPO:0000006 ! anatomical margin
intersection_of: overlaps BSPO:0000056 ! posterior side
intersection_of: overlaps BSPO:0000068 ! ventral side
[Term]
id: BSPO:0001001
name: medial axis
def: "from centre of organism to one or other side." []
comment: Properly, the ML axis is a half axis; practically, its usage is less clumsy and less linguistically biased than "left-right". The terms may still be used relatively to describe locations along the LR axis. The gills are medial to the operculum, but lateral to the heart.
synonym: "medio-lateral axis" EXACT []
synonym: "mediolateral axis" EXACT []
synonym: "ML axis" EXACT []
xref: http://upload.wikimedia.org/wikipedia/commons/3/34/Anatomical_Directions_and_Axes.JPG
is_a: BSPO:0000010 ! anatomical axis
[Term]
id: CARO:0000000
name: anatomical entity
def: "Biological entity that is either an individual member of a biological species or constitutes the structural organization of an individual member of a biological species." [CARO:MAH]
[Typedef]
id: BSPO:0000095
name: anatomical_relation
xref: FBql:00005860
is_obsolete: true
[Typedef]
id: BSPO:0000096
name: anterior_to
synonym: "rostral_to" EXACT []
xref: FBcv:0000039
xref: FBql:00005863
is_transitive: true
inverse_of: BSPO:0000099 ! posterior_to
[Typedef]
id: BSPO:0000097
name: distal_to
xref: FBcv:0000040
xref: FBql:00005867
is_transitive: true
inverse_of: BSPO:0000100 ! proximal_to
[Typedef]
id: BSPO:0000098
name: dorsal_to
synonym: "superior_to" EXACT []
xref: FBcv:0000041
xref: FBql:00005865
is_transitive: true
inverse_of: BSPO:0000102 ! ventral_to
[Typedef]
id: BSPO:0000099
name: posterior_to
synonym: "caudal_to" NARROW vertebrate []
xref: FBcv:0000045
xref: FBql:00005864
is_transitive: true
inverse_of: BSPO:0000096 ! anterior_to
[Typedef]
id: BSPO:0000100
name: proximal_to
def: "x proximal_to y iff x is closer to the point of attachment with the body than y." []
comment: The elbow is proximal to the hand, but distal to the shoulder
xref: FBcv:0000047
xref: FBql:00005868
is_transitive: true
inverse_of: BSPO:0000097 ! distal_to
[Typedef]
id: BSPO:0000101
name: surrounds
xref: FBcv:0000048
xref: FBql:00005861
is_transitive: true
inverse_of: BSPO:0000109 ! surrounded_by
[Typedef]
id: BSPO:0000102
name: ventral_to
synonym: "inferior_to" EXACT []
xref: FBcv:0000049
xref: FBql:00005866
is_transitive: true
inverse_of: BSPO:0000098 ! dorsal_to
[Typedef]
id: BSPO:0000103
name: vicinity_of
xref: FBcv:0000050
xref: FBql:00005862
[Typedef]
id: BSPO:0000104
name: approximately_perpendicular_to
def: "Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole." []
domain: BSPO:0000010 ! anatomical axis
range: BSPO:0000010 ! anatomical axis
[Typedef]
id: BSPO:0000105
name: ipsilateral_to
def: "On the same side as. For example, the left arm is ipsilateral to the left leg." []
xref: FBql:00005850
is_symmetric: true
[Typedef]
id: BSPO:0000106
name: contralateral_to
def: "On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg)." []
xref: FBql:00005851
is_symmetric: true
[Typedef]
id: BSPO:0000107
name: deep_to
def: "Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines." []
is_transitive: true
inverse_of: BSPO:0000108 ! superficial_to
[Typedef]
id: BSPO:0000108
name: superficial_to
def: "Near the outer surface of the organism. Thus, skin is superficial to the muscle layer." []
is_transitive: true
[Typedef]
id: BSPO:0000109
name: surrounded_by
is_transitive: true
[Typedef]
id: BSPO:0000110
name: left_of
def: "Closer to the left side of the organism. The dorsal fin is right of the left pectoral fin, but is left of the right eye." []
is_transitive: true
inverse_of: BSPO:0000111 ! right_of
[Typedef]
id: BSPO:0000111
name: right_of
def: "Closer to the right side of the organism. The dorsal fin is right of the left pectoral fin, but is left of the right eye." []
is_transitive: true
[Typedef]
id: finishes_axis
name: finishes_axis
comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. If s finishes_axis x, and x has_end_point p, then x overlaps p
domain: BSPO:0000054 ! anatomical side
range: BSPO:0000010 ! anatomical axis
[Typedef]
id: follows_axis
name: follows_axis
range: BSPO:0000010 ! anatomical axis
[Typedef]
id: has_end_point
name: has_end_point
def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." []
comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a end and end point
domain: BSPO:0000010 ! anatomical axis
range: CARO:0000000 ! anatomical entity
[Typedef]
id: has_start_point
name: has_start_point
def: "A relation between an axis and a part of an organism, in which the part defines the initial point of the axis." []
comment: Axes can be defined in a given species by subtyping the relevant axis type and stating a start and end point
domain: BSPO:0000010 ! anatomical axis
range: CARO:0000000 ! anatomical entity
[Typedef]
id: opposite_to
name: opposite_to
def: "Direcly opposite to. i.e. on the opposite side through the axis." []
is_a: BSPO:0000105 ! ipsilateral_to
[Typedef]
id: orthogonal_to
name: orthogonal_to
def: "crossing at right angles" [BSPO:cjm]
domain: BSPO:0000010 ! anatomical axis
range: BSPO:0000400 ! anatomical section
[Typedef]
id: overlaps
name: overlaps
def: "x overlaps y iff they have some part in common." []
formula: "(forall (x y) (iff (overlaps x y) (exists (z) (and (part_of z x) (part_of z y)))))" CLIF []
[Typedef]
id: passes_through
name: passes_through
def: "Intersects at two points." []
domain: BSPO:0000010 ! anatomical axis
[Typedef]
id: starts_axis
name: starts_axis
comment: A directional axis can be divided by a plane. Following Allen Interval Algebra terminology we say that the side on which the axis initiates starts the axis, with the other side finishing the axis. . If s starts_axis x, and x has_start_point p, then x overlaps p
domain: BSPO:0000054 ! anatomical side
range: BSPO:0000010 ! anatomical axis
[Typedef]
id: surface_of
name: surface_of
comment: placeholder. used for relation between anatomical surface and an anatomical side.
domain: BSPO:0000005 ! anatomical surface