83
187
74
http://purl.obolibrary.org/obo/COA_0000043
user defined data set for COG enrichment analysis
'user defined data set for COG enrichment analysis' SubClassOf 'is_specified_input_of' some 'COG enrichment data transformation'
'user defined data set for COG enrichment analysis' EquivalentTo http://purl.obolibrary.org/obo/OBI_0000023 and ('has part' some
('user defined protein list clustered by COG category' or 'user defined protein list clustered by non-COG category')) and ('has part' only
('user defined protein list clustered by COG category' or 'user defined protein list clustered by non-COG category'))
http://purl.obolibrary.org/obo/COA_0000044
user defined gene list with COG annotation
'user defined gene list with COG annotation' SubClassOf 'user defined data set for COG enrichment analysis'
http://purl.obolibrary.org/obo/COA_0000041
Fisher's exact test for COG enrichment data transforamtion
'Fisher's exact test for COG enrichment data transforamtion' SubClassOf 'is part of' some 'COG enrichment data transformation'
'Fisher's exact test for COG enrichment data transforamtion' SubClassOf http://purl.obolibrary.org/obo/OBI_0200176
http://purl.obolibrary.org/obo/COA_0000040
COG enrichment score of Fisher test
'COG enrichment score of Fisher test' SubClassOf 'data item'
'COG enrichment score of Fisher test' SubClassOf 'p value of COG enrichment score' some http://www.w3.org/2001/XMLSchema#float
'COG enrichment score of Fisher test' SubClassOf http://purl.obolibrary.org/obo/OBI_0000312 some 'Fisher's exact test for COG enrichment data transforamtion'
'COG enrichment score of Fisher test' SubClassOf 'is about' some 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/BFO_0000005
dependent continuant
'dependent continuant' SubClassOf 'continuant'
http://purl.obolibrary.org/obo/COA_0000007
Translation, ribosomal structure and biogenesis
'Translation, ribosomal structure and biogenesis' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000008
RNA processing and modification
'RNA processing and modification' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000005
COG annotation
'COG annotation' SubClassOf 'information content entity'
'COG annotation' SubClassOf 'is about' some 'protein'
http://purl.obolibrary.org/obo/COA_0000049
COG mapping data transformation
'COG mapping data transformation' SubClassOf 'is part of' some 'COG enrichment data transformation'
'COG mapping data transformation' SubClassOf 'has specified input' some 'user defined data set for COG enrichment analysis'
'COG mapping data transformation' SubClassOf 'has_specified_output' some 'user defined protein list clustered by COG category'
'COG mapping data transformation' SubClassOf http://purl.obolibrary.org/obo/OBI_0200175
http://purl.obolibrary.org/obo/BFO_0000003
occurrent
'occurrent' SubClassOf 'entity'
http://purl.obolibrary.org/obo/BFO_0000004
independent continuant
'independent continuant' SubClassOf 'continuant'
http://purl.obolibrary.org/obo/COA_0000006
COG Functional category
'COG Functional category' SubClassOf 'is about' some 'COG annotation'
'COG Functional category' SubClassOf 'is about' some 'COG category clustered data set'
'COG Functional category' SubClassOf 'information content entity'
'COG Functional category' SubClassOf 'is about' some 'protein'
http://purl.obolibrary.org/obo/COA_0000003
protein database identifier
'protein database identifier' SubClassOf 'symbol'
http://purl.obolibrary.org/obo/COA_0000048
protein congregate
'protein congregate' SubClassOf 'independent continuant'
'protein congregate' SubClassOf 'has_member' some 'protein'
http://purl.obolibrary.org/obo/COA_0000004
gene database indentifier
'gene database indentifier' SubClassOf 'symbol'
http://purl.obolibrary.org/obo/COA_0000045
user defined protein list with COG annotation
'user defined protein list with COG annotation' SubClassOf 'is about' some 'user defined protein congregate'
'user defined protein list with COG annotation' SubClassOf 'user defined data set for COG enrichment analysis'
http://purl.obolibrary.org/obo/BFO_0000007
process
'process' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/COA_0000002
COG category clustered data set
'COG category clustered data set' SubClassOf http://purl.obolibrary.org/obo/OBI_0000648
http://purl.obolibrary.org/obo/COA_0000046
COG enrichment analyzed data set
'COG enrichment analyzed data set' SubClassOf 'data set'
http://purl.obolibrary.org/obo/BFO_0000008
temporal region
'temporal region' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/COA_0000009
Transcription
'Transcription' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000032
Secondary metabolites biosynthesis, transport and catabolism
'Secondary metabolites biosynthesis, transport and catabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000033
poorly characterized
'poorly characterized' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/COA_0000030
Lipid transport and metabolism
'Lipid transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000031
Inorganic ion transport and metabolism
'Inorganic ion transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/BFO_0000038
temporal interval
'temporal interval' SubClassOf 'connected temporal region'
http://purl.obolibrary.org/obo/COA_0000038
gene
'gene' SubClassOf 'genetic material'
http://purl.obolibrary.org/obo/COA_0000039
COG enrichment data transformation
'COG enrichment data transformation' SubClassOf 'has specified input' some 'user defined data set for COG enrichment analysis'
'COG enrichment data transformation' SubClassOf 'has_specified_output' some 'COG enrichment analyzed data set'
'COG enrichment data transformation' SubClassOf http://purl.obolibrary.org/obo/OBI_0200000
'COG enrichment data transformation' SubClassOf 'has part' some 'Fisher's exact test for COG enrichment data transforamtion'
http://purl.obolibrary.org/obo/COA_0000037
genetic material
'genetic material' SubClassOf 'molecular entity'
http://purl.obolibrary.org/obo/OBI_0000023
http://purl.obolibrary.org/obo/OBI_0000023 SubClassOf 'data set'
http://purl.obolibrary.org/obo/OBI_0000023 EquivalentTo http://purl.obolibrary.org/obo/OBI_0000312 some http://purl.obolibrary.org/obo/OBI_0000663
http://purl.obolibrary.org/obo/COA_0000034
General function prediction only
'General function prediction only' SubClassOf 'poorly characterized'
http://purl.obolibrary.org/obo/COA_0000035
Function unknown
'Function unknown' SubClassOf 'poorly characterized'
http://purl.obolibrary.org/obo/BFO_0000040
material entity
'material entity' SubClassOf 'independent continuant'
http://purl.obolibrary.org/obo/OBI_0200175
http://purl.obolibrary.org/obo/OBI_0200175 SubClassOf http://purl.obolibrary.org/obo/OBI_0200000
http://purl.obolibrary.org/obo/OBI_0200175 EquivalentTo ('has_specified_output' some http://purl.obolibrary.org/obo/OBI_0000648) or (http://purl.obolibrary.org/obo/OBI_0000417 some http://purl.obolibrary.org/obo/OBI_0200178)
http://purl.obolibrary.org/obo/BFO_0000002
continuant
'continuant' SubClassOf 'entity'
http://purl.obolibrary.org/obo/OBI_0200176
http://purl.obolibrary.org/obo/OBI_0200176 SubClassOf http://purl.obolibrary.org/obo/OBI_0000673
http://purl.obolibrary.org/obo/OBI_0200176 SubClassOf http://purl.obolibrary.org/obo/OBI_0000417 some http://purl.obolibrary.org/obo/OBI_0000675
http://purl.obolibrary.org/obo/COA_0000021
Extracellular structures
'Extracellular structures' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000022
Intracellular trafficking, secretion, and vesicular transport
'Intracellular trafficking, secretion, and vesicular transport' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000020
Cytoskeleton
'Cytoskeleton' SubClassOf 'cellular processes and signaling'
http://purl.org/obo/owl/PRO#PRO_000000001
protein
'protein' SubClassOf 'is_member_of' some 'protein congregate'
'protein' SubClassOf http://purl.obolibrary.org/obo/CAO_0000059 some http://purl.obolibrary.org/obo/CAO_0000048
http://purl.org/obo/owl/CHEBI#CHEBI_23367
molecular entity
'molecular entity' SubClassOf 'material entity'
'molecular entity' SubClassOf http://www.ifomis.org/bfo/1.1/snap#MaterialEntity
http://purl.obolibrary.org/obo/COA_0000029
Coenzyme transport and metabolism
'Coenzyme transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000027
Amino acid transport and metabolism
'Amino acid transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/BFO_0000025
object boundary
'object boundary' SubClassOf 'independent continuant'
http://purl.obolibrary.org/obo/COA_0000028
Nucleotide transport and metabolism
'Nucleotide transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000025
Energy production and conversion
'Energy production and conversion' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000026
Carbohydrate transport and metabolism
'Carbohydrate transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/BFO_0000029
site
'site' SubClassOf 'independent continuant'
http://purl.obolibrary.org/obo/COA_0000023
Posttranslational modification, protein turnover, chaperones
'Posttranslational modification, protein turnover, chaperones' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000024
metabolism
'metabolism' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/BFO_0000031
generically dependent continuant
'generically dependent continuant' SubClassOf 'dependent continuant'
http://purl.obolibrary.org/obo/BFO_0000034
function
'function' SubClassOf 'disposition'
http://purl.obolibrary.org/obo/IAO_0000033
directive information entity
'directive information entity' SubClassOf 'is about' some 'realizable entity'
http://purl.obolibrary.org/obo/BFO_0000035
process boundary
'process boundary' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/BFO_0000032
scattered temporal region
'scattered temporal region' SubClassOf 'temporal region'
http://purl.obolibrary.org/obo/OBI_0200000
http://purl.obolibrary.org/obo/OBI_0200000 SubClassOf http://purl.obolibrary.org/obo/OBI_0000011
http://purl.obolibrary.org/obo/IAO_0000030
information content entity
'information content entity' SubClassOf 'generically dependent continuant'
'information content entity' SubClassOf 'is about' some 'entity'
'information content entity' SubClassOf http://www.ifomis.org/bfo/1.1/snap#GenericallyDependentContinuant
http://purl.obolibrary.org/obo/COA_0000010
Replication, recombination and repair
'Replication, recombination and repair' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000054
background data set clustered by COG category
'background data set clustered by COG category' DisjointWith 'background data set clustered by non-COG category'
'background data set clustered by COG category' SubClassOf 'COG category clustered data set'
http://purl.obolibrary.org/obo/COA_0000055
user defined protein congregate
'user defined protein congregate' SubClassOf 'protein congregate'
http://purl.obolibrary.org/obo/COA_0000011
Chromatin structure and dynamics
'Chromatin structure and dynamics' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000053
background data set clustered COG category by sepecies
'background data set clustered COG category by sepecies' EquivalentTo http://purl.obolibrary.org/obo/OBI_0000023 and ('has part' some
('background data set clustered by COG category' or 'background data set clustered by non-COG category')) and ('has part' only
('background data set clustered by COG category' or 'background data set clustered by non-COG category'))
http://purl.obolibrary.org/obo/COA_0000050
user defined protein list clustered by COG category
'user defined protein list clustered by COG category' SubClassOf 'COG category clustered data set'
'user defined protein list clustered by COG category' SubClassOf 'is about' some 'protein congregate'
'user defined protein list clustered by COG category' SubClassOf 'is part of' some 'user defined data set for COG enrichment analysis'
'user defined protein list clustered by COG category' DisjointWith 'user defined protein list clustered by non-COG category'
http://purl.obolibrary.org/obo/BFO_0000016
disposition
'disposition' SubClassOf 'realizable entity'
http://purl.obolibrary.org/obo/COA_0000018
Cell wall/membrane/envelope biogenesis
'Cell wall/membrane/envelope biogenesis' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000019
Cell motility
'Cell motility' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/BFO_0000017
realizable entity
'realizable entity' SubClassOf 'specifically dependent continuant'
http://purl.obolibrary.org/obo/COA_0000016
Defense mechanisms
' Defense mechanisms' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000017
Signal transduction mechanisms
'Signal transduction mechanisms' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000014
information storage and processing
'information storage and processing' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/COA_0000058
background data set clustered by non-COG category
'background data set clustered by non-COG category' SubClassOf 'non-COG category clustered data set'
'background data set clustered by COG category' DisjointWith 'background data set clustered by non-COG category'
http://purl.obolibrary.org/obo/COA_0000015
cellular processes and signaling
'cellular processes and signaling' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/COA_0000012
Cell cycle control, cell division, chromosome partitioning
'Cell cycle control, cell division, chromosome partitioning' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000056
non-COG category clustered data set
'non-COG category clustered data set' SubClassOf http://purl.obolibrary.org/obo/OBI_0000648
http://purl.obolibrary.org/obo/BFO_0000019
quality
'quality' SubClassOf 'specifically dependent continuant'
http://purl.obolibrary.org/obo/COA_0000057
user defined protein list clustered by non-COG category
'user defined protein list clustered by non-COG category' SubClassOf 'non-COG category clustered data set'
'user defined protein list clustered by COG category' DisjointWith 'user defined protein list clustered by non-COG category'
http://purl.obolibrary.org/obo/COA_0000013
Nuclear structure
'Nuclear structure' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/BFO_0000020
specifically dependent continuant
'specifically dependent continuant' SubClassOf 'dependent continuant'
http://purl.obolibrary.org/obo/BFO_0000023
role
'role' SubClassOf 'realizable entity'
http://purl.obolibrary.org/obo/OBI_0000648
http://purl.obolibrary.org/obo/OBI_0000648 EquivalentTo http://purl.obolibrary.org/obo/OBI_0000312 some http://purl.obolibrary.org/obo/OBI_0200175
http://purl.obolibrary.org/obo/OBI_0000648 SubClassOf 'data set'
http://purl.obolibrary.org/obo/BFO_0000021
temporal instant
'temporal instant' SubClassOf 'connected temporal region'
http://purl.obolibrary.org/obo/BFO_0000022
connected temporal region
'connected temporal region' SubClassOf 'temporal region'
http://purl.obolibrary.org/obo/OBI_0100026
organism
'organism' SubClassOf 'material entity'
'organism' SubClassOf http://www.ifomis.org/bfo/1.1/snap#MaterialEntity
http://purl.obolibrary.org/obo/CAO_0000550
user defined protein list of COG B protein
user defined protein list clustered by COG category D
'user defined protein list of COG B protein' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list of COG B protein' SubClassOf 'is about' some 'COG category D clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000551
user defined protein list of COG D protein
'user defined protein list of COG D protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000310
COG category K clustered protein group, user defined
'COG category K clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category K protein')
'COG category K clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000311
COG category L clustered protein group, user defined
'COG category L clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category L protein')
'COG category L clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000553
user defined protein list clustered by COG category F
user defined protein list of COG F protein
'user defined protein list clustered by COG category F' SubClassOf 'is about' some 'COG category F clustered protein group, user defined'
'user defined protein list clustered by COG category F' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000312
COG category M clustered protein group, user defined
'COG category M clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category M protein')
'COG category M clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000313
COG category N clustered protein group, user defined
'COG category N clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category N protein')
'COG category N clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000555
user defined protein list of COG G protein
user defined protein list clustered by COG category G
'user defined protein list clustered by COG category G' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list clustered by COG category G' SubClassOf 'is about' some 'COG category G clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000314
COG category O clustered protein group, user defined
'COG category O clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category O clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category O protein')
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_1224
Proteobacteria
'Proteobacteria' SubClassOf 'organism'
http://purl.obolibrary.org/obo/CAO_0000315
COG category P clustered protein group, user defined
'COG category P clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category P protein')
'COG category P clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000557
user defined protein list clustered by COG category H
user defined protein list of COG H protein
'user defined protein list of COG H protein' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list of COG H protein' SubClassOf 'is about' some 'COG category H clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000316
COG category Q clustered protein group, user defined
'COG category Q clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category Q clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category Q protein')
http://purl.obolibrary.org/obo/CAO_0000317
COG category R clustered protein group, user defined
'COG category R clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category R protein')
'COG category R clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000559
user defined protein list clustered by COG category I
user defined protein list of COG I protein
'user defined protein list of COG I protein' SubClassOf 'is about' some 'COG category I clustered protein group, user defined'
'user defined protein list of COG I protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000318
COG category S clustered protein group, user defined
'COG category S clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category S clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category S protein')
http://purl.obolibrary.org/obo/CAO_0000319
COG category T clustered protein group, user defined
'COG category T clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category T protein')
'COG category T clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/IAO_0000010
software
'software' SubClassOf 'plan specification'
http://www.ifomis.org/bfo/1.1#Entity
entity
'entity' EquivalentTo 'continuant' or 'occurrent'
http://www.ifomis.org/bfo/1.1/snap#DependentContinuant
dependent_continuant
'dependent_continuant' DisjointWith 'spatial_region'
'dependent_continuant' SubClassOf 'continuant'
'dependent_continuant' DisjointWith 'independent_continuant'
'dependent_continuant' EquivalentTo 'generically_dependent_continuant' or 'specifically_dependent_continuant'
http://www.ifomis.org/bfo/1.1/snap#Role
role
'function' DisjointWith 'role'
'role' SubClassOf 'realizable_entity'
'disposition' DisjointWith 'role'
http://purl.obolibrary.org/obo/CAO_0000544
user defined protein list clustered by COG category A
'user defined protein list clustered by COG category A' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list clustered by COG category A' SubClassOf 'is about' some 'COG category A clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000546
user defined protein list clustered by COG category B
'user defined protein list clustered by COG category B' SubClassOf 'is about' some 'COG category B clustered protein group, user defined'
'user defined protein list clustered by COG category B' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000306
COG category G clustered protein group, user defined
'COG category G clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category G protein')
'COG category G clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000548
user defined protein list of COG C protein
user defined protein list clustered by COG category C
'user defined protein list clustered by COG category C' SubClassOf 'is about' some 'COG category C clustered protein group, user defined'
'user defined protein list clustered by COG category C' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000307
COG category H clustered protein group, user defined
'COG category H clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category H protein')
'COG category H clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000549
user defined protein list of COG A protein
'user defined protein list of COG A protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000308
COG category I clustered protein group, user defined
'COG category I clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category I protein')
'COG category I clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000309
COG category J clustered protein group, user defined
'COG category J clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category J protein')
'COG category J clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/OBI_0200173
background correction objective
'background correction objective' SubClassOf 'correction objective'
http://www.ifomis.org/bfo/1.1/snap#ObjectBoundary
object_boundary
'fiat_object_part' DisjointWith 'object_boundary'
'object_aggregate' DisjointWith 'object_boundary'
'object_boundary' SubClassOf 'independent_continuant'
'object' DisjointWith 'object_boundary'
'object_boundary' DisjointWith 'site'
'material_entity' DisjointWith 'object_boundary'
http://purl.obolibrary.org/obo/OBI_0200179
class prediction objective
'class prediction objective' SubClassOf 'data transformation objective'
http://purl.obolibrary.org/obo/OBI_0200178
class discovery objective
'class discovery objective' SubClassOf 'objective specification'
http://www.ifomis.org/bfo/1.1/snap#Continuant
continuant
'continuant' EquivalentTo 'dependent_continuant' or 'independent_continuant' or 'spatial_region'
'continuant' SubClassOf 'entity'
'continuant' DisjointWith 'occurrent'
http://www.ifomis.org/bfo/1.1/span#TemporalInstant
temporal_instant
'temporal_instant' SubClassOf 'connected_temporal_region'
'temporal_instant' DisjointWith 'temporal_interval'
http://www.ifomis.org/bfo/1.1/span#TemporalInterval
temporal_interval
'temporal_interval' SubClassOf 'connected_temporal_region'
'temporal_instant' DisjointWith 'temporal_interval'
http://purl.obolibrary.org/obo/CAO_0000571
user defined protein list of COG O protein
user defined protein list clustered by COG category O
'user defined protein list of COG O protein' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list of COG O protein' SubClassOf 'is about' some 'COG category O clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000573
user defined protein list of COG P protein
user defined protein list clustered by COG category P
'user defined protein list of COG P protein' SubClassOf 'is about' some 'COG category P clustered protein group, user defined'
'user defined protein list of COG P protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000575
user defined protein list clustered by COG category Q
user defined protein list of COG Q protein
'user defined protein list clustered by COG category Q' SubClassOf 'is about' some 'COG category Q clustered protein group, user defined'
'user defined protein list clustered by COG category Q' SubClassOf 'user defined protein list clustered by COG category'
http://www.ifomis.org/bfo/1.1/span#ProcessBoundary
process_boundary
'process_boundary' DisjointWith 'processual_context'
'process_boundary' SubClassOf 'processual_entity'
'fiat_process_part' DisjointWith 'process_boundary'
'process_aggregate' DisjointWith 'process_boundary'
'process' DisjointWith 'process_boundary'
http://purl.obolibrary.org/obo/CAO_0000577
user defined protein list of COG R protein
user defined protein list clustered by COG category R
'user defined protein list clustered by COG category R' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list clustered by COG category R' SubClassOf 'is about' some 'COG category R clustered protein group, user defined'
http://www.ifomis.org/bfo/1.1/snap#ThreeDimensionalRegion
three_dimensional_region
'three_dimensional_region' DisjointWith 'two_dimensional_region'
'one_dimensional_region' DisjointWith 'three_dimensional_region'
'three_dimensional_region' DisjointWith 'zero_dimensional_region'
'three_dimensional_region' SubClassOf 'spatial_region'
http://purl.obolibrary.org/obo/CAO_0000579
user defined protein list clustered by COG category S
user defined protein list of COG S protein
'user defined protein list clustered by COG category S' SubClassOf 'is about' some 'COG category S clustered protein group, user defined'
'user defined protein list clustered by COG category S' SubClassOf 'user defined protein list clustered by COG category'
http://www.ifomis.org/bfo/1.1/snap#FiatObjectPart
fiat_object_part
'fiat_object_part' DisjointWith 'site'
'fiat_object_part' DisjointWith 'object_boundary'
'fiat_object_part' SubClassOf 'material_entity'
'fiat_object_part' DisjointWith 'object'
'fiat_object_part' DisjointWith 'object_aggregate'
http://www.ifomis.org/bfo/1.1/snap#ZeroDimensionalRegion
zero_dimensional_region
'one_dimensional_region' DisjointWith 'zero_dimensional_region'
'zero_dimensional_region' SubClassOf 'spatial_region'
'three_dimensional_region' DisjointWith 'zero_dimensional_region'
'two_dimensional_region' DisjointWith 'zero_dimensional_region'
http://purl.obolibrary.org/obo/OBI_0200166
data transformation objective
'data transformation objective' SubClassOf 'objective specification'
http://purl.obolibrary.org/obo/OBI_0200168
correction objective
'correction objective' SubClassOf 'data transformation objective'
http://www.ifomis.org/bfo/1.1/span#Process
process
'fiat_process_part' DisjointWith 'process'
'process' SubClassOf 'processual_entity'
'process' DisjointWith 'processual_context'
'process' DisjointWith 'process_aggregate'
'process' DisjointWith 'process_boundary'
http://purl.obolibrary.org/obo/CAO_0000561
user defined protein list clustered by COG category J
user defined protein list of COG J protein
'user defined protein list of COG J protein' SubClassOf 'is about' some 'COG category J clustered protein group, user defined'
'user defined protein list of COG J protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000320
COG category U clustered protein group, user defined
'COG category U clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category U protein')
'COG category U clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000321
COG category V clustered protein group, user defined
'COG category V clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category V clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category V protein')
http://purl.obolibrary.org/obo/CAO_0000563
user defined protein list clustered by COG category K
user defined protein list of COG K protein
'user defined protein list of COG K protein' SubClassOf 'is about' some 'COG category K clustered protein group, user defined'
'user defined protein list of COG K protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000322
COG category W clustered protein group, user defined
'COG category W clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category W clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category W protein')
http://purl.obolibrary.org/obo/CAO_0000323
COG category Y clustered protein group, user defined
'COG category Y clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category Y clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category Y protein')
http://purl.obolibrary.org/obo/CAO_0000565
user defined protein list of COG L protein
user defined protein list clustered by COG category L
'user defined protein list of COG L protein' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list of COG L protein' SubClassOf 'is about' some 'COG category L clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000324
COG category Z clustered protein group, user defined
'COG category Z clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category Z clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category Z protein')
http://purl.obolibrary.org/obo/CAO_0000567
user defined protein list of COG M protein
user defined protein list clustered by COG category M
'user defined protein list of COG M protein' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list of COG M protein' SubClassOf 'is about' some 'COG category M clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000569
user defined protein list of COG N protein
user defined protein list clustered by COG category N
'user defined protein list clustered by COG category N' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list clustered by COG category N' SubClassOf 'is about' some 'COG category N clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000591
user defined protein list clustered by COG category Z
user defined protein list of COG Z protein
'user defined protein list of COG Z protein' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list of COG Z protein' SubClassOf 'is about' some 'COG category Z clustered protein group, user defined'
http://www.ifomis.org/bfo/1.1/span#ConnectedTemporalRegion
connected_temporal_region
'connected_temporal_region' SubClassOf 'temporal_region'
'connected_temporal_region' DisjointWith 'scattered_temporal_region'
'connected_temporal_region' EquivalentTo 'temporal_instant' or 'temporal_interval'
http://purl.obolibrary.org/obo/CAO_0000116
COG category C protein
'COG category C protein' SubClassOf 'is_member_of' some 'COG category C clustered protein group, user defined'
'COG category C protein' SubClassOf 'COG category protein'
'COG category C protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG C: Energy production and conversion')
http://www.ifomis.org/bfo/1.1/snap#Quality
quality
'quality' SubClassOf 'specifically_dependent_continuant'
'quality' DisjointWith 'realizable_entity'
http://www.ifomis.org/bfo/1.1/span#ProcessualEntity
processual_entity
'processual_entity' EquivalentTo 'fiat_process_part' or 'process' or 'process_aggregate' or 'process_boundary' or 'processual_context'
'processual_entity' DisjointWith 'spatiotemporal_region'
'processual_entity' DisjointWith 'temporal_region'
'processual_entity' SubClassOf 'occurrent'
http://www.ifomis.org/bfo/1.1/snap#SpecificallyDependentContinuant
specifically_dependent_continuant
'specifically_dependent_continuant' SubClassOf 'dependent_continuant'
'generically_dependent_continuant' DisjointWith 'specifically_dependent_continuant'
'specifically_dependent_continuant' EquivalentTo 'quality' or 'realizable_entity'
http://purl.obolibrary.org/obo/OBI_0000011
planned process
'planned process' EquivalentTo 'realizes' some ('is_concretization_of' some
('plan specification' and ('has_part' some 'objective specification')))
'planned process' SubClassOf 'process'
http://www.ifomis.org/bfo/1.1/span#ProcessAggregate
process_aggregate
'process_aggregate' DisjointWith 'processual_context'
'process_aggregate' SubClassOf 'processual_entity'
'process' DisjointWith 'process_aggregate'
'process_aggregate' DisjointWith 'process_boundary'
'fiat_process_part' DisjointWith 'process_aggregate'
http://www.ifomis.org/bfo/1.1/span#SpatiotemporalRegion
spatiotemporal_region
'processual_entity' DisjointWith 'spatiotemporal_region'
'spatiotemporal_region' SubClassOf 'occurrent'
'spatiotemporal_region' EquivalentTo 'connected_spatiotemporal_region' or 'scattered_spatiotemporal_region'
'spatiotemporal_region' DisjointWith 'temporal_region'
http://www.ifomis.org/bfo/1.1/snap#OneDimensionalRegion
one_dimensional_region
'one_dimensional_region' DisjointWith 'two_dimensional_region'
'one_dimensional_region' DisjointWith 'three_dimensional_region'
'one_dimensional_region' DisjointWith 'zero_dimensional_region'
'one_dimensional_region' SubClassOf 'spatial_region'
http://purl.obolibrary.org/obo/CAO_0000581
user defined protein list of COG T protein
user defined protein list clustered by COG category T
'user defined protein list clustered by COG category T' SubClassOf 'is about' some 'COG category T clustered protein group, user defined'
'user defined protein list clustered by COG category T' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000583
user defined protein list of COG U protein
user defined protein list clustered by COG category U
'user defined protein list clustered by COG category U' SubClassOf 'is about' some 'COG category U clustered protein group, user defined'
'user defined protein list clustered by COG category U' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000585
user defined protein list clustered by COG category V
user defined protein list of COG V protein
'user defined protein list of COG V protein' SubClassOf 'is about' some 'COG category V clustered protein group, user defined'
'user defined protein list of COG V protein' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000587
user defined protein list clustered by COG category W
user defined protein list of COG W protein
'user defined protein list clustered by COG category W' SubClassOf 'user defined protein list clustered by COG category'
'user defined protein list clustered by COG category W' SubClassOf 'is about' some 'COG category W clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000226
COG category D clustered protein group, user defined
'COG category D clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category D protein')
'COG category D clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000589
user defined protein list of COG Y protein
user defined protein list clustered by COG category Y
'user defined protein list of COG Y protein' SubClassOf 'is about' some 'COG category Y clustered protein group, user defined'
'user defined protein list of COG Y protein' SubClassOf 'user defined protein list clustered by COG category'
http://www.ifomis.org/bfo/1.1/span#ScatteredSpatiotemporalRegion
scattered_spatiotemporal_region
'scattered_spatiotemporal_region' SubClassOf 'spatiotemporal_region'
'connected_spatiotemporal_region' DisjointWith 'scattered_spatiotemporal_region'
http://purl.obolibrary.org/obo/CAO_0000229
COG category F clustered protein group, user defined
'COG category F clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category F protein')
'COG category F clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://www.ifomis.org/bfo/1.1/span#SpatiotemporalInterval
spatiotemporal_interval
'spatiotemporal_instant' DisjointWith 'spatiotemporal_interval'
'spatiotemporal_interval' SubClassOf 'connected_spatiotemporal_region'
http://www.ifomis.org/bfo/1.1/span#ConnectedSpatiotemporalRegion
connected_spatiotemporal_region
'connected_spatiotemporal_region' EquivalentTo 'spatiotemporal_instant' or 'spatiotemporal_interval'
'connected_spatiotemporal_region' DisjointWith 'scattered_spatiotemporal_region'
'connected_spatiotemporal_region' SubClassOf 'spatiotemporal_region'
http://www.ifomis.org/bfo/1.1/span#ScatteredTemporalRegion
scattered_temporal_region
'connected_temporal_region' DisjointWith 'scattered_temporal_region'
'scattered_temporal_region' SubClassOf 'temporal_region'
http://purl.obolibrary.org/obo/CAO_0000010
COG L: Replication, recombination and repair
'COG L: Replication, recombination and repair' SubClassOf 'COG information storage and processing'
http://purl.obolibrary.org/obo/CAO_0000011
COG B: Chromatin structure and dynamics
'COG B: Chromatin structure and dynamics' SubClassOf 'COG information storage and processing'
http://purl.obolibrary.org/obo/CAO_0000012
COG D: Cell cycle control, cell division, chromosome partitioning
'COG D: Cell cycle control, cell division, chromosome partitioning' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000013
COG Y: Nuclear structure
'COG Y: Nuclear structure' SubClassOf 'COG cellular processes and signaling'
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_29459
Brucella melitensis
'Brucella melitensis' SubClassOf 'Brucella'
http://purl.obolibrary.org/obo/CAO_0000014
COG information storage and processing
'COG information storage and processing' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/CAO_0000015
COG cellular processes and signaling
'COG cellular processes and signaling' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/CAO_0000016
COG V: Defense mechanisms
'COG V: Defense mechanisms' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000017
COG T: Signal transduction mechanisms
'COG T: Signal transduction mechanisms' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000018
COG M: Cell wall/membrane/envelope biogenesis
'COG M: Cell wall/membrane/envelope biogenesis' SubClassOf 'COG cellular processes and signaling'
http://www.ifomis.org/bfo/1.1/snap#IndependentContinuant
independent_continuant
'independent_continuant' SubClassOf 'continuant'
'independent_continuant' EquivalentTo 'material_entity' or 'object_boundary' or 'site'
'dependent_continuant' DisjointWith 'independent_continuant'
'independent_continuant' DisjointWith 'spatial_region'
http://purl.obolibrary.org/obo/CAO_0000019
COG N: Cell motility
'COG N: Cell motility' SubClassOf 'COG cellular processes and signaling'
http://www.ifomis.org/bfo/1.1/span#ProcessualContext
processual_context
'process_aggregate' DisjointWith 'processual_context'
'process_boundary' DisjointWith 'processual_context'
'process' DisjointWith 'processual_context'
'processual_context' SubClassOf 'processual_entity'
'fiat_process_part' DisjointWith 'processual_context'
http://purl.obolibrary.org/obo/CAO_0000001
OntoCOG
'OntoCOG' SubClassOf 'software'
'OntoCOG' SubClassOf 'has_part' some 'COG enrichment analysis data transformation objective'
http://purl.obolibrary.org/obo/CAO_0000002
COG category clustered data set
'COG category clustered data set' SubClassOf 'is_specified_input_of' some 'COG enrichment data transformation using Fisher's exact test'
'COG category clustered data set' SubClassOf 'clustered data set'
http://purl.obolibrary.org/obo/CAO_0000003
protein database identifier
'protein database identifier' SubClassOf 'symbol'
'protein database identifier' SubClassOf 'is about' some 'protein'
http://purl.obolibrary.org/obo/CAO_0000004
gene database indentifier
'gene database indentifier' SubClassOf 'symbol'
'gene database indentifier' SubClassOf 'is about' some 'gene'
http://purl.obolibrary.org/obo/CAO_0000005
COG annotation
'COG annotation' SubClassOf 'information content entity'
'COG annotation' SubClassOf 'is about' some 'protein'
http://purl.obolibrary.org/obo/CAO_0000006
COG Functional category
'COG Functional category' SubClassOf 'is about' some 'COG category protein'
'COG Functional category' SubClassOf 'is about' some 'COG category clustered data set'
'COG Functional category' SubClassOf 'COG annotation'
http://purl.obolibrary.org/obo/CAO_0000007
COG J: Translation, ribosomal structure and biogenesis
'COG J: Translation, ribosomal structure and biogenesis' SubClassOf 'COG information storage and processing'
http://purl.obolibrary.org/obo/CAO_0000008
COG A: RNA processing and modification
'COG A: RNA processing and modification' SubClassOf 'COG information storage and processing'
http://purl.obolibrary.org/obo/CAO_0000009
COG K: Transcription
'COG K: Transcription' SubClassOf 'COG information storage and processing'
http://www.ifomis.org/bfo/1.1/span#FiatProcessPart
fiat_process_part
'fiat_process_part' DisjointWith 'process'
'fiat_process_part' SubClassOf 'processual_entity'
'fiat_process_part' DisjointWith 'process_boundary'
'fiat_process_part' DisjointWith 'process_aggregate'
'fiat_process_part' DisjointWith 'processual_context'
http://purl.obolibrary.org/obo/CAO_0000030
COG I: Lipid transport and metabolism
'COG I: Lipid transport and metabolism' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000151
COG category F protein
'COG category F protein' SubClassOf 'COG category protein'
'COG category F protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG F: Nucleotide transport and metabolism')
'COG category F protein' SubClassOf 'is_member_of' some 'COG category F clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000031
COG P: Inorganic ion transport and metabolism
'COG P: Inorganic ion transport and metabolism' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000032
COG Q: Secondary metabolites biosynthesis, transport and catabolism
'COG Q: Secondary metabolites biosynthesis, transport and catabolism' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000153
COG category E protein
'COG category E protein' SubClassOf 'is_member_of' some 'COG category E clustered protein group, user defined'
'COG category E protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG E: Amino acid transport and metabolism')
'COG category E protein' SubClassOf 'COG category protein'
http://purl.obolibrary.org/obo/CAO_0000033
COG poorly characterized
'COG poorly characterized' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/CAO_0000154
COG category G protein
'COG category G protein' SubClassOf 'COG category protein'
'COG category G protein' SubClassOf 'is_member_of' some 'COG category G clustered protein group, user defined'
'COG category G protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG G: Carbohydrate transport and metabolism')
http://purl.obolibrary.org/obo/CAO_0000034
COG R: General function prediction only
'COG R: General function prediction only' SubClassOf 'COG poorly characterized'
http://purl.obolibrary.org/obo/CAO_0000155
COG category H protein
'COG category H protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG H: Coenzyme transport and metabolism')
'COG category H protein' SubClassOf 'COG category protein'
'COG category H protein' SubClassOf 'is_member_of' some 'COG category H clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000035
COG S: Function unknown
'COG S: Function unknown' SubClassOf 'COG poorly characterized'
http://purl.obolibrary.org/obo/CAO_0000156
COG category I protein
'COG category I protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG I: Lipid transport and metabolism')
'COG category I protein' SubClassOf 'COG category protein'
'COG category I protein' SubClassOf 'is_member_of' some 'COG category I clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000036
COG enrichment analysis data transformation objective
'COG enrichment analysis data transformation objective' SubClassOf 'data transformation objective'
http://purl.obolibrary.org/obo/CAO_0000157
COG category J protein
'COG category J protein' SubClassOf 'COG category protein'
'COG category J protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG J: Translation, ribosomal structure and biogenesis')
'COG category J protein' SubClassOf 'is_member_of' some 'COG category J clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000037
genetic material
'genetic material' SubClassOf 'molecular entity'
http://purl.obolibrary.org/obo/CAO_0000158
COG category K protein
'COG category K protein' SubClassOf 'is_member_of' some 'COG category K clustered protein group, user defined'
'COG category K protein' SubClassOf 'COG category protein'
'COG category K protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG K: Transcription')
http://purl.obolibrary.org/obo/CAO_0000038
gene
'gene' SubClassOf 'genetic material'
http://purl.obolibrary.org/obo/CAO_0000159
COG category L protein
'COG category L protein' SubClassOf 'is_member_of' some 'COG category L clustered protein group, user defined'
'COG category L protein' SubClassOf 'COG category protein'
'COG category L protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG L: Replication, recombination and repair')
http://purl.obolibrary.org/obo/CAO_0000039
COG enrichment data transformation using Fisher's exact test
'COG enrichment data transformation using Fisher's exact test' SubClassOf 'has_part' some 'Fisher's exact test for COG enrichment data transformation'
'COG enrichment data transformation using Fisher's exact test' SubClassOf 'has specified input' some 'user defined data set for COG enrichment analysis'
'COG enrichment data transformation using Fisher's exact test' SubClassOf 'has_specified_output' some 'COG enrichment Fisher's test p-value'
'COG enrichment data transformation using Fisher's exact test' SubClassOf 'COG enrichment data transformation'
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_234
Brucella
'Brucella' SubClassOf 'Proteobacteria'
http://www.ifomis.org/bfo/1.1/snap#RealizableEntity
realizable_entity
'realizable_entity' SubClassOf 'specifically_dependent_continuant'
'quality' DisjointWith 'realizable_entity'
http://www.ifomis.org/bfo/1.1/snap#Site
site
'fiat_object_part' DisjointWith 'site'
'object' DisjointWith 'site'
'object_aggregate' DisjointWith 'site'
'object_boundary' DisjointWith 'site'
'site' SubClassOf 'independent_continuant'
'material_entity' DisjointWith 'site'
http://purl.obolibrary.org/obo/CAO_0000160
COG category M protein
'COG category M protein' SubClassOf 'is_member_of' some 'COG category M clustered protein group, user defined'
'COG category M protein' SubClassOf 'COG category protein'
'COG category M protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG M: Cell wall/membrane/envelope biogenesis')
http://purl.obolibrary.org/obo/CAO_0000040
COG enrichment Fisher's test p-value
'COG enrichment Fisher's test p-value' SubClassOf 'is_specified_output_of' some 'Fisher's exact test for COG enrichment data transformation'
'COG enrichment Fisher's test p-value' SubClassOf 'is about' some 'user defined protein list clustered by COG category'
'COG enrichment Fisher's test p-value' SubClassOf 'data item'
http://purl.obolibrary.org/obo/CAO_0000161
COG category N protein
'COG category N protein' SubClassOf 'COG category protein'
'COG category N protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG N: Cell motility')
'COG category N protein' SubClassOf 'is_member_of' some 'COG category N clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000020
COG Z: Cytoskeleton
'COG Z: Cytoskeleton' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000021
COG W: Extracellular structures
'COG W: Extracellular structures' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000022
COG U: Intracellular trafficking, secretion, and vesicular transport
'COG U: Intracellular trafficking, secretion, and vesicular transport' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000023
COG O: Posttranslational modification, protein turnover, chaperones
'COG O: Posttranslational modification, protein turnover, chaperones' SubClassOf 'COG cellular processes and signaling'
http://purl.obolibrary.org/obo/CAO_0000024
COG metabolism
'COG metabolism' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/CAO_0000025
COG C: Energy production and conversion
'COG C: Energy production and conversion' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000026
COG G: Carbohydrate transport and metabolism
'COG G: Carbohydrate transport and metabolism' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000147
COG category D protein
'COG category D protein' SubClassOf 'COG category protein'
'COG category D protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG D: Cell cycle control, cell division, chromosome partitioning')
'COG category D protein' SubClassOf 'is_member_of' some 'COG category D clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000027
COG E: Amino acid transport and metabolism
'COG E: Amino acid transport and metabolism' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000028
COG F: Nucleotide transport and metabolism
'COG F: Nucleotide transport and metabolism' SubClassOf 'COG metabolism'
http://purl.obolibrary.org/obo/CAO_0000029
COG H: Coenzyme transport and metabolism
'COG H: Coenzyme transport and metabolism' SubClassOf 'COG metabolism'
http://www.ifomis.org/bfo/1.1/snap#Disposition
disposition
'disposition' DisjointWith 'function'
'disposition' DisjointWith 'role'
'disposition' SubClassOf 'realizable_entity'
http://www.ifomis.org/bfo/1.1/span#SpatiotemporalInstant
spatiotemporal_instant
'spatiotemporal_instant' DisjointWith 'spatiotemporal_interval'
'spatiotemporal_instant' SubClassOf 'connected_spatiotemporal_region'
http://purl.obolibrary.org/obo/CAO_0000053
COG category B protein
'COG category B protein' SubClassOf 'is_member_of' some 'COG category B clustered protein group, user defined'
'COG category B protein' SubClassOf 'COG category protein'
'COG category B protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG B: Chromatin structure and dynamics')
http://purl.obolibrary.org/obo/CAO_0000054
background data set clustered by COG category
'background data set clustered by COG category' SubClassOf 'COG category clustered data set'
http://purl.obolibrary.org/obo/CAO_0000055
COG category protein
'COG category protein' SubClassOf 'protein'
'COG category protein' SubClassOf 'is_member_of' some 'COG category Y clustered protein group, user defined'
'COG category protein' SubClassOf 'denoted_by' some 'COG Functional category'
http://purl.obolibrary.org/obo/CAO_0000056
user defined protein list clustered by COG category E
user defined protein list of COG E protein
'user defined protein list clustered by COG category E' SubClassOf 'is about' some 'COG category E clustered protein group, user defined'
'user defined protein list clustered by COG category E' SubClassOf 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/CAO_0000057
COG enrichment data transformation
'COG enrichment data transformation' SubClassOf 'data transformation'
http://purl.obolibrary.org/obo/CAO_0000178
COG category C clustered protein group, user defined
'COG category C clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category C protein')
'COG category C clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000058
COG category E clustered protein group, user defined
'COG category E clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category E protein')
'COG category E clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://www.ifomis.org/bfo/1.1/snap#GenericallyDependentContinuant
generically_dependent_continuant
'generically_dependent_continuant' DisjointWith 'specifically_dependent_continuant'
'generically_dependent_continuant' SubClassOf 'dependent_continuant'
http://purl.obolibrary.org/obo/OBI_0200200
chi square test
'chi square test' SubClassOf 'achieves_planned_objective' some 'statistical hypothesis test objective'
'chi square test' SubClassOf 'statistical hypothesis test'
http://purl.obolibrary.org/obo/CAO_0000060
NCBI Gene GI
'NCBI Gene GI' SubClassOf 'gene database indentifier'
http://purl.obolibrary.org/obo/CAO_0000061
NCBI Protein GI
'NCBI Protein GI' SubClassOf 'protein database identifier'
http://purl.obolibrary.org/obo/CAO_0000062
NCBI Protein Accession
'NCBI Protein Accession' SubClassOf 'protein database identifier'
http://purl.obolibrary.org/obo/CAO_0000041
Fisher's exact test for COG enrichment data transformation
'Fisher's exact test for COG enrichment data transformation' SubClassOf 'Fisher's exact test'
http://purl.obolibrary.org/obo/CAO_0000162
COG category O protein
'COG category O protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG O: Posttranslational modification, protein turnover, chaperones')
'COG category O protein' SubClassOf 'COG category protein'
'COG category O protein' SubClassOf 'is_member_of' some 'COG category O clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000163
COG category P protein
'COG category P protein' SubClassOf 'COG category protein'
'COG category P protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG P: Inorganic ion transport and metabolism')
'COG category P protein' SubClassOf 'is_member_of' some 'COG category P clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000043
user defined data set for COG enrichment analysis
'user defined data set for COG enrichment analysis' SubClassOf 'classified data set'
'user defined data set for COG enrichment analysis' SubClassOf 'is_specified_input_of' some 'COG enrichment data transformation using Fisher's exact test'
http://purl.obolibrary.org/obo/CAO_0000164
COG category Q protein
'COG category Q protein' SubClassOf 'COG category protein'
'COG category Q protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG Q: Secondary metabolites biosynthesis, transport and catabolism')
'COG category Q protein' SubClassOf 'is_member_of' some 'COG category Q clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000044
user defined gene list
'user defined gene list' SubClassOf 'user defined data set for COG enrichment analysis'
http://purl.obolibrary.org/obo/CAO_0000165
COG category R protein
'COG category R protein' SubClassOf 'is_member_of' some 'COG category R clustered protein group, user defined'
'COG category R protein' SubClassOf 'COG category protein'
'COG category R protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG R: General function prediction only')
http://purl.obolibrary.org/obo/CAO_0000045
user defined COG annotated protein list
'user defined COG annotated protein list' SubClassOf 'user defined data set for COG enrichment analysis'
'user defined COG annotated protein list' SubClassOf 'is_specified_input_of' some 'COG enrichment data transformation using Fisher's exact test'
http://purl.obolibrary.org/obo/CAO_0000166
COG category S protein
'COG category S protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG S: Function unknown')
'COG category S protein' SubClassOf 'is_member_of' some 'COG category S clustered protein group, user defined'
'COG category S protein' SubClassOf 'COG category protein'
http://purl.obolibrary.org/obo/CAO_0000046
COG category A protein
'COG category A protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG A: RNA processing and modification')
'COG category A protein' SubClassOf 'COG category protein'
'COG category A protein' SubClassOf 'is_member_of' some 'COG category A clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000167
COG category T protein
'COG category T protein' SubClassOf 'is_member_of' some 'COG category T clustered protein group, user defined'
'COG category T protein' SubClassOf 'COG category protein'
'COG category T protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG T: Signal transduction mechanisms')
http://purl.obolibrary.org/obo/CAO_0000047
COG enrichment data transformation using Chi suare test
'COG enrichment data transformation using Chi suare test' SubClassOf 'COG enrichment data transformation'
http://purl.obolibrary.org/obo/CAO_0000168
COG category U protein
'COG category U protein' SubClassOf 'is_member_of' some 'COG category U clustered protein group, user defined'
'COG category U protein' SubClassOf 'COG category protein'
'COG category U protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG U: Intracellular trafficking, secretion, and vesicular transport')
http://purl.obolibrary.org/obo/CAO_0000048
protein group, user defined
'protein group, user defined' SubClassOf 'denoted_by' some 'COG enrichment Fisher's test p-value'
'protein group, user defined' SubClassOf 'object_aggregate'
'protein group, user defined' SubClassOf 'has size' some http://www.w3.org/2001/XMLSchema#int
'protein group, user defined' SubClassOf 'has_member' some 'protein'
http://purl.obolibrary.org/obo/CAO_0000169
COG category V protein
'COG category V protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG V: Defense mechanisms')
'COG category V protein' SubClassOf 'is_member_of' some 'COG category V clustered protein group, user defined'
'COG category V protein' SubClassOf 'COG category protein'
http://purl.obolibrary.org/obo/CAO_0000049
COG mapping data transformation
'COG mapping data transformation' SubClassOf 'has specified input' some 'user defined data set for COG enrichment analysis'
'COG mapping data transformation' SubClassOf 'has_specified_output' some 'user defined protein list clustered by COG category'
'COG mapping data transformation' SubClassOf 'class discovery data transformation'
http://purl.obolibrary.org/obo/CAO_0000170
COG category W protein
'COG category W protein' SubClassOf 'COG category protein'
'COG category W protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG W: Extracellular structures')
'COG category W protein' SubClassOf 'is_member_of' some 'COG category W clustered protein group, user defined'
http://purl.obolibrary.org/obo/CAO_0000050
user defined protein list clustered by COG category
'user defined protein list clustered by COG category' SubClassOf 'COG category clustered data set'
'user defined protein list clustered by COG category' SubClassOf 'is about' some 'COG category protein'
http://purl.obolibrary.org/obo/CAO_0000171
COG category Y protein
'COG category Y protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG Y: Nuclear structure')
'COG category Y protein' SubClassOf 'COG category protein'
http://purl.obolibrary.org/obo/CAO_0000172
COG category Z protein
'COG category Z protein' SubClassOf 'is_member_of' some 'COG category Z clustered protein group, user defined'
'COG category Z protein' SubClassOf 'COG category protein'
'COG category Z protein' EquivalentTo 'COG category protein' and ('denoted_by' min 1 'COG Z: Cytoskeleton')
http://purl.obolibrary.org/obo/CAO_0000074
COG category A clustered protein group, user defined
'COG category A clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category A protein')
'COG category A clustered protein group, user defined' SubClassOf 'protein group, user defined'
http://www.ifomis.org/bfo/1.1/snap#Function
function
'function' SubClassOf 'realizable_entity'
'disposition' DisjointWith 'function'
'function' DisjointWith 'role'
http://www.ifomis.org/bfo/1.1/snap#MaterialEntity
material_entity
'material_entity' EquivalentTo 'fiat_object_part' or 'object' or 'object_aggregate'
'material_entity' SubClassOf 'independent_continuant'
'material_entity' DisjointWith 'object_boundary'
'material_entity' DisjointWith 'site'
http://www.ifomis.org/bfo/1.1/snap#TwoDimensionalRegion
two_dimensional_region
'two_dimensional_region' SubClassOf 'spatial_region'
'three_dimensional_region' DisjointWith 'two_dimensional_region'
'one_dimensional_region' DisjointWith 'two_dimensional_region'
'two_dimensional_region' DisjointWith 'zero_dimensional_region'
http://purl.obolibrary.org/obo/CAO_0000084
COG category B clustered protein group, user defined
'COG category B clustered protein group, user defined' SubClassOf 'protein group, user defined'
'COG category B clustered protein group, user defined' EquivalentTo 'protein group, user defined' and ('has_member' only 'COG category B protein')
http://purl.obolibrary.org/obo/CAO_0000063
Text::NSP::Measures::2D::Fisher::twotailed
'Text::NSP::Measures::2D::Fisher::twotailed' SubClassOf 'algorithm'
http://www.ifomis.org/bfo/1.1/snap#SpatialRegion
spatial_region
'dependent_continuant' DisjointWith 'spatial_region'
'spatial_region' EquivalentTo 'one_dimensional_region' or 'three_dimensional_region' or 'two_dimensional_region' or 'zero_dimensional_region'
'spatial_region' SubClassOf 'continuant'
'independent_continuant' DisjointWith 'spatial_region'
http://purl.obolibrary.org/obo/OBI_0000666
background correction data transformation
'background correction data transformation' SubClassOf 'data transformation'
'background correction data transformation' EquivalentTo ('has_specified_output' some 'background corrected data set') or ('achieves_planned_objective' some 'background correction objective')
http://purl.obolibrary.org/obo/OBI_0000663
class prediction data transformation
'class prediction data transformation' SubClassOf 'data transformation'
'class prediction data transformation' EquivalentTo ('has_specified_output' some 'classified data set') or ('achieves_planned_objective' some 'class prediction objective')
http://purl.obolibrary.org/obo/OBI_0000660
background corrected data set
'background corrected data set' EquivalentTo 'is_specified_output_of' some 'background correction data transformation'
'background corrected data set' SubClassOf 'data set'
http://www.ifomis.org/bfo/1.1/snap#Object
object
'fiat_object_part' DisjointWith 'object'
'object' SubClassOf 'material_entity'
'object' DisjointWith 'site'
'object' DisjointWith 'object_aggregate'
'object' DisjointWith 'object_boundary'
http://www.ifomis.org/bfo/1.1/snap#ObjectAggregate
object_aggregate
'object_aggregate' DisjointWith 'object_boundary'
'object_aggregate' SubClassOf 'material_entity'
'object' DisjointWith 'object_aggregate'
'object_aggregate' DisjointWith 'site'
'fiat_object_part' DisjointWith 'object_aggregate'
http://purl.obolibrary.org/obo/OBI_0000675
statistical hypothesis test objective
'statistical hypothesis test objective' SubClassOf 'data transformation objective'
http://purl.obolibrary.org/obo/OBI_0000673
statistical hypothesis test
'statistical hypothesis test' EquivalentTo 'achieves_planned_objective' some 'statistical hypothesis test objective'
'statistical hypothesis test' SubClassOf 'data transformation'
http://www.ifomis.org/bfo/1.1/span#Occurrent
occurrent
'occurrent' SubClassOf 'entity'
'occurrent' EquivalentTo 'processual_entity' or 'spatiotemporal_region' or 'temporal_region'
'continuant' DisjointWith 'occurrent'
http://www.ifomis.org/bfo/1.1/span#TemporalRegion
temporal_region
'temporal_region' EquivalentTo 'connected_temporal_region' or 'scattered_temporal_region'
'temporal_region' SubClassOf 'occurrent'
'processual_entity' DisjointWith 'temporal_region'
'spatiotemporal_region' DisjointWith 'temporal_region'
http://purl.obolibrary.org/obo/COA_0000043
user defined data set for COG enrichment analysis
'user defined data set for COG enrichment analysis' SubClassOf 'is_specified_input_of' some 'COG enrichment data transformation'
'user defined data set for COG enrichment analysis' EquivalentTo http://purl.obolibrary.org/obo/OBI_0000023 and ('has part' some
('user defined protein list clustered by COG category' or 'user defined protein list clustered by non-COG category')) and ('has part' only
('user defined protein list clustered by COG category' or 'user defined protein list clustered by non-COG category'))
http://purl.obolibrary.org/obo/COA_0000044
user defined gene list with COG annotation
'user defined gene list with COG annotation' SubClassOf 'user defined data set for COG enrichment analysis'
http://purl.obolibrary.org/obo/COA_0000041
Fisher's exact test for COG enrichment data transforamtion
'Fisher's exact test for COG enrichment data transforamtion' SubClassOf 'is part of' some 'COG enrichment data transformation'
'Fisher's exact test for COG enrichment data transforamtion' SubClassOf http://purl.obolibrary.org/obo/OBI_0200176
http://purl.obolibrary.org/obo/COA_0000040
COG enrichment score of Fisher test
'COG enrichment score of Fisher test' SubClassOf 'data item'
'COG enrichment score of Fisher test' SubClassOf 'p value of COG enrichment score' some http://www.w3.org/2001/XMLSchema#float
'COG enrichment score of Fisher test' SubClassOf http://purl.obolibrary.org/obo/OBI_0000312 some 'Fisher's exact test for COG enrichment data transforamtion'
'COG enrichment score of Fisher test' SubClassOf 'is about' some 'user defined protein list clustered by COG category'
http://purl.obolibrary.org/obo/BFO_0000005
dependent continuant
'dependent continuant' SubClassOf 'continuant'
http://purl.obolibrary.org/obo/COA_0000007
Translation, ribosomal structure and biogenesis
'Translation, ribosomal structure and biogenesis' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000008
RNA processing and modification
'RNA processing and modification' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000005
COG annotation
'COG annotation' SubClassOf 'information content entity'
'COG annotation' SubClassOf 'is about' some 'protein'
http://purl.obolibrary.org/obo/COA_0000049
COG mapping data transformation
'COG mapping data transformation' SubClassOf 'is part of' some 'COG enrichment data transformation'
'COG mapping data transformation' SubClassOf 'has specified input' some 'user defined data set for COG enrichment analysis'
'COG mapping data transformation' SubClassOf 'has_specified_output' some 'user defined protein list clustered by COG category'
'COG mapping data transformation' SubClassOf http://purl.obolibrary.org/obo/OBI_0200175
http://purl.obolibrary.org/obo/BFO_0000003
occurrent
'occurrent' SubClassOf 'entity'
http://purl.obolibrary.org/obo/BFO_0000004
independent continuant
'independent continuant' SubClassOf 'continuant'
http://purl.obolibrary.org/obo/COA_0000006
COG Functional category
'COG Functional category' SubClassOf 'is about' some 'COG annotation'
'COG Functional category' SubClassOf 'is about' some 'COG category clustered data set'
'COG Functional category' SubClassOf 'information content entity'
'COG Functional category' SubClassOf 'is about' some 'protein'
http://purl.obolibrary.org/obo/COA_0000003
protein database identifier
'protein database identifier' SubClassOf 'symbol'
http://purl.obolibrary.org/obo/COA_0000048
protein congregate
'protein congregate' SubClassOf 'independent continuant'
'protein congregate' SubClassOf 'has_member' some 'protein'
http://purl.obolibrary.org/obo/COA_0000004
gene database indentifier
'gene database indentifier' SubClassOf 'symbol'
http://purl.obolibrary.org/obo/COA_0000045
user defined protein list with COG annotation
'user defined protein list with COG annotation' SubClassOf 'is about' some 'user defined protein congregate'
'user defined protein list with COG annotation' SubClassOf 'user defined data set for COG enrichment analysis'
http://purl.obolibrary.org/obo/BFO_0000007
process
'process' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/COA_0000002
COG category clustered data set
'COG category clustered data set' SubClassOf http://purl.obolibrary.org/obo/OBI_0000648
http://purl.obolibrary.org/obo/COA_0000046
COG enrichment analyzed data set
'COG enrichment analyzed data set' SubClassOf 'data set'
http://purl.obolibrary.org/obo/BFO_0000008
temporal region
'temporal region' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/COA_0000009
Transcription
'Transcription' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000032
Secondary metabolites biosynthesis, transport and catabolism
'Secondary metabolites biosynthesis, transport and catabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000033
poorly characterized
'poorly characterized' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/COA_0000030
Lipid transport and metabolism
'Lipid transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000031
Inorganic ion transport and metabolism
'Inorganic ion transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/BFO_0000038
temporal interval
'temporal interval' SubClassOf 'connected temporal region'
http://purl.obolibrary.org/obo/COA_0000038
gene
'gene' SubClassOf 'genetic material'
http://purl.obolibrary.org/obo/COA_0000039
COG enrichment data transformation
'COG enrichment data transformation' SubClassOf 'has specified input' some 'user defined data set for COG enrichment analysis'
'COG enrichment data transformation' SubClassOf 'has_specified_output' some 'COG enrichment analyzed data set'
'COG enrichment data transformation' SubClassOf http://purl.obolibrary.org/obo/OBI_0200000
'COG enrichment data transformation' SubClassOf 'has part' some 'Fisher's exact test for COG enrichment data transforamtion'
http://purl.obolibrary.org/obo/COA_0000037
genetic material
'genetic material' SubClassOf 'molecular entity'
http://purl.obolibrary.org/obo/COA_0000034
General function prediction only
'General function prediction only' SubClassOf 'poorly characterized'
http://purl.obolibrary.org/obo/COA_0000035
Function unknown
'Function unknown' SubClassOf 'poorly characterized'
http://purl.obolibrary.org/obo/BFO_0000040
material entity
'material entity' SubClassOf 'independent continuant'
http://purl.obolibrary.org/obo/BFO_0000001
entity
http://purl.obolibrary.org/obo/BFO_0000002
continuant
'continuant' SubClassOf 'entity'
http://purl.obolibrary.org/obo/COA_0000021
Extracellular structures
'Extracellular structures' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000022
Intracellular trafficking, secretion, and vesicular transport
'Intracellular trafficking, secretion, and vesicular transport' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000020
Cytoskeleton
'Cytoskeleton' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000029
Coenzyme transport and metabolism
'Coenzyme transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000027
Amino acid transport and metabolism
'Amino acid transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/BFO_0000025
object boundary
'object boundary' SubClassOf 'independent continuant'
http://purl.obolibrary.org/obo/COA_0000028
Nucleotide transport and metabolism
'Nucleotide transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000025
Energy production and conversion
'Energy production and conversion' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/COA_0000026
Carbohydrate transport and metabolism
'Carbohydrate transport and metabolism' SubClassOf 'metabolism'
http://purl.obolibrary.org/obo/BFO_0000029
site
'site' SubClassOf 'independent continuant'
http://purl.obolibrary.org/obo/COA_0000023
Posttranslational modification, protein turnover, chaperones
'Posttranslational modification, protein turnover, chaperones' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000024
metabolism
'metabolism' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/BFO_0000031
generically dependent continuant
'generically dependent continuant' SubClassOf 'dependent continuant'
http://purl.obolibrary.org/obo/BFO_0000034
function
'function' SubClassOf 'disposition'
http://purl.obolibrary.org/obo/BFO_0000035
process boundary
'process boundary' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/BFO_0000032
scattered temporal region
'scattered temporal region' SubClassOf 'temporal region'
http://purl.obolibrary.org/obo/COA_0000010
Replication, recombination and repair
'Replication, recombination and repair' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000054
background data set clustered by COG category
'background data set clustered by COG category' DisjointWith 'background data set clustered by non-COG category'
'background data set clustered by COG category' SubClassOf 'COG category clustered data set'
http://purl.obolibrary.org/obo/COA_0000055
user defined protein congregate
'user defined protein congregate' SubClassOf 'protein congregate'
http://purl.obolibrary.org/obo/COA_0000011
Chromatin structure and dynamics
'Chromatin structure and dynamics' SubClassOf 'information storage and processing'
http://purl.obolibrary.org/obo/COA_0000053
background data set clustered COG category by sepecies
'background data set clustered COG category by sepecies' EquivalentTo http://purl.obolibrary.org/obo/OBI_0000023 and ('has part' some
('background data set clustered by COG category' or 'background data set clustered by non-COG category')) and ('has part' only
('background data set clustered by COG category' or 'background data set clustered by non-COG category'))
http://purl.obolibrary.org/obo/COA_0000050
user defined protein list clustered by COG category
'user defined protein list clustered by COG category' SubClassOf 'COG category clustered data set'
'user defined protein list clustered by COG category' SubClassOf 'is about' some 'protein congregate'
'user defined protein list clustered by COG category' SubClassOf 'is part of' some 'user defined data set for COG enrichment analysis'
'user defined protein list clustered by COG category' DisjointWith 'user defined protein list clustered by non-COG category'
http://purl.obolibrary.org/obo/BFO_0000016
disposition
'disposition' SubClassOf 'realizable entity'
http://purl.obolibrary.org/obo/COA_0000018
Cell wall/membrane/envelope biogenesis
'Cell wall/membrane/envelope biogenesis' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000019
Cell motility
'Cell motility' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/BFO_0000017
realizable entity
'realizable entity' SubClassOf 'specifically dependent continuant'
http://purl.obolibrary.org/obo/COA_0000016
Defense mechanisms
' Defense mechanisms' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000017
Signal transduction mechanisms
'Signal transduction mechanisms' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000014
information storage and processing
'information storage and processing' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/COA_0000058
background data set clustered by non-COG category
'background data set clustered by non-COG category' SubClassOf 'non-COG category clustered data set'
'background data set clustered by COG category' DisjointWith 'background data set clustered by non-COG category'
http://purl.obolibrary.org/obo/COA_0000015
cellular processes and signaling
'cellular processes and signaling' SubClassOf 'COG Functional category'
http://purl.obolibrary.org/obo/COA_0000012
Cell cycle control, cell division, chromosome partitioning
'Cell cycle control, cell division, chromosome partitioning' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/COA_0000056
non-COG category clustered data set
'non-COG category clustered data set' SubClassOf http://purl.obolibrary.org/obo/OBI_0000648
http://purl.obolibrary.org/obo/BFO_0000019
quality
'quality' SubClassOf 'specifically dependent continuant'
http://purl.obolibrary.org/obo/COA_0000057
user defined protein list clustered by non-COG category
'user defined protein list clustered by non-COG category' SubClassOf 'non-COG category clustered data set'
'user defined protein list clustered by COG category' DisjointWith 'user defined protein list clustered by non-COG category'
http://purl.obolibrary.org/obo/COA_0000013
Nuclear structure
'Nuclear structure' SubClassOf 'cellular processes and signaling'
http://purl.obolibrary.org/obo/BFO_0000020
specifically dependent continuant
'specifically dependent continuant' SubClassOf 'dependent continuant'
http://purl.obolibrary.org/obo/BFO_0000023
role
'role' SubClassOf 'realizable entity'
http://purl.obolibrary.org/obo/BFO_0000021
temporal instant
'temporal instant' SubClassOf 'connected temporal region'
http://purl.obolibrary.org/obo/BFO_0000022
connected temporal region
'connected temporal region' SubClassOf 'temporal region'