Bioportal mappings to NIFSTD (nif) ver1.4
Bioportal mappings to Units of measurement (UO) ver1.21
Bioportal mappings to Medical Subject Headings (MSH) ver2009_2009_02_13
Helen Parkinson
Bioportal mappings to Mammalian phenotype (MP) ver1.309
Bioportal mappings to Zebrafish anatomy and development (ZFA) ver1.23
$version 1.9$
Ele Holloway
Date: 6th January 2010
Bioportal mappings to Foundational Model of Anatomy (FMA) ver3.0
Tomasz Adamusiak
Bioportal mappings to SNOMED Clinical Terms (SNOMEDCT) ver2009_01_31
Bioportal mappings to BRENDA tissue / enzyme source (BTO) ver1.3
Bioportal mappings to Chemical entities of biological interest (CHEBI) ver1.59
Bioportal mappings to Malaria Ontology (MALIDO) ver0.2b
Bioportal mappings to Drosophila gross anatomy (FBbt) ver1.30
Bioportal mappings to Mosquito gross anatomy (TGMA) ver1.10
Mappings: The Jackson Lab
Bioportal mappings to NCI Thesaurus (NCIt) ver09.07
Bioportal mappings to Minimal anatomical terminology (MAT) ver1.1
James Malone
Bioportal mappings to International Classification of Diseases (ICD-9) ver9
Bioportal mappings to Phenotypic quality (PATO) ver1.188
Mappings: CRISP Thesaurus Version 2.5.2.0
Bioportal mappings to Ontology for Biomedical Investigations (OBI) ver2009-11-06 Philly (aka version 1.0) Release Candidate
Bioportal mappings to Microarray experimental conditions (MO) ver1.3.1.1
Mappings:The Arabidopsis Information Resource (TAIR)
Mappings to Plant structure (PO)
Bioportal mappings to Human disease (DOID) ver1.88
Bioportal mappings to Cell type (CL) ver1.40
heating block
A heating block is an instrument or part of an instrument which raises or maintains the temperature of a sample to a defined constant temperature during certain parts of an assay[accessedResource: OBI_0400108][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
OBI_0400108
MO_663
obsolete_Beas2B
James Malone
true
Duplication, use EFO_0001089 instead
Gallus gallus
NCITaxon:9031
red junglefowl
chicken
James Malone
GM11992
James Malone
James Malone
ZF4
11beta,17,21-trihydroxypregna-1,4-diene-3,20-dione[accessedResource: CHEBI:8378][accessDate: 2009-11-30]
prednisolone
BioportalImporter v.1.2
CHEBI:8378
A glucocorticoid that has formula C21H28O5.[accessedResource: CHEBI:8378][accessDate: 2009-11-30]
nanometer
BioportalImporter v.1.2
A nanometer is a length unit which is equal to 1m x 10^-9.
UO:0000018
James Malone
nanometre
nm[accessedResource: UO:0000018][accessDate: 2009-11-30]
A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.[accessedResource: UO:0000018][accessDate: 2009-11-30]
FMAID:13890
XAO:0000167
parathyroid
Any of usually four small endocrine glands that are adjacent to or embedded in the thyroid gland and produce parathyroid hormone.[accessedResource: BTO:0000997][accessDate: 2009-11-30]
MA:0000128
EV:0100134
James Malone
MAT:0000082
TAO:0009207
EHDAA:3864
BioportalImporter v.1.2
BTO:0000997
parathyroid secreting cell[accessedResource: MAT:0000082][accessDate: 2009-11-30]
EHDAA:3870
CL:0000292
Tomasz Adamusiak
BioportalImporter v.1.2
guard cell
One of a pair of cells flanking the stomatal pore and causing the opening and closing of the pore by changes in turgor.[accessedResource: CL:0000292][accessDate: 2009-11-30]
James Malone
NIH3T3-L1
BV173
James Malone
Ele Holloway
CHEBI:50469
CHEBI:50469
James Malone
phospholipase A2 inhibitor
Tomasz Adamusiak
James Malone
Becker's muscular dystrophy
DOID:14691
Benign pseudohypertrophic muscular dystrophy
James Malone
Ele Holloway
WM115
GeneRIF:12860835
GeneRIF:15146954
GeneRIF:14701907
SNOMEDCT:195537001
GeneRIF:14616762
GeneRIF:12975385
GeneRIF:14697241
GeneRIF:15864120
GeneRIF:12566942
GeneRIF:12030900
GeneRIF:12443993
GeneRIF:15756929
GeneRIF:11803452
GeneRIF:15076153
GeneRIF:11792466
GeneRIF:11799081
ICD9:401-405.99
GeneRIF:14633140
GeneRIF:11877320
GeneRIF:12642508
DOID:10763
GeneRIF:15452033
GeneRIF:14736842
GeneRIF:14597849
GeneRIF:12172320
GeneRIF:12482634
GeneRIF:12023681
GeneRIF:11984003
GeneRIF:15048641
GeneRIF:15579504
GeneRIF:16115038
GeneRIF:16216916
GeneRIF:15596575
GeneRIF:15076188
GeneRIF:11849458
GeneRIF:12372003
GeneRIF:12399948
GeneRIF:15117826
GeneRIF:14514639
GeneRIF:15613621
GeneRIF:15950062
GeneRIF:12122115
GeneRIF:12023056
GeneRIF:12569260
GeneRIF:12388212
GeneRIF:15458945
GeneRIF:15121838
GeneRIF:15743788
GeneRIF:12025958
GeneRIF:15452029
GeneRIF:15797659
GeneRIF:12746411
GeneRIF:15662219
GeneRIF:11821707
GeneRIF:15563533
GeneRIF:15866055
GeneRIF:14622117
GeneRIF:12639805
GeneRIF:15640278
GeneRIF:15766329
GeneRIF:14752100
GeneRIF:15055249
GeneRIF:11882596
GeneRIF:14744461
GeneRIF:12878376
GeneRIF:15920074
GeneRIF:15042429
GeneRIF:14718360
GeneRIF:12105146
GeneRIF:15671602
GeneRIF:12536339
GeneRIF:12391843
HTN - Hypertension[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:14643573
GeneRIF:12397037
GeneRIF:15097232
GeneRIF:15100095
Persistently high systemic arterial BLOOD PRESSURE. Based on multiple readings (BLOOD PRESSURE DETERMINATION), hypertension is currently defined as when SYSTOLIC PRESSURE is consistently greater than 140 mm Hg or when DIASTOLIC PRESSURE is consistently 90 mm Hg or more.[accessedResource: MSH:D006973][accessDate: 2009-11-30]
GeneRIF:12730030
GeneRIF:12924622
GeneRIF:11986365
GeneRIF:14551242
GeneRIF:15738350
GeneRIF:12782219
GeneRIF:15340111
GeneRIF:12511547
GeneRIF:11840488
GeneRIF:16132104
GeneRIF:12165748
GeneRIF:12566941
GeneRIF:16091581
GeneRIF:11864924
GeneRIF:14553964
GeneRIF:16166162
GeneRIF:16027245
GeneRIF:15583131
GeneRIF:15935077
GeneRIF:14515335
GeneRIF:12072411
GeneRIF:12476421
GeneRIF:16103266
GeneRIF:15993631
GeneRIF:15797740
GeneRIF:14697676
GeneRIF:12511523
GeneRIF:16230521
GeneRIF:15738346
GeneRIF:15110905
GeneRIF:12771048
GeneRIF:14993194
Vascular Hypertensive disorder[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:14654758
GeneRIF:12484509
GeneRIF:12213905
GeneRIF:12574109
GeneRIF:15480095
GeneRIF:12506509
GeneRIF:16115223
GeneRIF:15914769
GeneRIF:15195688
GeneRIF:15956775
GeneRIF:15775784
GeneRIF:15621007
GeneRIF:12117726
GeneRIF:12388782
BioportalImporter v.1.2
MSH:D006973
GeneRIF:15489962
GeneRIF:15106800
GeneRIF:11924719
GeneRIF:11833851
GeneRIF:12695524
GeneRIF:15890973
GeneRIF:15662218
GeneRIF:12677022
James Malone
GeneRIF:12729892
GeneRIF:15887114
GeneRIF:12884521
GeneRIF:16172428
GeneRIF:12011775
GeneRIF:12460053
Hypertensive disease (disorder)[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:12544440
GeneRIF:12670745
GeneRIF:15037565
GeneRIF:15831367
GeneRIF:15050533
GeneRIF:15141213
GeneRIF:15015152
GeneRIF:16209130
GeneRIF:15471983
GeneRIF:15975728
GeneRIF:11988231
GeneRIF:12484516
GeneRIF:14621190
SNOMEDCT:194794002
GeneRIF:15716853
GeneRIF:12627873
GeneRIF:15554460
hyperpiesia[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:15201549
GeneRIF:15020309
Hypertensive disease NOS[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:12484512
GeneRIF:12669427
GeneRIF:15451779
GeneRIF:15146952
GeneRIF:12719438
GeneRIF:14719182
GeneRIF:16221215
GeneRIF:16051894
GeneRIF:15148501
GeneRIF:15194301
GeneRIF:12133472
GeneRIF:12145290
GeneRIF:16286571
GeneRIF:15896881
GeneRIF:15726836
GeneRIF:11952164
GeneRIF:15784171
GeneRIF:16037544
GeneRIF:15253101
GeneRIF:12181435
GeneRIF:15302839
GeneRIF:15886479
GeneRIF:15054141
GeneRIF:12457738
GeneRIF:14969735
GeneRIF:11976386
GeneRIF:12192616
GeneRIF:14506074
GeneRIF:12732339
GeneRIF:12359981
GeneRIF:14693679
GeneRIF:12751759
GeneRIF:14967839
GeneRIF:15480094
GeneRIF:15994241
GeneRIF:12013496
GeneRIF:11800057
GeneRIF:12244304
GeneRIF:15967869
GeneRIF:12452334
GeneRIF:15699473
GeneRIF:12844513
GeneRIF:14653307
GeneRIF:12218313
GeneRIF:12297007
GeneRIF:12450315
GeneRIF:15075196
GeneRIF:15492474
GeneRIF:12925562
GeneRIF:16115032
GeneRIF:14604995
GeneRIF:12468106
GeneRIF:15831363
GeneRIF:15340103
GeneRIF:15479166
GeneRIF:16203874
GeneRIF:11798846
GeneRIF:15469887
GeneRIF:15659047
GeneRIF:12364355
GeneRIF:15059935
GeneRIF:12566855
GeneRIF:15314687
GeneRIF:16172427
GeneRIF:16280269
GeneRIF:12050272
GeneRIF:15311109
GeneRIF:14506400
High blood pressure (& [essential hypertension])[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:16103269
GeneRIF:16130282
GeneRIF:14742306
GeneRIF:11880335
GeneRIF:15162499
GeneRIF:15809361
GeneRIF:15942458
GeneRIF:14707164
GeneRIF:15363817
GeneRIF:15850776
GeneRIF:12390711
GeneRIF:16144986
hypertension
GeneRIF:15304560
GeneRIF:16243970
GeneRIF:14499437
GeneRIF:12529502
GeneRIF:15598876
GeneRIF:12372791
GeneRIF:15773229
GeneRIF:15554451
GeneRIF:12021582
GeneRIF:15758045
GeneRIF:12775885
GeneRIF:12480131
GeneRIF:12646192
GeneRIF:15126519
GeneRIF:15055253
GeneRIF:15244100
GeneRIF:15123570
GeneRIF:14688210
GeneRIF:14744925
GeneRIF:12911547
GeneRIF:15944206
GeneRIF:15638826
GeneRIF:12644270
GeneRIF:15545843
GeneRIF:15746214
GeneRIF:12518270
GeneRIF:15905889
GeneRIF:12968128
Hypertensive disease[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:14608379
GeneRIF:15678704
GeneRIF:15198480
GeneRIF:13679998
GeneRIF:15131114
GeneRIF:14698468
GeneRIF:12950120
GeneRIF:12754175
HTN[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:14573316
GeneRIF:12215468
GeneRIF:14618677
GeneRIF:16097364
GeneRIF:15292344
ICD9:997.91
GeneRIF:14699441
GeneRIF:15728438
GeneRIF:15824199
GeneRIF:15831362
GeneRIF:12215464
GeneRIF:12817181
GeneRIF:12452325
GeneRIF:15643128
GeneRIF:11903302
GeneRIF:12865163
GeneRIF:15726642
GeneRIF:12215473
GeneRIF:16280279
GeneRIF:14568996
GeneRIF:15076154
GeneRIF:15996002
GeneRIF:11872379
Hypertensive disease NOS (disorder)[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:14499940
GeneRIF:11910303
GeneRIF:12429873
GeneRIF:12742250
GeneRIF:12515852
GeneRIF:15498966
GeneRIF:15824463
(Hypertensive disease) or (hypertension)[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:12706259
GeneRIF:15699451
GeneRIF:15753233
GeneRIF:11882615
GeneRIF:12419325
GeneRIF:14621188
GeneRIF:12670743
GeneRIF:12867255
GeneRIF:11882590
GeneRIF:15927846
Hypertension NOS[accessedResource: DOID:10763][accessDate: 2009-11-30]
GeneRIF:12446729
GeneRIF:15076189
GeneRIF:14988405
GeneRIF:16003175
GeneRIF:15190056
GeneRIF:15193619
GeneRIF:12872043
GeneRIF:15316241
GeneRIF:15837834
GeneRIF:15737640
GeneRIF:14620922
GeneRIF:16377929
GeneRIF:15146950
GeneRIF:14970360
GeneRIF:12217425
GeneRIF:15611369
GeneRIF:12648304
GeneRIF:15059929
GeneRIF:12429553
GeneRIF:15233982
GeneRIF:15809299
GeneRIF:15894833
GeneRIF:15809359
GeneRIF:11956157
GeneRIF:11692154
GeneRIF:15136501
GeneRIF:15475025
GeneRIF:14744462
GeneRIF:12891286
GeneRIF:12540629
GeneRIF:16012192
GeneRIF:15908963
GeneRIF:15928032
GeneRIF:14515341
GeneRIF:12032592
GeneRIF:12130711
GeneRIF:15966738
GeneRIF:15078565
GeneRIF:15097233
GeneRIF:15201550
GeneRIF:14871557
GeneRIF:11926353
GeneRIF:15952872
GeneRIF:15498972
GeneRIF:14966368
GeneRIF:16144989
GeneRIF:15480097
James Malone
BTO:0002322
cell property
An attribute of a cell e.g. CD8+
CD8+
BTO:0000738
James Malone
Ele Holloway
HL60
Human acute myeloid leukemia established from the peripheral blood of a 35-year-old woman with acute myeloid leukemia (AML FAB M2) in 1976.[accessedResource: BTO:0000738][accessDate: 2009-11-30]
BioportalImporter v.1.2
HL-60
James Malone
BioportalImporter v.1.2
anti-inflammatory drug
CHEBI:35472
CHEBI:35472
A substance that reduces or suppresses inflammation.[accessedResource: CHEBI:35472][accessDate: 2009-11-30]
A homogenizer is an instrument for the homogenization of various types of material, such as tissue, plant, food, soil, and many others.[accessedResource: OBI_0400109][accessDate: 2009-11-30]
homogenizer
OBI_0400109
MO_714
James Malone
BioportalImporter v.1.2
BioportalImporter v.1.2
UO:0000020
picometre
A length unit which is equal to 10^[-12] m.[accessedResource: UO:0000020][accessDate: 2009-11-30]
A picometer is a length unit which is equal to 1m x 10^-12.
James Malone
pm[accessedResource: UO:0000020][accessDate: 2009-11-30]
picometer
Human Immunodeficiency Virus 1[accessedResource: NCIt:C14220][accessDate: 2009-11-30]
NCIt:C14220
BioportalImporter v.1.2
HIV-1 seropositive
James Malone
Human Immunodeficiency Virus, Type 1[accessedResource: NCIt:C14220][accessDate: 2009-11-30]
The type species of lentivirus and the etiologic agent of acquired immunodeficiency syndrome (AIDS). It is characterized by its cytopathic effect and affinity for the T4-lymphocyte.
[Source: NCI Thesaurus C14220]
HIV-1
James Malone
AU565
ZR751
James Malone
James Malone
Ele Holloway
J82
CHEBI:28135
BioportalImporter v.1.2
A 14alpha-hydroxy steroid that has formula C27H44O6.[accessedResource: CHEBI:28135][accessDate: 2009-11-30]
(22R)-2beta,3beta,14,20,22-pentahydroxy-5beta-cholest-7-en-6-one[accessedResource: CHEBI:28135][accessDate: 2009-11-30]
ponasterone A
EHDAA:2975
MA:0000129
Lobular organ the parenchyma of which consists of ductless, glandular follicles filled with colloid. Examples: thyroid gland proper, accessory thyroid gland, lingual thyroid gland.[accessedResource: FMAID:9603][accessDate: 2009-11-30]
TAO:0001081
A two-lobed endocrine gland found in all vertebrates, located in front of and on either side of the trachea in humans, and producing various hormones, such as triiodothyronine and calcitonin.[accessedResource: BTO:0001379][accessDate: 2009-11-30]
BTO:0001379
SAEL:108
EV:0100133
FMAID:9603
ZFA:0001072
BioportalImporter v.1.2
EMAPA:18827
thyroid
MAT:0000081
James Malone
XAO:0000162
GM11993
James Malone
CL:0000988
BioportalImporter v.1.2
Tomasz Adamusiak
A blood cell.[accessedResource: BTO:0000574][accessDate: 2009-11-30]
hematopoietic cell
BTO:0000574
haematopoietic cell[accessedResource: CL:0000988][accessDate: 2009-11-30]
hemopoietic cell[accessedResource: CL:0000988][accessDate: 2009-11-30]
A cell of a hematopoietic lineage.[accessedResource: CL:0000988][accessDate: 2009-11-30]
haemopoietic cell[accessedResource: CL:0000988][accessDate: 2009-11-30]
Papillary cystadenocarcinoma, NOS (morphologic abnormality)[accessedResource: DOID:3110][accessDate: 2009-11-30]
GeneRIF:12911720
Papillary cystadenocarcinoma (morphologic abnormality)[accessedResource: DOID:3110][accessDate: 2009-11-30]
NCIt:C3777
SNOMEDCT:189687009
MSH:D018283
SNOMEDCT:2735009
An adenocarcinoma in which the tumor elements are arranged as finger-like processes or as a solid spherical nodule projecting from an epithelial surface.[accessedResource: MSH:D018283][accessDate: 2009-11-30]
A malignant cystic serous or mucinous epithelial neoplasm characterized by the presence of malignant glandular epithelial cells forming papillary structures. Stromal invasion is present.[accessedResource: NCIt:C3777][accessDate: 2009-11-30]
DOID:3110
James Malone
BioportalImporter v.1.2
papillary cystadenocarcinoma
Compound that increase urine volume by increasing the amount of osmotically active solute in the urine. It also increases the osmolarity of plasma.[accessedResource: CHEBI:50504][accessDate: 2009-11-30]
CHEBI:50504
James Malone
BioportalImporter v.1.2
CHEBI:50504
osmotic diuretic
CL:0000236
B Cell[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
BioportalImporter v.1.2
Immunologically important lymphocyte that is not thymus-dependent, is either short-lived and naive or long-lived and of memory phenotype, and resembles the bursa-derived lymphocyte of birds in that it is responsible for the production of immunoglobulins.[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
Consolidated with B cell (EFO_0000101), use B cell class instead.
Bursa-Dependent Lymphocytes[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
obsolete_B lymphocyte
B-Lymphocyte[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
true
A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive.[accessedResource: CL:0000236][accessDate: 2009-11-30]
B Cells[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
Bursa-Equivalent Lymphocyte[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
B-Lymphocytes[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
NCIt:C12474
James Malone
Ele Holloway
C32TG
MAT:0000415
BioportalImporter v.1.2
James Malone
BTO:0001152
The lower part of the axis of a plant embryo or seedling.[accessedResource: BTO:0001152][accessDate: 2009-11-30]
radicle
PO:0020031
CHEBI:50855
CHEBI:50855
James Malone
antiatherogenic agent
NCIt:C3113
Hyperplastic[accessedResource: NCIt:C3113][accessDate: 2009-11-30]
An abnormal increase in the number of cells in an organ or a tissue with consequent enlargement.[accessedResource: NCIt:C3113][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
An abnormal increase in the number of (otherwise normal) cells in an organ or a tissue with consequent enlargement.
BioportalImporter v.1.2
hyperplasia
MO_866
sampling time
Tomasz Adamusiak
Jie Zheng
James Malone
PAC2
James Malone
MO_562
cell line
true
A cell line is a cell factor which describes a population of cells cultured in vitro that are descended through one or more generations (and possible sub-cultures) from a single primary culture which was originally derived from part of an organism. The cells of such a population share common characteristics.
Jie Zheng
Tomasz Adamusiak
James Malone
Atwood et al (2000) OED of Biochemistry and Molecular Biology, Oxford University Press.
HCC1008
James Malone
Ele Holloway
James Malone
Ele Holloway
JAR
year
James Malone
BioportalImporter v.1.2
UO:0000036
A year is a derived time unit which is equal to 365.25 days.
A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.[accessedResource: UO:0000036][accessDate: 2009-11-30]
James Malone
ZR7530
James Malone
Ele Holloway
YPAC
antinematodal drug
CHEBI:35444
A substance used in the treatment or control of nematode infestations.[accessedResource: CHEBI:35444][accessDate: 2009-11-30]
CHEBI:35444
James Malone
BioportalImporter v.1.2
A carcinoma of any tissue within the head and neck region.
[Source: NCI Thesaurus C35850]
James Malone
NCIt:C35850
head and neck squamous cell carcinoma
NCIt:C34447
SCCHN[accessedResource: NCIt:C34447][accessDate: 2009-11-30]
BioportalImporter v.1.2
Squamous cell Carcinoma of Head and neck[accessedResource: DOID:5520][accessDate: 2009-11-30]
DOID:5520
Carcinoma of Head and Neck[accessedResource: NCIt:C35850][accessDate: 2009-11-30]
Head and Neck Carcinoma[accessedResource: NCIt:C35850][accessDate: 2009-11-30]
Squamous cell Carcinoma of the Head and neck[accessedResource: DOID:5520][accessDate: 2009-11-30]
Carcinoma of the Head and neck[accessedResource: DOID:5520][accessDate: 2009-11-30]
FMAID:9607
XAO:0000163
EMAPA:18768
MFO:0003240
A glandular structure of largely lymphoid tissue that functions especially in the development of the body's immune system, is present in the young of most vertebrates typically in the upper anterior chest or at the base of the neck, and tends to atrophy in the adult.[accessedResource: BTO:0001374][accessDate: 2009-11-30]
MAT:0000080
BTO:0001374
BioportalImporter v.1.2
EHDAA:9119
thymus
SAEL:107
MA:0000142
TAO:0001078
Thymus gland[accessedResource: FMAID:9607][accessDate: 2009-11-30]
James Malone
ZFA:0001078
EV:0100138
An immature B cell is a precursor B cell that has the phenotype surface IgM-positive and surface IgD-negative, and have not undergone class immunoglobulin class switching or peripheral encounter with antigen and activation.[accessedResource: CL:0000816][accessDate: 2009-11-30]
immature B cell
James Malone
BioportalImporter v.1.2
CL:0000816
newly formed B Cell[accessedResource: CL:0000816][accessDate: 2009-11-30]
immature B-lymphocyte[accessedResource: CL:0000816][accessDate: 2009-11-30]
An aryl sulfide that has formula C14H14ClN3O2S.[accessedResource: CHEBI:32509][accessDate: 2009-11-30]
BioportalImporter v.1.2
({4-chloro-6-[(2,3-dimethylphenyl)amino]pyrimidin-2-yl}sulfanyl)acetic acid[accessedResource: CHEBI:32509][accessDate: 2009-11-30]
pirinixic acid
CHEBI:32509
Tomasz Adamusiak
BioportalImporter v.1.2
melanocyte
An epidermal cell that produces melanin.[accessedResource: BTO:0000847][accessDate: 2009-11-30]
A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance.[accessedResource: CL:0000148][accessDate: 2009-11-30]
CL:0000148
BTO:0000847
James Malone
GM11994
NCIH322
James Malone
Ele Holloway
BioportalImporter v.1.2
OBI_0400103
MO_676
James Malone
DNA sequencer
A DNA sequencer is an instrument that determines the order of deoxynucleotides in deoxyribonucleic acid sequences.[accessedResource: OBI_0400103][accessDate: 2009-11-30]
James Malone
NCI-H929
James Malone
Ele Holloway
BHT101
sweetening agent
CHEBI:50505
BioportalImporter v.1.2
CHEBI:50505
James Malone
Substance that sweeten food, beverages, medications, etc.[accessedResource: CHEBI:50505][accessDate: 2009-11-30]
A measurement of the survival rate for a group of individuals suffering from a disease.
overall survival
James Malone
James Malone
Ele Holloway
HaCaT
A shoot component is a plant component which is specifically part of a plant shoot.
shoot component
RNAi
The act of alteration or modification of a cell e.g. RNAi
James Malone
cellular modification
Primary Carcinoma of Liver Cells[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
hepatocellular carcinoma
HCC[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
A malignant tumor that arises from hepatocytes. Hepatocellular carcinoma is relatively rare in the United States but very common in all African countries south of the Sahara and in Southeast Asia. Most cases are seen in patients over the age of 50 years, but this tumor can also occur in younger individuals and even in children. Hepatocellular carcinoma is more common in males than females and is associated with hepatitis B, hepatitis C, chronic alcohol abuse and cirrhosis. Serum elevation of alpha-fetoprotein occurs in a large percentage of patients with hepatocellular carcinoma. Grossly, hepatocellular carcinoma may present as a single mass, as multiple nodules, or as diffuse liver involvement. Microscopically, there is a wide range of differentiation from tumor to tumor (well differentiated to poorly differentiated tumors). Hepatocellular carcinomas quickly metastasize to regional lymph nodes and lung. The overall median survival of untreated liver cell carcinoma is about 4 months. The most effective treatment of hepatocellular carcinoma is complete resection of the tumor. Lately, an increasing number of tumors have been treated with liver transplantation. --2002
[Source: NCI Thesaurus C3099]
NCIt:C3099
BioportalImporter v.1.2
Carcinoma of Liver Cells[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
Primary Carcinoma of the Liver Cells[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
A malignant tumor that arises from hepatocytes. Hepatocellular carcinoma is relatively rare in the United States but very common in all African countries south of the Sahara and in Southeast Asia. Most cases are seen in patients over the age of 50 years, but this tumor can also occur in younger individuals and even in children. Hepatocellular carcinoma is more common in males than females and is associated with hepatitis B, hepatitis C, chronic alcohol abuse and cirrhosis. Serum elevation of alpha-fetoprotein occurs in a large percentage of patients with hepatocellular carcinoma. Grossly, hepatocellular carcinoma may present as a single mass, as multiple nodules, or as diffuse liver involvement. Microscopically, there is a wide range of differentiation from tumor to tumor (well differentiated to poorly differentiated tumors). Hepatocellular carcinomas quickly metastasize to regional lymph nodes and lung. The overall median survival of untreated liver cell carcinoma is about 4 months. The most effective treatment of hepatocellular carcinoma is complete resection of the tumor. Lately, an increasing number of tumors have been treated with liver transplantation.[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
Carcinoma of the Liver Cells[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
James Malone
Liver Cell Carcinoma[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
hepatoma[accessedResource: NCIt:C3099][accessDate: 2009-11-30]
CL:0000236
B-Cells[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
BioportalImporter v.1.2
Immunologically important lymphocyte that is not thymus-dependent, is either short-lived and naive or long-lived and of memory phenotype, and resembles the bursa-derived lymphocyte of birds in that it is responsible for the production of immunoglobulins.[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
Bursa-Equivalent Lymphocyte[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
B cell
James Malone
B-Lymphocytes[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
NCIt:C12474
A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive.[accessedResource: CL:0000236][accessDate: 2009-11-30]
B-Lymphocyte[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
Bursa-Dependent Lymphocytes[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
James Malone
Ele Holloway
Y79
James Malone
Ele Holloway
JM1
A micrometer is a length unit which is equal to 1m x 10^-6.
Tomasz Adamusiak
Jie Zheng
James Malone
BioportalImporter v.1.2
A length unit which is equal to one millionth of a meter or 10^[-6] m.[accessedResource: UO:0000017][accessDate: 2009-11-30]
MO_421
UO:0000017
micrometer
micrometre
um[accessedResource: UO:0000017][accessDate: 2009-11-30]
µm
James Malone
A thiazolidenedione that has formula C19H20N2O3S.[accessedResource: CHEBI:8228][accessDate: 2009-11-30]
BioportalImporter v.1.2
pioglitazone
5-{4-[2-(5-ethylpyridin-2-yl)ethoxy]benzyl}-1,3-thiazolidine-2,4-dione[accessedResource: CHEBI:8228][accessDate: 2009-11-30]
CHEBI:8228
OBI_0400105
MO_697
arrayer
James Malone
BioportalImporter v.1.2
An arrayer is an instrument which deposits biological material onto a substrate in a defined pattern.[accessedResource: OBI_0400105][accessDate: 2009-11-30]
James Malone
BEAS-2B
Beas2B
ZR75B
James Malone
CHEBI:35457
angiotensin-converting enzyme inhibito
James Malone
CHEBI:35457
GM11995
James Malone
James Malone
Ele Holloway
NCIH358
GeneRIF:15469899
A malignant mesenchymal tumor arising from the bone.[accessedResource: NCIt:C9312][accessDate: 2009-11-30]
SNOMEDCT:21708004
A usually aggressive malignant bone-forming mesenchymal tumor, predominantly affecting adolescents and young adults. It usually involves bones and less frequently extraosseous sites. It often involves the long bones (particularly distal femur, proximal tibia, and proximal humerus). Pain with or without a palpable mass is the most frequent clinical symptom. It may spread to other anatomic sites, particularly the lungs.[accessedResource: NCIt:C9145][accessDate: 2009-11-30]
GeneRIF:15221963
Sarcoma of Bone[accessedResource: NCIt:C9312][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C9312
GeneRIF:14719070
osteoid sarcoma[accessedResource: DOID:3347][accessDate: 2009-11-30]
GeneRIF:14704791
Osteosarcoma - disorder[accessedResource: DOID:3347][accessDate: 2009-11-30]
GeneRIF:11776394
GeneRIF:12709413
GeneRIF:12376862
Bone Sarcoma[accessedResource: NCIt:C9312][accessDate: 2009-11-30]
NCIt:C9145
GeneRIF:15870699
GeneRIF:13678785
GeneRIF:12544770
GeneRIF:12009018
GeneRIF:15026342
GeneRIF:14584080
James Malone
Sarcoma of the Bone[accessedResource: NCIt:C9312][accessDate: 2009-11-30]
GeneRIF:12479099
GeneRIF:11606061
GeneRIF:15796961
GeneRIF:11920494
GeneRIF:12393937
GeneRIF:15662138
GeneRIF:12660817
GeneRIF:14524531
GeneRIF:15488761
osteosarcoma
GeneRIF:14710359
GeneRIF:12154052
GeneRIF:12209731
GeneRIF:15609301
GeneRIF:15900593
GeneRIF:15448009
SNOMEDCT:307576001
GeneRIF:14645574
GeneRIF:15814634
GeneRIF:11746983
Osseous Sarcoma[accessedResource: NCIt:C9312][accessDate: 2009-11-30]
GeneRIF:11943335
GeneRIF:15310147
GeneRIF:15201972
GeneRIF:12237108
GeneRIF:15145525
GeneRIF:15583032
GeneRIF:15087387
GeneRIF:14679136
MSH:D012516
GeneRIF:16087680
GeneRIF:15476586
GeneRIF:12972634
GeneRIF:15701832
GeneRIF:15580288
GeneRIF:14528100
GeneRIF:14598886
GeneRIF:16035619
Osteosarcoma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:3347][accessDate: 2009-11-30]
GeneRIF:12054567
GeneRIF:12663494
DOID:3347
Osteogenic sarcoma[accessedResource: DOID:3347][accessDate: 2009-11-30]
A sarcoma originating in bone-forming cells, affecting the ends of long bones. It is the most common and most malignant of sarcomas of the bones, and occurs chiefly among 10- to 25-year-old youths. (From Stedman, 25th ed)[accessedResource: MSH:D012516][accessDate: 2009-11-30]
GeneRIF:12792742
GeneRIF:15922739
GeneRIF:12788094
GeneRIF:15668906
Skeletal sarcoma[accessedResource: DOID:3347][accessDate: 2009-11-30]
GeneRIF:16328004
GeneRIF:16157226
GeneRIF:15210853
GeneRIF:11927012
GeneRIF:15719069
GeneRIF:16010425
CL:0000813
A distinctly differentiated long-lived T cell that has the phenotype CD45RO-positive and CD127-positive.[accessedResource: CL:0000813][accessDate: 2009-11-30]
Tomasz Adamusiak
BTO:0003435
BioportalImporter v.1.2
memory T-lymphocyte[accessedResource: CL:0000813][accessDate: 2009-11-30]
memory T-cell
A T-cell that bears receptors for a specific foreign antigen encountered during a prior infection or vaccination. After an infection or a vaccination, some of the T-cells that participated in the response remain as memory T-cells, which can rapidly mobilize and clone themselves should the same antigen be re-encountered during a second infection at a later time.[accessedResource: BTO:0003435][accessDate: 2009-11-30]
low fat diet
SNOMEDCT:16208003
Tomasz Adamusiak
Jie Zheng
James Malone
NIH3T3
BM1604
James Malone
Ele Holloway
A body tissue consisting of long cells that contract when stimulated and produce motion.[accessedResource: BTO:0000887][accessDate: 2009-11-30]
BTO:0000887
muscle
James Malone
BioportalImporter v.1.2
Hodgkin's disease[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:15912144
GeneRIF:15638381
Hodgkin's disease NOS, unspecified site (disorder)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:12389614
DOID:8567
GeneRIF:15556690
Hodgkin's disease NOS (disorder)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:14959851
GeneRIF:15026356
A malignant disease characterized by progressive enlargement of the lymph nodes, spleen, and general lymphoid tissue. In the classical variant, giant usually multinucleate Hodgkin's and REED-STERNBERG CELLS are present; in the nodular lymphocyte predominant variant, lymphocytic and histiocytic cells are seen.[accessedResource: MSH:D006689][accessDate: 2009-11-30]
ICD9:201.9
Hodgkin disease[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:12038453
Hodgkin's disease (disorder)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:11986952
GeneRIF:11929801
lymphogranulomatosis[accessedResource: DOID:8567][accessDate: 2009-11-30]
HL[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:15291355
GeneRIF:12609061
Hodgkin sarcoma [obs][accessedResource: DOID:8567][accessDate: 2009-11-30]
James Malone
Hodgkin's disease NOS (& [lymphogranuloma malignant])[accessedResource: DOID:8567][accessDate: 2009-11-30]
Hodgkin's sarcoma NOS (disorder)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:16123212
GeneRIF:15933052
GeneRIF:15526025
Hodgkin's disease NOS[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:11855781
GeneRIF:12070005
ICD9:201
GeneRIF:12393409
Hodgkin's lymphoma NOS[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:12152987
GeneRIF:15120936
Lymphogranuloma, malignant (morphologic abnormality)[accessedResource: DOID:8567][accessDate: 2009-11-30]
ICD9:201.2
GeneRIF:15585627
GeneRIF:11830502
GeneRIF:12969974
Hodgkin lymphoma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:11839577
GeneRIF:11839668
GeneRIF:12824192
GeneRIF:15796964
GeneRIF:12456498
GeneRIF:12478664
Hodgkin's disease, unspecified type[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:14959852
Hodgkin's lymphoma
GeneRIF:12174874
GeneRIF:12594824
GeneRIF:14961078
GeneRIF:14962256
GeneRIF:11956621
Hodgkin's sarcoma of unspecified site (disorder)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:15712176
GeneRIF:15105810
BioportalImporter v.1.2
Hodgkin's sarcoma[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:12011765
GeneRIF:12389626
GeneRIF:15551733
GeneRIF:12429802
Hodgkin's disease NOS (morphologic abnormality)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:14645011
GeneRIF:12091121
Hodgkin's sarcoma (disorder)[accessedResource: DOID:8567][accessDate: 2009-11-30]
GeneRIF:15772702
GeneRIF:12875982
MSH:D006689
GeneRIF:16108827
GeneRIF:14654080
GeneRIF:12145210
GeneRIF:12431239
CS57603 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158627&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158627&type=germplasm
James Malone
CS57603
true
MO_548
Jie Zheng
James Malone
Tomasz Adamusiak
A cell type is a distinct morphological or functional form of cell. Examples are epithelial, glial etc.
epithelial, glial.
cell type
GeneRIF:12135130
hypertrophic cardiomyopathy
GeneRIF:11853553
GeneRIF:15698845
GeneRIF:12642359
GeneRIF:12810613
Hyper. obst. cardiomyopathy[accessedResource: DOID:11984][accessDate: 2009-11-30]
SNOMEDCT:233873004
ICD9:425.1
DOID:11984
GeneRIF:15056834
GeneRIF:12386147
GeneRIF:15317754
GeneRIF:11955864
GeneRIF:12376254
James Malone
primary hypertrophic cardiomyopathy (disorder) [Ambiguous][accessedResource: DOID:11984][accessDate: 2009-11-30]
GeneRIF:15737656
GeneRIF:12538779
GeneRIF:12110947
GeneRIF:14645200
GeneRIF:12474143
Hypertrophic obstructive cardiomyopathy (disorder)[accessedResource: DOID:11984][accessDate: 2009-11-30]
BioportalImporter v.1.2
A form of CARDIAC MUSCLE disease, characterized by left and/or right ventricular hypertrophy (HYPERTROPHY, LEFT VENTRICULAR; HYPERTROPHY, RIGHT VENTRICULAR), frequent asymmetrical involvement of the HEART SEPTUM, and normal or reduced left ventricular volume. Risk factors include HYPERTENSION; AORTIC STENOSIS; and gene MUTATION; (FAMILIAL HYPERTROPHIC CARDIOMYOPATHY).[accessedResource: MSH:D002312][accessDate: 2009-11-30]
SNOMEDCT:45227007
hypertrophic myocardiopathy[accessedResource: DOID:11984][accessDate: 2009-11-30]
Hypertrophic cardiomyopathy (disorder)[accessedResource: DOID:11984][accessDate: 2009-11-30]
GeneRIF:12169652
A condition in which the myocardium is hypertrophied without an obvious cause. The hypertrophy is generally asymmetric and may be associated with obstruction of the ventricular outflow tract.[accessedResource: NCIt:C34449][accessDate: 2009-11-30]
GeneRIF:12628722
MSH:D002312
GeneRIF:15856146
NCIt:C34449
GeneRIF:12754703
GeneRIF:15118286
GeneRIF:15314809
Hypertrophic obstructive cardiomyopathy[accessedResource: DOID:11984][accessDate: 2009-11-30]
GeneRIF:16288990
GeneRIF:15673802
GeneRIF:16004897
GeneRIF:12705874
GeneRIF:15582318
James Malone
Ele Holloway
G1E-ER4
Duplicate use EFO_0001260
1.8
obsolete_Wi38
true
James Malone
Ele Holloway
James Malone
BY5251
Tomasz Adamusiak
Jie Zheng
SNOMEDCT:226097005
high fat diet
CHEBI:17029
chitin
(1->4)-2-acetamido-2-deoxy-beta-D-glucan[accessedResource: CHEBI:17029][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
CS57716
http://www.arabidopsis.org/servlets/TairObject?id=1005158740&type=germplasm
CS57716 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158740&type=germplasm
OBI_0400106
MO_476
A centrifuge is an instrument, generally driven by a motor, that puts an object in rotation around a fixed axis, applying force perpendicular to the axis. The centrifuge works using the sedimentation principle, where the centripetal acceleration is used to separate substances of greater and lesser density.[accessedResource: OBI_0400106][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
centrifuge
NCITaxon:10088
Mus
mouse
mice
James Malone
Mus (commonly mice) is a small mammal belonging to the order of rodents.
obsolete_organism status
true
Use PATO qualities , e.g. dead
The stage premortem or postmortem at which the sample was processed for extraction of biomaterials. e.g. alive or dead
James Malone
GM12003
dorsomedial neurosecretory cell
James Malone
FBbt:00004011
phenobarbital
5-ethyl-5-phenylpyrimidine-2,4,6(1H,3H,5H)-trione[accessedResource: CHEBI:8069][accessDate: 2009-11-30]
CHEBI:8069
A barbiturate that has formula C12H12N2O3.[accessedResource: CHEBI:8069][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CARO:0000028
James Malone
female
BioportalImporter v.1.2
Tomasz Adamusiak
PATO:0000383
MO_506
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.[accessedResource: PATO:0000383][accessDate: 2009-11-30]
Jie Zheng
tumour of cranial and spinal nerves
Tomasz Adamusiak
James Malone
James Malone
CHEBI:35219
plant growth retardant
CHEBI:35219
3T3-L1
James Malone
3,3',5-triiodo-L-thyronine
CHEBI:18258
triiodothyronine
James Malone
Ele Holloway
BioportalImporter v.1.2
An iodothyronine that has formula C15H12I3NO4.[accessedResource: CHEBI:18258][accessDate: 2009-11-30]
James Malone
A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe.[accessedResource: BTO:0000232][accessDate: 2009-11-30]
Tomasz Adamusiak
NCIt:C12445
BTO:0000232
BioportalImporter v.1.2
NIFSTD:birnlex_1489
cerebellum peduncles
cerebellum
Cerebellar[accessedResource: NCIt:C12445][accessDate: 2009-11-30]
CHEBI:50112
CHEBI:50112
sex hormone
James Malone
BioportalImporter v.1.2
Any hormone that is responsible for controlling sexual characteristics and reproductive function.[accessedResource: CHEBI:50112][accessDate: 2009-11-30]
James Malone
EMAPA:18692
MAT:0000121
WBbt:0005777
urethra
FMAID:19667
MA:0000379
EV:0100099
The tube through which urine leaves the body. It empties urine from the bladder.[accessedResource: BTO:0001426][accessDate: 2009-11-30]
BioportalImporter v.1.2
XAO:0000153
Organ with organ cavity which connects the cavity of the urinary bladder to the exterior. Examples: There is only one urethra.[accessedResource: FMAID:19667][accessDate: 2009-11-30]
BTO:0001426
293TsiLL
James Malone
James Malone
Ele Holloway
Fu97
A dervied time unit is a derived unit which is a standard measure of the dimension in which events occur in sequence.
A derived unit which is a standard measure of the dimension in which events occur in sequence.[accessedResource: UO:0000149][accessDate: 2009-11-30]
UO:0000149
James Malone
BioportalImporter v.1.2
derived time unit
James Malone
The probability that an event will occur generally with unfavorable outcome.
risk status
James Malone
Ele Holloway
G402
NCIt:C12470
James Malone
BioportalImporter v.1.2
skin cell
James Malone
R28
CS57606 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158630&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158630&type=germplasm
James Malone
CS57606
A thin formative layer between the xylem and phloem of most vascular plants that gives rise to new cells and is responsible for secondary growth;nA lateral meristem in vascular plants, including the vascular cambium and cork cambium, that forms parallel rows of cells resulting in secondary tissues.[accessedResource: BTO:0000170][accessDate: 2009-11-30]
PO:0005597
BioportalImporter v.1.2
cambium
James Malone
MAT:0000223
BTO:0000170
The layer of active cells between xylem and phloem that gives rise to secondary tissues (e.g. bark)[accessedResource: MAT:0000223][accessDate: 2009-11-30]
James Malone
CS57715 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158739&type=germplasm
CS57715
http://www.arabidopsis.org/servlets/TairObject?id=1005158739&type=germplasm
BTO:0000088
Organ system which consists of the heart, the systemic and pulmonary arterial and venous system, the lymphatic and the portal venous system.[accessedResource: FMAID:7161][accessDate: 2009-11-30]
SAEL:16
EV:0100017
FBbt:00005057
cardiovascular system
FMAID:7161
MAT:0000016
ZFA:0000010
MA:0000010
BioportalImporter v.1.2
XAO:0000100
James Malone
TAO:0000010
CV system[accessedResource: FMAID:7161][accessDate: 2009-11-30]
MFO:000290
EHDAA:394
TADS:0000146
The system of heart and blood vessels.[accessedResource: BTO:0000088][accessDate: 2009-11-30]
EMAPA:16104
GM12004
James Malone
Jie Zheng
Tomasz Adamusiak
The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm).
James Malone
true
tissue, organ, system, sperm, blood or body location (arm).
MO_954
organism part
James Malone
dose
The total quantity or strength of a substance administered at one time.
An processed material which acquires images of fluorescence (induced with lasers) from labeled molecules on the surface of the microarray chip[accessedResource: OBI_0400104][accessDate: 2009-11-30]
OBI_0400104
MO_824
array scanner
James Malone
BioportalImporter v.1.2
chlorpromazine
James Malone
3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine[accessedResource: CHEBI:3647][accessDate: 2009-11-30]
A phenothiazine that has formula C17H19ClN2S.[accessedResource: CHEBI:3647][accessDate: 2009-11-30]
CHEBI:3647
BioportalImporter v.1.2
NCIt:C63663
Tomasz Adamusiak
Jie Zheng
fasting
http://en.wikipedia.org/wiki/Rhesus_Macaque
NCITaxon:9544
Macaca mulatta
Rhesus Macaque
The Rhesus Macaque (Macaca mulatta), often called the Rhesus Monkey, is one of the best known species of Old World monkeys.
James Malone
antimetabolite
BioportalImporter v.1.2
James Malone
CHEBI:35221
Substance, structurally similar to a metabolite, which competes with it or replaces it, and so prevents or reduces its normal utilization.[accessedResource: CHEBI:35221][accessDate: 2009-11-30]
CHEBI:35221
PATO:0000384
MO_652
BioportalImporter v.1.2
Jie Zheng
James Malone
male
CARO:0000027
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.[accessedResource: PATO:0000384][accessDate: 2009-11-30]
Tomasz Adamusiak
FBbt:00004905
CL:0000579
border follicle cell
Tomasz Adamusiak
4,4'-[pentane-1,5-diylbis(oxy)]dibenzenecarboximidamide[accessedResource: CHEBI:45081][accessDate: 2009-11-30]
A carboxamidine that has formula C19H24N4O2.[accessedResource: CHEBI:45081][accessDate: 2009-11-30]
CHEBI:45081
BioportalImporter v.1.2
pentamidine
naphthalene-1-acetic acid
1-naphthylacetic acid
BioportalImporter v.1.2
CHEBI:32918
Ele Holloway
James Malone
A naphthylacetic acid that has formula C12H10O2.[accessedResource: CHEBI:32918][accessDate: 2009-11-30]
naphthalen-1-ylacetic acid[accessedResource: CHEBI:32918][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which is science is taken to be equal to 30 days.[accessedResource: UO:0000035][accessDate: 2009-11-30]
A month is a derived time unit which is approximately equal to the length of time of one of cycle of the moon's phases which is science is taken to be equal to 30 days.
UO:0000035
month
GeneRIF:15325803
GeneRIF:12739786
GeneRIF:12399463
GeneRIF:12684695
GeneRIF:12784384
GeneRIF:15241467
GeneRIF:15077293
GeneRIF:12913926
GeneRIF:12870871
GeneRIF:12823854
GeneRIF:12509789
BioportalImporter v.1.2
GeneRIF:15313475
GeneRIF:11961170
GeneRIF:12937131
GeneRIF:15031666
GeneRIF:11472854
GeneRIF:12858434
GeneRIF:15986374
GeneRIF:15641088
GeneRIF:12913938
GeneRIF:16192646
GeneRIF:15794197
NCIt:C27206
GeneRIF:11294880
SNOMEDCT:69896004
GeneRIF:12115161
GeneRIF:12571844
GeneRIF:11856352
GeneRIF:16215318
Rheumatoid arthritis NOS[accessedResource: DOID:7148][accessDate: 2009-11-30]
GeneRIF:15272075
rheumatoid arthritis
GeneRIF:15464974
GeneRIF:12486608
GeneRIF:15603867
GeneRIF:12672182
GeneRIF:12193472
GeneRIF:15890884
GeneRIF:15077296
GeneRIF:12966588
GeneRIF:12847682
GeneRIF:12879272
GeneRIF:12723989
GeneRIF:14872483
GeneRIF:12115177
GeneRIF:14707104
GeneRIF:15338479
GeneRIF:12846056
GeneRIF:12060849
GeneRIF:15290725
GeneRIF:15950180
GeneRIF:15593216
GeneRIF:14558082
GeneRIF:12508778
GeneRIF:16200580
GeneRIF:15188357
GeneRIF:12242722
GeneRIF:12826377
GeneRIF:15167967
GeneRIF:12846052
GeneRIF:14687710
GeneRIF:12808103
GeneRIF:12571842
GeneRIF:12140750
MSH:D001172
GeneRIF:15457473
GeneRIF:14630402
GeneRIF:15751070
GeneRIF:12039073
DOID:7148
GeneRIF:15208781
GeneRIF:15535837
GeneRIF:15290745
GeneRIF:14994383
NCIt:C2884
GeneRIF:12651614
GeneRIF:15877293
GeneRIF:15759013
GeneRIF:12632415
GeneRIF:14532992
GeneRIF:12413610
GeneRIF:14734742
GeneRIF:15638044
GeneRIF:12115181
GeneRIF:12905469
GeneRIF:11466388
GeneRIF:12784383
GeneRIF:11708406
GeneRIF:14749527
GeneRIF:12913925
GeneRIF:14558087
GeneRIF:11916172
GeneRIF:12705898
GeneRIF:16014623
GeneRIF:12401808
GeneRIF:15967793
GeneRIF:15184985
GeneRIF:12610796
GeneRIF:14976209
Rheumatoid arthritis NOS (disorder)[accessedResource: DOID:7148][accessDate: 2009-11-30]
GeneRIF:11949889
GeneRIF:12454286
GeneRIF:15022344
GeneRIF:15457447
GeneRIF:12847274
GeneRIF:16175503
GeneRIF:16014635
GeneRIF:15875058
SNOMEDCT:287010008
GeneRIF:12553721
GeneRIF:11838837
Rheumatoid arthritis is a rheumatologic disorder described as an autoimmune disease that is usually a chronic disease and is characterized especially by pain, stiffness, inflammation, swelling, and sometimes destruction of joints.[accessedResource: DOID:7148][accessDate: 2009-11-30]
GeneRIF:15083890
GeneRIF:15007027
GeneRIF:12209506
GeneRIF:12070776
GeneRIF:11733367
GeneRIF:14730602
GeneRIF:12114257
GeneRIF:15725578
GeneRIF:15290728
GeneRIF:11983200
GeneRIF:16052590
GeneRIF:15529384
GeneRIF:15971427
GeneRIF:15077295
GeneRIF:15517620
GeneRIF:15896202
GeneRIF:12635863
GeneRIF:15591039
Atrophic Arthritis[accessedResource: DOID:7148][accessDate: 2009-11-30]
GeneRIF:15457444
GeneRIF:15188353
GeneRIF:14608356
GeneRIF:12208866
GeneRIF:15743888
GeneRIF:16098099
GeneRIF:12193736
GeneRIF:15254248
GeneRIF:12574395
GeneRIF:14994386
GeneRIF:11971877
GeneRIF:12739037
GeneRIF:16107870
James Malone
GeneRIF:15022318
GeneRIF:12091338
GeneRIF:12374691
GeneRIF:14979058
GeneRIF:12119414
GeneRIF:15940757
GeneRIF:12097415
GeneRIF:12833157
GeneRIF:15022314
GeneRIF:15641039
GeneRIF:15284119
GeneRIF:11857065
GeneRIF:15634264
GeneRIF:15641066
GeneRIF:12643440
GeneRIF:12444174
GeneRIF:12782719
GeneRIF:12847677
GeneRIF:16151416
GeneRIF:12067756
GeneRIF:12847280
GeneRIF:16142859
GeneRIF:15850806
GeneRIF:15248212
GeneRIF:12528108
GeneRIF:15742432
GeneRIF:12702665
GeneRIF:16127156
GeneRIF:12114309
GeneRIF:12465141
GeneRIF:14617033
GeneRIF:12235453
GeneRIF:14984939
GeneRIF:16320327
GeneRIF:12089610
GeneRIF:15632153
GeneRIF:12707342
GeneRIF:12759455
GeneRIF:12847680
ICD9:714.0
GeneRIF:14647385
GeneRIF:11920278
GeneRIF:15259375
GeneRIF:15753214
GeneRIF:15723199
GeneRIF:15045639
GeneRIF:12697270
GeneRIF:15569925
GeneRIF:11906819
GeneRIF:15146412
GeneRIF:12047361
GeneRIF:15170914
GeneRIF:11861275
GeneRIF:14578453
GeneRIF:12054474
GeneRIF:12135431
GeneRIF:16287870
GeneRIF:11708408
GeneRIF:12175089
GeneRIF:11801682
GeneRIF:15381082
GeneRIF:14705216
GeneRIF:16038875
GeneRIF:15761492
GeneRIF:12183385
GeneRIF:16134725
GeneRIF:15389525
GeneRIF:12165497
GeneRIF:11922198
GeneRIF:15794198
GeneRIF:12913922
GeneRIF:15205567
GeneRIF:15163116
GeneRIF:15841095
GeneRIF:12070782
GeneRIF:12564836
GeneRIF:16200584
GeneRIF:14505215
GeneRIF:16288117
GeneRIF:12847683
GeneRIF:12508775
GeneRIF:12734884
GeneRIF:11966773
GeneRIF:12064825
GeneRIF:15146416
GeneRIF:12168808
GeneRIF:14726963
GeneRIF:15641073
GeneRIF:13130464
A chronic systemic disease, primarily of the joints, marked by inflammatory changes in the synovial membranes and articular structures, widespread fibrinoid degeneration of the collagen fibers in mesenchymal tissues, and by atrophy and rarefaction of bony structures. Etiology is unknown, but autoimmune mechanisms have been implicated.
[Source: NCI Thesaurus C2884]
GeneRIF:15879144
GeneRIF:15515123
GeneRIF:11881821
GeneRIF:12928381
GeneRIF:15859024
GeneRIF:15077297
GeneRIF:12846053
GeneRIF:12517948
Arthritis or polyarthritis, rheumatic[accessedResource: DOID:7148][accessDate: 2009-11-30]
Rheumatoid arthritis (disorder)[accessedResource: DOID:7148][accessDate: 2009-11-30]
GeneRIF:15470519
GeneRIF:12594835
GeneRIF:12793199
GeneRIF:15022325
GeneRIF:12508786
GeneRIF:14558083
GeneRIF:12233877
GeneRIF:12846065
GeneRIF:11725485
GeneRIF:15022315
GeneRIF:16200608
GeneRIF:15146411
GeneRIF:14991531
GeneRIF:15457442
GeneRIF:16329077
GeneRIF:15934099
GeneRIF:16002730
GeneRIF:12610797
GeneRIF:12718750
GeneRIF:15959531
GeneRIF:12095257
GeneRIF:14872281
GeneRIF:14749980
GeneRIF:15170913
GeneRIF:12233873
GeneRIF:16366416
James Malone
293T
James Malone
R43
James Malone
CS57610
CS57610 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158634&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158634&type=germplasm
James Malone
Ele Holloway
F9
Cancer of CNS[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Tumor of the Central Nervous System[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Cancer of the Central Nervous System[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
BioportalImporter v.1.2
CNS Cancer[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Tumor of Central Nervous System[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Central Nervous System Neoplasm[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Neoplasm of CNS[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
James Malone
NIFSTD:birnlex_12618
central nervous system cancer
Malignant Tumor of CNS[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Central Nervous System Neoplasms, Malignant[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Tomasz Adamusiak
Cancer of the CNS[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant CNS Tumor[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant CNS Neoplasm[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Central Nervous System Tumor[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Neoplasm of Central Nervous System[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Cancer of Central Nervous System[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
CNS Neoplasms, Malignant[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
Malignant Neoplasm of the CNS[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
A primary or metastatic malignant neoplasm involving the brain or spinal cord. Representative examples include anaplastic astrocytoma, glioblastoma, anaplastic (malignant) meningioma, lymphoma, and metastatic carcinoma from another anatomic site.
[Source: NCI Thesaurus C4627]
Malignant Neoplasm of the Central Nervous System[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
NCIt:C4627
Malignant Tumor of the CNS[accessedResource: NCIt:C4627][accessDate: 2009-11-30]
James Malone
EMAPA:17950
Organ with organ cavity which connects the renal sinus to the urinary bladder. Examples: There are only two ureters, the right and the left ureters.[accessedResource: FMAID:9704][accessDate: 2009-11-30]
EHDAA:7009
EV:0100097
BTO:0001409
FMAID:9704
BioportalImporter v.1.2
MA:0000378
WBbt:0005777
WBbt:0004540
MAT:0000120
XAO:0000144
ureter
The tube that carries urine from the kidney to the bladder.[accessedResource: BTO:0001409][accessDate: 2009-11-30]
excretory duct cell[accessedResource: MAT:0000120][accessDate: 2009-11-30]
MAT:0000358
A short fleshy usually underground stem bearing minute scale leaves each of which bears a bud in its axil and is potentially able to produce a new plant.[accessedResource: BTO:0001400][accessDate: 2009-11-30]
BTO:0001400
PO:0004543
tuber
James Malone
BioportalImporter v.1.2
skin disease
Skin Disorder[accessedResource: NCIt:C3371][accessDate: 2009-11-30]
Cutaneous Disorder[accessedResource: NCIt:C3371][accessDate: 2009-11-30]
NCIt:C3371
James Malone
Skin Diseases and Manifestations[accessedResource: NCIt:C3371][accessDate: 2009-11-30]
SKIN AND SUBCUTANEOUS TISSUE DISORDERS[accessedResource: NCIt:C3371][accessDate: 2009-11-30]
BioportalImporter v.1.2
Any deviation from the normal structure or function of the skin or subcutaneous tissue that is manifested by a characteristic set of symptoms and signs.[accessedResource: NCIt:C3371][accessDate: 2009-11-30]
FBbt:00005065
BioportalImporter v.1.2
SAEL:2
Connective tissue in which fat is stored and which has the cells distended by droplets of fat.[accessedResource: BTO:0001487][accessDate: 2009-11-30]
fat tissue
BTO:0001487
James Malone
MA:0000009
EV:0100382
An organ system pertaining to fat.[accessedResource: FBbt:00005065][accessDate: 2009-11-30]
CS57714 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158738&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158738&type=germplasm
CS57714
James Malone
dermatologic drug
CHEBI:50177
James Malone
BioportalImporter v.1.2
A drug used to treat or prevent skin disorders or for the routine care of skin.[accessedResource: CHEBI:50177][accessDate: 2009-11-30]
CHEBI:50177
diet
Tomasz Adamusiak
Jie Zheng
NCIt:C15222
http://www.arabidopsis.org/servlets/TairObject?id=1005158743&type=germplasm
CS57719 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158743&type=germplasm
James Malone
CS57719
MO_508
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. E.g Drosophila melanogaster
Tomasz Adamusiak
organism
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.[accessedResource: OBI_0100026][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
NIFSTD:birnlex_376
true
Jie Zheng
OBI_0100026
Drosophila melanogaster
A carbon oxide that has formula CO.[accessedResource: CHEBI:17245][accessDate: 2009-11-30]
carbon monoxide
carbon monooxide[accessedResource: CHEBI:17245][accessDate: 2009-11-30]
carbon(II) oxide[accessedResource: CHEBI:17245][accessDate: 2009-11-30]
James Malone
CHEBI:17245
BioportalImporter v.1.2
human role
James Malone
A human role is a role that can be borne by a human.
vitamin
CHEBI:33229
BioportalImporter v.1.2
James Malone
CHEBI:33229
An organic substance that is distributed in foodstuffs, is distinct from the main organic components of food (protein, carbohydrate and fat) and is needed for the normal nutrition of the organism in question. The term "vitamines" (from vita + amines) was coined in 1912 by Casimir Funk, who believed that these compounds were amines.[accessedResource: CHEBI:33229][accessDate: 2009-11-30]
A549
James Malone
James Malone
Ele Holloway
D4
Tomasz Adamusiak
cumulus-oocyte complex
http://en.wikipedia.org/wiki/Ovulation
James Malone
Ele Holloway
SW1353
Ele Holloway
A biopterin that has formula C9H15N5O3.[accessedResource: CHEBI:15372][accessDate: 2009-11-30]
2-amino-6-(1,2-dihydroxypropyl)-5,6,7,8-tetrahydropteridin-4(3H)-one[accessedResource: CHEBI:15372][accessDate: 2009-11-30]
BioportalImporter v.1.2
5,6,7,8-tetrahydrobiopterin
CHEBI:15372
tetrahydrobiopterin
James Malone
NCITaxon:9541
long-tailed macaque
crab-eating macaque
James Malone
The Crab-eating Macaque (Macaca fascicularis) is a primarily arboreal macaque native to Southeast Asia.
Macaca fascicularis
PATO:0001340
MO_356
James Malone
hermaphrodite
NCIt:C45909
An organism having both male and female sexual characteristics and organs.[accessedResource: NCIt:C45909][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
intersex[accessedResource: PATO:0001340][accessDate: 2009-11-30]
Jie Zheng
A biological sex quality inhering in an organism or a population with both male and female sexual organs in one individual.[accessedResource: PATO:0001340][accessDate: 2009-11-30]
PC12
James Malone
lateral shoot meristem
James Malone
OntologyMappingImporter following MAT:0000225
MAT:0000225
PO:0006344
GCT
James Malone
Ele Holloway
EcR-RKO/KLF4
James Malone
Ele Holloway
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158639&type=germplasm
CS57615
CS57615 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158639&type=germplasm
orbitofrontal cortex
James Malone
FMA:242003
A site from which a sample, i.e. a statistically representative of the whole, is extracted from the whole. e.g. a liver sample
sampling site
James Malone
MO_591
biomaterial provider
Tomasz Adamusiak
James Malone
TBP-71Q-16
JAX:008216
TBP-71Q-16 is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/008216.html
The serumlike fluid that circulates through the ventricles of the brain, the cavity of the spinal cord, and the subarachnoid space, functioning in shock absorption.[accessedResource: BTO:0000237][accessDate: 2009-11-30]
The fluid that is contained within the brain ventricles, the subarachnoid space and the central canal of the spinal cord.[accessedResource: NCIt:C12692][accessDate: 2009-11-30]
cerebrospinal fluid
BioportalImporter v.1.2
CSF[accessedResource: NCIt:C12692][accessDate: 2009-11-30]
NCIt:C12692
BTO:0000237
James Malone
RPMI6666
James Malone
Ele Holloway
CHEBI:50249
James Malone
BioportalImporter v.1.2
anticoagulant
An agent that prevents blood clotting.[accessedResource: CHEBI:50249][accessDate: 2009-11-30]
CHEBI:50249
FBbt:00005055
EV:0100056
FMAID:7152
The organ system involved in the absorption of nutrients.[accessedResource: FBbt:00005055][accessDate: 2009-11-30]
Digestive system[accessedResource: FMAID:7152][accessDate: 2009-11-30]
EMAPA:16246
MAT:0000018
BioportalImporter v.1.2
digestive system component
James Malone
Alimentary system[accessedResource: FMAID:7152][accessDate: 2009-11-30]
TAO:0000339
MFO:0002980
ZFA:0000339
XAO:0000125
TADS:0000170
EHDAA:514
AAO:0000129
SAEL:28
MA:0000323
WBbt:0005748
GeneRIF:15616792
GeneRIF:14652441
GeneRIF:12459784
GeneRIF:15111323
GeneRIF:11922612
James Malone
MSH:D020388
GeneRIF:12798793
BioportalImporter v.1.2
GeneRIF:12754415
GeneRIF:12619170
SNOMEDCT:76670001
GeneRIF:14631123
GeneRIF:15328150
GeneRIF:14511675
Duchenne muscular dystrophy
GeneRIF:12387876
DOID:11723
GeneRIF:12754707
GeneRIF:12206800
GeneRIF:12031623
Duchenne muscular dystrophy (disorder)[accessedResource: DOID:11723][accessDate: 2009-11-30]
GeneRIF:12609501
An X-linked recessive muscle disease caused by an inability to synthesize DYSTROPHIN, which is involved with maintaining the integrity of the sarcolemma. Muscle fibers undergo a process that features degeneration and regeneration. Clinical manifestations include proximal weakness in the first few years of life, pseudohypertrophy, cardiomyopathy (see MYOCARDIAL DISEASES), and an increased incidence of impaired mentation. Becker muscular dystrophy is a closely related condition featuring a later onset of disease (usually adolescence) and a slowly progressive course. (Adams et al., Principles of Neurology, 6th ed, p1415)[accessedResource: MSH:D020388][accessDate: 2009-11-30]
GeneRIF:11968010
GeneRIF:12920092
Duchenne musc. dyst.[accessedResource: DOID:11723][accessDate: 2009-11-30]
GeneRIF:16295426
A progenitor cell committed to the erythroid lineage.[accessedResource: CL:0000038][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
CL:0000038
erythroid progenitor cell
Caucasian
NCIt:C41261
Tomasz Adamusiak
Jie Zheng
A mating type is a biomaterial factor which describes the type of sexual reproduction through isogamy occur in eukaryotes that undergo.
James Malone
mating type
CS57717
CS57717 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158741&type=germplasm
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158741&type=germplasm
organization role
James Malone
An organization role is a role which is borne by an organization.
James Malone
BioportalImporter v.1.2
A pyrazole that has formula C17H14F3N3O2S.[accessedResource: CHEBI:41423][accessDate: 2009-11-30]
4-[5-(4-methylphenyl)-3-(trifluoromethyl)-1H-pyrazol-1-yl]benzenesulfonamide[accessedResource: CHEBI:41423][accessDate: 2009-11-30]
CHEBI:41423
celecoxib
James Malone
MO_38
operator variation
A measurement of the effects of different investigators, laboratories, or organizations on experimental results are studied.
BeWo
James Malone
Ele Holloway
CHEBI:33286
BioportalImporter v.1.2
CHEBI:33286
An agrochemical is a substance that is used in agriculture or horticulture.[accessedResource: CHEBI:33286][accessDate: 2009-11-30]
agrochemical
James Malone
1-methyl-3-(propan-2-yl)-3,7-dihydro-1H-purine-2,6-dione[accessedResource: CHEBI:34795][accessDate: 2009-11-30]
BioportalImporter v.1.2
Ele Holloway
IBMX
James Malone
3-isobutyl-1-methyl-7H-xanthine
CHEBI:34795
A 3-isobutyl-1-methylxanthine that has formula C10H14N4O2.[accessedResource: CHEBI:34795][accessDate: 2009-11-30]
600MPE
James Malone
SW1417
James Malone
Ele Holloway
NCITaxon:9593
James Malone
Western gorilla
Gorilla gorilla
James Malone
R18
James Malone
Ele Holloway
GA10
ZEA:0015151
OntologyMappingImporter following MAT:0000224
MAT:0000224
PO:0020148
apical shoot meristem
James Malone
Tomasz Adamusiak
MO_890
array manufacturer
James Malone
JAX:100007
CB6F1 is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/100007.html
CB6F1
BioportalImporter v.1.2
James Malone
EHDAA:5464
MAT:0000108
BTO:0000233
SAEL:20
Cortex of cerebral hemisphere[accessedResource: FMAID:61830][accessDate: 2009-11-30]
Superficial layer of the brain, composed of glia and the cell bodies of neurons (soma).[accessedResource: FBbt:00003625][accessDate: 2009-11-30]
EV:0100166
MA:0000185
FMAID:61830
adult brain cortex[accessedResource: FBbt:00003625][accessDate: 2009-11-30]
cerebral cortex
FBbt:00003625
brain cortex
perikaryal rind[accessedResource: FBbt:00003625][accessDate: 2009-11-30]
EMAPA:17544
The surface layer of gray matter of the cerebrum that functions chiefly in coordination of sensory and motor information.[accessedResource: BTO:0000233][accessDate: 2009-11-30]
CS57616
CS57616 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158640&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158640&type=germplasm
James Malone
FMA:61857
BioportalImporter v.1.2
James Malone
Marginal gyrus[accessedResource: FMA:61857][accessDate: 2009-11-30]
superior frontal gyrus
Superior frontal convolution[accessedResource: FMA:61857][accessDate: 2009-11-30]
true
synonym with material entity
obsolete_sample factor
James Malone
Ele Holloway
RL952
CHEBI:50276
An inhibitor of bacterial enzymes of the DNA topoisomerases, Type I class that catalyze ATP-independent breakage of one of the two strands of DNA, passage of the unbroken strand through the break, and rejoining of the broken strand. These bacterial enzymes reduce the topological stress in the DNA structure by relaxing negatively, but not positively, supercoiled DNA.[accessedResource: CHEBI:50276][accessDate: 2009-11-30]
CHEBI:50276
James Malone
BioportalImporter v.1.2
topoisomerase I inhibitor
craniofacial tissue
James Malone
The larval cranium exclusive of the dorsal apotome.[accessedResource: TGMA:0000720][accessDate: 2009-11-30]
MAT:0000017
MA:0000316
epicranial plate[accessedResource: MAT:0000017][accessDate: 2009-11-30]
BioportalImporter v.1.2
FBbt:00003007
TGMA:0000720
ZFA:0001114
Clear cell carcinoma of kidney[accessedResource: DOID:4467][accessDate: 2009-11-30]
NCIt:C4033
Conventional (Clear cell) Renal cell Carcinoma[accessedResource: DOID:4467][accessDate: 2009-11-30]
true
Clear Cell Adenocarcinoma of the Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
James Malone
Clear Cell Renal Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
duplicate of EFO_0000349 (clear cell renal carcinoma)
GeneRIF:12576453
Conventional Renal cell Carcinoma[accessedResource: DOID:4467][accessDate: 2009-11-30]
BioportalImporter v.1.2
Clear Cell Carcinoma of the Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Renal Clear Cell Adenocarcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Conventional (Clear Cell) Renal Cell Adenocarcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear cell carcinoma of kidney is a renal cell carcinoma described as the most common type of renal cell carcinoma. The cancerous cells appear very pale or clear when examined under microscope. This cancer can be effectively treated with surgery if the tumor is confined to the kidney.[accessedResource: DOID:4467][accessDate: 2009-11-30]
A malignant epithelial neoplasm of the kidney characterized by the presence of lipid-containing clear cells within a vascular network. The tumor may metastasize to unusual sites and late metastasis is common.[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
SNOMEDCT:254915003
obsolete_renal clear cell carcinoma
Clear cell carcinoma of kidney (disorder)[accessedResource: DOID:4467][accessDate: 2009-11-30]
GeneRIF:14550470
1.8
Hypernephroma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Adenocarcinoma, Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Adenocarcinoma of Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
MSH:D002292
DOID:4467
A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.[accessedResource: MSH:D002292][accessDate: 2009-11-30]
Kidney Clear Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
GeneRIF:15709172
Grawitz Tumor[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
GeneRIF:15062033
Activity that requires physical or mental exertion, especially when performed to develop or maintain fitness.
exercise
James Malone
seedling
James Malone
BioportalImporter v.1.2
PO:0008037
BTO:0001228
The embryonic product of the germination of a seed; the young shoot and root axis.[accessedResource: BTO:0001228][accessDate: 2009-11-30]
TAO:0001105
FBbt:00000052
animal developmental tissue
James Malone
BioportalImporter v.1.2
CHEBI:9352
James Malone
BioportalImporter v.1.2
sulindac
A sulfoxide that has formula C20H17FO3S.[accessedResource: CHEBI:9352][accessDate: 2009-11-30]
{(1Z)-5-fluoro-2-methyl-1-[4-(methylsulfinyl)benzylidene]-1H-inden-3-yl}acetic acid[accessedResource: CHEBI:9352][accessDate: 2009-11-30]
James Malone
liver carcinoma
ischaemia reperfusion injury
CBA/CaJ
JAX:000654
CBA/CaJ is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/000654.html
James Malone
Polymorphic cell that form cartilage.[accessedResource: CL:0000138][accessDate: 2009-11-30]
CL:0000138
James Malone
BioportalImporter v.1.2
chondrocyte
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:28984
aluminium
A boron group element that has formula Al.[accessedResource: CHEBI:28984][accessDate: 2009-11-30]
SW1463
James Malone
Ele Holloway
NCIt:C12949
One of the cells of the body that compose the tissues, organs, and parts of that individual other than the germ cells.[accessedResource: BTO:0001268][accessDate: 2009-11-30]
BTO:0001268
somatic cell
BioportalImporter v.1.2
Somatic Cells[accessedResource: NCIt:C12949][accessDate: 2009-11-30]
James Malone
CHEBI:17925
alpha-D-glucose
BioportalImporter v.1.2
alpha-D-glucopyranose[accessedResource: CHEBI:17925][accessDate: 2009-11-30]
A D-glucopyranose that has formula C6H12O6.[accessedResource: CHEBI:17925][accessDate: 2009-11-30]
James Malone
congenital bilateral absence of the vas deferens
Congenital bilateral absence of the vas deferens (CAVD) is a condition in which the two vas deferens, male reproductive organs, fail to form properly prior to birth.
Wikipedia: http://en.wikipedia.org/wiki/Congenital_absence_of_the_vas_deferens
Blood present in the umbilical vessels at the time of delivery. If cryopreserved at birth, cord blood can serve as a source of autologous lymphocytes for transplantation to a patient later diagnosed and treated for leukemia or lymphoma.[accessedResource: NCIt:C13300][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
Cord Blood[accessedResource: NCIt:C13300][accessDate: 2009-11-30]
NCIt:C13300
umbilical cord blood
FMAID:7394
MAT:0000137
James Malone
MA:0000441
1: The cartilaginous and membranous tube descending from the larynx and branching into the right and left main bronchi. It is kept patent by a series of about twenty transverse horseshoe-shaped cartilages. Called also windpipe. n2: One of a system of minute tubes ramifying throughout the body of a terrestrial arthropod and delivering air to the tissues. Called also tracheal tubule.[accessedResource: BTO:0001388][accessDate: 2009-11-30]
TADS:000315
SAEL:111
trachea
XAO:0000118
Windpipe[accessedResource: FMAID:7394][accessDate: 2009-11-30]
EHDAA:3078
EMAPA:16853
FBbt:00005043
EV:0100040
BTO:0001388
BioportalImporter v.1.2
James Malone
CS57727
CS57727 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158751&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158751&type=germplasm
NCITaxon:39442
Mus musculus musculus
eastern European house mouse
James Malone
Tomasz Adamusiak
Jie Zheng
NCIt:C41260
Asian
An obsolete class is any class which is no longer required in the ontology but is maintained within the ontology file so that an audit trail exists for legacy reasons. Obsolete class and its children is disjoint with the main body of the ontology.
obsolete class
true
nervous system developmental tissue
birnlex_7083
Theiler stage 28
Tomasz Adamusiak
Jie Zheng
area unit
James Malone
BioportalImporter v.1.2
An area unit is a derived unit which is a standard measure of the amount of a 2-dimensional flat surface.
A derived unit which is a standard measure of the amount of a 2-dimensional flat surface.[accessedResource: UO:0000047][accessDate: 2009-11-30]
UO:0000047
articular cartilage
James Malone
BioportalImporter v.1.2
BTO:0001572
BTO:0001572
A thin layer of cartilage, usually hyaline, on the articular surface of bones in synovial joints.[accessedResource: BTO:0001572][accessDate: 2009-11-30]
true
obsolete_experiment type
An experiment type is an experimental factor describing the area of technology that was used to perform an experiment.
ChIP-Chip array
This is no longer needed - use process or study design (if the design is for study).
GeneRIF:15661050
GeneRIF:15319295
Renal Cell Adenocarcinoma[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:15245963
GeneRIF:12631591
SNOMEDCT:41607009
GeneRIF:14519627
GeneRIF:11759057
GeneRIF:15867365
GeneRIF:12874014
GeneRIF:11749694
RCC[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:15145526
GeneRIF:11714447
GeneRIF:15569051
GeneRIF:15448019
GeneRIF:12893366
GeneRIF:12736050
GeneRIF:15273700
GeneRIF:15365652
GeneRIF:12496483
Renal Cell Carcinoma, Stage Unspecified[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:12640117
GeneRIF:12375029
GeneRIF:15709180
GeneRIF:15701841
GeneRIF:14663360
GeneRIF:15107966
GeneRIF:12474536
GeneRIF:12208877
GeneRIF:12770739
renal cell carcinoma
GeneRIF:16221209
Kidney Adenocarcinoma[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:14676131
GeneRIF:11865300
SNOMEDCT:254915003
GeneRIF:15274119
GeneRIF:11896565
GeneRIF:14612902
GeneRIF:16157291
Adenocarcinoma of the Kidney[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:15502805
GeneRIF:16210641
GeneRIF:15906349
GeneRIF:14559244
GeneRIF:16237213
GeneRIF:12209956
GeneRIF:11920465
GeneRIF:15247770
GeneRIF:16244585
GeneRIF:15578072
GeneRIF:15665272
GeneRIF:15780567
GeneRIF:11840338
GeneRIF:15809750
Adenocarcinoma of Kidney[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:16077991
GeneRIF:15985433
GeneRIF:15608669
GeneRIF:12016154
GeneRIF:14565870
GeneRIF:14981908
GeneRIF:12707035
Hypernephroma (disorder)[accessedResource: DOID:4450][accessDate: 2009-11-30]
GeneRIF:15198927
GeneRIF:12970754
Renal cell carcinoma (morphologic abnormality)[accessedResource: DOID:4450][accessDate: 2009-11-30]
GeneRIF:12115583
GeneRIF:12766581
GeneRIF:16061872
GeneRIF:12597245
GeneRIF:14693268
GeneRIF:12402975
GeneRIF:15358199
GeneRIF:12209602
GeneRIF:11597145
BioportalImporter v.1.2
GeneRIF:15945081
GeneRIF:11921283
MSH:D002292
GeneRIF:11721640
GeneRIF:15791570
GeneRIF:12496484
GeneRIF:14648699
GeneRIF:12646256
GeneRIF:12781449
GeneRIF:15217953
GeneRIF:11712081
GeneRIF:15826766
GeneRIF:12594819
GeneRIF:15671550
GeneRIF:12684625
GeneRIF:15930277
GeneRIF:15350301
GeneRIF:12750296
GeneRIF:12025227
James Malone
GeneRIF:15300849
NCIt:C9385
GeneRIF:15086915
GeneRIF:14517280
SNOMEDCT:188251003
GeneRIF:16015044
GeneRIF:15747097
GeneRIF:12452054
GeneRIF:15893810
GeneRIF:14520461
GeneRIF:15900605
GeneRIF:15285879
GeneRIF:12845675
GeneRIF:12695553
GeneRIF:15102668
GeneRIF:12963978
GeneRIF:12207901
GeneRIF:16213477
GeneRIF:15375503
GeneRIF:16164647
A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.[accessedResource: MSH:D002292][accessDate: 2009-11-30]
GeneRIF:16254461
renal cell cancer[accessedResource: NCIt:C9385][accessDate: 2009-11-30]
GeneRIF:14712483
DOID:4450
GeneRIF:14534724
A carcinoma arising from the renal parenchyma. The incidence of renal cell carcinoma has increased by 35% from 1973 to 1991. There is a strong correlation between cigarette smoking and the development of renal cell carcinoma. The clinical presentation includes : hematuria, flank pain and a palpable lumbar mass. A high percentage of renal cell carcinomas are diagnosed when an ultrasound is performed for other purposes. Diagnostic procedures include: ultra sound, intravenous pyelography and computed tomography (CT). Radical nephrectomy is the standard intervention procedure. Renal cell carcinoma is generally considered to be resistant to radiation treatment and chemotherapy.
[Source: NCI Thesaurus C9385]
GeneRIF:12692265
GeneRIF:12036906
GeneRIF:12708469
GeneRIF:15998523
GeneRIF:14559790
GeneRIF:16145471
GeneRIF:12697836
GeneRIF:14696115
GeneRIF:14666709
GeneRIF:12584564
GeneRIF:15086466
liver heptocellular carcinoma
James Malone
CHEBI:47807
sulforaphane
4-isothiocyanatobutyl methyl sulfoxide[accessedResource: CHEBI:47807][accessDate: 2009-11-30]
1-isothiocyanato-4-(methylsulfinyl)butane[accessedResource: CHEBI:47807][accessDate: 2009-11-30]
A sulfoxide that has formula C6H11NOS2.[accessedResource: CHEBI:47807][accessDate: 2009-11-30]
BioportalImporter v.1.2
Any drug that binds to but does not activate cholinergic receptors, thereby blocking the actions of acetylcholine or cholinergic agonists.[accessedResource: CHEBI:48873][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:48873
cholinergic antagonist
CHEBI:48873
James Malone
house mouse
NCITaxon:10090
Mus musculus
lungs[accessedResource: MAT:0000135][accessDate: 2009-11-30]
EMAPA:16728
SAEL:62
One of the usually paired compound saccular thoracic organs that constitute the basic respiratory organ of air-breathing vertebrates.[accessedResource: BTO:0000763][accessDate: 2009-11-30]
James Malone
Lobular organ which has as its parts alveoli connected to the tracheobronchial tree. Examples: There are only two instances, right lung and left lung.[accessedResource: FMAID:7195][accessDate: 2009-11-30]
EV:0100042
MAT:0000135
lung
XAO:0000119
AAO:0000275
MA:0000415
FMAID:7195
BioportalImporter v.1.2
BTO:0000763
EHDAA:2205
myelodysplastic syndrome (MDS)-like
BDC2.5/NOD
JAX:004460
Tomasz Adamusiak
Jie Zheng
James Malone
BDC2.5/NOD is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/004460.html
A mouse strain developed by selection for diabetes (high fasting blood glucose) from F6 of the CTS strain
James Malone
Ele Holloway
SW1573
NCIt:C27263
DOID:2414
spindle cell tumor
James Malone
BioportalImporter v.1.2
Spindle Cell Neoplasm[accessedResource: NCIt:C27263][accessDate: 2009-11-30]
aggressive
NCIt:C14138
Tomasz Adamusiak
Jie Zheng
1: The proximal segment of the vertebrate hind limb extending from the hip to the knee and supported by a single large bone. n2: The segment of the leg immediately distal to the thigh in a bird or in a quadruped in which the true thigh is obscured.[accessedResource: BTO:0001376][accessDate: 2009-11-30]
thigh
James Malone
BioportalImporter v.1.2
BTO:0001376
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:50904
A role played by a chemical compound in the onset of allergic reaction and interacting with molecular pathways involved in allergy.[accessedResource: CHEBI:50904][accessDate: 2009-11-30]
allergenic agent
all-trans-retinoic acid
A retinoic acid that has formula C20H28O2.[accessedResource: CHEBI:15367][accessDate: 2009-11-30]
BioportalImporter v.1.2
(2E,4E,6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoic acid[accessedResource: CHEBI:15367][accessDate: 2009-11-30]
CHEBI:15367
osteoblast
James Malone
BioportalImporter v.1.2
A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone.[accessedResource: CL:0000062][accessDate: 2009-11-30]
CL:0000062
obsolete_compound factor
true
use synonym chemical compound
Mus musculus domesticus
NCITaxon:10092
James Malone
western European house mouse
An organization is a continuant entity which can play roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can play specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.
James Malone
BioportalImporter v.1.2
Jie Zheng
Tomasz Adamusiak
MO_177
OBI_0000245
An organization is a continuant entity which can play roles, has members, and has a set of organization rules. Members of organizations are either organizations themselves or individual people. Members can bear specific organization member roles that are determined in the organization rules. The organization rules also determine how decisions are made on behalf of the organization by the organization members.[accessedResource: OBI_0000245][accessDate: 2009-11-30]
organisation
organization
hepatic schizont
A schizont produced in the liver of the vertebrate host.[accessedResource: IDOMAL:0000322][accessDate: 2009-11-30]
IDOMAL:0000322
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
UO:0000080
An area unit which is equal to an area enclosed by a square with sides each 1 meter long.[accessedResource: UO:0000080][accessDate: 2009-11-30]
square meter
BioportalImporter v.1.2
m^2
A square meter is an area unit which is equal to an area enclosed by a square with sides each 1 meter long.
James Malone
square metre
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158746&type=germplasm
CS57722
CS57722 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158746&type=germplasm
obsolete - synonym with experiment type
true
experimental design refers to both observational and experimental (perturbational) studies. The organizing principles of the study including the relationships between assays and the steps taken to interpret the data.
obsolete_experimental design
Tomasz Adamusiak
James Malone
human
Homo sapiens
NIFSTD:birnlex_516
NCBITaxon:9606
ICD9:510-519.99
James Malone
SNOMEDCT:196057004
ICD9:519.1
ICD9:500-508.99
SNOMEDCT:196184000
SNOMEDCT:196243005
BioportalImporter v.1.2
Respiratory Disorder[accessedResource: NCIt:C26871][accessDate: 2009-11-30]
DOID:1579
ICD9:517.8
SNOMEDCT:196244004
ICD9:519.3
NCIt:C26871
ICD9:508.1
ICD9:503
ICD9:460-519.99
ICD9:519.8
ICD9:508.9
SNOMEDCT:196185004
ICD9:519
SNOMEDCT:196241007
ICD9:517
SNOMEDCT:266373008
ICD9:508
SNOMEDCT:50043002
ICD9:519.9
ICD9:516.9
ICD9:516
ICD9:516.8
ICD9:508.8
respiratory system disease
SNOMEDCT:196255004
BTO:0001658
aerial tissue
Existing or growing in the air rather than in the ground or in water.[accessedResource: BTO:0001658][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
aerial part
rosette stage
obsolete_CNS brain striatum MMHCC
Striatum[accessedResource: NCIt:C22622][accessDate: 2009-11-30]
CNS - Brain - Striatum (MMHCC)[accessedResource: NCIt:C22622][accessDate: 2009-11-30]
NCIt:C22622
true
Use corpus striatum instead (EFO_0000381)
BioportalImporter v.1.2
Lung Small Cell Neuroendocrine Carcinoma[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15502806
GeneRIF:15217946
GeneRIF:15864740
SNOMEDCT:254633006
GeneRIF:12079519
GeneRIF:15806155
GeneRIF:15514966
GeneRIF:12555074
GeneRIF:11804687
GeneRIF:15112277
GeneRIF:14560006
GeneRIF:11839685
GeneRIF:16222316
small cell lung cancer[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
Oat Cell Carcinoma of Lung[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:12792791
An anaplastic, highly malignant, and usually bronchogenic carcinoma composed of small ovoid cells with scanty neoplasm. It is characterized by a dominant, deeply basophilic nucleus, and absent or indistinct nucleoli. (From Stedman, 25th ed; Holland et al., Cancer Medicine, 3d ed, p1286-7)[accessedResource: MSH:D018288][accessDate: 2009-11-30]
GeneRIF:14592434
GeneRIF:12579323
GeneRIF:12177731
GeneRIF:16125276
GeneRIF:14672915
GeneRIF:12569360
GeneRIF:16077988
GeneRIF:16242000
GeneRIF:12356726
GeneRIF:16226111
GeneRIF:11782387
GeneRIF:12629521
GeneRIF:12611639
SNOMEDCT:254632001
GeneRIF:15205330
Small Cell Carcinoma of the Lung[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:15942654
GeneRIF:12605092
SCLC[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
Small Cell Neuroendocrine Carcinoma of the Lung[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:12767512
A highly aggressive subtype of lung carcinoma characterized by the presence of malignant small cells and necrosis. Metastatic disease is usually present at the time of diagnosis. (NCI05)
[Source: NCI Thesaurus C4917]
GeneRIF:15184245
GeneRIF:15387368
GeneRIF:15671551
GeneRIF:16140931
Lung Oat Cell Carcinoma[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:12474049
GeneRIF:14614010
GeneRIF:14507113
GeneRIF:14515059
GeneRIF:12393872
GeneRIF:12636057
DOID:5409
GeneRIF:14661059
GeneRIF:15279903
Oat cell carcinoma of lung (disorder)[accessedResource: DOID:5409][accessDate: 2009-11-30]
GeneRIF:11948117
GeneRIF:14758730
GeneRIF:15041716
GeneRIF:15870700
GeneRIF:12796027
small cell lung carcinoma
GeneRIF:14997382
GeneRIF:12499091
GeneRIF:12001123
GeneRIF:12432558
A highly aggressive subtype of lung carcinoma characterized by the presence of malignant small cells and necrosis. Metastatic disease is usually present at the time of diagnosis.[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:11836568
Small Cell Carcinoma of Lung[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:11955647
GeneRIF:12771999
NCIt:C4917
GeneRIF:15709164
GeneRIF:15623596
Small Cell Neuroendocrine Carcinoma of Lung[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
MSH:D018288
GeneRIF:16115696
James Malone
GeneRIF:16052521
GeneRIF:12684632
GeneRIF:12820319
GeneRIF:15205342
GeneRIF:12820318
Small cell carcinoma of lung (disorder)[accessedResource: DOID:5409][accessDate: 2009-11-30]
GeneRIF:16103065
GeneRIF:15026553
GeneRIF:12700635
Oat Cell Carcinoma of the Lung[accessedResource: NCIt:C4917][accessDate: 2009-11-30]
GeneRIF:12757855
GeneRIF:12591723
The last division of the small intestine extending between the jejunum and large intestine.[accessedResource: BTO:0000620][accessDate: 2009-11-30]
James Malone
EV:0100075
BioportalImporter v.1.2
XAO:0000237
The final section of the small intestine.[accessedResource: NCIt:C12387][accessDate: 2009-11-30]
BTO:0000620
MAT:0000282
SAEL:53
FMAID:7208
NCIt:C12387
MA:0000339
ileum
CHEBI:48876
James Malone
muscarinic antagonist
A drug that binds to but does not activate muscarinic cholinergic receptors, thereby blocking the actions of endogenous acetylcholine or exogenous agonists.[accessedResource: CHEBI:48876][accessDate: 2009-11-30]
CHEBI:48876
BioportalImporter v.1.2
MAT:0000134
XAO:0000120
gill
external gill[accessedResource: MAT:0000134][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
TAO:0000354
ZFA:0000354
A paired respiratory organ in fishes consisting of gill filaments on the gill arch in the posterior portion of the head and usually providing the primary exchange of gases between the blood and the surrounding water.[accessedResource: BTO:0000518][accessDate: 2009-11-30]
BTO:0000518
MFO:0003180
SAEL:37
FBbt:00003214
MAT:0000021
James Malone
BTO:0000522
XAO:0000158
TAO:0001158
BioportalImporter v.1.2
MA:0002564
MA:0002563
exocrine system
SAEL:33
gland
A cell, group of cells, or organ of endothelial origin that selectively removes materials from the blood, concentrates or alters them, and secretes them for further use in the body or for elimination from the body.[accessedResource: BTO:0000522][accessDate: 2009-11-30]
James Malone
R46
James Malone
Ele Holloway
SW1783
http://www.arabidopsis.org/servlets/TairObject?id=1005158883&type=germplasm
CS57859 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158883&type=germplasm
CS57859
James Malone
umbilical vein
NCIt:C33830
BTO:0001509
James Malone
BioportalImporter v.1.2
A vein that passes through the umbilical cord to the fetus and returns the oxygenated and nutrient blood from the placenta to the fetus.[accessedResource: BTO:0001509][accessDate: 2009-11-30]
(4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoic acid[accessedResource: CHEBI:28125][accessDate: 2009-11-30]
A docosahexaenoic acid that has formula C22H32O2.[accessedResource: CHEBI:28125][accessDate: 2009-11-30]
all-cis-docosa-4,7,10,13,16,19-hexaenoic acid
BioportalImporter v.1.2
CHEBI:28125
CHF[accessedResource: DOID:395][accessDate: 2009-11-30]
Congestive heart failure (disorder)[accessedResource: DOID:395][accessDate: 2009-11-30]
NCIt:C3080
GeneRIF:12234945
GeneRIF:12133421
GeneRIF:12948841
Congestive heart disease[accessedResource: DOID:395][accessDate: 2009-11-30]
GeneRIF:15458431
GeneRIF:14685701
Cardiac Failure Congestive[accessedResource: NCIt:C3080][accessDate: 2009-11-30]
GeneRIF:15007012
GeneRIF:12376296
Congestive heart failure, unspecified[accessedResource: DOID:395][accessDate: 2009-11-30]
GeneRIF:11972292
GeneRIF:12392981
GeneRIF:12133434
GeneRIF:15321927
A heterogeneous condition in which the heart is unable to pump out sufficient blood to meet the metabolic need of the body. Heart failure can be caused by structural defects, functional abnormalities (VENTRICULAR DYSFUNCTION), or a sudden overload beyond its capacity. Chronic heart failure is more common than acute heart failure which results from sudden insult to cardiac function, such as MYOCARDIAL INFARCTION.[accessedResource: MSH:D006333][accessDate: 2009-11-30]
ICD9:428.0
GeneRIF:12967639
congestive heart failure
GeneRIF:15475532
MSH:D006333
GeneRIF:12388270
SNOMEDCT:42343007
Congetive cardiac failure[accessedResource: DOID:395][accessDate: 2009-11-30]
James Malone
GeneRIF:12835956
GeneRIF:15704067
DOID:395
GeneRIF:12468107
GeneRIF:15861037
GeneRIF:15319210
GeneRIF:15601581
1. inadequacy of the heart so that as a pump it fails to maintain the circulation of blood, with the result that congestion and edema develop in the tissues; SEE ALSO forward heart failure, backward heart failure, right ventricular failure, left ventricular failure. SYN cardiac failure, cardiac insufficiency, congestive heart failure, myocardial insufficiency. 2. resulting clinical syndromes including shortness of breath, pitting edema, enlarged tender liver, engorged neck veins, and pulmonary rales in various combinations.[accessedResource: NCIt:C3080][accessDate: 2009-11-30]
GeneRIF:14729387
GeneRIF:12364464
BioportalImporter v.1.2
GeneRIF:12610310
GeneRIF:14575298
GeneRIF:15802562
GeneRIF:12135128
GeneRIF:12791592
A malignant neoplasm arising from tenosynovial tissue of the joints and in synovial cells of tendons and bursae. The legs are the most common site, but the tumor can occur in the abdominal wall and other trunk muscles. There are two recognized types: the monophasic (characterized by sheaths of monotonous spindle cells) and the biphasic (characterized by slit-like spaces or clefts within the tumor, lined by cuboidal or tall columnar epithelial cells). These sarcomas occur most commonly in the second and fourth decades of life. (From Dorland, 27th ed; DeVita Jr et al., Cancer: Principles & Practice of Oncology, 3d ed, p1363)[accessedResource: MSH:D013584][accessDate: 2009-11-30]
DOID:5485
GeneRIF:14507652
A malignant neoplasm characterized by the chromosomal translocation t(X;18)(p11;q11). It can occur at any age, but mainly affects young adults, more commonly males. Although any site can be affected, the vast majority of the cases arise in the deep soft tissues of extremities, especially around the knee. Microscopically, synovial sarcoma is classified as monophasic (with a spindle or epithelial cell component) or biphasic (with both spindle and epithelial cell components). Synovial sarcomas can recur or metastasize to the lungs, bones, and lymph nodes.
[Source: NCI Thesaurus C3400]
SNOMEDCT:63211008
GeneRIF:11895494
GeneRIF:16158422
GeneRIF:15467754
BioportalImporter v.1.2
SS[accessedResource: NCIt:C3400][accessDate: 2009-11-30]
MSH:D013584
Synovial sarcoma (morphologic abnormality)[accessedResource: DOID:5485][accessDate: 2009-11-30]
James Malone
synovial sarcoma
GeneRIF:12874758
GeneRIF:11733362
GeneRIF:15069540
GeneRIF:15735574
Synovial sarcoma (disorder)[accessedResource: DOID:5485][accessDate: 2009-11-30]
SNOMEDCT:302851001
GeneRIF:16029077
GeneRIF:12037676
GeneRIF:14871970
GeneRIF:12696068
NCIt:C3400
NCIt:C14172
benign
Tomasz Adamusiak
Jie Zheng
PATO:0000117
Size is a morphology quality which describes a material entity's physical magnitude.
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.[accessedResource: PATO:0000117][accessDate: 2009-11-30]
size
James Malone
BioportalImporter v.1.2
southeast Asian house mouse
James Malone
Mus musculus castaneus
NCITaxon:10091
James Malone
CS57732
http://www.arabidopsis.org/servlets/TairObject?id=1005158756&type=germplasm
CS57732 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158756&type=germplasm
NIFSTD:birnlex_160
NCITaxon:10114
Rattus
Tomasz Adamusiak
BioportalImporter v.1.2
rat
Mammals, Rats[accessedResource: NCIt:C14266][accessDate: 2009-11-30]
James Malone
A role played by a a biological sample in the context of a microarray experiment where the intent is that biological or technical variation is measured.
replicate
FBbt:00005418
anterior endoderm anlage in statu nascendi
James Malone
CHEBI:26155
James Malone
CHEBI:26155
BioportalImporter v.1.2
plant growth regulator
A chemical, natural or artificial, that can affect the rate of growth of a plant.[accessedResource: CHEBI:26155][accessDate: 2009-11-30]
NCIt:C22619
olfactory lobe
ZFA:0000402
Segment of neural tree organ which is continuous with a set of olfactory nerves and an olfactory tract.[accessedResource: FMAID:77624][accessDate: 2009-11-30]
BTO:0001362
EV:0100173
James Malone
An anterior projection of each cerebral hemisphere that is continuous anteriorly with the olfactory nerve;nA term applied to the olfactory apparatus on the lower surface of the frontal lobe of the brain. It consists of the olfactory bulb, tract, and trigone.[accessedResource: BTO:0001362][accessDate: 2009-11-30]
BioportalImporter v.1.2
MAT:0000116
Olfactory Bulb[accessedResource: NCIt:C22619][accessDate: 2009-11-30]
CNS - Brain - Olfactory Bulb (MMHCC)[accessedResource: NCIt:C22619][accessDate: 2009-11-30]
FMAID:77624
EHDAA:5480
SAEL:75
EMAPA:17778
atopy
SNOMEDCT:268721001
GeneRIF:14645456
GeneRIF:12605098
GeneRIF:14966479
behavioural disease
GeneRIF:12556907
SNOMEDCT:74732009
ICD9:307.9
SNOMEDCT:192639003
ICD9:307
GeneRIF:14523627
GeneRIF:11884350
GeneRIF:15386212
DOID:150
A disease of or relating to the manner that an organism conducts itself involving action and response to stimulation or the response of an individual, group, or species to its environment.[accessedResource: DOID:150][accessDate: 2009-11-30]
BioportalImporter v.1.2
ICD9:300-316.99
SNOMEDCT:192637001
ICD9:290-319.99
GeneRIF:12814372
James Malone
GeneRIF:14744462
behavioral disease
ICD9:307.59
GeneRIF:12218657
GeneRIF:12082566
GeneRIF:15341606
ICD9:307.5
NIFSTD:sao676858164
A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast).[accessedResource: CL:0000192][accessDate: 2009-11-30]
BTO:0002607
Human vulva leiomyosarcoma cell line; established from a 43-years old caucasian female.[accessedResource: BTO:0002607][accessDate: 2009-11-30]
non-striated muscle cell[accessedResource: CL:0000192][accessDate: 2009-11-30]
CL:0000192
Tomasz Adamusiak
BioportalImporter v.1.2
smooth muscle cell
primary aortic smooth muscle cell
James Malone
primary uterine smooth muscle cell
CHEBI:50103
CHEBI:50103
excitatory amino acid agonist
James Malone
BioportalImporter v.1.2
An agent that binds to and activates excitatory amino acid receptors.[accessedResource: CHEBI:50103][accessDate: 2009-11-30]
BioportalImporter v.1.2
FMAID:7409
bronchus
Bronchial trunk[accessedResource: FMAID:7409][accessDate: 2009-11-30]
James Malone
MAT:0000133
main bronchus[accessedResource: MAT:0000133][accessDate: 2009-11-30]
EV:0100041
EMAPA:16849
BTO:0001340
MA:0000436
EHDAA:3072
XAO:0000121
SAEL:14
Either of the two primary divisions of the trachea that lead respectively into the right and the left lung.[accessedResource: BTO:0001340][accessDate: 2009-11-30]
MAT:0000020
James Malone
animal fluid
sulfur dioxide[accessedResource: CHEBI:18422][accessDate: 2009-11-30]
dioxidosulfur[accessedResource: CHEBI:18422][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:18422
sulphur dioxide
A sulfur oxide that has formula O2S.[accessedResource: CHEBI:18422][accessDate: 2009-11-30]
James Malone
CS57867 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158891&type=germplasm
CS57867
http://www.arabidopsis.org/servlets/TairObject?id=1005158891&type=germplasm
SW1990
James Malone
Ele Holloway
James Malone
DOID:12930
Same as dilated cardiomyopathy EFO_0000407
Cardiomyopathy, Dilated[accessedResource: DOID:12930][accessDate: 2009-11-30]
true
MSH:D002311
Tomasz Adamusiak
SNOMEDCT:399020009
SNOMEDCT:195021004
obsolete_congestive cardiomyopathy
BioportalImporter v.1.2
A form of CARDIAC MUSCLE disease that is characterized by ventricular dilation, VENTRICULAR DYSFUNCTION, and HEART FAILURE. Risk factors include SMOKING; ALCOHOL DRINKING; HYPERTENSION; INFECTION; PREGNANCY; and mutations in the LMNA gene encoding LAMIN TYPE A, a NUCLEAR LAMINA protein.[accessedResource: MSH:D002311][accessDate: 2009-11-30]
primary dilated cardiomyopathy (disorder)[accessedResource: DOID:12930][accessDate: 2009-11-30]
Congestive cardiomyopathy (disorder)[accessedResource: DOID:12930][accessDate: 2009-11-30]
Congestive cardiomyopathy[accessedResource: DOID:12930][accessDate: 2009-11-30]
1.7
blood component
https://www.cbil.upenn.edu/RADQuerier/php/displayStudy.php?study_id=449
disturbed flow regions
Tomasz Adamusiak
Jie Zheng
Athero-susceptible regions of aorta.
area
James Malone
BioportalImporter v.1.2
An area is a size quality which describes the two dimensional extent of a material entity.
A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.[accessedResource: PATO:0001323][accessDate: 2009-11-30]
PATO:0001323
James Malone
Mus caroli
NCITaxon:10089
Ryukyu mouse
James Malone
CS57731 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158755&type=germplasm
CS57731
http://www.arabidopsis.org/servlets/TairObject?id=1005158755&type=germplasm
exposure
exposure to cigarette smoke
The act of subjecting someone or something to an influencing experience. E.g. exposure to cigarette smoke
James Malone
Made obsolete: considered as synonym to invasive ductal carcinoma
true
obsolete_infiltrating ductal carcinoma
James Malone
BioportalImporter v.1.0
MAT:0000023
appendage
MAT:0000112
hypothalamus
ZFA:0000032
James Malone
BTO:0000614
EV:0100225
A basal part of the diencephalon that lies beneath the thalamus on each side, forms the floor of the third ventricle, and includes vital autonomic regulatory centers.nThe ventral part of the diencephalon that forms the floor and part of the lateral wall of the third ventricle. Anatomically, it includes the preoptic area, optic tract, optic chiasm, mammillary bodies, tuber cinereum, infundibulum, and neurohypophysis, but for physiological purposes the neurohypophysis is considered a distinct structure. The hypothalamus may be divided into five regions or areas (area hypothalamica rostralis, area hypothalamica dorsalis, area hypothalamica intermedia, area hypothalamica lateralis and area hypothalamica posterior) or into three longitudinal zones (periventricular zone, medial zone, and lateral zone). The hypothalamic nuclei constitute that part of the corticodiencephalic mechanism that activates, controls and integrates the peripheral autonomic mechanisms, endocrine activity, and many somatic functions, e.g., a general regulation of water balance, body temperature, sleep, and food intake, and the development of secondary sex characteristics. The hypothalamus secretes vasopressin and oxytocin, which are stored in the pituitary, as well as many releasing factors (hypophysiotropic hormones), by means of which it exerts control over functions of the adenohypophysis.[accessedResource: BTO:0000614][accessDate: 2009-11-30]
SAEL:52
EMAPA:17536
TAO:0000032
Preoptico-hypothalamic region[accessedResource: FMAID:62008][accessDate: 2009-11-30]
NCIt:C22616
FMAID:62008
BioportalImporter v.1.2
Preoptico-hypothalamic area[accessedResource: FMAID:62008][accessDate: 2009-11-30]
EHDAA:5446
MA:0000173
CNS - Brain - Hypothalamus (MMHCC)[accessedResource: NCIt:C22616][accessDate: 2009-11-30]
Tomasz Adamusiak
NIFSTD:birnlex_734
An experiment in which changes in DNA sequence copy number are analysed. For example the analysis of LOH in tumor cells vs a non diseased sample or the comparison of clinical isolated of disease causing bacteria.
comparative genomic hybridization
ArrayExpress production team
James Malone
http://jaxmice.jax.org/strain/002248.html
NIFSTD:birnlex_106
129S1/SvImJ
Tomasz Adamusiak
James Malone
NIFSTD:sao1394521419
CL:0000127
A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury.[accessedResource: CL:0000127][accessDate: 2009-11-30]
astrocyte
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
anterior endoderm primordium
James Malone
FBbt:00005524
mesophyll cell
PO:0004006
Tomasz Adamusiak
Dorsal skin is a skin found at the dorsal area of an animal.
James Malone
dorsal skin
OntologyMappingImporter following MAT:0000165
James Malone
WBbt:0005178
MAT:0000165
hermaphrodite gonad
A broad flat muscle of the calf of the leg lying immediately below the gastrocnemius.[accessedResource: BTO:0001265][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
soleus muscle
BTO:0001265
TADS:0000089
Defined by Snodgrass as "a simple sense organ, or one of the structural units of a compound sense organ," and by Schneider as "a specialized area of the integument, consisting of formative cells, the sensory nerve cells, and, in some cases, auxiliary cells".[accessedResource: TGMA:0000540][accessDate: 2009-11-30]
BioportalImporter v.1.2
A simple epithelial sense organ of an invertebrate (as an insect) usually in the form of a spine, plate, rod, cone, or peg that is composed of one or a few cells with a nerve connection.[accessedResource: BTO:0001237][accessDate: 2009-11-30]
BTO:0001237
TGMA:0000540
MAT:0000163
seta[accessedResource: MAT:0000163][accessDate: 2009-11-30]
TADS:0000301
sensillum
WBbt:0006929
James Malone
James Malone
CS57854
CS57854 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158878&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158878&type=germplasm
James Malone
intervertebral disc
BioportalImporter v.1.2
Intervertebral disk[accessedResource: FMA:10446][accessDate: 2009-11-30]
FMA:10446
MA:0000110
James Malone
Ele Holloway
SW403
Tomasz Adamusiak
BioportalImporter v.1.2
NIFSTD:nlx_chem_20090603
CHEBI:35476
antipsychotic drug
Antipsychotic drugs are agents that control agitated psychotic behaviour, alleviate acute psychotic states, reduce psychotic symptoms, and exert a quieting effect.[accessedResource: CHEBI:35476][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:26764
Any steroid that act as hormone.[accessedResource: CHEBI:26764][accessDate: 2009-11-30]
steroid hormone
DOID:3907
SNOMEDCT:254634000
Squamous Cell Carcinoma of the Lung[accessedResource: NCIt:C3493][accessDate: 2009-11-30]
Squamous Cell Carcinoma of Lung[accessedResource: NCIt:C3493][accessDate: 2009-11-30]
GeneRIF:12107845
A carcinoma arising from malignant squamous bronchial epithelial cells and characterized by the presence of keratinization and/or intercellular bridges. Cigarette smoking and arsenic exposure are strongly associated with squamous cell lung carcinoma.
[Source: NCI Thesaurus C3493]
GeneRIF:15889794
James Malone
Epidermoid Cell Carcinoma of Lung[accessedResource: NCIt:C3493][accessDate: 2009-11-30]
Squamous cell carcinoma of lung (disorder)[accessedResource: DOID:3907][accessDate: 2009-11-30]
NCIt:C3493
Epidermoid Cell Carcinoma of the Lung[accessedResource: NCIt:C3493][accessDate: 2009-11-30]
squamous cell lung carcinoma
Epidermoid Cell Lung Carcinoma[accessedResource: NCIt:C3493][accessDate: 2009-11-30]
BioportalImporter v.1.2
true
Use of spiked in controls in a measurement of the spiked in external/internal ratio
external control ratio
BioportalImporter v.1.2
James Malone
XAO:0000122
SAEL:48
MAT:0000022
haemopoietic system
MA:0002434
hematological system[accessedResource: MAT:0000022][accessDate: 2009-11-30]
Made obsolete: considered as synonym to invasive lobular carcinoma
obsolete_infiltrating lobular carcinoma
true
James Malone
The terminal bud (0.1 - 1.0 mm) of a plant, which consists of the apical meristem (0.05 - 0.1 mm) and the immediate surrounding leaf primordia and developing leaves and adjacent stem tissue.[accessedResource: BTO:0000247][accessDate: 2009-11-30]
BioportalImporter v.1.2
shoot apex
PO:0000037
BTO:0000247
keratocyte
prickle cell
EV:0200066
James Malone
Ele Holloway
The section of the small intestine that comprises the first two fifths beyond the duodenum and that is larger, thicker-walled, and more vascular and has more circular folds than the ileum.[accessedResource: BTO:0000657][accessDate: 2009-11-30]
MA:0000340
James Malone
BTO:0000657
EV:0100074
The portion of the small intestine that extends from the duodenum to the ileum.
[Source: NCI Thesaurus C12388]
MAT:0000045
FMAID:7207
SAEL:56
NCIt:C12388
jejunum
BioportalImporter v.1.2
<WEB> http://en.wikipedia.org/wiki/ChIP-on-chip
James Malone
ChIP-Chip
An experiment where chromatin immunoprecipitation (ChIP) is used in combination with microarray technology.
NCIt:C22615
obsolete_CNS brain hippocampus MMHCC
Hippocampus[accessedResource: NCIt:C22615][accessDate: 2009-11-30]
CNS - Brain - Hippocampus (MMHCC)[accessedResource: NCIt:C22615][accessDate: 2009-11-30]
Obsolete - term hippocampus already exists
BioportalImporter v.1.2
true
FBbt:00000444
anterior midgut primordium
James Malone
basal cell
James Malone
CL:0000646
James Malone
CS57733 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158757&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158757&type=germplasm
CS57733
A capillary tube; especially: any of the smallest blood vessels connecting arterioles with venules and forming networks throughout the body.[accessedResource: BTO:0002045][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
NCIt:C12685
BTO:0002045
capillary
male genital system
MA:0000396
FMAID:45664
EMAPA:17968
TADS:0000460
BioportalImporter v.1.2
XAO:0000155
EV:0100101
male reproductive system
BTO:0000082
EHDAA:8136
ZFA:0000242
The reproductive system in men includes the prostate, the testes, and the penis.[accessedResource: BTO:0000082][accessDate: 2009-11-30]
MAT:0000029
WBbt:0005574
James Malone
stem cell
A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.[accessedResource: CL:0000034][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CL:0000034
(5S,6R,7R,9R)-6-methoxy-5-methyl-7-methylamino-6,7,8,9,15,16-hexahydro-5H,14H-5,9-epoxy-4b,9a,15-triazadibenzo[b,h]cyclonona[1,2,3,4-jkl]cyclopenta[e]-as-indacen-14-one[accessedResource: CHEBI:15738][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
An indolocarbazole alkaloid that has formula C28H26N4O3.[accessedResource: CHEBI:15738][accessDate: 2009-11-30]
CHEBI:15738
staurosporine
James Malone
Ele Holloway
SW48
MA:0000309
vertebra
BioportalImporter v.1.2
James Malone
Irregular bone that articulates with other vertebrae, or with one other vertebra and the skull or the sacrum[accessedResource: FMA:9914][accessDate: 2009-11-30]
FMA:9914
http://www.arabidopsis.org/servlets/TairObject?id=1005158882&type=germplasm
James Malone
CS57858
CS57858 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158882&type=germplasm
BioportalImporter v.1.2
MAT:0000152
chaeta[accessedResource: FBbt:00005177][accessDate: 2009-11-30]
A sensillum with a long, unicellular, setiform outgrowth that is strongly chitinized.[accessedResource: FBbt:00005177][accessDate: 2009-11-30]
FBbt:00005177
sensillum chaeticum[accessedResource: FBbt:00005177][accessDate: 2009-11-30]
James Malone
sensory bristle
James Malone
BioportalImporter v.1.2
CHEBI:22582
antibiotic
Substance produced by, and obtained from, certain living cells (especially bacteria, yeasts and moulds), or an equivalent synthetic substance, which is biostatic or biocidal at low concentrations to some other form of life, especially pathogenic or noxious organisms.[accessedResource: CHEBI:22582][accessDate: 2009-11-30]
antiphospholipid syndrome
DOID:2988
primary antiphospholipid syndrome
James Malone
BioportalImporter v.1.2
An agent which overcomes insulin resistance by activation of the peroxisome proliferator activated receptor gamma (PPAR-gamma).[accessedResource: CHEBI:50864][accessDate: 2009-11-30]
CHEBI:50864
insulin-sensitizing drug
CHEBI:50864
Invasive Ductal Carcinoma, No Specific Type[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Invasive Ductal Carcinoma, NST[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Infiltrating Ductal Carcinoma[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Infiltrating Ductal Adenocarcinoma[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Invasive Ductal Carcinoma of Breast[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
NCIt:C4194
Infiltrating Ductal Carcinoma of the Breast[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Invasive Ductal Carcinoma, Not Otherwise Specified[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Tomasz Adamusiak
Invasive Ductal Adenocarcinoma[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
invasive ductal carcinoma
The most common type of invasive breast carcinoma, accounting for approximately 70% of breast carcinomas. The gross appearance is usually typical with an irregular stellate outline. Microscopically, randomly arranged epithelial elements are seen. When large sheets of malignant cells are present, necrosis may be seen. With adequate tissue sampling, in situ carcinoma can be demonstrated in association with the infiltrating carcinoma. The in situ component is nearly always ductal but occasionally may be lobular or both.
[Source: NCI Thesaurus C4194]
Invasive Ductal Carcinoma, NOS[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Invasive Ductal Carcinoma of the Breast[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
Infiltrating Ductal Breast Carcinoma[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Invasive Ductal Breast Carcinoma[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
Infiltrating Ductal Carcinoma of Breast[accessedResource: NCIt:C4194][accessDate: 2009-11-30]
James Malone
Extra-Adrenal Chromaffinoma[accessedResource: NCIt:C48576][accessDate: 2009-11-30]
A benign or malignant sympathetic paraganglioma arising from paraganglia outside the adrenal gland. Clinical symptoms are related to secretion of catecholamines. Representative examples include the superior and inferior paraaortic and bladder paragangliomas.
[Source: NCI Thesaurus C48576]
NCIt:C48576
extra-adrenal sympathetic paraganglioma
Extraadrenal Pheochromocytoma[accessedResource: NCIt:C48576][accessDate: 2009-11-30]
Extra-Adrenal Chromaffin Neoplasm[accessedResource: NCIt:C48576][accessDate: 2009-11-30]
Extra-Adrenal Pheochromocytoma[accessedResource: NCIt:C48576][accessDate: 2009-11-30]
Extra-Adrenal Sympathetic Paraganglionic Neoplasm[accessedResource: NCIt:C48576][accessDate: 2009-11-30]
BioportalImporter v.1.2
Cerebellum[accessedResource: NCIt:C22609][accessDate: 2009-11-30]
CNS - Brain - Cerebellum (MMHCC)[accessedResource: NCIt:C22609][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
true
obsolete_CNS brain cerebellum MMHCC
Obsolete: No longer required in EFO
NCIt:C22609
true
obsolete_cell factor
James Malone
1.8
class no longer needed for organizational purposes. Also hard to decide what an instance of a cell factor is.
C57BL6
JAX:000664
1.8
James Malone
obsolete_C57BL/6J
Duplicate use EFO_0000605
true
A/J is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/000664.html
anterior spiracle specific anlage
FBbt:00005487
James Malone
CL:0000815
regulatory T-lymphocyte[accessedResource: CL:0000815][accessDate: 2009-11-30]
James Malone
pancreatic T regulatory cell
regulatory T-cell
A T cell which regulates overall immune responses as well as the responses of other T cell subsets through direct cell-cell contact and cytokine release.[accessedResource: CL:0000815][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
BioportalImporter v.1.2
brown fat cell
A cell from the thermogenic form of adipose tissue found in newborns of many species, including humans, and in hibernating mammals. Brown fat is capable of rapid liberation of energy and seems to be important in the maintenance of body temperature immediately after birth and upon waking from hibernation.[accessedResource: CL:0000449][accessDate: 2009-11-30]
CL:0000449
Blood plasma is a yellow liquid component of blood, in which the blood cells in whole blood would normally be suspended.
BTO:0000131
BioportalImporter v.1.2
The fluid portion of the blood in which the particulate components are suspended.[accessedResource: BTO:0000131][accessDate: 2009-11-30]
blood plasma
James Malone
BTO:0000131
An experiment where an antigen array is used (antigens deposited on the array) to detect, quantify or otherwise analyse antibodies in solution.
ArrayExpress production team
antigen profiling
James Malone
James Malone
Ele Holloway
SW620
CS57848
CS57848 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158872&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158872&type=germplasm
James Malone
androgen
CHEBI:50113
James Malone
BioportalImporter v.1.2
A steroid hormone that stimulates or controls the development and maintenance of masculine characteristics in vertebrates by binding to androgen receptors.[accessedResource: CHEBI:50113][accessDate: 2009-11-30]
diaphragm
James Malone
EV:0100376
The thin muscle below the lungs and heart that separates the chest from the abdomen.[accessedResource: BTO:0000341][accessDate: 2009-11-30]
FMAID:13295
BTO:0000341
EMAPA:17701
EHDAA:4104
Thoracic diaphragm[accessedResource: FMAID:13295][accessDate: 2009-11-30]
MAT:0000502
BioportalImporter v.1.2
future diaphragm[accessedResource: MAT:0000502][accessDate: 2009-11-30]
BioportalImporter v.1.2
A glycosyl glycoside that has formula C12H22O11.[accessedResource: CHEBI:17992][accessDate: 2009-11-30]
sucrose
beta-D-fructofuranosyl alpha-D-glucopyranoside[accessedResource: CHEBI:17992][accessDate: 2009-11-30]
CHEBI:17992
NCIt:C16731
NIFSTD:birnlex_429
NIFSTD:birnlex_699
BioportalImporter v.1.2
Tomasz Adamusiak
NEWBORN (0-27 DAYS)[accessedResource: NCIt:C16731][accessDate: 2009-11-30]
Newborn[accessedResource: NCIt:C16731][accessDate: 2009-11-30]
Neonatal[accessedResource: NCIt:C16731][accessDate: 2009-11-30]
neonate
An infant during the first month after birth.[accessedResource: NCIt:C16731][accessDate: 2009-11-30]
James Malone
UO:0000126
James Malone
BioportalImporter v.1.2
A dervied temperature unit is a derived unit which represents a standard measurement of temperature in a particular temperature scale.
A derived unit which represents a standard measurement of temperature in a particular temperature scale.[accessedResource: UO:0000126][accessDate: 2009-11-30]
derived temperature unit
Spondylarthropathies[accessedResource: DOID:1123][accessDate: 2009-11-30]
spondyloarthropathy
ICD9:721.90
DOID:1123
GeneRIF:12115249
GeneRIF:15146432
Spondarthropathy[accessedResource: DOID:1123][accessDate: 2009-11-30]
Spondyloarthropathy (disorder)[accessedResource: DOID:1123][accessDate: 2009-11-30]
BioportalImporter v.1.2
Heterogeneous group of arthritic diseases sharing clinical and radiologic features. They are associated with the HLA-B27 ANTIGEN and some with a triggering infection. Most involve the axial joints in the SPINE, particularly the SACROILIAC JOINT, but can also involve asymmetric peripheral joints. Subsets include ANKYLOSING SPONDYLITIS; REACTIVE ARTHRITIS; PSORIATIC ARTHRITIS; and others.[accessedResource: MSH:D025242][accessDate: 2009-11-30]
GeneRIF:14558097
James Malone
SNOMEDCT:8847002
ICD9:719.98
MSH:D025242
Spondylarthrosis NOS[accessedResource: DOID:1123][accessDate: 2009-11-30]
SNOMEDCT:372109003
NCIt:C0152309
FMA:61905
superior temporal gyrus
James Malone
BioportalImporter v.1.2
James Malone
Ele Holloway
HT1080
NCIt:C9087
BTO:0002071
James Malone
BioportalImporter v.1.2
Kaposi's sarcoma cell
A multicentric, malignant neoplastic vascular proliferation characterized by bluish-red cutaneous nodules, usually on the legs, toes, or feet, that slowly increase in size and number and spread to more proximal sites. The tumors have endothelium-lined channels and vascular spaces mixed with aggregates of spindle-shaped cells; they may remain confined to skin and subcutaneous tissue, but widespread visceral involvement may occur.[accessedResource: BTO:0002071][accessDate: 2009-11-30]
A malignant neoplasm characterized by a vascular proliferation which usually contains blunt endothelial cells. Erythrocyte extravasation and hemosiderin deposition are frequently present. The most frequent site of involvement is the skin; however it may also occur internally. It generally develops in people with compromised immune systems including those with acquired immune deficiency syndrome (AIDS).
[Source: NCI Thesaurus C9087]
http://www.informatics.jax.org/external/festing/rat/docs/BN.shtml
common rat
Rattus norvegicus, commonly Brown or Norway rat, is a rat strain as described in http://www.informatics.jax.org/external/festing/rat/docs/BN.shtml
NCITaxon:10116
brown rat
James Malone
BN
Rattus norvegicus
erythroblast
CL:0000765
A nucleated precursor of an erythrocyte.[accessedResource: CL:0000765][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
normoblast[accessedResource: CL:0000765][accessDate: 2009-11-30]
NIFSTD:birnlex_2110
Jie Zheng
antibody
An antibody function (or antigen binding function) is an infection-fighting protein molecule in blood or secretory fluids that tags, neutralizes, and helps destroy pathogenic microorganisms such as bacteria, viruses and toxins.
James Malone
MO_833
Tomasz Adamusiak
An elongated gray mass of the neostriatum located adjacent to the lateral ventricle of the brain. (MeSH)
[Source: NCI Thesaurus C12451]
NCIt:C12451
obsolete_caudate nucleus
Nucleus Caudatus[accessedResource: NCIt:C12451][accessDate: 2009-11-30]
BioportalImporter v.1.2
Caudate Nucleus[accessedResource: NCIt:C12451][accessDate: 2009-11-30]
Duplicated term, use EFO_0000907
true
http://jaxmice.jax.org/strain/001137.html
NIFSTD:birnlex_152
Tomasz Adamusiak
James Malone
129P1/ReJ
NCIt:C34111
James Malone
BioportalImporter v.1.2
basal plate
proteomic profiling
ArrayExpress production team
James Malone
An experiment where proteins in a sample are detected, quantified or otherwise analysed, e.g. antibody profiling
Antibody profiling experiment
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158874&type=germplasm
CS57850
CS57850 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158874&type=germplasm
James Malone
Mus spretus
Algerian Mouse
NCITaxon:10096
SW684
James Malone
Ele Holloway
James Malone
WI38
BioportalImporter v.1.2
precentral gyrus
James Malone
Prerolandic gyrus[accessedResource: FMA:61894][accessDate: 2009-11-30]
Precentral convolution[accessedResource: FMA:61894][accessDate: 2009-11-30]
FMA:61894
NCIt:C33393
spiracle
TGMA:0000578
In its simplest form, the aperture or opening into a trachea (primary tracheal orifice); in most insects, sunken below the surface of the integument (secondary orifice) thus comprising a chamber, the spiracular atrium, and the external opening into this chamber, the spiracular opening.[accessedResource: TGMA:0000578][accessDate: 2009-11-30]
spiracular gland[accessedResource: MAT:0000208][accessDate: 2009-11-30]
BioportalImporter v.1.2
The mostly slit-like opening on the body surface of the insects through which air is taken into the respiratory system.[accessedResource: FBbt:00005054][accessDate: 2009-11-30]
FBbt:00005054
TADS:0000524
MAT:0000208
James Malone
CHEBI:9288
streptozocin[accessedResource: CHEBI:9288][accessDate: 2009-11-30]
A N-acylglucosamine that has formula C8H15N3O7.[accessedResource: CHEBI:9288][accessDate: 2009-11-30]
2-deoxy-2-{[methyl(nitroso)carbamoyl]amino}-alpha-D-glucopyranose[accessedResource: CHEBI:9288][accessDate: 2009-11-30]
James Malone
streptozotocin
BioportalImporter v.1.2
James Malone
BioportalImporter v.1.2
3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N,N-dimethylpropan-1-amine[accessedResource: CHEBI:2666][accessDate: 2009-11-30]
A tricyclic antidepressant that has formula C20H23N.[accessedResource: CHEBI:2666][accessDate: 2009-11-30]
CHEBI:2666
amitriptyline
James Malone
BioportalImporter v.1.2
BTO:0001325
superior cervical ganglion
The uppermost ganglion on the sympathetic trunk, lying behind the internal carotid artery and in front of the second and third cervical vertebrae; it gives rise to postganglionic fibers to the heart via cervical cardiac nerves, to the pharyngeal plexus and thence to the larynx and pharynx, and to the head via the external and internal carotid plexuses.[accessedResource: BTO:0001325][accessDate: 2009-11-30]
Malignant Epidermoid Cell Neoplasm[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:12452003
GeneRIF:15001836
GeneRIF:12168821
GeneRIF:15363037
GeneRIF:15920558
GeneRIF:14555508
GeneRIF:12860293
GeneRIF:14985402
GeneRIF:15180941
epidermoid carcinoma[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:15830715
GeneRIF:15811118
GeneRIF:12190814
Squamous Cell Cancer[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:13679863
GeneRIF:12413951
GeneRIF:14961580
GeneRIF:12722480
GeneRIF:11875739
GeneRIF:14760079
GeneRIF:15252855
GeneRIF:12926130
GeneRIF:14707456
GeneRIF:14734465
GeneRIF:16201750
GeneRIF:15754018
GeneRIF:14676802
GeneRIF:15568401
GeneRIF:15740587
GeneRIF:15579456
GeneRIF:14871981
GeneRIF:15756447
GeneRIF:14708636
GeneRIF:15870689
Squamous Carcinoma[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:12174888
GeneRIF:12115476
GeneRIF:15094779
GeneRIF:15585623
NCIt:C8999
GeneRIF:15197677
GeneRIF:15878916
GeneRIF:15625067
GeneRIF:12958179
GeneRIF:15184245
A carcinoma derived from stratified squamous epithelium. It may also occur in sites where glandular or columnar epithelium is normally present. (From Stedman, 25th ed)[accessedResource: MSH:D002294][accessDate: 2009-11-30]
GeneRIF:15365571
GeneRIF:12194986
GeneRIF:15205458
GeneRIF:12632084
GeneRIF:12823440
GeneRIF:12174890
GeneRIF:15254682
GeneRIF:12668285
GeneRIF:12879021
GeneRIF:12429789
Epidermoid Cell Cancer[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:15170282
GeneRIF:12112307
GeneRIF:14981906
GeneRIF:14719077
GeneRIF:15059221
GeneRIF:15609307
SNOMEDCT:402815007
GeneRIF:12169394
GeneRIF:15551738
GeneRIF:11779227
GeneRIF:11788901
GeneRIF:12447480
GeneRIF:15184269
GeneRIF:12115490
GeneRIF:15767556
GeneRIF:11959846
GeneRIF:15200479
GeneRIF:12579289
GeneRIF:16024014
James Malone
GeneRIF:12787042
GeneRIF:15375751
GeneRIF:15832405
GeneRIF:14981901
GeneRIF:12579497
GeneRIF:12474056
GeneRIF:12408753
GeneRIF:14607337
GeneRIF:16327980
GeneRIF:12748469
GeneRIF:16091114
GeneRIF:12700631
BioportalImporter v.1.2
SNOMEDCT:28899001
GeneRIF:12824922
GeneRIF:15073598
GeneRIF:15567470
GeneRIF:12878090
GeneRIF:12929940
GeneRIF:16142392
GeneRIF:15817070
GeneRIF:12029498
GeneRIF:11956617
GeneRIF:15492752
Squamous cell carcinoma (morphologic abnormality)[accessedResource: DOID:1749][accessDate: 2009-11-30]
GeneRIF:12841867
GeneRIF:12372346
GeneRIF:12676577
Malignant Epidermoid Cell Tumor[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:14767526
GeneRIF:15033492
Malignant Squamous Cell Neoplasm[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:15331608
GeneRIF:15930346
MSH:D002294
GeneRIF:16035618
GeneRIF:14633701
GeneRIF:15173661
GeneRIF:12607604
GeneRIF:12269988
GeneRIF:15161058
GeneRIF:12969350
Squamous cell carcinoma (disorder)[accessedResource: DOID:1749][accessDate: 2009-11-30]
GeneRIF:14517347
GeneRIF:15329319
GeneRIF:15856454
GeneRIF:14750174
GeneRIF:11836590
GeneRIF:14604894
GeneRIF:12060398
GeneRIF:12738984
GeneRIF:11814623
GeneRIF:15254763
GeneRIF:12694349
GeneRIF:12527941
GeneRIF:12720100
GeneRIF:15061963
A carcinoma arising from squamous epithelial cells. Morphologically, it is characterized by the proliferation of atypical, often pleomorphic squamous cells. Squamous cell carcinomas are graded by the degree of cellular differentiation as well, moderately, or poorly differentiated. Well differentiated carcinomas are usually associated with keratin production and the presence of intercellular bridges between adjacent cells. Representative examples are lung squamous cell carcinoma, skin squamous cell carcinoma, and cervical squamous cell carcinoma.[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
Squamous cell carcinoma NOS (morphologic abnormality)[accessedResource: DOID:1749][accessDate: 2009-11-30]
GeneRIF:14702179
GeneRIF:15638360
GeneRIF:11957139
squamous cell carcinoma
GeneRIF:15254691
GeneRIF:15515019
GeneRIF:15201990
GeneRIF:15218300
GeneRIF:15328184
GeneRIF:15328914
GeneRIF:16211299
GeneRIF:15241500
GeneRIF:14997212
GeneRIF:16172916
GeneRIF:14676801
GeneRIF:15709189
GeneRIF:12452059
GeneRIF:11920472
GeneRIF:14993646
SNOMEDCT:189566008
GeneRIF:12565178
GeneRIF:15201986
GeneRIF:12599217
GeneRIF:12954496
GeneRIF:15526353
GeneRIF:14733907
GeneRIF:15776189
GeneRIF:15254686
GeneRIF:15390192
GeneRIF:16127291
GeneRIF:15826242
GeneRIF:15140235
GeneRIF:12851677
GeneRIF:14529662
GeneRIF:15217930
GeneRIF:15754020
GeneRIF:15774758
GeneRIF:14604896
GeneRIF:12670508
GeneRIF:12727836
NCIt:C2929
GeneRIF:11960918
Malignant Squamous Cell Tumor[accessedResource: NCIt:C2929][accessDate: 2009-11-30]
GeneRIF:15388813
GeneRIF:15943786
GeneRIF:16077964
GeneRIF:12479097
GeneRIF:11887018
GeneRIF:14567988
GeneRIF:12743035
GeneRIF:12964017
GeneRIF:15662526
GeneRIF:15151617
GeneRIF:16012760
GeneRIF:16022908
GeneRIF:12841598
GeneRIF:12792768
GeneRIF:14991744
GeneRIF:12270344
Squamous Cell Epithelioma[accessedResource: NCIt:C8999][accessDate: 2009-11-30]
GeneRIF:12681285
GeneRIF:11982752
DOID:1749
GeneRIF:15816843
Excision of the Pancreas[accessedResource: NCIt:C15294][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C15294
Jie Zheng
Pancreas Excision[accessedResource: NCIt:C15294][accessDate: 2009-11-30]
Surgical removal of part or all of the pancreas.[accessedResource: NCIt:C15294][accessDate: 2009-11-30]
Tomasz Adamusiak
pancreatectomy
A tertiary amine that has formula C26H29NO.[accessedResource: CHEBI:41774][accessDate: 2009-11-30]
James Malone
2-{4-[(1Z)-1,2-diphenylbut-1-en-1-yl]phenoxy}-N,N-dimethylethanamine[accessedResource: CHEBI:41774][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:41774
tamoxifen
James Malone
Ele Holloway
benign insulitis
acute quadriplegic myopathy
James Malone
NCI Metathesaurus: C1406910
The integument of an animal (as a fur-bearing mammal or a bird) separated from the body usually with its hair or feathers.[accessedResource: BTO:0001253][accessDate: 2009-11-30]
FMAID:7163
EV:0100152
BTO:0001253
BioportalImporter v.1.2
MFO:0003200
MAT:0000284
Skin of body[accessedResource: FMAID:7163][accessDate: 2009-11-30]
XAO:0000023
SAEL:95
EHDAA:6530
skin
EMAPA:17525
Nonparenchymatous organ that consists of the epidermis, dermis and sets of hair and nails and which surrounds the entire body. Subdivisions of the skin surround various body parts; as a whole, the skin constitutes the external layer of the body. Examples: There is only one skin.[accessedResource: FMAID:7163][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
BioportalImporter v.1.2
coronary artery disease
NCIt:C26732
CHEBI:15843
An icosa-5,8,11,14-tetraenoic acid that has formula C20H32O2.[accessedResource: CHEBI:15843][accessDate: 2009-11-30]
BioportalImporter v.1.2
arachidonic acid
(5Z,8Z,11Z,14Z)-icosa-5,8,11,14-tetraenoic acid[accessedResource: CHEBI:15843][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158871&type=germplasm
CS57847 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158871&type=germplasm
CS57847
James Malone
disease of metabolism[accessedResource: DOID:0014667][accessDate: 2009-11-30]
SNOMEDCT:267456000
GeneRIF:15246202
MSH:D008659
James Malone
BioportalImporter v.1.2
Unspecified disorder of metabolism[accessedResource: DOID:0014667][accessDate: 2009-11-30]
Metabolic Disorder[accessedResource: NCIt:C3235][accessDate: 2009-11-30]
GeneRIF:12215968
GeneRIF:14592951
SNOMEDCT:30390004
GeneRIF:12815182
ICD9:277.9
GeneRIF:12707035
metabolism disorder[accessedResource: DOID:0014667][accessDate: 2009-11-30]
disorder of metabolism NOS (disorder)[accessedResource: DOID:0014667][accessDate: 2009-11-30]
Metabolic disease (disorder)[accessedResource: DOID:0014667][accessDate: 2009-11-30]
Generic term for diseases caused by an abnormal metabolic process. It can be congenital due to inherited enzyme abnormality (METABOLISM, INBORN ERRORS) or acquired due to disease of an endocrine organ or failure of a metabolically important organ such as the liver. (Stedman, 26th ed)[accessedResource: MSH:D008659][accessDate: 2009-11-30]
GeneRIF:15677734
metabolic disease
NCIt:C3235
GeneRIF:15277400
GeneRIF:12824951
GeneRIF:12242462
GeneRIF:15231871
Metabolic disorders
SNOMEDCT:75934005
GeneRIF:12093894
GeneRIF:16018179
A congenital (due to inherited enzyme abnormality) or acquired (due to failure of a metabolic important organ) disorder resulting from an abnormal metabolic process. -- 2003[accessedResource: NCIt:C3235][accessDate: 2009-11-30]
DOID:0014667
disorder of metabolism NOS[accessedResource: DOID:0014667][accessDate: 2009-11-30]
Metabolic Diseases[accessedResource: NCIt:C3235][accessDate: 2009-11-30]
Generalized metabolic disorder (disorder)[accessedResource: DOID:0014667][accessDate: 2009-11-30]
James Malone
GM12892
C16081
urocortin II
suprachiasmatic nucleus
James Malone
Ele Holloway
true
Medial geniculate nuclei[accessedResource: FMA:62211][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
Medial geniculate body[accessedResource: FMA:62211][accessDate: 2009-11-30]
Medial geniculate complex[accessedResource: FMA:62211][accessDate: 2009-11-30]
Medial geniculate nucleus[accessedResource: FMA:62211][accessDate: 2009-11-30]
FMA:62211
1.6
obsolete_medial geniculate nucleus
Duplication: use class EFO_0001968
Tomasz Adamusiak
Jie Zheng
mouse prenatal
birnlex_484
NIFSTD:birnlex_484
reference design
Tomasz Adamusiak
MO_699
DOID:1712
GeneRIF:15311863
Aortic valve stenosis is a aortic valve disease caused by the incomplete opening of the aortic valve. The aortic valve controls the direction of blood flow from the left ventricle to the aorta. When in good working order, the aortic valve does not impede the flow of blood between these two spaces. Under some circumstances, the aortic valve becomes narrower than normal, impeding the flow of blood. This is known as aortic valve stenosis, or aortic stenosis, often abbreviated as AS.[accessedResource: DOID:1712][accessDate: 2009-11-30]
James Malone
aortic stenosis
aortic valve stenosis[accessedResource: DOID:1712][accessDate: 2009-11-30]
A pathological constriction that can occur above (supravalvular stenosis), below (subvalvular stenosis), or at the AORTIC VALVE. It is characterized by restricted outflow from the LEFT VENTRICLE into the AORTA.[accessedResource: MSH:D001024][accessDate: 2009-11-30]
Aortic valve stenosis (disorder)[accessedResource: DOID:1712][accessDate: 2009-11-30]
AS[accessedResource: DOID:1712][accessDate: 2009-11-30]
SNOMEDCT:60573004
GeneRIF:11903341
BioportalImporter v.1.2
GeneRIF:14734048
MSH:D001024
MAT:0000493
ventral
Ventral is a geometric modifier describing parts pertaining to the front or anterior of any structure, for example ventral striatum.
James Malone
ventral striatum
4-[(4-methylpiperazin-1-yl)methyl]-N-{4-methyl-3-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl}benzamide[accessedResource: CHEBI:45783][accessDate: 2009-11-30]
A N-methylpiperazine that has formula C29H31N7O.[accessedResource: CHEBI:45783][accessDate: 2009-11-30]
CHEBI:45783
James Malone
BioportalImporter v.1.2
imatinib
Tomasz Adamusiak
Jie Zheng
stomach endoderm
4alpha,10beta-bis(acetyloxy)-13alpha-[(2S,3S)-3-(benzoylamino)-2-hydroxy-3-phenylpropanoyloxy]-1,7beta-dihydroxy-9-oxo-5beta,20-epoxytax-11-en-2alpha-yl benzoate[accessedResource: CHEBI:45863][accessDate: 2009-11-30]
Antineoplastic agent isolated from the bark of the Pacific yew tree, Taxus brevifolia.[accessedResource: CHEBI:45863][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
taxol
CHEBI:45863
ZFA:0000003
adaxial cells
James Malone
ZFA:0001117
BTO:0001348
WBbt:0005741
BioportalImporter v.1.2
tail
The rear end or a process or prolongation of the rear end of the body of an animal.[accessedResource: BTO:0001348][accessDate: 2009-11-30]
EMAPA:16748
James Malone
XAO:0003026
MFO:0081020
MAT:0000094
SAEL:103
MA:0000008
One of a pair of separate or fused bodies in many insects that are sometimes closely associated with the corpora cardiaca and that secrete hormones (as juvenile hormone).[accessedResource: BTO:0000291][accessDate: 2009-11-30]
James Malone
FBbt:00001716
BTO:0000291
MAT:0000210
BioportalImporter v.1.2
FBbt:00005800
corpus allatum
A neurosecretory organ forming part of the retrocerebral complex.[accessedResource: FBbt:00005800][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
MP:0001625
myocardial hypertrophy[accessedResource: MP:0001625][accessDate: 2009-11-30]
an increase in size of the cardiac tissue, not due to increased cell number[accessedResource: MP:0001625][accessDate: 2009-11-30]
cardiac hypertrophy
BioportalImporter v.1.2
Mesothelioma, NOS[accessedResource: DOID:2645][accessDate: 2009-11-30]
Mesothelioma, unspecified (disorder)[accessedResource: DOID:2645][accessDate: 2009-11-30]
NCIt:C3234
A usually malignant and aggressive neoplasm of the mesothelium which is often associated with exposure to asbestos.[accessedResource: NCIt:C3234][accessDate: 2009-11-30]
GeneRIF:14960305
SNOMEDCT:189837000
GeneRIF:15705870
James Malone
SNOMEDCT:190110008
GeneRIF:15900580
GeneRIF:12839939
mesothelioma
GeneRIF:15334061
GeneRIF:14729617
GeneRIF:15777968
GeneRIF:14576363
DOID:2645
GeneRIF:15996160
GeneRIF:12082623
A tumor derived from mesothelial tissue (peritoneum, pleura, pericardium). It appears as broad sheets of cells, with some regions containing spindle-shaped, sarcoma-like cells and other regions showing adenomatous patterns. Pleural mesotheliomas have been linked to exposure to asbestos. (Dorland, 27th ed)[accessedResource: MSH:D008654][accessDate: 2009-11-30]
SNOMEDCT:62064005
GeneRIF:12082024
MSH:D008654
Mesothelioma, unspecified (morphologic abnormality)[accessedResource: DOID:2645][accessDate: 2009-11-30]
James Malone
CS57843
http://www.arabidopsis.org/servlets/TairObject?id=1005158867&type=germplasm
CS57843 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158867&type=germplasm
NCIt:C12669
FMAID:3734
aorta
Trunk of systemic arterial tree[accessedResource: FMAID:3734][accessDate: 2009-11-30]
BTO:0000135
Aortic[accessedResource: NCIt:C12669][accessDate: 2009-11-30]
SAEL:6
MAT:0000035
James Malone
The major arterial trunk that carries oxygenated blood from the left ventricle into the ascending aorta behind the heart, the aortic arch, through the thorax as the descending aorta and through the abdomen as the abdominal aorta; it bifurcates into the left and right common iliac arteries.
[Source: NCI Thesaurus C12669]
TAO:0000014
ZFA:0000014
BioportalImporter v.1.2
MA:0000476
TADS:0000154
EV:0100027
Trunk of aortic tree[accessedResource: FMAID:3734][accessDate: 2009-11-30]
XAO:0003010
FBbt:00003153
The great arterial trunk that carries blood from the heart to be distributed by branch arteries through the body.[accessedResource: BTO:0000135][accessDate: 2009-11-30]
James Malone
H209
supraoptic nucleus
James Malone
Ele Holloway
James Malone
lateral geniculate nucleus
Lateral geniculate body[accessedResource: FMA:62209][accessDate: 2009-11-30]
MA:0000869
Lateral geniculate complex[accessedResource: FMA:62209][accessDate: 2009-11-30]
BioportalImporter v.1.2
FMA:62209
An Islet cell is a pancreatic cell that produces and secretes hormones such as insulin and glucagon.[accessedResource: NCIt:C32885][accessDate: 2009-11-30]
NCIt:C32885
islet cell
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
Tomasz Adamusiak
MO_981
quality control testing design
Proximal is a geometric modifier describing the point at which an appendage joins the body or the point nearest to some point of origin, for example proximal tibia.
James Malone
proximal
proximal tibia
MAT:0000491
Eukaryota
Tomasz Adamusiak
James Malone
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2759
NIFSTD:birnlex_399
An urea that has formula CH4N2O2.[accessedResource: CHEBI:44423][accessDate: 2009-11-30]
BioportalImporter v.1.2
hydroxyurea
CHEBI:44423
N-hydroxyurea[accessedResource: CHEBI:44423][accessDate: 2009-11-30]
CHEBI:49798
N-(2-aminoethyl)-N'-{2-[(2-aminoethyl)amino]ethyl}ethane-1,2-diamine[accessedResource: CHEBI:49798][accessDate: 2009-11-30]
tetraethylenepentamine
A polyazaalkane that has formula C8H23N5.[accessedResource: CHEBI:49798][accessDate: 2009-11-30]
BioportalImporter v.1.2
Duct Carcinoma[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Ductal Breast Carcinoma[accessedResource: DOID:3008][accessDate: 2009-11-30]
A carcinoma arising from the ducts. While ductal carcinomas can arise at other sites, this term is universally used to refer to carcinomas of the breast. Ductal carcinomas account for about two thirds of all breast cancers. Two types of ductal carcinomas have been described: Ductal carcinoma in situ (DCIS) and invasive ductal carcinoma, not otherwise specified. The latter often spreads to the axillary lymph nodes and other anatomic sites. The two forms of ductal carcinoma often coexist.[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
ductal adenocarcinoma
Ductal Carcinoma of the Breast[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Ductal Carcinoma of Breast[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
James Malone
DOID:3008
NCIt:C4017
ductal carcinoma[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
BioportalImporter v.1.2
Duct Adenocarcinoma[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
birnlex_7072
Theiler stage 17
antirheumatic drug
CHEBI:35842
CHEBI:35842
James Malone
BioportalImporter v.1.2
A drug used to treat rheumatoid arthritis.[accessedResource: CHEBI:35842][accessDate: 2009-11-30]
adductor mandibulae complex
James Malone
ZFA:0000311
Caudal is a geometric modifier which indicates a position towards the tail.
James Malone
caudal
OntologyMappingImporter following MAT:0000257
James Malone
MO_108
scale
MAT:0000257
Jie Zheng
Tomasz Adamusiak
ZFA:0000277
James Malone
Ele Holloway
BioportalImporter v.1.2
anaplastic oligoastrocytoma
WHO grade III Mixed Glioma[accessedResource: DOID:7306][accessDate: 2009-11-30]
Anaplastic oligoastrocytoma (morphologic abnormality)[accessedResource: DOID:7306][accessDate: 2009-11-30]
DOID:7306
CS57842
James Malone
CS57842 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158866&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158866&type=germplasm
cell line cell
James Malone
Ele Holloway
CL:0000010
H720
James Malone
exocrine pancreas cell
BTO:0000028
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
Cells of the pancreas that secrete digestive enzymes, the archetypal secretory cell upon which much of the early work on the sequence of events in the secretory process was done.[accessedResource: BTO:0000028][accessDate: 2009-11-30]
A fold of skin that covers the glans of the penis.[accessedResource: BTO:0001113][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0001113
foreskin
James Malone
MO_490
self vs self design
Tomasz Adamusiak
CHEBI:16240
An inorganic peroxide that has formula H2O2.[accessedResource: CHEBI:16240][accessDate: 2009-11-30]
dioxidane[accessedResource: CHEBI:16240][accessDate: 2009-11-30]
dihydrogen peroxide[accessedResource: CHEBI:16240][accessDate: 2009-11-30]
bis(hydridooxygen)(O--O)[accessedResource: CHEBI:16240][accessDate: 2009-11-30]
hydrogen peroxide
BioportalImporter v.1.2
James Malone
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2
Bacteria
apoptotic amnioserosa
James Malone
FBbt:00005556
thiopurines
CHEBI:35666
mercaptopurines
Theiler stage 11
Tomasz Adamusiak
Jie Zheng
birnlex_7062
adenocarcinoma
A type of carcinoma derived from glandular tissue or in which tumor cells form recognizable glandular structures.
James Malone
CRISP Thesaurus 2006, Term Number 2000-0386, http://crisp.cit.nih.gov/Thesaurus/00000107.htm Date accessed: 1st Novemeber 2007
An apratoxin that has formula C45H69N5O8S.[accessedResource: CHEBI:35212][accessDate: 2009-11-30]
CHEBI:35212
BioportalImporter v.1.2
apratoxin A
7'''.1,4-anhydro(N-{3-[2-(3,7-dihydroxy-5,8,8-trimethylnonan-2-yl)-4,5-dihydro-1,3-thiazol-4-yl]-2-methylpropenoyl}-O-methyl-L-tyrosyl-N-methyl-L-alanyl-N-methyl-L-isoleucyl-L-proline)[accessedResource: CHEBI:35212][accessDate: 2009-11-30]
caudal fin
ZFA:0001058
James Malone
anaplastic oligodendroglioma
James Malone
Ele Holloway
BioportalImporter v.1.2
DOID:7154
Undifferentiated Oligodendroglioma[accessedResource: DOID:7154][accessDate: 2009-11-30]
Oligodendroglioma, anaplastic (morphologic abnormality)[accessedResource: DOID:7154][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158864&type=germplasm
James Malone
CS57840 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158864&type=germplasm
CS57840
One of the repeated divisions of the whole organism.[accessedResource: FBbt:00000003][accessDate: 2009-11-30]
MAT:0000271
BioportalImporter v.1.2
adult segment
FBbt:00000003
James Malone
nestin positive islet-derived progenitor cell
PMID: 11246871
Tomasz Adamusiak
Jie Zheng
replicate design
Tomasz Adamusiak
MO_885
HBL100
James Malone
Hexadecanoic acid
BioportalImporter v.1.2
palmitic acid[accessedResource: CHEBI:15756][accessDate: 2009-11-30]
CHEBI:15756
A straight-chain saturated fatty acid that has formula C16H32O2.[accessedResource: CHEBI:15756][accessDate: 2009-11-30]
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_2157
James Malone
Archaea
BTO:0000034
A group of cells at the tip of the stem and root that give rise by cell division to the primary tissues and are ultimately responsible for the structural organization of the entire primary plant body.[accessedResource: BTO:0000034][accessDate: 2009-11-30]
apical meristem
James Malone
BioportalImporter v.1.2
BioportalImporter v.1.2
Carcinoma of the Prostate[accessedResource: NCIt:C4863][accessDate: 2009-11-30]
Cancer of the Prostate[accessedResource: NCIt:C4863][accessDate: 2009-11-30]
Cancer of Prostate[accessedResource: NCIt:C4863][accessDate: 2009-11-30]
DOID:10286
Tomasz Adamusiak
prostate carcinoma
Carcinoma of Prostate[accessedResource: NCIt:C4863][accessDate: 2009-11-30]
NCIt:C4863
One of the most common malignant tumors afflicting men. The majority of carcinomas arise in the peripheral zone and a minority occur in the central or the transitional zone of the prostate gland. Grossly, prostatic carcinomas appear as ill-defined yellow areas of discoloration in the prostate gland lobes. Adenocarcinomas represent the overwhelming majority of prostatic carcinomas. Prostatic-specific antigen (PSA) serum test is widely used as a screening test for the early detection of prostatic carcinoma. Treatment options include radical prostatectomy, radiation therapy, androgen ablation and cryotherapy. Watchful waiting or surveillance alone is an option for older patients with low-grade or low-stage disease. -- 2002[accessedResource: NCIt:C4863][accessDate: 2009-11-30]
Prostate Cancer[accessedResource: NCIt:C4863][accessDate: 2009-11-30]
James Malone
James Malone
Ele Holloway
BioportalImporter v.1.2
CL:0000080
circulating cell
A cell which moves among different tissues of the body, via blood, lymph, or other medium.[accessedResource: CL:0000080][accessDate: 2009-11-30]
DOID:28
Unspecified endocrine disorder
endocrine system disease
Non-Neoplastic Endocrine Disorder[accessedResource: NCIt:C27565][accessDate: 2009-11-30]
SNOMEDCT:84452004
Endocrine Disease[accessedResource: NCIt:C3009][accessDate: 2009-11-30]
Disorder of endocrine gland
ICD9:259.9
Endocrine Disorder[accessedResource: NCIt:C3009][accessDate: 2009-11-30]
BioportalImporter v.1.2
MSH:D004700
Any deviation from the normal structure or function of the endocrine system that is manifested by a characteristic set of symptoms and signs.
[Source: NCI Thesaurus C3009]
GeneRIF:15132716
Endocrine gland disease NOS
NCIt:C3009
Endocrine disturbance NOS
Disorder of endocrine system
Hormone disturbance NOS
Pathological processes of the ENDOCRINE GLANDS, and diseases resulting from abnormal level of available HORMONES.[accessedResource: MSH:D004700][accessDate: 2009-11-30]
SNOMEDCT:362969004
James Malone
NCIt:C27565
Endocrine Diseases and Manifestations[accessedResource: NCIt:C3009][accessDate: 2009-11-30]
SNOMEDCT:190594008
Hormone disorders
SNOMEDCT:267475005
Endocrine diseases
GeneRIF:15736104
Endocrinopathy, NOS
Endocrine Disorders[accessedResource: NCIt:C3009][accessDate: 2009-11-30]
SNOMEDCT:267489000
GeneRIF:15296474
GeneRIF:15240634
James Malone
Ele Holloway
osteoarthritis
HP:0002758
EV:0400132
ZFA:0001198
James Malone
adenohypophyseal placode
SAEL:112
MAT:0000296
trunk
BioportalImporter v.1.2
Tomasz Adamusiak
James Malone
NIFSTD:sao1078172392
FMAID:7181
1: The human or animal body apart from the head and appendages.n2: The thorax of an insect.[accessedResource: BTO:0001493][accessDate: 2009-11-30]
MFO:0001720
XAO:0003025
TAO:0001115
BTO:0001493
Torso[accessedResource: FMAID:7181][accessDate: 2009-11-30]
Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the ribcage, thoracic and lumbar vertebral column, sacrum and coccyx, it is partially surrounded by skin of trunk. Examples: There is only one trunk.[accessedResource: FMAID:7181][accessDate: 2009-11-30]
BioportalImporter v.1.2
A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.[accessedResource: UO:0000013][accessDate: 2009-11-30]
mole
A mole is a substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.
mol[accessedResource: UO:0000013][accessDate: 2009-11-30]
James Malone
UO:0000013
Tomasz Adamusiak
MO_998
Jie Zheng
An experiment in which one or more metabolites are analysed.
ArrayExpress production team
James Malone
metabolomic profiling
metabolimic profiling
FMA:77536
James Malone
inferior parietal lobule
conjunctiva
BioportalImporter v.1.2
James Malone
A thin, transparent tissue divided into the palpebral conjunctiva (covering the inner side of the eye lid) and the bulbar conjunctiva (covering the eyeball).[accessedResource: NCIt:C12341][accessDate: 2009-11-30]
NCIt:C12341
Theiler stage 22
birnlex_7077
Tomasz Adamusiak
Jie Zheng
NOD mouse
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
NCIt:C37417
NOD[accessedResource: NCIt:C37417][accessDate: 2009-11-30]
Tomasz Adamusiak
MO_887
time series design
James Malone
posterior cingulate cortex
HC toxin
CHEBI:48028
James Malone
HCC1007
An event that has caused the permanent cessation of all vital functions; the end of life. Can be applied to a whole organism or to a part of an organism.
James Malone
event death
BTO:0001143
pupa
GeneRIF:15692064
GeneRIF:11872084
GeneRIF:12682635
GeneRIF:12459170
GeneRIF:12239172
GeneRIF:15534117
GeneRIF:15070697
GeneRIF:12070027
GeneRIF:15479729
GeneRIF:15475450
GeneRIF:15920166
GeneRIF:11840273
GeneRIF:15070700
James Malone
GeneRIF:15172968
GeneRIF:11940485
GeneRIF:15657357
GeneRIF:15692072
NCIt:C3242
GeneRIF:15199411
SNOMEDCT:55921005
BioportalImporter v.1.2
GeneRIF:11830493
GeneRIF:12433679
GeneRIF:12931219
GeneRIF:15041705
GeneRIF:12433678
GeneRIF:15070695
GeneRIF:11902142
GeneRIF:14512299
GeneRIF:15203873
GeneRIF:15471949
GeneRIF:12517814
GeneRIF:12368157
GeneRIF:15512823
GeneRIF:12660820
ICD9:203.00
SNOMEDCT:109989006
GeneRIF:15902294
GeneRIF:12430875
GeneRIF:15940250
GeneRIF:12200397
GeneRIF:14656874
GeneRIF:11877294
GeneRIF:14671622
GeneRIF:12351414
GeneRIF:12161360
GeneRIF:12200385
GeneRIF:14715624
GeneRIF:12560229
GeneRIF:11985783
GeneRIF:11877293
GeneRIF:12199782
GeneRIF:15626731
GeneRIF:11877296
GeneRIF:15899516
GeneRIF:12855565
GeneRIF:11830480
GeneRIF:16026644
GeneRIF:12576455
GeneRIF:14513045
GeneRIF:15677557
GeneRIF:11568006
GeneRIF:12231535
GeneRIF:15010462
GeneRIF:12001122
GeneRIF:11896542
GeneRIF:12543106
GeneRIF:14692531
GeneRIF:11918087
GeneRIF:16091744
GeneRIF:12743296
GeneRIF:16030194
GeneRIF:16002735
GeneRIF:12969979
GeneRIF:14755377
ICD9:203.0
GeneRIF:15731173
GeneRIF:15788896
GeneRIF:15735670
GeneRIF:12604407
GeneRIF:12377412
A bone marrow-based plasma cell neoplasm characterized by a serum monoclonal protein and skeletal destruction with osteolytic lesions, pathological fractures, bone pain, hypercalcemia, and anemia. Clinical variants include non-secretory myeloma, smoldering myeloma, indolent myeloma, and plasma cell leukemia. (WHO, 2001)
[Source: NCI Thesaurus C3242]
GeneRIF:15878977
GeneRIF:15205949
GeneRIF:11792572
GeneRIF:12845688
GeneRIF:14677065
GeneRIF:12651942
GeneRIF:11745168
GeneRIF:14514474
GeneRIF:15583754
GeneRIF:12707028
DOID:9538
GeneRIF:12569357
GeneRIF:15003892
GeneRIF:15061198
GeneRIF:12393489
GeneRIF:15933061
GeneRIF:12070032
Plasma Cell Myeloma[accessedResource: NCIt:C3242][accessDate: 2009-11-30]
GeneRIF:15458509
GeneRIF:12665525
GeneRIF:11830495
GeneRIF:12456503
GeneRIF:15753365
GeneRIF:14976049
GeneRIF:12574959
GeneRIF:15000866
GeneRIF:12626569
GeneRIF:12471202
GeneRIF:15725479
myeloma[accessedResource: NCIt:C3242][accessDate: 2009-11-30]
GeneRIF:15671442
GeneRIF:11839670
GeneRIF:12393542
GeneRIF:12888915
GeneRIF:14513053
GeneRIF:15215163
GeneRIF:12649140
GeneRIF:12970749
GeneRIF:12791655
GeneRIF:15731178
GeneRIF:16044163
GeneRIF:15705883
GeneRIF:15138161
multiple myeloma
GeneRIF:12002771
GeneRIF:11877256
GeneRIF:14592826
BTO:0000420
NIFSTD:sao1642908940
Tomasz Adamusiak
Neck (volume)[accessedResource: FMAID:7155][accessDate: 2009-11-30]
James Malone
SAEL:70
FMAID:7155
EV:0100476
Subdivision of body proper, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the cervical vertebral coumn, it is partially surrounded by skin of neck. Examples: There is only one neck.[accessedResource: FMAID:7155][accessDate: 2009-11-30]
The part of an animal that connects the head with the body.[accessedResource: BTO:0000420][accessDate: 2009-11-30]
BioportalImporter v.1.2
The membranous tube that attaches the thorax to the margins of the occipital foramen.[accessedResource: TGMA:0000005][accessDate: 2009-11-30]
TGMA:0000005
MAT:0000297
neck
ArrayExpress production team
An experiment in which a microRNA array is used to analyse the microRNA component of the transcriptome.
James Malone
microRNA profiling
ovarian adenoma benign
James Malone
Ele Holloway
The part of the alimentary canal derived from the endoderm.[accessedResource: FBbt:00005383][accessDate: 2009-11-30]
The middle part of an alimentary canal.[accessedResource: BTO:0000863][accessDate: 2009-11-30]
midgut
James Malone
BioportalImporter v.1.2
FBbt:00005383
BTO:0000863
birnlex_7076
Tomasz Adamusiak
Jie Zheng
Theiler stage 21
MO_364
James Malone
control spike calibration
A process in which a reporter that could be hybridized to an exogenously added nucleic acid or protein (spike) before or during hybridization is used as a control for data processing.
James Malone
HCC1143
James Malone
array design
An instrument design which describes the design of the array.
HP:0001952
Tomasz Adamusiak
Jie Zheng
abnormal glucose tolerance
primary motor cortex
somatomotor cortex
James Malone
Ele Holloway
NCIH295R
James Malone
Ele Holloway
2-bromo-2-chloro-1,1,1-trifluoroethane[accessedResource: CHEBI:5615][accessDate: 2009-11-30]
CHEBI:5615
James Malone
BioportalImporter v.1.2
halothane
A haloalkane that has formula C2HBrClF3.[accessedResource: CHEBI:5615][accessDate: 2009-11-30]
software variation design
Tomasz Adamusiak
MO_643
floral transition
TAO:0001114
Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with the skull, it is partially surrounded by skin of head. Examples: There is only one head.[accessedResource: FMAID:7154][accessDate: 2009-11-30]
EV:0100475
The anterior section (tagma) of the insect body bearing the compound eyes, antennae and mouthparts; separated from the thorax by the cervix.[accessedResource: TGMA:0000002][accessDate: 2009-11-30]
Head (volume)[accessedResource: FMAID:7154][accessDate: 2009-11-30]
WBbt:0005739
MAT:0000294
The upper or anterior division of the animal body that contains the brain, the chief sense organs, and the mouth.[accessedResource: BTO:0000282][accessDate: 2009-11-30]
FBbt:00000004
XAO:0003024
NIFSTD:birnlex_1230
MFO:0001660
Tomasz Adamusiak
BioportalImporter v.1.2
BTO:0000282
James Malone
TGMA:0000002
FMAID:7154
head
SAEL:46
UO:0000046
derived unit
A unit which is derived from base units.[accessedResource: UO:0000046][accessDate: 2009-11-30]
A derived unit is a unit which is derived from base units.
James Malone
BioportalImporter v.1.2
Serous microcystic adenoma[accessedResource: DOID:2631][accessDate: 2009-11-30]
DOID:2631
Serous Cystoma[accessedResource: DOID:2631][accessDate: 2009-11-30]
serous cystadenoma
James Malone
Ele Holloway
Serous cystadenoma NOS (morphologic abnormality)[accessedResource: DOID:2631][accessDate: 2009-11-30]
BioportalImporter v.1.2
true
GeneRIF:14550470
Renal Clear Cell Adenocarcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
BioportalImporter v.1.2
Conventional Renal cell Carcinoma[accessedResource: DOID:4467][accessDate: 2009-11-30]
Conventional (Clear cell) Renal cell Carcinoma[accessedResource: DOID:4467][accessDate: 2009-11-30]
MSH:D002292
GeneRIF:15062033
Clear Cell Renal Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
James Malone
Grawitz Tumor[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Renal Clear Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
GeneRIF:12576453
Hypernephroma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Adenocarcinoma of the Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Conventional (Clear Cell) Renal Cell Adenocarcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Adenocarcinoma, Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.[accessedResource: MSH:D002292][accessDate: 2009-11-30]
SNOMEDCT:254915003
Kidney Clear Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
NCIt:C4033
DOID:4467
Clear Cell Adenocarcinoma of Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear cell carcinoma of kidney[accessedResource: DOID:4467][accessDate: 2009-11-30]
Clear cell carcinoma of kidney is a renal cell carcinoma described as the most common type of renal cell carcinoma. The cancerous cells appear very pale or clear when examined under microscope. This cancer can be effectively treated with surgery if the tumor is confined to the kidney.[accessedResource: DOID:4467][accessDate: 2009-11-30]
GeneRIF:15709172
1.8
Clear cell carcinoma of kidney (disorder)[accessedResource: DOID:4467][accessDate: 2009-11-30]
duplicate of clear cell adenocarcinoma EFO_0000348
A malignant epithelial neoplasm of the kidney characterized by the presence of lipid-containing clear cells within a vascular network. The tumor may metastasize to unusual sites and late metastasis is common.[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Carcinoma of the Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
obsolete_conventional clear cell renal carcinoma
Tomasz Adamusiak
Jie Zheng
Theiler stage 26
birnlex_7081
James Malone
genotyping
ArrayExpress production team
An experiment in which variation in the genome is analysed
endoderm
Tomasz Adamusiak
Jie Zheng
FMAID:69071
medial meniscus
medial
Medial is a geometric modifier describing something which is pertaining to, in or toward the middle, for example medial meniscus.
James Malone
MAT:0000490
event free survival time
James Malone
CGTHW1
James Malone
Ele Holloway
3rd instar larva
stamen abscission zone
The area of the plant from where the stamen is shed.
James Malone
A pair of salivary glands is present in the thorax, just above the forelegs and flanking the oesophagus. In both sexes of most species each gland normally consists of three lobes, two lateral and one median.[accessedResource: TGMA:0001804][accessDate: 2009-11-30]
FMAID:9597
TGMA:0001804
salivary gland
EHDAA:7987
James Malone
BTO:0001203
TADS:0000119
SAEL:92
MAT:0000079
FBbt:00005382
Lobular organ the parenchyma of which consists of glandular acini which communicate the oral cavity. Examples: parotid gland, sublingual gland, lingual salivary gland.[accessedResource: FMAID:9597][accessDate: 2009-11-30]
The glands of the oral cavity whose combined secretion constitutes the saliva.[accessedResource: BTO:0001203][accessDate: 2009-11-30]
EMAPA:17751
MA:0000346
BioportalImporter v.1.2
ArrayExpress production team
methylation profiling
An experiment in which the methylation state is determined and is compared between samples.
James Malone
Methylation specific oligonucleotide microarray
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
Ele Holloway
multiple system atrophy
DOID:4752
NIFSTD:birnlex_12573
Multiple system atrophy (disorder)[accessedResource: DOID:4752][accessDate: 2009-11-30]
MO_572
UO:0000014
candela
A candela is a luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.
cd[accessedResource: UO:0000014][accessDate: 2009-11-30]
Jie Zheng
James Malone
BioportalImporter v.1.2
A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.[accessedResource: UO:0000014][accessDate: 2009-11-30]
Tomasz Adamusiak
SAEL:106
Any blade with a few short branches arising apically or subapically.[accessedResource: TGMA:000136][accessDate: 2009-11-30]
MAT:0000295
The main middle section of the insect body comprising three thoracic rings, the pro-, the meso- and the metathoraces which are more or less well fused and cask-like sometimes having on the upper lateral part one of two pairs of wings, while on the ventrolateral part each thoracic ring bears a pair of legs.[accessedResource: FBbt:00000015][accessDate: 2009-11-30]
Chest[accessedResource: FMAID:9576][accessDate: 2009-11-30]
BTO:0001368
1: The part of the mammalian body between the neck and the abdomen; also: its cavity in which the heart and lungs lie.n2: The middle of the three chief divisions of the body of an insect; also: the corresponding part of a crustacean or an arachnid.[accessedResource: BTO:0001368][accessDate: 2009-11-30]
thorax
EV:0100010
James Malone
FMAID:9576
TGMA:000136
FBbt:00000015
A small, slender, rigid, needle- or thornlike spicule.[accessedResource: http://rest.bioontology.org/bioportal/virtual/1030/TGMA:0001364][accessDate: 2009-08-26]
BioportalImporter v.1.2
Subdivision of trunk proper, which is demarcated from the neck by the plane of the superior thoracic aperture and from the abdomen internally by the inferior surface of the diaphragm and externally by the costal margin and associated with the thoracic vertebral column and ribcage and from the back of the thorax by the external surface of the posterolateral part of the rib cage, the anterior surface of the thoracic vertebral column and the posterior axillary lines; together with the abdomen and the perineum, it constitutes the trunk proper. Examples: There is only one thorax.[accessedResource: FMAID:9576][accessDate: 2009-11-30]
James Malone
cornea
BTO:0000286
BioportalImporter v.1.2
The transparent part of the coat of the eyeball that covers the iris and pupil and admits light to the interior.[accessedResource: BTO:0000286][accessDate: 2009-11-30]
A dome-shaped, transparent, avascular tissue covering the front of the eye. It is composed of five layers: squamous epithelium, Bowman's membrane, stroma, Descemet's membrane, and endothelium. Refraction of light contributing to eye's focusing ability is its characteristic function. It contains unmyelinated nerve endings which are responsible for the high sensitivity of the tissue.[accessedResource: NCIt:C12342][accessDate: 2009-11-30]
NCIt:C12342
James Malone
BioportalImporter v.1.2
surfactant
CHEBI:35195
A substance which lowers the surface tension of the medium in which it is dissolved, and/or the interfacial tension with other phases, and, accordingly, is positively adsorbed at the liquid/vapour and/or at other interfaces.[accessedResource: CHEBI:35195][accessDate: 2009-11-30]
Theiler stage 24
Tomasz Adamusiak
Jie Zheng
birnlex_7079
BTO:0000497
MAT:0000343
James Malone
TAO:0000190
XAO:0000209
EMAPA:16658
EHDAA:918
ganglion
A group of nerve cell bodies located outside the central nervous system. The term is occasionally applied to certain nuclear groups within the brain or spinal cord, such as the basal ganglia.[accessedResource: BTO:0000497][accessDate: 2009-11-30]
BioportalImporter v.1.2
IDOMAL:0000296
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
plasmodium parasite stage
The distinct stages of the life cycle of a protozoon of the genus Plasmodium.[accessedResource: IDOMAL:0000296][accessDate: 2009-11-30]
CESS
James Malone
Ele Holloway
MA:0001068
James Malone
Ele Holloway
superior colliculus
James Malone
A temporal mesurement of an occurrence of a metastasis measured from some defined time point.
event distant metastases
xylose
CHEBI:18222
James Malone
Ele Holloway
CHP212
RPMI8226
James Malone
Ele Holloway
immune system disease
ICD9:279.4
James Malone
Immunodeficiency and Immunosuppression Disorders[accessedResource: NCIt:C27351][accessDate: 2009-11-30]
Immune System and Related Disorders[accessedResource: NCIt:C27351][accessDate: 2009-11-30]
SNOMEDCT:191035005
BioportalImporter v.1.2
SNOMEDCT:191019003
DOID:2914
ICD9:279.1
SNOMEDCT:191017001
ICD9:279.9
NCIt:C27351
ICD9:279
ICD9:279.19
ICD9:279.10
A group of non-neoplastic and neoplastic disorders resulting from the deregulation and/or deficiency of immune system functions. It includes autoimmune disorders (e.g., lupus erythematosus, dermatomyositis, rheumatoid arthritis), congenital and acquired immunodeficiency syndromes including the acquired immune deficiency syndrome (AIDS), and neoplasms (e.g., lymphomas and malignancies secondary to transplantation.)
[Source: NCI Thesaurus C27351]
Disorder of the immune mechanism NOS
ICD9:279.8
http://www.arabidopsis.org/servlets/TairObject?id=1005158643&type=germplasm
James Malone
CS57619 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158643&type=germplasm
CS57619
protocol
MO_214
Tomasz Adamusiak
Jie Zheng
James Malone
A protocol is an information entity which is a set of instructions that describe an how an experiment is done.
plan specification
NCIH23
James Malone
Ele Holloway
MAT:0000222
The main root of a plant, usually stouter than the lateral roots and growing straight downward from the stem.[accessedResource: BTO:0002615][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0002615
James Malone
ZEA:0015061
taproot
James Malone
Ele Holloway
ARH77
James Malone
Ele Holloway
DoTc2
James Malone
BJABK3
James Malone
NCIt:C35544
SNOMEDCT:195022006
SNOMEDCT:57809008
cardiomyopathy
SNOMEDCT:85898001
A disease of the heart muscle or myocardium proper. Cardiomyopathies may be classified as either primary or secondary, on the basis of etiology, or on the pathophysiology of the lesion: hypertrophic, dilated, or restrictive.[accessedResource: NCIt:C34830][accessDate: 2009-11-30]
SNOMEDCT:195037005
ICD9:425
ICD9:425.4
SNOMEDCT:195580005
Myocardial Disorder[accessedResource: NCIt:C35544][accessDate: 2009-11-30]
SNOMEDCT:195017006
DOID:3978
NCIt:C34830
BioportalImporter v.1.2
ICD9:425.8
antipyretic
A drug that prevents or reduces fever by lowering the body temperature from a raised state. An antipyretic will not affect the normal body temperature if one does not have fever. Antipyretics cause the hypothalamus to override an interleukin-induced increase in temperature. The body will then work to lower the temperature and the result is a reduction in fever.[accessedResource: CHEBI:35493][accessDate: 2009-11-30]
CHEBI:35493
James Malone
BioportalImporter v.1.2
CHEBI:35493
James Malone
Ele Holloway
IBL4
James Malone
BioportalImporter v.1.2
medullary thymic epithelial cell
An epithelial cell located in the inner portion of the thymus where the T lymphocytes become mature and are released into the circulation.[accessedResource: NCIt:C45702][accessDate: 2009-11-30]
NCIt:C45702
KG1
James Malone
Ele Holloway
plant embryo
MAT:0000226
ZEA:0015179
James Malone
PO:0009009
BTO:0001233
The early developmental stage that, through embryological development, ultimately becomes an adult individual. In plants, that portion of a seed that will form the growing seedling following germination; it has a radicle, apical meristem, and embryonic leaf or leaves.[accessedResource: BTO:0001233][accessDate: 2009-11-30]
BioportalImporter v.1.2
A biological agent that causes disease or illness to its host
pathogen
James Malone
EHDAA:2183
MA:0000127
James Malone
FMAID:13889
Pituitary gland[accessedResource: FMAID:13889][accessDate: 2009-11-30]
Hypophysis cerebri[accessedResource: FMAID:13889][accessDate: 2009-11-30]
BioportalImporter v.1.2
XAO:0000161
EMAPA:16724
MAT:0000077
BTO:0001073
SAEL:83
EV:0100132
A small oval endocrine organ that is attached to the infundibulum of the brain, consists of an epithelial anterior lobe joined by an intermediate part to a posterior lobe of nervous origin, and produces various internal secretions directly or indirectly impinging on most basic body functions.[accessedResource: BTO:0001073][accessDate: 2009-11-30]
ZFA:0000118
pituitary
James Malone
BFO:function
A function is an entity which is an essentially end-directed activity of a material entity in virtue of that entity being a specific kind of entity in the kind or kinds of contexts that it is made for. For example,
function
true
NCIt:C53482
influenza
An acute viral infection of the respiratory tract, occurring in isolated cases, in epidemics, or in pandemics; it is caused by serologically different strains of viruses (influenzaviruses) designated A, B, and C, has a 3-day incubation period, and usually lasts for 3 to 10 days. It is marked by inflammation of the nasal mucosa, pharynx, and conjunctiva; headache; myalgia; often fever, chills, and prostration; and occasionally involvement of the myocardium or central nervous system.[accessedResource: NCIt:C53482][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
immunoprecipitate
James Malone
The antibody used to precipitate an antigen out of a solution during the process of immunoprecipitation.
RWPE1
James Malone
Ele Holloway
A firm partly muscular partly glandular body that is situated about the base of the mammalian male urethra and secretes an alkaline viscid fluid which is a major constituent of the ejaculatory fluid.[accessedResource: BTO:0001129][accessDate: 2009-11-30]
BTO:0001129
James Malone
EV:0100104
EMAPA:19287
prostate
BioportalImporter v.1.2
MA:0000404
FMAID:9600
SAEL:87
MAT:0000078
Lobular organ the parenchyma of which has as its parts glandular acini which are continuous with the prostatic part of the urethra. Examples: There is only one prostate.[accessedResource: FMAID:9600][accessDate: 2009-11-30]
PO:0000256
James Malone
root hair
A filamentous extension of an epidermal cell near the tip of a rootlet that functions in absorption of water and minerals.nSpecialized unicellular trichome found in roots.[accessedResource: BTO:0001804][accessDate: 2009-11-30]
BTO:0001804
BioportalImporter v.1.2
MAT:0000352
CHL1
James Malone
Ele Holloway
James Malone
Ele Holloway
NCIH226
James Malone
Ele Holloway
EB1
CS57618
CS57618 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158642&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158642&type=germplasm
James Malone
James Malone
Ele Holloway
AN3CA
BL41K3
James Malone
James Malone
Ele Holloway
ITM
non-narcotic analgesic
James Malone
A drug that has principally analgesic, antipyretic and anti-inflammatory actions. Non-narcotic analgesics do not bind to opioid receptors.[accessedResource: CHEBI:35481][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:35481
CHEBI:35481
ICD9:423
GeneRIF:12195022
BioportalImporter v.1.2
GeneRIF:15855354
ICD9:429.7
GeneRIF:15302608
GeneRIF:12056504
SNOMEDCT:49601007
SNOMEDCT:194962004
ICD9:429.79
GeneRIF:15648548
GeneRIF:11744804
SNOMEDCT:195151008
GeneRIF:15363820
GeneRIF:15240653
SNOMEDCT:195594006
ICD9:459.9
GeneRIF:15653176
GeneRIF:12204797
SNOMEDCT:195150009
GeneRIF:12052841
ICD9:423.8
GeneRIF:12052142
cardiovascular disease
GeneRIF:15780820
GeneRIF:15314690
GeneRIF:14998943
GeneRIF:14967720
GeneRIF:15528465
GeneRIF:12911596
GeneRIF:11912547
GeneRIF:15166781
GeneRIF:12187094
GeneRIF:15565175
GeneRIF:12943734
Cardiovascular Diseases[accessedResource: NCIt:C2931][accessDate: 2009-11-30]
GeneRIF:15010202
NCIt:C2931
GeneRIF:15939053
GeneRIF:11821707
GeneRIF:12606536
SNOMEDCT:195646003
ICD9:429
GeneRIF:12898464
GeneRIF:15576850
GeneRIF:15257013
SNOMEDCT:195553003
SNOMEDCT:266309008
GeneRIF:15342688
GeneRIF:12867276
A body system disease which occurs in the heart, blood, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis.[accessedResource: DOID:1287][accessDate: 2009-11-30]
SNOMEDCT:266239001
SNOMEDCT:266240004
GeneRIF:15750260
GeneRIF:12365916
GeneRIF:15459608
GeneRIF:15823283
GeneRIF:15598684
GeneRIF:15340249
SNOMEDCT:195551001
GeneRIF:16018179
GeneRIF:12065317
disease of subdivision of hemolymphoid system[accessedResource: DOID:1287][accessDate: 2009-11-30]
GeneRIF:15591764
SNOMEDCT:266241000
GeneRIF:16109314
GeneRIF:11985486
GeneRIF:15856070
GeneRIF:16103519
ICD9:429.2
GeneRIF:15627719
A non-neoplastic or neoplastic disorder affecting the heart or the vessels (arteries, veins and lymph vessels). Representative examples of non-neoplastic cardiovascular disorders are endocarditis and hypertension. Representative examples of neoplastic cardiovascular disorders are endocardial myxoma and angiosarcoma. -- 2003
[Source: NCI Thesaurus C2931]
GeneRIF:12431476
GeneRIF:16046727
GeneRIF:15618240
DOID:1287
GeneRIF:15226189
GeneRIF:12476328
GeneRIF:11934214
GeneRIF:11935372
GeneRIF:15116245
ICD9:424
GeneRIF:12669427
ICD9:429.8
Cardiovascular Disorder[accessedResource: NCIt:C2931][accessDate: 2009-11-30]
GeneRIF:16159602
GeneRIF:16161810
ICD9:429.81
GeneRIF:16132053
ICD9:390-459.99
cardiovascular system disease[accessedResource: DOID:1287][accessDate: 2009-11-30]
ICD9:429.89
ICD9:420-429.99
GeneRIF:15869613
GeneRIF:15683719
GeneRIF:12690916
GeneRIF:12818409
GeneRIF:15531184
GeneRIF:16324215
circulatory system disease[accessedResource: DOID:1287][accessDate: 2009-11-30]
GeneRIF:15668644
GeneRIF:15351863
GeneRIF:15780075
GeneRIF:15735209
GeneRIF:16102632
GeneRIF:16028070
GeneRIF:11822583
GeneRIF:15619076
GeneRIF:16224057
GeneRIF:14983217
GeneRIF:15859024
Cardiovascular Disorders[accessedResource: NCIt:C2931][accessDate: 2009-11-30]
MSH:D002318
GeneRIF:12861348
GeneRIF:16260427
GeneRIF:12201209
SNOMEDCT:266251004
GeneRIF:15634270
SNOMEDCT:194901009
GeneRIF:15008790
GeneRIF:16159596
GeneRIF:15375785
SNOMEDCT:105980002
GeneRIF:12743009
GeneRIF:15282206
Pathological conditions involving the CARDIOVASCULAR SYSTEM including the HEART; the BLOOD VESSELS; or the PERICARDIUM.[accessedResource: MSH:D002318][accessDate: 2009-11-30]
James Malone
SNOMEDCT:195588003
EB2
James Malone
Ele Holloway
Infiltrating Medullary Carcinoma of Breast[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
Infiltrating Medullary Carcinoma of the Breast[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
Invasive Medullary Breast Carcinoma[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
BioportalImporter v.1.2
Invasive Medullary Carcinoma of Breast[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
An infiltrating breast carcinoma with a relatively favorable prognosis. It is an uncommon carcinoma, accounting for fewer than 1% of all infiltrating breast carcinomas. It is well circumscribed, with soft cut surface and often of considerable size. Microscopically, the predominant growth pattern is syncytial with broad anastomosing bands or sheets of malignant cells. The malignant cells are round with abundant cytoplasm and vesicular nuclei. The sheets of malignant cells are associated with a marked lymphoplasmacytic infiltrate. Glandular or tubular structures are absent.[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
Medullary Breast Carcinoma with Lymphoid Stroma[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
medullary breast carcinoma
Invasive Medullary Carcinoma of the Breast[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
Medullary Carcinoma of the Breast[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
Medullary Carcinoma of Breast[accessedResource: NCIt:C9119][accessDate: 2009-11-30]
James Malone
DOID:5605
NCIt:C9119
h minus[accessedResource: PATO:0001345][accessDate: 2009-11-30]
mating type h minus
PATO:0001345
MO_407
A S. pombe mating type determined by the mat1-Mc and mat1-Mi on the mat1 locus.[accessedResource: PATO:0001345][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
James Malone
Ele Holloway
KATOIII
FBbt:00005414
ectoderm anlage in statu nascendi
James Malone
Tests and results for pathogens infecting organism from which the biosource is derived
Tomasz Adamusiak
Jie Zheng
pathogen test
MO_184
root nodule
BioportalImporter v.1.2
BTO:0001190
James Malone
PO:0003023
Gall-like structures on the roots of legumes that contain symbiotic nitrogen-fixing bacteria.[accessedResource: BTO:0001190][accessDate: 2009-11-30]
MAT:0000353
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158645&type=germplasm
CS57621
CS57621 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158645&type=germplasm
COLO201
James Malone
Ele Holloway
NCIH2405
James Malone
Ele Holloway
Abdominopelvis[accessedResource: FMAID:9577][accessDate: 2009-11-30]
Abdominopelvic region[accessedResource: FMAID:9577][accessDate: 2009-11-30]
abdomen
EV:0100011
BTO:0000020
Subdivision of trunk proper, which is demarcated from the thorax internally by the inferior surface of the sternocostal part of the diaphragm and externally by the costal margin, from the back of abdomen by the external surface of the posterior abdominal wall, from the perineum by the superior surface of the urogenital diaphragm and from the lower limbs by the inguinal folds; together with the thorax, and perineum, it constitutes the trunk proper. Examples: There is only one abdomen.[accessedResource: FMAID:9577][accessDate: 2009-11-30]
SAEL:1
1: The part of the body between the thorax and the pelvis; also: the cavity of this part of the trunk containing the chief viscera.n2: The posterior section of the body behind the thorax in an arthropod.[accessedResource: BTO:0000020][accessDate: 2009-11-30]
The third large region of the insect body, which originally comprised twelve segments, each segment is usually formed by a dorsal tergite and a ventral sternite and carries on both sides a spiracle, sometimes, both the dorsal and the ventral plates are further subdivided to give rise to latero-tergites and latero-sternites. In the context of Drosophila refers to the most posterior of the three main tagmata or divisions of the body plan, after the head and the thorax.[accessedResource: FBbt:00000020][accessDate: 2009-11-30]
FMAID:9577
FBbt:00000020
James Malone
MAT:0000298
BioportalImporter v.1.2
The third, posterior division (tagma) of the insect body. In adult mosquitoes, consisting of ten apparent segments.[accessedResource: TGMA:0000524][accessDate: 2009-11-30]
TGMA:0000524
true
For example, the role of a person as a surgeon, the role of an artificial heart in pumping blood, the role of a chemical compound in an experiment, the role of a drug in the treatment of a disease.
BFO:role
role
A role is an entity which is borne in a material entity in some kinds of natural, social or institutional contexts, but which is not essential to the fundamental definition of that material entity (i.e. the material entity exists with or without the role). For example, the role of a person as a surgeon, the role of an artificial heart in pumping blood, the role of a chemical compound in an experiment, the role of a drug in the treatment of a disease.
James Malone
Tomasz Adamusiak
Pneumogastric Nerve[accessedResource: NCIt:C12812][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C12812
Tenth Cranial Nerve[accessedResource: NCIt:C12812][accessDate: 2009-11-30]
Jie Zheng
Cranial Nerve X[accessedResource: NCIt:C12812][accessDate: 2009-11-30]
vagus nerve
BT20
James Malone
is equivalent to an instance of class organism
obsolete_individual
true
Identifier or name of the individual organism from which the biomaterial was derived.
James Malone
Ele Holloway
Raji
EB3
James Malone
Ele Holloway
Tomasz Adamusiak
James Malone
primary myelofibrosis
CHEBI:35477
James Malone
BioportalImporter v.1.2
antimanic drug
CHEBI:35477
Antimanic drugs are agents used to treat bipolar disorders or mania associated with other affective disorders.[accessedResource: CHEBI:35477][accessDate: 2009-11-30]
megakaryocyte progenitor cell
James Malone
megacaryocyte progenitor cell[accessedResource: CL:0000553][accessDate: 2009-11-30]
megacaryoblast[accessedResource: CL:0000553][accessDate: 2009-11-30]
BioportalImporter v.1.2
CL:0000553
megakaryoblast[accessedResource: CL:0000553][accessDate: 2009-11-30]
The earliest cytologically identifiable precursor in the thrombocytic series.[accessedResource: CL:0000553][accessDate: 2009-11-30]
A large lobulated gland of vertebrates that secretes digestive enzymes and the hormones insulin and glucagon.[accessedResource: BTO:0000988][accessDate: 2009-11-30]
EMAPA:18816
pancreas
MA:0001582
Lobular organ the parenchyma of which consists of glandular acini which communicate via a duct system with the duodenum. Examples: There is only one pancreas.[accessedResource: FMAID:7198][accessDate: 2009-11-30]
EHDAA:6893
BTO:0000988
MA:0002415
SAEL:80
EV:0100092
James Malone
TAO:0000140
BioportalImporter v.1.2
MAT:0000075
ZFA:0000140
XAO:0000136
FMAID:7198
Papillary Cancer of the Thyroid Gland[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:15126572
GeneRIF:15998773
Papillary Cancer of Thyroid Gland[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:11786418
Papillary Carcinoma of the Thyroid[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:14584755
Papillary Cancer of the Thyroid[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:15803188
Thyroid Gland Papillary Carcinoma[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:12203787
GeneRIF:15709169
NCIt:C4035
GeneRIF:16007166
Papillary Carcinoma of the Thyroid Gland[accessedResource: DOID:3969][accessDate: 2009-11-30]
GeneRIF:15980887
GeneRIF:12964023
Papillary Cancer of Thyroid[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:12640681
James Malone
papillary thyroid carcinoma
Papillary carcinoma of thyroid[accessedResource: DOID:3969][accessDate: 2009-11-30]
GeneRIF:12670889
GeneRIF:15753666
GeneRIF:12819023
Papillary Thyroid Cancer[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
DOID:3969
GeneRIF:15785240
SNOMEDCT:255029007
GeneRIF:14568171
GeneRIF:15192042
GeneRIF:15968271
GeneRIF:12720532
GeneRIF:12140756
Papillary Carcinoma of Thyroid Gland[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:14534696
GeneRIF:12538453
GeneRIF:12193298
BioportalImporter v.1.2
Papillary thyroid carcinoma (disorder)[accessedResource: DOID:3969][accessDate: 2009-11-30]
GeneRIF:15716612
SNOMEDCT:4797003
GeneRIF:15785245
GeneRIF:14761598
GeneRIF:15817909
A differentiated adenocarcinoma arising from the follicular cells of the thyroid gland. It is linked to radiation exposure and is the most common malignant thyroid lesion, comprising 75% to 80% of all thyroid cancers in iodine sufficient countries. Diagnostic procedures include: thyroid function tests, thyroid radioisotope scanning, thyroid ultrasound, and fine needle biopsy. Microscopically, the diagnosis is based on the distinct characteristics of the malignant cells, which include enlargement, oval shape, elongation, and overlapping of the nuclei. The nuclei also display clearing or have a ground glass appearance. Depending on the size and spread of the disease, surgical options include lobectomy, and partial or complete thyroidectomy. Adjuvant treatment options include: radioiodine therapy, TSH suppression and external radiation.[accessedResource: NCIt:C4035][accessDate: 2009-11-30]
GeneRIF:14532972
GeneRIF:15277225
GeneRIF:14586073
GeneRIF:11994357
embryonic anal pad
James Malone
FBbt:00005748
James Malone
A thimble-shaped group of cells found at the tip of roots; it functions to protect the meristem.[accessedResource: BTO:0000039][accessDate: 2009-11-30]
BTO:0000039
PO:0020123
BioportalImporter v.1.2
MAT:0000357
root cap
periaqueductal gray
NCIH2347
James Malone
Ele Holloway
FBbt:00004864
BioportalImporter v.1.2
EMAPA:17959
James Malone
female genitalia[accessedResource: MAT:0000028][accessDate: 2009-11-30]
BTO:0000083
EV:0100110
EHDAA:8116
TADS:0000352
MA:0000381
The reproductive system in women includes the ovaries, the fallopian tubes, the uterus (womb), the cervix, and the vagina (birth canal).[accessedResource: BTO:0000083][accessDate: 2009-11-30]
female reproductive system
female genital system
ZFA:0000303
FMAID:45663
XAO:0000156
CMLT1
James Malone
Ele Holloway
James Malone
CS57620
CS57620 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158644&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158644&type=germplasm
James Malone
BT474
James Malone
Ele Holloway
SCaBER
true
The genotype of the individual organism from which the biomaterial was derived. Individual genetic characteristics include polymorphisms, disease alleles, and haplotypes.
obsolete_individual genetic characteristic
Tomasz Adamusiak
Jie Zheng
MA:0000717
cardiovascular system endothelium
DOID:9952
GeneRIF:12065898
GeneRIF:12408765
GeneRIF:15604885
GeneRIF:16138344
GeneRIF:14959847
Acute Lymphocytic Leukemias[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
Acute Lymphocytic Leukaemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
SNOMEDCT:190034000
GeneRIF:14562113
GeneRIF:15390181
James Malone
GeneRIF:12008081
GeneRIF:12091359
GeneRIF:14751048
Acute Lymphogenous Leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
GeneRIF:12203795
GeneRIF:12163057
acute lymphocytic leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
GeneRIF:16012335
GeneRIF:14613996
BioportalImporter v.1.2
Precursor Lymphoblastic Leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
GeneRIF:11964305
ALL[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
Leukemia with an acute onset, characterized by the presence of lymphoblasts in the bone marrow and the peripheral blood. It includes the precursor B lymphoblastic leukemia and precursor T lymphoblastic leukemia.
[Source: NCI Thesaurus C3167]
GeneRIF:15878620
GeneRIF:15001471
GeneRIF:14762685
Leukemia with an acute onset, characterized by the presence of lymphoblasts in the bone marrow and the peripheral blood. It includes the acute B lymphoblastic leukemia and acute T lymphoblastic leukemia.[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
GeneRIF:12958073
GeneRIF:12133444
GeneRIF:15613101
ICD9:204.00
SNOMEDCT:128822004
GeneRIF:15717687
GeneRIF:12879482
GeneRIF:15297414
SNOMEDCT:91857003
GeneRIF:12412576
GeneRIF:12532332
GeneRIF:11855781
GeneRIF:14580777
NCIt:C3167
GeneRIF:12142782
ALL - Acute Lymphocytic Leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
GeneRIF:12854903
GeneRIF:15353558
Precursor Cell Lymphoblastic Leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
GeneRIF:15618957
ICD9:204.0
GeneRIF:14706337
acute lymphoblastic leukemia
Lymphoblastic Leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
Acute Lymphoid Leukemia[accessedResource: NCIt:C3167][accessDate: 2009-11-30]
EFM19
James Malone
Ele Holloway
BTO:0000843
megalocaryocyte[accessedResource: CL:0000556][accessDate: 2009-11-30]
A giant cell 50 to 100 micron in diameter, with a greatly lobulated nucleus, found in the bone marrow; mature blood platelets are released from its cytoplasm.[accessedResource: CL:0000556][accessDate: 2009-11-30]
BioportalImporter v.1.2
megakaryocyte
James Malone
A large cell that has a lobulated nucleus, is found especially in the bone marrow, and is the source of blood platelets.[accessedResource: BTO:0000843][accessDate: 2009-11-30]
megalokaryocyte[accessedResource: CL:0000556][accessDate: 2009-11-30]
CL:0000556
megacaryocyte[accessedResource: CL:0000556][accessDate: 2009-11-30]
islet of Langerhans
Irregular microscopic structures scattered throughout the pancreas and comprising its endocrine part (the endocrine pancreas). In humans, they are composed of at least four types of cells: the alpha cells, which secrete glucagon; the beta cells, which are the most abundant and secrete insulin; the delta cells, which secrete somatostatin; and the PP cells, which secrete pancreatic polypeptide. Degeneration of the beta cells, whose secretion (insulin) is important in carbohydrate metabolism, is the major cause of type I diabetes mellitus.[accessedResource: BTO:0000991][accessDate: 2009-11-30]
BTO:0000991
James Malone
BioportalImporter v.1.2
parietal cell
CL:0000162
oxyntic cell[accessedResource: CL:0000162][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
BioportalImporter v.1.2
GeneRIF:15184910
James Malone
GeneRIF:12904596
GeneRIF:12865925
SNOMEDCT:404051002
Embryonal rhabdomyosarcoma (morphologic abnormality)[accessedResource: DOID:3246][accessDate: 2009-11-30]
MSH:D018233
embryonal rhabdomyosarcoma
GeneRIF:15024701
NCIt:C8971
GeneRIF:15475955
A poorly circumscribed morphologic variant of rhabdomyosarcoma. It is characterized by the presence of primitive skeletal muscle differentiation in any stage of myogenesis. There are three histologic types, spindle cell, botryoid and anaplastic.[accessedResource: NCIt:C8971][accessDate: 2009-11-30]
DOID:3246
SNOMEDCT:14269005
Embryonal rhabdomyosarcoma (disorder)[accessedResource: DOID:3246][accessDate: 2009-11-30]
GeneRIF:11846302
A form of RHABDOMYOSARCOMA arising primarily in the head and neck, especially the orbit, of children below the age of 10. The cells are smaller than those of other rhabdomyosarcomas and are of two basic cell types: spindle cells and round cells. This cancer is highly sensitive to chemotherapy and has a high cure rate with multi-modality therapy. (From Holland et al., Cancer Medicine, 3d ed, p2188)[accessedResource: MSH:D018233][accessDate: 2009-11-30]
KHOS240S
James Malone
Ele Holloway
mass spectrophotometer
James Malone
BioportalImporter v.1.2
An organofluorine compound that has formula C3H2ClF5O.[accessedResource: CHEBI:6015][accessDate: 2009-11-30]
CHEBI:6015
isoflurane
2-chloro-2-difluoromethoxy-1,1,1-trifluoroethane[accessedResource: CHEBI:6015][accessDate: 2009-11-30]
normalization testing design
Tomasz Adamusiak
MO_729
SEM
James Malone
Ele Holloway
COLO320HSR
James Malone
Ele Holloway
James Malone
infection
The state of being infected such as from the introduction of a foreign agent such as serum, vaccine, antigenic substance or organism.
A unit of measurement is a standardized quantity of a physical quality.[accessedResource: UO:0000000][accessDate: 2009-11-30]
Tomasz Adamusiak
unit
UO:0000000
BioportalImporter v.1.2
Jie Zheng
NIFSTD:birnlex_2015
MO_3
James Malone
BFTC905
James Malone
Ele Holloway
MOLT-4
MOLT4
James Malone
aortic aneurysm
James Malone
BioportalImporter v.1.2
MP:0006278
protruding sac formed by dilation of the aorta[accessedResource: MP:0006278][accessDate: 2009-11-30]
NCIH2170
James Malone
Ele Holloway
ZFA:0000208
FMAID:7202
BioportalImporter v.1.2
gall bladder
EHDAA:8062
MFO:0003020
TAO:0000208
Organ with organ cavity which is continuous proximally with the cystic duct and distally terminates in the fundus of the gallbladder. Examples: There is only one gallbladder.[accessedResource: FMAID:7202][accessDate: 2009-11-30]
SAEL:44
MAT:0000072
MA:000356
BTO:0000493
EV:0100090
James Malone
EMAPA:17202
Gallbladder[accessedResource: FMAID:7202][accessDate: 2009-11-30]
XAO:0000135
A small, pear-shaped muscular sac, located under the right lobe of the liver, in which bile secreted by the liver is stored until needed by the body for digestion.[accessedResource: BTO:0000493][accessDate: 2009-11-30]
A 3-oxo Delta(4)-steroid that has formula C21H30O2.[accessedResource: CHEBI:17026][accessDate: 2009-11-30]
CHEBI:17026
pregn-4-ene-3,20-dione[accessedResource: CHEBI:17026][accessDate: 2009-11-30]
BioportalImporter v.1.2
progesterone
JVM3
James Malone
Ele Holloway
ductal carcinoma in situ
DOID:8791
carcinoma in situ of breast
James Malone
769P
James Malone
Ele Holloway
mesangial phagocyte
CL:0000777
mesangial cell
James Malone
BioportalImporter v.1.2
A tissue-resident macrophage of the renal glomerular mesangium.[accessedResource: CL:0000777][accessDate: 2009-11-30]
acute Monoblastic Leukemia and acute Monocytic Leukemia[accessedResource: DOID:8864][accessDate: 2009-11-30]
GeneRIF:12547160
acute monocytic leukemia, morphology (morphologic abnormality)[accessedResource: DOID:8864][accessDate: 2009-11-30]
GeneRIF:15145445
acute monocytic leukaemia[accessedResource: DOID:8864][accessDate: 2009-11-30]
acute monocytic leukemia, FAB M5 (disorder)[accessedResource: DOID:8864][accessDate: 2009-11-30]
BioportalImporter v.1.2
acute monoblastic leukemia (disorder)[accessedResource: DOID:8864][accessDate: 2009-11-30]
acute monoblastic leukemia
An acute myeloid leukemia in which 80% or more of the leukemic cells are of monocytic lineage including monoblasts, promonocytes, and MONOCYTES.[accessedResource: MSH:D007948][accessDate: 2009-11-30]
James Malone
ICD9:206.0
acute monocytic leukemia[accessedResource: DOID:8864][accessDate: 2009-11-30]
MSH:D007948
DOID:8864
James Malone
GM11839
MO_881
biosequence provider
Tomasz Adamusiak
James Malone
Ele Holloway
EM2
James Malone
Ele Holloway
BE2C
MO_912
loop design
Tomasz Adamusiak
3-phenyl-4H-chromen-4-one[accessedResource: CHEBI:18220][accessDate: 2009-11-30]
BioportalImporter v.1.2
An isoflavone that has formula C15H10O2.[accessedResource: CHEBI:18220][accessDate: 2009-11-30]
isoflavone
CHEBI:18220
Helen Parkinson
An array consisting of DNA probes bound to a substrate
DNA array
http://en.wikipedia.org/wiki/DNA_microarray#Uses_and_types
data set
A data set is an information entity that is an aggregate of other information entities that have something in common and are considered to form a unit.
James Malone
SH4
James Malone
Ele Holloway
GeneRIF:15070774
GeneRIF:12900510
GeneRIF:15820830
GeneRIF:15340140
GeneRIF:16048634
GeneRIF:15220464
GeneRIF:15044606
Infertile[accessedResource: DOID:5223][accessDate: 2009-11-30]
James Malone
GeneRIF:12606378
GeneRIF:15345679
GeneRIF:12960071
GeneRIF:12877256
GeneRIF:12479028
GeneRIF:15019807
GeneRIF:11868623
GeneRIF:12811541
GeneRIF:11352070
GeneRIF:14511213
GeneRIF:16295654
GeneRIF:15820792
GeneRIF:12042278
GeneRIF:15890676
GeneRIF:15749517
GeneRIF:15811073
GeneRIF:12591952
GeneRIF:15546993
GeneRIF:15070965
GeneRIF:12297552
GeneRIF:15659488
MSH:D007246
GeneRIF:11870081
GeneRIF:15954500
infertility
GeneRIF:14667896
BioportalImporter v.1.2
GeneRIF:12648179
GeneRIF:12818258
GeneRIF:12801998
Inability to reproduce after a specified period of unprotected intercourse. Reproductive sterility is permanent infertility.[accessedResource: MSH:D007246][accessDate: 2009-11-30]
GeneRIF:12297480
GeneRIF:12692150
GeneRIF:14687743
GeneRIF:15820831
GeneRIF:15208629
GeneRIF:15229204
GeneRIF:11925379
Infertile (finding)[accessedResource: DOID:5223][accessDate: 2009-11-30]
GeneRIF:12816981
GeneRIF:12086470
sterile
GeneRIF:12606444
GeneRIF:15474074
GeneRIF:14978268
GeneRIF:15569941
DOID:5223
GeneRIF:15139971
GeneRIF:15166129
GeneRIF:15572448
GeneRIF:12149515
GeneRIF:16169419
GeneRIF:12072412
GeneRIF:12773415
GeneRIF:14673081
James Malone
CS57622 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158646&type=germplasm
CS57622
http://www.arabidopsis.org/servlets/TairObject?id=1005158646&type=germplasm
James Malone
Ele Holloway
COLO320DM
James Malone
GM12874
A drug that binds to but does not activate dopamine receptors, thereby blocking the actions of dopamine or exogenous agonists.[accessedResource: CHEBI:48561][accessDate: 2009-11-30]
CHEBI:48561
CHEBI:48561
James Malone
BioportalImporter v.1.2
dopaminergic antagonist
benzenetriols
CHEBI:22707
James Malone
James Malone
Ele Holloway
NCIH2126
GM12873
James Malone
James Malone
BioportalImporter v.1.2
2,6-bis(propan-2-yl)phenol[accessedResource: CHEBI:44915][accessDate: 2009-11-30]
A phenol that has formula C12H18O.[accessedResource: CHEBI:44915][accessDate: 2009-11-30]
CHEBI:44915
propofol
Lobular organ which consist of a lactiferous duct tree and the set of lactiferous acini that are connected to duct tree. Examples: There are variable numbers of lactiferous duct trees.[accessedResource: FMAID:62088][accessDate: 2009-11-30]
SAEL:64
MAT:0000073
BioportalImporter v.1.2
Lobe of mammary gland[accessedResource: FMAID:62088][accessDate: 2009-11-30]
EMAPA:17759
MA:0000145
The specialized accessory gland of the skin of female mammals that secretes milk. In the human female, it is a compound tubuloalveolar gland composed of 15 to 25 lobes arranged radially about the nipple and separated by connective and adipose tissue, each lobe having its own excretory (lactiferous) duct opening on the nipple. The lobes are subdivided into lobules, with the alveolar ducts and alveoli being the secretory portion of the gland.[accessedResource: BTO:0000817][accessDate: 2009-11-30]
Lobe of breast[accessedResource: FMAID:62088][accessDate: 2009-11-30]
EHDAA:6522
Lactiferous gland[accessedResource: FMAID:62088][accessDate: 2009-11-30]
James Malone
FMAID:62088
BTO:0000817
EV:0100125
mammary gland
JRT3T35
James Malone
Ele Holloway
GM11832
James Malone
Ductal Breast Carcinoma[accessedResource: DOID:3008][accessDate: 2009-11-30]
NCIt:C4017
ductal carcinoma[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
BioportalImporter v.1.2
obsolete_ductal breast carcinoma
DOID:3008
Duct Adenocarcinoma[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Ductal Carcinoma of the Breast[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Ductal Adenocarcinoma[accessedResource: DOID:3008][accessDate: 2009-11-30]
A carcinoma arising from the ducts. While ductal carcinomas can arise at other sites, this term is universally used to refer to carcinomas of the breast. Ductal carcinomas account for about two thirds of all breast cancers. Two types of ductal carcinomas have been described: Ductal carcinoma in situ (DCIS) and invasive ductal carcinoma, not otherwise specified. The latter often spreads to the axillary lymph nodes and other anatomic sites. The two forms of ductal carcinoma often coexist.[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Ductal Carcinoma of Breast[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
James Malone
1.5
Duplicate with invasive ductal carcinoma (EFO_0000186)
true
Duct Carcinoma[accessedResource: NCIt:C4017][accessDate: 2009-11-30]
Meningitis of unspecified cause[accessedResource: DOID:9471][accessDate: 2009-11-30]
GeneRIF:15449178
ICD9:322.9
Unspecified meningitis (disorder)[accessedResource: DOID:9471][accessDate: 2009-11-30]
Meningitis (disorder)[accessedResource: DOID:9471][accessDate: 2009-11-30]
NCIt:C26828
GeneRIF:11821235
James Malone
meningitis due to organism[accessedResource: DOID:9471][accessDate: 2009-11-30]
Meningitis of unspecified cause (disorder)[accessedResource: DOID:9471][accessDate: 2009-11-30]
BioportalImporter v.1.2
SNOMEDCT:7180009
GeneRIF:12707352
MSH:D008581
SNOMEDCT:192678004
DOID:9471
GeneRIF:12198614
Meningitis is a nervous system infection characterized as an inflammation of the pia-arachnoid meninges. It can be caused by growth of bacteria, fungi, or parasites within the subarachnoid space or by the growth of bacteria or viruses within the meningeal or ependymal cells. Meningitis is a diffuse infection caused by a variety of different agents.[accessedResource: DOID:9471][accessDate: 2009-11-30]
SNOMEDCT:192681009
ICD9:322
Meningitis, unspecified[accessedResource: DOID:9471][accessDate: 2009-11-30]
Inflammation of the coverings of the brain and/or spinal cord, which consist of the PIA MATER; ARACHNOID; and DURA MATER. Infections (viral, bacterial, and fungal) are the most common causes of this condition, but subarachnoid hemorrhage (HEMORRHAGES, SUBARACHNOID), chemical irritation (chemical MENINGITIS), granulomatous conditions, neoplastic conditions (CARCINOMATOUS MENINGITIS), and other inflammatory conditions may produce this syndrome. (From Joynt, Clinical Neurology, 1994, Ch24, p6)[accessedResource: MSH:D008581][accessDate: 2009-11-30]
meningitis
ES2
James Malone
Ele Holloway
GeneRIF:15579033
papillary renal cell carcinoma
MSH:D002292
Chromophil Renal Cell Carcinoma[accessedResource: NCIt:C6975][accessDate: 2009-11-30]
NCIt:C6975
A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.[accessedResource: MSH:D002292][accessDate: 2009-11-30]
BioportalImporter v.1.2
DOID:4465
Also known as chromophil carcinoma, it represents a minority of renal cell carcinomas. It can be hereditary or sporadic. The sporadic papillary renal cell carcinoma is characterized by trisomy of chromosomes 7, 16, and 17, and loss of chromosome Y. The peak incidence is in the sixth and seven decades. It is classified as type 1 or 2, based on the cytoplasmic volume and the thickness of the lining neoplastic cells. The prognosis is more favorable than for conventional (clear cell) renal cell carcinoma. -- 2003[accessedResource: NCIt:C6975][accessDate: 2009-11-30]
Chromophil Carcinoma of the Kidney[accessedResource: NCIt:C6975][accessDate: 2009-11-30]
Papillary renal cell carcinoma is a renal cell carcinoma characterized as the second most common type of renal cell carcinoma. The cancerous cells form some projections in a finger shape, called papillae, in the tumor. This type of cancer is more common among African Americans and has a good prognosis if treated with surgery in its early stages.[accessedResource: DOID:4465][accessDate: 2009-11-30]
Papillary (Chromophil) Renal Cell Carcinoma[accessedResource: NCIt:C6975][accessDate: 2009-11-30]
Chromophil Carcinoma of kidney[accessedResource: DOID:4465][accessDate: 2009-11-30]
GeneRIF:15502805
James Malone
GeneRIF:15073597
MO_778
consortium member
Tomasz Adamusiak
GeneRIF:14562119
GeneRIF:15607368
GeneRIF:15674343
GeneRIF:15749074
GeneRIF:15203865
GeneRIF:12760263
GeneRIF:11986950
GeneRIF:12112533
GeneRIF:15659725
GeneRIF:12969963
GeneRIF:15621793
acute myeloid leukaemia, disease[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:16107886
GeneRIF:12096348
GeneRIF:14737076
GeneRIF:15208643
GeneRIF:12481903
GeneRIF:12699896
GeneRIF:12393447
GeneRIF:12921955
MSH:D007950
GeneRIF:12427969
GeneRIF:15297415
GeneRIF:12393285
GeneRIF:16105979
GeneRIF:11823047
GeneRIF:12931227
GeneRIF:14662338
GeneRIF:15575056
GeneRIF:14615365
GeneRIF:11986944
GeneRIF:15385933
GeneRIF:11964319
GeneRIF:12209593
GeneRIF:12163055
GeneRIF:12496475
GeneRIF:12091906
GeneRIF:16094422
GeneRIF:15840695
GeneRIF:15855281
GeneRIF:15978940
GeneRIF:12554803
GeneRIF:11782354
GeneRIF:12935959
GeneRIF:14977832
GeneRIF:15735013
GeneRIF:12351377
GeneRIF:12529664
GeneRIF:15985538
acute myeloid leukaemia - category[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:12031912
GeneRIF:15103390
GeneRIF:12661007
GeneRIF:15085153
GeneRIF:12411058
GeneRIF:12557231
GeneRIF:15718420
GeneRIF:15674355
GeneRIF:12200377
GeneRIF:11921279
GeneRIF:15604885
GeneRIF:12239147
GeneRIF:12393438
GeneRIF:14654525
GeneRIF:12127405
GeneRIF:15388581
GeneRIF:15282682
GeneRIF:15304385
GeneRIF:12239146
GeneRIF:14737077
GeneRIF:15451031
GeneRIF:15569991
GeneRIF:15522959
GeneRIF:12351411
GeneRIF:12145704
GeneRIF:15334552
GeneRIF:11999574
GeneRIF:14689061
GeneRIF:12171774
acute non-lymphocytic leukaemia[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:16239914
GeneRIF:12130514
GeneRIF:12676584
GeneRIF:15289327
GeneRIF:15921740
GeneRIF:12161354
GeneRIF:16115907
GeneRIF:12855590
GeneRIF:15725483
GeneRIF:12433286
GeneRIF:12393383
GeneRIF:12187073
GeneRIF:12171773
GeneRIF:12417632
GeneRIF:12738986
GeneRIF:12145683
GeneRIF:15607361
GeneRIF:12926083
GeneRIF:15983063
GeneRIF:12691136
GeneRIF:14959847
GeneRIF:12008077
GeneRIF:11920209
GeneRIF:12461747
Leukemia, Myelocytic, acute[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:15849776
GeneRIF:12970781
GeneRIF:15489901
GeneRIF:12393450
GeneRIF:14726504
GeneRIF:11847008
GeneRIF:15959531
GeneRIF:14966562
GeneRIF:15061191
GeneRIF:15988004
GeneRIF:11986947
GeneRIF:12543865
GeneRIF:12660026
GeneRIF:12696071
GeneRIF:11986951
GeneRIF:15146183
GeneRIF:15203866
GeneRIF:14580777
GeneRIF:14749703
GeneRIF:15902282
AML - acute Myeloid Leukemia[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:12970762
GeneRIF:15618958
GeneRIF:12036858
GeneRIF:16138343
James Malone
GeneRIF:12665971
GeneRIF:11714811
GeneRIF:11830489
GeneRIF:15325104
acute myeloblastic leukemia (disorder)[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:12717436
GeneRIF:14628086
GeneRIF:15039279
GeneRIF:15234575
GeneRIF:15772702
GeneRIF:12560229
ICD9:205.0
GeneRIF:14615378
GeneRIF:15054042
GeneRIF:12082641
GeneRIF:14654079
DOID:9119
GeneRIF:12008078
AML[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:12389613
GeneRIF:14654075
GeneRIF:15604894
GeneRIF:12854887
GeneRIF:14506644
GeneRIF:12031914
GeneRIF:12799277
GeneRIF:12618766
GeneRIF:12408767
GeneRIF:12369998
GeneRIF:15309527
GeneRIF:14674243
GeneRIF:12637330
GeneRIF:12453880
GeneRIF:12152989
GeneRIF:14630076
acute myeloid leukaemia[accessedResource: DOID:9119][accessDate: 2009-11-30]
GeneRIF:12060632
GeneRIF:15849769
GeneRIF:16012335
GeneRIF:15735743
GeneRIF:14623259
acute myeloid leukemia
GeneRIF:14966519
GeneRIF:11809673
GeneRIF:12604403
GeneRIF:14738146
GeneRIF:14762685
GeneRIF:12186696
acute myelogenous leukemia
GeneRIF:15313458
GeneRIF:11755471
GeneRIF:15128421
GeneRIF:12208746
GeneRIF:15831697
GeneRIF:14576828
GeneRIF:12070009
GeneRIF:15717688
GeneRIF:11911810
BioportalImporter v.1.2
GeneRIF:16136505
COLO704
James Malone
Ele Holloway
NIFSTD:sao279801585
MO_144
A measurement is an information entity that is a recording of the output of a measurement such as produced by an instrument.
measurement
Tomasz Adamusiak
Jie Zheng
James Malone
An indole-3-acetic acid that has formula C19H16ClNO4.[accessedResource: CHEBI:49662][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
[1-(4-chlorobenzoyl)-5-methoxy-2-methyl-1H-indol-3-yl]acetic acid[accessedResource: CHEBI:49662][accessDate: 2009-11-30]
indomethacin
CHEBI:49662
MO_934
Tomasz Adamusiak
optimization design
James Malone
Damage inflicted on the body as the direct or indirect result of an external force, with or without disruption of structural continuity
injury
BDCM
James Malone
Ele Holloway
SHP77
James Malone
Ele Holloway
James Malone
Ele Holloway
NCIH2228
Human Papilloma Virus Infection[accessedResource: NCIt:C27851][accessDate: 2009-11-30]
HPV
James Malone
BioportalImporter v.1.2
human papilloma virus
NCIt:C27851
GM12875
James Malone
MO_71
the A. thaliana Ecotype Ler
A biotype resulting from selection in a particular habitat, e.g. the A. thaliana Ecotype Ler
ecotype
Tomasz Adamusiak
Jie Zheng
James Malone
CL:0000222
James Malone
BioportalImporter v.1.2
A cell of the middle germ layer of the embryo.[accessedResource: CL:0000222][accessDate: 2009-11-30]
mesoderm cell[accessedResource: CL:0000222][accessDate: 2009-11-30]
mesoblast[accessedResource: CL:0000222][accessDate: 2009-11-30]
mesodermal cell
true
James Malone
Ele Holloway
1.8
duplicate of EFO_0002067 (K562)
obsolete_K562
BTO:0000365
EHDAA:3830
EMAPA:18852
duodenum
BioportalImporter v.1.2
MAT:0000044
SAEL:31
XAO:0000236
FMAID:7206
MA:0000338
The first part of the small intestine extending from the pylorus to the jejunum.[accessedResource: BTO:0000365][accessDate: 2009-11-30]
James Malone
EV:0100073
acute myelomonocytic leukemia
James Malone
Acute Myelomonocytic Leukemia (FAB Type M4)[accessedResource: NCIt:C7463][accessDate: 2009-11-30]
NCIt:C7463
AMML[accessedResource: NCIt:C7463][accessDate: 2009-11-30]
Acute M4 Myeloid Leukemia[accessedResource: NCIt:C7463][accessDate: 2009-11-30]
An acute leukemia characterized by the proliferation of both neutrophil and monocyte precursors. Patients typically present with anemia, thrombocytopenia, fever and fatigue. This type of leukemia frequently responds to aggressive therapy. (WHO, 2001) -- 2003
[Source: NCI Thesaurus C7463]
BioportalImporter v.1.2
consultant
Tomasz Adamusiak
MO_984
GM11882
James Malone
FaDu
James Malone
Ele Holloway
pregnenolone 16alpha-carbonitrile
BioportalImporter v.1.2
A nitrile that has formula C22H31NO2.[accessedResource: CHEBI:35591][accessDate: 2009-11-30]
CHEBI:35591
3beta-hydroxy-20-oxopregn-5-ene-16alpha-carbonitrile[accessedResource: CHEBI:35591][accessDate: 2009-11-30]
indole-3-acetic acid
1H-indol-3-ylacetic acid[accessedResource: CHEBI:16411][accessDate: 2009-11-30]
CHEBI:16411
James Malone
BioportalImporter v.1.2
An indole-3-acetic acid that has formula C10H9NO2.[accessedResource: CHEBI:16411][accessDate: 2009-11-30]
James Malone
Ele Holloway
COLO668
NCIt:C13740
Embryoblast[accessedResource: NCIt:C13740][accessDate: 2009-11-30]
inner cell mass
James Malone
BioportalImporter v.1.2
James Malone
Ele Holloway
SJRH30
AsPC1
James Malone
Ele Holloway
operator variation design
MO_519
Tomasz Adamusiak
NCIH2195
James Malone
Ele Holloway
James Malone
ATCC number: CRL-2265
CEM-c1
GM12891
James Malone
MAT:0000221
PO:0006308
ZEA:0015158
James Malone
lateral root meristem
OntologyMappingImporter following MAT:0000221
BFO:SpecificallyDependentContinuant
James Malone
sample characteristic
An experimental factor which is a property or characteristic of some other entity. For example, the mouse has the colour white.
material property
mesenchymal stem cell
James Malone
BioportalImporter v.1.2
NCIt:C43423
conditioned mesenchymal stem cell
60 seconds duration of centrifugation
Tomasz Adamusiak
James Malone
duration
NIFSTD:birnlex_2052
A temporal measurement of the time between two specified points.
James Malone
Ele Holloway
Jiyoye
BioportalImporter v.1.2
James Malone
Acute Promyelocytic Leukemia with t(15;17)(q22;q12); PML-RARA[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
An acute myeloid leukemia (AML) in which abnormal promyelocytes predominate. It is characterized by the t(15;17)(q22;q12) translocation. There are two variants: the typical and microgranular variant. This AML is particularly sensitive to treatment with all trans-retinoic acid and has a favorable prognosis. (WHO, 2001)[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
Promyelocytic Leukemia[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
AML with t(15;17)(q22;q12)[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
APL[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
An acute myeloid leukemia (AML) in which abnormal promyelocytes predominate. It is characterized by the t(15;17)(q22;q12) translocation. There are two variants: the typical and micro granular (hypo granular) variant. This AML is particularly sensitive to treatment with all trans-retinoic acid and has a favorable prognosis. (WHO, 2001) -- 2003
[Source: NCI Thesaurus C3182]
APML - Acute promyelocytic leukemia[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
NCIt:C3182
APML[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
FAB M3[accessedResource: NCIt:C3182][accessDate: 2009-11-30]
acute promyelocytic leukemia
MAT:0000495
XAO:0000166
Suprarenal medulla[accessedResource: FMAID:15633][accessDate: 2009-11-30]
EMAPA:18428
EV:0100135
MA:0000119
Medulla of adrenal gland[accessedResource: FMAID:15633][accessDate: 2009-11-30]
Medulla of suprarenal gland[accessedResource: FMAID:15633][accessDate: 2009-11-30]
FMAID:15633
Medulla (Glandula suprarenalis)[accessedResource: FMAID:15633][accessDate: 2009-11-30]
BTO:0000049
adrenal medulla
James Malone
The inner, reddish-brown portion of the adrenal glands that synthesizes, stores, and releases epinephrine and norepinephrine.[accessedResource: BTO:0000049][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIH2171
James Malone
Ele Holloway
A container which is used to maintain constant contact of a liquid on an array. This can be either a glass vial or slide.[accessedResource: OBI_0400110][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
hybridization chamber
OBI_0400110
MO_563
James Malone
GM11881
curator
Tomasz Adamusiak
MO_893
BioportalImporter v.1.2
prochlorperazine
A N-methylpiperazine that has formula C20H24ClN3S.[accessedResource: CHEBI:8435][accessDate: 2009-11-30]
2-chloro-10-[3-(4-methylpiperazin-1-yl)propyl]-10H-phenothiazine[accessedResource: CHEBI:8435][accessDate: 2009-11-30]
CHEBI:8435
James Malone
James Malone
Ele Holloway
G401
Not needed.
obsolete_nucleic acid extracted
The type of nucleic acid obtained as a result of following a given protocol.
true
James Malone
GM12146
ObOb
http://www.cbil.upenn.edu/RAD/DGAP/php/displayStudy.php?study_id=2340&&download=1#study2340
Mouse strain with deficiency of the leptin gene (ObOb).
Tomasz Adamusiak
Jie Zheng
thymocyte
An immature T cell located in the thymus.[accessedResource: CL:0000893][accessDate: 2009-11-30]
immature T lymphocyte
immature T cell
CL:0000893
Tomasz Adamusiak
BioportalImporter v.1.2
James Malone
ZFS:0000017
gastrula 50%-epiboly
Tomasz Adamusiak
James Malone
L[accessedResource: UO:0000099][accessDate: 2009-11-30]
liter
UO:0000099
Jie Zheng
BioportalImporter v.1.2
A liter is a volume unit which is equal to one thousandth of a cubic meter or 10^-3 m^3, or to 1 decimeter.
MO_444
A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.[accessedResource: UO:0000099][accessDate: 2009-11-30]
James Malone
Ele Holloway
KYSE30
James Malone
TERV-ST
Pseudomonas aeruginosa PA14 infection
James Malone
A Pseudomonas aeruginosa PA14 infection is a Pseudomonas infection of strain PA14.
Plotnikova, J. M., Rahme, L. G., Ausubel, F. M. (2000). Pathogenesis of the Human Opportunistic Pathogen Pseudomonas aeruginosa PA14 in Arabidopsis. Plant Physiol. 124: 1766-1774
A vortexer is an instrument that mixes small vials of liquid by creating a rotation of the liquid around its own center. It consists of an electric motor with the drive shaft oriented vertically and attached to a cupped rubber piece mounted slightly off-center. As the motor runs the rubber piece oscillates rapidly in a circular motion. When a test tube or other appropriate container is pressed into the rubber cup (or touched to its edge) the motion is transmitted to the liquid inside and a vortex is created. [accessedResource: http://purl.obolibrary.org/obo/OBI_0400117][accessDate: 2009-08-12]
vortexer
MO_983
Tomasz Adamusiak
Jie Zheng
James Malone
James Malone
BioportalImporter v.1.2
CHEBI:38828
non ionic surfactant
A surfactant with an uncharged hydrophilic headgroup.[accessedResource: CHEBI:38828][accessDate: 2009-11-30]
CHEBI:24127
James Malone
CHEBI:24127
BioportalImporter v.1.2
fungicide
A substance used to destroy fungal pests.[accessedResource: CHEBI:24127][accessDate: 2009-11-30]
ventral striatum
James Malone
FMA:77614
Kc
James Malone
Ele Holloway
Malignant Peripheral Nerve Sheath Tumor[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Peripheral Nerve Sheath Neoplasm[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant peripheral nerve sheath tumor [dup] (morphologic abnormality)[accessedResource: DOID:5940][accessDate: 2009-11-30]
Malignant Neurilemoma[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
GeneRIF:14991838
SNOMEDCT:404037002
An uncommon, highly aggressive malignant tumor, arising from the peripheral nerves and affecting mostly adults in their third to sixth decades of life. It usually occurs in medium-sized and large nerves of the buttock, thigh, upper arm, or the paraspinal region. It may be associated with neurofibromatosis 1 (NF1).
[Source: NCI Thesaurus C3798]
MSH:D018317
true
SNOMEDCT:19897006
GeneRIF:12152785
GeneRIF:14519636
GeneRIF:12782393
Malignant Schwannoma[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
BioportalImporter v.1.2
obsolete_malignant peripheral nerve sheath tumor class
GeneRIF:11642720
DOID:5940
Malignant peripheral nerve sheath tumor (morphologic abnormality)[accessedResource: DOID:5940][accessDate: 2009-11-30]
Malignant Tumor of Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
MPNST[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Neoplasm of the Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Peripheral Nerve Sheath Tumour[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Neurilemmoma[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Tumor of the Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Neoplasm of Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Neoplasms which arise from nerve sheaths formed by SCHWANN CELLS in the PERIPHERAL NERVOUS SYSTEM or by OLIGODENDROCYTES in the CENTRAL NERVOUS SYSTEM. Malignant peripheral nerve sheath tumors, NEUROFIBROMA, and NEURILEMMOMA are relatively common tumors in this category.[accessedResource: MSH:D018317][accessDate: 2009-11-30]
GeneRIF:12660952
Malignant peripheral nerve sheath tumor (disorder)[accessedResource: DOID:5940][accessDate: 2009-11-30]
NCIt:C3798
GeneRIF:12917360
GeneRIF:12730955
James Malone
CS57625 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158649&type=germplasm
CS57625
http://www.arabidopsis.org/servlets/TairObject?id=1005158649&type=germplasm
GeneRIF:12508351
chronic gastritis (disorder)[accessedResource: DOID:4032][accessDate: 2009-11-30]
GeneRIF:15962365
NCIt:C26929
chronic gastritis NOS (disorder)[accessedResource: DOID:4032][accessDate: 2009-11-30]
James Malone
GeneRIF:11642721
DOID:4032
chronic gastritis
SNOMEDCT:196736000
BioportalImporter v.1.2
SNOMEDCT:8493009
GeneRIF:12738381
GeneRIF:15104366
James Malone
Ele Holloway
TANOUE
SNP array is a DNA array used to detect polymorphisms in DNA samples
Helen Parkinson
SNP array
CS57776
CS57776 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158800&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158800&type=germplasm
James Malone
James Malone
Ele Holloway
A427
972h- is a yeast strain as described in article PMID 12753
972h-
PMID: 12753
James Malone
CS57737 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158761&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158761&type=germplasm
James Malone
CS57737
CHEBI:48358
polar aprotic solvent
CHEBI:48358
James Malone
James Malone
GM12154
DOID:2681
nevus
Tomasz Adamusiak
James Malone
IR(lox/lox) transfection mouse strain maintained on a mixed (C57BL/6 x 129/Sv) genetic background.
IR (lox/lox)
PMID:9844629
Tomasz Adamusiak
Jie Zheng
James Malone
cleavage stage
James Malone
TERV-ST110
A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.[accessedResource: UO:0000098][accessDate: 2009-11-30]
Jie Zheng
A milliliter is a volume unit which is equal to one thousandth of a liter or 10^-3 L, or to 1 cubic centimeter.
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
UO:0000098
ml[accessedResource: UO:0000098][accessDate: 2009-11-30]
milliliter
MO_488
Kasumi2
James Malone
Ele Holloway
CHEBI:24621
An endogenous compound that is formed in specialized organ or group of cells and carried to another organ or group of cells, in the same organism, upon which it has a specific regulatory function.[accessedResource: CHEBI:24621][accessDate: 2009-11-30]
James Malone
hormone role
BioportalImporter v.1.2
CHEBI:24621
nocodazole
CHEBI:34892
BioportalImporter v.1.2
methyl [5-(2-thienylcarbonyl)-1H-benzimidazol-2-yl]carbamate[accessedResource: CHEBI:34892][accessDate: 2009-11-30]
A thiophene that has formula C14H11N3O3S.[accessedResource: CHEBI:34892][accessDate: 2009-11-30]
Y. Apidianakis, M.N. Mindrinos, W. Xiao, G.W. Lau, R.L. Baldini, R.W. Davis and L.G. Rahme, Profiling early infection responses: Pseudomonas aeruginosa eludes host defenses by suppressing antimicrobial peptide gene expression, Proc. Natl. Acad. Sci. USA 102 (2005), pp. 2573–2578
James Malone
A Pseudomonas aeruginosa CF5 infection is a Pseudomonas infection of strain CF5.
Pseudomonas aeruginosa CF5 infection
A microarray wash station is an instrument used to wash or stain microarrays.
microarray wash station
MO_626
James Malone
Tomasz Adamusiak
James Malone
NIFSTD:birnlex_203
rat strain
Strain or line specific to rat.
Tomasz Adamusiak
Jie Zheng
chromosomal aberration
true
An irregularity in the number or structure of chromosomes, usually in the form of a gain (duplication), loss (deletion), exchange (translocation), or alteration in sequence (inversion) of genetic material.
MO_78
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158650&type=germplasm
CS57626
CS57626 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158650&type=germplasm
metabolic syndrome
James Malone
BTO:0001563
vastus lateralis
NCIt:C53073
James Malone
BioportalImporter v.1.2
The division of the quadriceps muscle that covers the outer anterior aspect of the femur, arises chiefly from the femur, and inserts into the outer border of the patella by a flat tendon which blends with that of the other divisions of the muscle and sends an expansion to the capsule of the knee.[accessedResource: BTO:0001563][accessDate: 2009-11-30]
James Malone
Ele Holloway
K562
protein binding array
protein array
Helen Parkinson
http://en.wikipedia.org/wiki/Protein_microarray
A protein array is an array which provides a multiplex approach to identify protein–protein interactions, to identify the substrates of protein kinases, to identify transcription factor protein-activation, or to identify the targets of biologically active small molecules. The array is a substrate (e.g. glass) on which different molecules of protein or specific DNA binding sequences (as capture probes for the proteins) have been affixed at separate locations in an ordered manner thus forming a microscopic array. The most common protein microarray is the antibody microarray, where antibodies are spotted onto the protein chip and are used as capture molecules to detect proteins from cell lysate solutions.
James Malone
CS57771
CS57771 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158795&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158795&type=germplasm
CHEBI:4836
BioportalImporter v.1.2
(13Z)-docos-13-enoic acid[accessedResource: CHEBI:4836][accessDate: 2009-11-30]
CHEBI:4836
A docosenoic acid that has formula C22H42O2.[accessedResource: CHEBI:4836][accessDate: 2009-11-30]
amphiprotic solvent
James Malone
erucic acid[accessedResource: CHEBI:4836][accessDate: 2009-11-30]
A498
James Malone
Ele Holloway
CS57735
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158759&type=germplasm
CS57735 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158759&type=germplasm
James Malone
use leukocyte EFO_0000566
CL:0000738
obsolete_white blood cell
BioportalImporter v.1.2
leucocyte[accessedResource: CL:0000738][accessDate: 2009-11-30]
white blood cell[accessedResource: CL:0000738][accessDate: 2009-11-30]
leukocyte[accessedResource: CL:0000738][accessDate: 2009-11-30]
A nucleated cell of the myeloid or lymphoid lineages, found in blood or other tissue.[accessedResource: CL:0000738][accessDate: 2009-11-30]
immune cell[accessedResource: CL:0000738][accessDate: 2009-11-30]
true
Tomasz Adamusiak
Jie Zheng
https://www.cbil.upenn.edu/RADQuerier/php/displayStudy.php?study_id=449
Athero-protected regions of aorta.
undisturbed flow regions
BioportalImporter v.1.2
A benzodiazepine that has formula C18H19ClN4.[accessedResource: CHEBI:3766][accessDate: 2009-11-30]
clozapine
8-chloro-11-(4-methylpiperazin-1-yl)-5H-dibenzo[b,e][1,4]diazepine[accessedResource: CHEBI:3766][accessDate: 2009-11-30]
CHEBI:3766
James Malone
Helen Parkinson
MO_10
Helen Parkinson
Tomasz Adamusiak
Tomasz Adamusiak
Concept naming convention is lower case natural naming with spaces, when necessary captials should be used, for example disease factor, HIV, breast carcinoma, Ewing's sarcoma
Jie Zheng
An experimental factor in Array Express.
An experimental factor in Array Express which are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner.
James Malone
James Malone
experimental factor
GM12144
James Malone
EV:0100397
SAEL:15
Cecum[accessedResource: FMAID:14541][accessDate: 2009-11-30]
Intestinum crassum caecum[accessedResource: FMAID:14541][accessDate: 2009-11-30]
The first part of the large intestine, forming a dilated pouch into which open the ileum, colon, and appendix vermiformis.[accessedResource: BTO:0000166][accessDate: 2009-11-30]
caecum
James Malone
BTO:0000166
FMAID:14541
MAT:0000288
EHDAA:3913
MA:00000334
BioportalImporter v.1.2
CL:0000216
A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier.[accessedResource: CL:0000216][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
Sertoli cell
James Malone
MALT lymphoma
MO_179
MO_155
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
volume unit
Jie Zheng
A volume unit is a derived unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
UO:0000095
A derived unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.[accessedResource: UO:0000095][accessDate: 2009-11-30]
insecticide
CHEBI:24852
BioportalImporter v.1.2
CHEBI:24852
A substance used to destroy pests of the class Insecta.[accessedResource: CHEBI:24852][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
Jie Zheng
software
MO_109
IAO_0000010
novobiocin
CHEBI:28368
James Malone
Ele Holloway
KPL1
GeneRIF:14734763
James Malone
SNOMEDCT:63398001
MSH:D011552
Bacterial infection due to Pseudomonas (disorder)[accessedResource: DOID:2903][accessDate: 2009-11-30]
GeneRIF:15950065
GeneRIF:15375173
GeneRIF:11906036
Infections with bacteria of the genus PSEUDOMONAS.[accessedResource: MSH:D011552][accessDate: 2009-11-30]
BioportalImporter v.1.2
DOID:2903
GeneRIF:14695625
Pseudomonas infection
GeneRIF:16299282
HPL1
James Malone
Ele Holloway
CCRFCEM
James Malone
Ele Holloway
SNOMEDCT:109994006
Idiopathic thrombocythaemia[accessedResource: DOID:2224][accessDate: 2009-11-30]
Essential (hemorrhagic) thrombocythemia[accessedResource: DOID:2224][accessDate: 2009-11-30]
GeneRIF:14764528
GeneRIF:12221665
James Malone
primary Thrombocytosis[accessedResource: DOID:2224][accessDate: 2009-11-30]
GeneRIF:14966468
Idiopathic thrombocythemia[accessedResource: DOID:2224][accessDate: 2009-11-30]
A chronic myeloproliferative disorder that involves primarily the megakaryocytic lineage. It is characterized by sustained thrombocytosis in the blood, increased numbers of large, mature megakaryocytes in the bone marrow, and episodes of thrombosis and/or hemorrhage. The cause is unknown. Median survival times of 10-15 years are commonly reported. (WHO, 2001)
[Source: NCI Thesaurus C3407]
Essential thrombocytosis (disorder)[accessedResource: DOID:2224][accessDate: 2009-11-30]
Essential thrombocythaemia[accessedResource: DOID:2224][accessDate: 2009-11-30]
Idiopathic thrombocythemia (disorder)[accessedResource: DOID:2224][accessDate: 2009-11-30]
GeneRIF:15837627
Essential thrombocythemia (morphologic abnormality)[accessedResource: DOID:2224][accessDate: 2009-11-30]
NCIt:C3407
MSH:D013920
A clinical syndrome characterized by repeated spontaneous hemorrhages and a remarkable increase in the number of circulating platelets.[accessedResource: MSH:D013920][accessDate: 2009-11-30]
GeneRIF:12091373
BioportalImporter v.1.2
GeneRIF:11860444
GeneRIF:12756017
hemorrhagic thrombocythemia[accessedResource: DOID:2224][accessDate: 2009-11-30]
GeneRIF:11891801
DOID:2224
Primary Thrombocythemia[accessedResource: NCIt:C3407][accessDate: 2009-11-30]
SNOMEDCT:128844009
GeneRIF:12377969
Essential thrombocythaemia (disorder)[accessedResource: DOID:2224][accessDate: 2009-11-30]
Essential Thrombocytemia[accessedResource: NCIt:C3407][accessDate: 2009-11-30]
essential thrombocythemia
essential thrombocytosis[accessedResource: NCIt:C3407][accessDate: 2009-11-30]
GeneRIF:12010817
GeneRIF:11986368
insulinoma
Beta Cell Neoplasm of the Pancreas[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
SNOMEDCT:134154009
GeneRIF:15060136
DOID:3903
GeneRIF:14656003
Beta Cell Tumor of Pancreas[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Pancreatic Insulin Producing Tumor[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
GeneRIF:12688630
Pancreatic Insulin Producing Neoplasm[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Insulin-Producing Islet Cell Neoplasm[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
GeneRIF:12417605
Insulinoma (disorder)[accessedResource: DOID:3903][accessDate: 2009-11-30]
BioportalImporter v.1.2
Insulinoma NOS (morphologic abnormality)[accessedResource: DOID:3903][accessDate: 2009-11-30]
GeneRIF:14602773
Insulin-Producing Neoplasm of the Islet Cells[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
James Malone
Beta Cell Neoplasm of Pancreas[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
SNOMEDCT:25324008
A usually benign, well circumscribed neoplasm arising from the beta cells of the pancreas. Patients exhibit symptoms related to hypoglycemia due to inappropriate secretion of insulin.
[Source: NCI Thesaurus C3140]
Insulinoma (morphologic abnormality)[accessedResource: DOID:3903][accessDate: 2009-11-30]
Insulin-Producing Islet Cell Tumor[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Beta Cell Neoplasm[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Insulin-Producing Tumor of the Islet Cells[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Beta Cell Tumor[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
SNOMEDCT:302822000
MSH:D007340
Pancreatic Beta Cell Tumor[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Insulin-Producing Neoplasm of Islet Cells[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
A benign tumor of the PANCREATIC BETA CELLS. Insulinoma secretes excess INSULIN resulting in HYPOGLYCEMIA.[accessedResource: MSH:D007340][accessDate: 2009-11-30]
GeneRIF:12475221
NCIt:C3140
Insulin-Producing Tumor of Islet Cells[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
Beta Cell Tumor of the Pancreas[accessedResource: NCIt:C3140][accessDate: 2009-11-30]
The greater extensor muscle of the front of the thigh that is divided into four parts: rectus femoris, vastus intermedius, vastus lateralis, and vastus medialis.[accessedResource: BTO:0001149][accessDate: 2009-11-30]
A group of four powerful muscles in the front of the thigh. Their actions involve the extension of the knee joint.[accessedResource: NCIt:C33441][accessDate: 2009-11-30]
James Malone
quadriceps muscle of thigh
quadricep muscle
Quadriceps Muscle of the Thigh[accessedResource: NCIt:C33441][accessDate: 2009-11-30]
BioportalImporter v.1.2
quadriceps
NCIt:C33441
BTO:0001149
Chromophobe Carcinoma[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
MSH:D002292
A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.[accessedResource: MSH:D002292][accessDate: 2009-11-30]
Chromophobe Cell Carcinoma of the Kidney[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
Chromophobe carcinoma (morphologic abnormality)[accessedResource: DOID:4471][accessDate: 2009-11-30]
Chromophobe Cell Carcinoma of Kidney[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
Renal Cell Carcinoma, Chromophobe Type[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
BioportalImporter v.1.2
Chromophobe Adenocarcinoma[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
Renal cell carcinoma, chromophobe cell[accessedResource: DOID:4471][accessDate: 2009-11-30]
SNOMEDCT:1443001
DOID:4471
Chromophobe Carcinoma of Kidney[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
James Malone
chromophobe renal cell carcinoma
SNOMEDCT:128667008
A type of carcinoma that comprises a minority of renal cell carcinomas. It is characterized by loss of chromosomes 1 and Y. Based on the cytoplasmic characteristics of the neoplastic cells, this type of carcinoma is classified as classic (typical) or eosinophilic. It has a much better prognosis than other renal cell carcinomas.[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
Chromophobe Carcinoma of the Kidney[accessedResource: NCIt:C4146][accessDate: 2009-11-30]
Chromophobe adenocarcinoma is a renal cell carcinoma described as the third most common type of renal cell carcinoma. The cancerous cells are similar with the clear cells, they appear pale when viewed under microscope, but there are larger and display different features than clear cells. This type of cancer rarely metastasizes, and the tumors can be successfully removed with surgery.[accessedResource: DOID:4471][accessDate: 2009-11-30]
NCIt:C4146
GeneRIF:12827055
ICD9:372.40
An abnormal triangular fold of membrane in the interpalpebral fissure, extending from the conjunctiva to the cornea, being immovably united to the cornea at its apex, firmly attached to the sclera throughout its middle portion, and merged with the conjunctiva at its base. (Dorland, 27th ed)[accessedResource: MSH:D011625][accessDate: 2009-11-30]
SNOMEDCT:193884009
ICD9:372.4
pterygium
MSH:D011625
SNOMEDCT:193879003
GeneRIF:14533030
Pterygium NOS (disorder)[accessedResource: DOID:10526][accessDate: 2009-11-30]
Web eye[accessedResource: DOID:10526][accessDate: 2009-11-30]
GeneRIF:15523624
GeneRIF:15273656
BioportalImporter v.1.2
Conjunctival Pterygium[accessedResource: DOID:10526][accessDate: 2009-11-30]
DOID:10526
Pterygium, unspecified[accessedResource: DOID:10526][accessDate: 2009-11-30]
Unspecified pterygium (disorder)[accessedResource: DOID:10526][accessDate: 2009-11-30]
SNOMEDCT:77489003
James Malone
A673
James Malone
Ele Holloway
chow, fertilizer, DEMM 10%FBS
MO_867
Jie Zheng
nutrient
Tomasz Adamusiak
this should become a quality of a material i think
James Malone
The food provided to the organism (e.g., chow, fertilizer, DEMM 10%FBS, etc.).
MDAMB361
James Malone
James Malone
CS57778
http://www.arabidopsis.org/servlets/TairObject?id=1005158802&type=germplasm
CS57778 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158802&type=germplasm
CHEBI:48279
James Malone
BioportalImporter v.1.2
Drugs that bind to but do not activate serotonin receptors, thereby blocking the actions of serotonin or serotonergic agonists.[accessedResource: CHEBI:48279][accessDate: 2009-11-30]
serotonergic antagonist
CHEBI:48279
http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311932
CS57511 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311932.
CS57511
James Malone
BioportalImporter v.1.2
CHEBI:35696
cobalt dichloride
Chloride of cobalt in which the metal is in the +2 oxidation state.[accessedResource: CHEBI:35696][accessDate: 2009-11-30]
cobalt(II) chloride[accessedResource: CHEBI:35696][accessDate: 2009-11-30]
cobalt(2+) chloride[accessedResource: CHEBI:35696][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
tail bud
BTO:0001445
Tomasz Adamusiak
BioportalImporter v.1.2
CL:0000499
A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere.[accessedResource: CL:0000499][accessDate: 2009-11-30]
stromal cell
GM12145
James Malone
BioportalImporter v.1.2
CHEBI:35475
An anti-inflammatory drug that is not a steroid. In addition to anti-inflammatory actions, non-steroidal anti-inflammatory drugs have analgesic, antipyretic, and platelet-inhibitory actions. They act by blocking the synthesis of prostaglandins by inhibiting cyclooxygenase, which converts arachidonic acid to cyclic endoperoxides, precursors of prostaglandins.[accessedResource: CHEBI:35475][accessDate: 2009-11-30]
non-steroidal anti-inflammatory drug
MELAS syndrome
James Malone
BioportalImporter v.1.2
MSH:D017241
GeneRIF:15466014
DOID:3687
A mitochondrial disorder characterized by focal or generalized seizures, episodes of transient or persistent neurologic dysfunction resembling strokes, and ragged-red fibers on muscle biopsy. Affected individuals tend to be normal at birth through early childhood, then experience growth failure, episodic vomiting, and recurrent cerebral insults resulting in visual loss and hemiparesis. The cortical lesions tend to occur in the parietal and occipital lobes and are not associated with vascular occlusion. VASCULAR HEADACHE is frequently associated and the disorder tends to be familial. (From Joynt, Clinical Neurology, 1992, Ch56, p117)[accessedResource: MSH:D017241][accessDate: 2009-11-30]
BioportalImporter v.1.2
An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.[accessedResource: UO:0000221][accessDate: 2009-11-30]
dalton
UO:0000221
James Malone
u[accessedResource: UO:0000221][accessDate: 2009-11-30]
unified atomic mass unit[accessedResource: UO:0000221][accessDate: 2009-11-30]
Da[accessedResource: UO:0000221][accessDate: 2009-11-30]
A dalton is a mass unit is an independent unit to the base SI units and is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.
ovarian carcinoma
James Malone
TERV-AntiSenseB56
James Malone
KU812
James Malone
Ele Holloway
James Malone
Ele Holloway
CEMC1
psychiatric disorder
Tomasz Adamusiak
James Malone
NIFSTD:birnlex_12669
A tiling array is an array which has short fragments of nucleic acid immobilized on a substrate. These are designed to cover the whole genome of the target species. Tiling arrays are used to determine genome binding in ChIP assays or to identify transcribed regions.
Helen Parkinson
tiling array
http://en.wikipedia.org/wiki/Tiling_array
genome tiling array
KELLY
James Malone
Ele Holloway
James Malone
BioportalImporter v.1.2
Waste material that is secreted by the kidney in vertebrates, is rich in end products of protein metabolism together with salts and pigments, and forms a clear amber and usually slightly acid fluid in mammals but is semisolid in birds and reptiles.[accessedResource: BTO:0001419][accessDate: 2009-11-30]
BTO:0001419
urine
Tomasz Adamusiak
MO_399
Jie Zheng
true
An MMHCC (Mouse Models of Human Cancers Consortium) part is an organism part that has been modelled by the MMHCC, a program to develop and refine experimental models that reflect the etiology and progression of human cancer.
NCIt:C19750
obsolete_MMHCC part
BioportalImporter v.1.2
Mouse Models of Human Cancer Consortium[accessedResource: NCIt:C19750][accessDate: 2009-11-30]
A program to develop and refine experimental models that reflect the etiology and progression of human cancer.
[Source: NCI Thesaurus C19750]
Obsolete: No longer required in EFO
MMHCC[accessedResource: NCIt:C19750][accessDate: 2009-11-30]
James Malone
jasmonic acids
CHEBI:24937
James Malone
CHEBI:24937
hardware
instrument
An instrument is a device which provides a mechanical or electronic function. [accessedResource: http://purl.obolibrary.org/obo/OBI_0400003][accessDate: 2009-08-10]
OBI_0400003
James Malone
Jie Zheng
Tomasz Adamusiak
MO_113
MO_134
CS57624
CS57624 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158648&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158648&type=germplasm
James Malone
NCIt:C2947
DOID:3302
SNOMEDCT:50007008
A malignant bone tumor arising from the remnants of the fetal notochord. Although it can occur at all ages, it is more frequently seen in middle-aged adults. Most frequent sites of involvement are: sacrococcygeal area, spheno-occipital area, and the cervico-thoraco-lumbar spine. Microscopically, chordomas are composed of cells that form cords and lobules, separated by mucoid intercellular tissue. Some of the cells are large (physaliphorous) and have vacuolated cytoplasm and prominent vesicular nuclei. Other tumor cells are small with small nuclei without visible nucleoli. Chordomas tend to recur and may metastasize. The most common sites of metastasis are skin and bone.
[Source: NCI Thesaurus C2947]
Chordoma (morphologic abnormality)[accessedResource: DOID:3302][accessDate: 2009-11-30]
MSH:D002817
A malignant tumor arising from the embryonic remains of the notochord. It is also called chordocarcinoma, chordoepithelioma, and notochordoma. (Dorland, 27th ed)[accessedResource: MSH:D002817][accessDate: 2009-11-30]
notochordoma[accessedResource: DOID:3302][accessDate: 2009-11-30]
James Malone
chordoma
GeneRIF:16288985
BioportalImporter v.1.2
James Malone
Ele Holloway
A7
MDAMB415
James Malone
James Malone
number of injections
The scalar number of injections administered to a material or organism.
MAT:0000207
FBbt:00005137
Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia).[accessedResource: FBbt:00005137][accessDate: 2009-11-30]
invertebrate ganglion
James Malone
BioportalImporter v.1.2
http://www.arabidopsis.org/servlets/TairObject?id=1005158801&type=germplasm
CS57777 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158801&type=germplasm
CS57777
James Malone
CHEBI:48354
CHEBI:48354
James Malone
polar solvent
James Malone
CS57512 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311933
http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311933
CS57512
GeneRIF:15002062
GeneRIF:14763917
DOID:11981
morbid obesity
Morbid obesity (disorder)[accessedResource: DOID:11981][accessDate: 2009-11-30]
ICD9:278.01
GeneRIF:16160866
NIFSTD:nlx_dys_20090303
GeneRIF:14764818
GeneRIF:12870165
GeneRIF:15235769
GeneRIF:12032643
The condition of weighing two, three, or more times the ideal weight, so called because it is associated with many serious and life-threatening disorders. In the BODY MASS INDEX, morbid obesity is defined as having a BMI greater than 40.0 kg/m2.[accessedResource: MSH:D009767][accessDate: 2009-11-30]
James Malone
GeneRIF:12883487
GeneRIF:15919838
GeneRIF:12032749
MSH:D009767
Tomasz Adamusiak
GeneRIF:12148087
SNOMEDCT:238136002
Severe obesity[accessedResource: DOID:11981][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12647279
GeneRIF:16253647
GeneRIF:12822042
UACC893
James Malone
Ele Holloway
NT-1
James Malone
Ele Holloway
James Malone
U373
Restrictive cardiomyopathy (disorder)[accessedResource: DOID:397][accessDate: 2009-11-30]
A type of heart disorder referring to the inability of the ventricles to fill with blood because the myocardium (heart muscle) stiffens and looses its flexibility. Causes include replacement of the myocardium with scar tissue, abnormal cellular infiltration of the myocardium, or deposition of a substance (e.g., amyloid) in the myocardium.[accessedResource: NCIt:C62798][accessDate: 2009-11-30]
primary restrictive cardiomyopathy (disorder)[accessedResource: DOID:397][accessDate: 2009-11-30]
restrictive cardiomyopathy
Tomasz Adamusiak
Cardiomyopathy, constrictive[accessedResource: DOID:397][accessDate: 2009-11-30]
DOID:397
BioportalImporter v.1.2
NCIt:C62798
SW837
James Malone
Ele Holloway
A central nervous system macrophage found in the parenchyma of the central nervous system.[accessedResource: CL:0000129][accessDate: 2009-11-30]
BioportalImporter v.1.2
mixed glial cells (predominantly microglia)
James Malone
NIFSTD:sao789292116
BTO:0000078
microglial cell
MERGED DEFINITION:nTARGET DEFINITION: The small, non-neural, interstitial cells of mesodermal origin that form part of the supporting structure of the central nervous system. They are of various forms and may have slender branched processes. They are migratory and act as phagocytes to waste products of nerve tissue. n--------------------nSOURCE DEFINITION: One of the small interstitial phagocytic cells of the microglia.[accessedResource: BTO:0000078][accessDate: 2009-11-30]
Tomasz Adamusiak
CL:0000129
microglia[accessedResource: CL:0000129][accessDate: 2009-11-30]
An instrument that converts a variable electrical current to mechanical vibration of a metallic probe. The instrument is used for the lysis of cells, the mixing of compounds or solutions, or to create emulsions.[accessedResource: OBI_0400114][accessDate: 2009-11-30]
sonicator
OBI_0400114
MO_477
A sonicator is an instrument that converts a variable electrical current to mechanical vibration of a metalic probe. The instrument is used for the lysis of cells, the mixing of compounds or solutions, or to create emulsions. [accessedResource: http://purl.obolibrary.org/obo/OBI_0400114][accessDate: 2009-08-12]
James Malone
BioportalImporter v.1.2
Severe Combined Immunodeficiency (SCID) mutant in C57BL6 genetic background mouse strain.
C57BL/6-scid
Tomasz Adamusiak
Jie Zheng
https://www.cbil.upenn.edu/RADQuerier/php/sampleInfo.php?assay_id=10943&&study_id=3144
http://www.arabidopsis.org/servlets/TairObject?id=1005158775&type=germplasm
CS57751
James Malone
CS57751 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158775&type=germplasm
protoplast
CL:0000371
The cell protoplasm after removal of the cell wall.[accessedResource: CL:0000371][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
NCIt:C3272
DOID:962
Neurofibroma NOS (morphologic abnormality)[accessedResource: DOID:962][accessDate: 2009-11-30]
SNOMEDCT:189947001
GeneRIF:14679180
SNOMEDCT:115242003
NIFSTD:birnlex_12604
James Malone
SNOMEDCT:404029005
neurofibroma
GeneRIF:15652750
A moderately firm, benign, encapsulated tumor resulting from proliferation of SCHWANN CELLS and FIBROBLASTS that includes portions of nerve fibers. The tumors usually develop along peripheral or cranial nerves and are a central feature of NEUROFIBROMATOSIS 1, where they may occur intracranially or involve spinal roots. Pathologic features include fusiform enlargement of the involved nerve. Microscopic examination reveals a disorganized and loose cellular pattern with elongated nuclei intermixed with fibrous strands. (From Adams et al., Principles of Neurology, 6th ed, p1016)[accessedResource: MSH:D009455][accessDate: 2009-11-30]
Neurofibroma (disorder)[accessedResource: DOID:962][accessDate: 2009-11-30]
MSH:D009455
BioportalImporter v.1.2
SNOMEDCT:89084002
Neurofibroma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:962][accessDate: 2009-11-30]
Neurofibromas[accessedResource: DOID:962][accessDate: 2009-11-30]
An intraneural or extraneural neoplasm arising from nerve tissues and neural sheaths. It is composed of perineurial-like fibroblasts and Schwann cells. It usually presents as a localized cutaneous lesion and less often as a circumscribed peripheral nerve mass. Patients with neurofibromatosis type 1 present with multiple masses. Neurofibromas which arise from major nerves and plexiform neurofibromas are precursor lesions to malignant peripheral nerve sheath tumors.[accessedResource: NCIt:C3272][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
A carbotricyclic compound that has formula C22H25NO6.[accessedResource: CHEBI:23359][accessDate: 2009-11-30]
colchicine
N-(1,2,3,10-tetramethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl)acetamide[accessedResource: CHEBI:23359][accessDate: 2009-11-30]
CHEBI:23359
Tomasz Adamusiak
FMAID:5888
BioportalImporter v.1.2
dorsal root ganglion
SAEL:30
WBbt:0005189
Ganglion spinalis[accessedResource: FMAID:5888][accessDate: 2009-11-30]
NIFSTD:birnlex_2596
EMAPA:18372
EMAPA:16668
MA:0000232
EVM:2000213
ZFA:0000200
Spinal ganglion[accessedResource: FMAID:5888][accessDate: 2009-11-30]
MAT:0000162
EHDAA:2899
James Malone
TAO:0000200
NCI Metathesaurus: C0085485
James Malone
Pectobacterium carotovorum infection
Erwinia carotovora infection
James Malone
Ele Holloway
SKMEL3
James Malone
Ele Holloway
ACHN
FBdv:00005317
EVM:2990009
MAT:0000063
WBIs:0000010
XAO:1000005
BioportalImporter v.1.2
James Malone
gastrulating mbryo[accessedResource: MAT:0000063][accessDate: 2009-11-30]
gastrula[accessedResource: MAT:0000063][accessDate: 2009-11-30]
gastrula stage
pyrethroid ester insecticide
CHEBI:39116
CHEBI:39116
James Malone
Detroit562
James Malone
Ele Holloway
SALK_049497
Germplasm:4652085
James Malone
SALK_049497 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=germplasm&id=4652085
Was originally considered to be a breast cancer cell line but has since been identified as a melanoma cell line.
James Malone
MDAMB435
TAO:0000282
XAO:0000095
James Malone
BioportalImporter v.1.2
ZFA:0000034
MAT:0000249
a line of neuroblasts along the sides of fish and amphibia that detect vibrations and pressure changes[accessedResource: MAT:0000249][accessDate: 2009-11-30]
AAO:0000269
MFO:0003620
lateral line system
SNOMEDCT:200996000
SNOMEDCT:200955003
James Malone
ICD9:696
psoriasis
ICD9:696.1
SNOMEDCT:200997009
BioportalImporter v.1.2
ICD9:696.8
DOID:8893
ICD9:696.5
ITM-ST
James Malone
Ele Holloway
ul[accessedResource: UO:0000101][accessDate: 2009-11-30]
UO:0000101
µl
A volume unit which is equal to one millionth of a liter or 10^[-6] L.[accessedResource: UO:0000101][accessDate: 2009-11-30]
microliter
A microliter is a volume unit which is equal to one millionth of a liter or 10^-6 L.
Jie Zheng
James Malone
Tomasz Adamusiak
BioportalImporter v.1.2
MO_926
http://www.arabidopsis.org/servlets/TairObject?id=1005158653&type=germplasm
CS57629
James Malone
CS57629 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158653&type=germplasm
ITM-E6E7
James Malone
Ele Holloway
SM1
James Malone
Ele Holloway
James Malone
Ele Holloway
U266B1
GeneRIF:15292466
GeneRIF:14713387
GeneRIF:15070960
GeneRIF:15111497
GeneRIF:12882938
GeneRIF:16204364
GeneRIF:15472174
GeneRIF:15448103
GeneRIF:14742836
GeneRIF:12436346
GeneRIF:16005429
GeneRIF:15340111
GeneRIF:15919838
GeneRIF:12037740
GeneRIF:15936463
GeneRIF:14642613
GeneRIF:13129857
GeneRIF:12393670
GeneRIF:15979049
GeneRIF:15845877
GeneRIF:12466947
GeneRIF:16167150
GeneRIF:15841306
GeneRIF:15978107
GeneRIF:12401709
GeneRIF:11739396
GeneRIF:15897474
GeneRIF:15635487
GeneRIF:12086965
GeneRIF:11896485
GeneRIF:12429884
GeneRIF:15806395
GeneRIF:15780823
GeneRIF:15616040
GeneRIF:11816701
GeneRIF:12720538
GeneRIF:12424252
GeneRIF:15070774
GeneRIF:15472203
GeneRIF:15323067
GeneRIF:12529499
GeneRIF:16123197
GeneRIF:15281018
GeneRIF:15126243
GeneRIF:12399252
GeneRIF:9205417
GeneRIF:15889232
ICD9:278.00
GeneRIF:15867334
GeneRIF:14504270
GeneRIF:12805399
GeneRIF:15009470
GeneRIF:12488352
GeneRIF:12634434
GeneRIF:15946750
GeneRIF:12429880
GeneRIF:15076153
GeneRIF:14602788
GeneRIF:15806598
GeneRIF:12597523
GeneRIF:16030156
GeneRIF:15367397
GeneRIF:12856128
GeneRIF:12660878
GeneRIF:12045256
GeneRIF:12869354
GeneRIF:16092047
GeneRIF:15601967
GeneRIF:12658019
GeneRIF:12193546
GeneRIF:15254878
GeneRIF:15369797
GeneRIF:14525909
GeneRIF:15942768
GeneRIF:12375583
GeneRIF:12524228
GeneRIF:16046411
GeneRIF:15795809
GeneRIF:12899679
GeneRIF:12791674
GeneRIF:15955385
GeneRIF:16180331
GeneRIF:12133430
GeneRIF:15795426
GeneRIF:12765968
GeneRIF:14646408
GeneRIF:15731326
Tomasz Adamusiak
GeneRIF:15331533
GeneRIF:14715842
GeneRIF:15870101
GeneRIF:15930442
Obese (finding)[accessedResource: DOID:9970][accessDate: 2009-11-30]
GeneRIF:14993225
GeneRIF:15355432
GeneRIF:16222046
GeneRIF:15114524
GeneRIF:14663468
GeneRIF:12075569
GeneRIF:16054046
GeneRIF:12364441
GeneRIF:16200066
GeneRIF:12690079
GeneRIF:16048795
GeneRIF:15292306
BioportalImporter v.1.2
GeneRIF:12499395
GeneRIF:12519856
GeneRIF:15536594
GeneRIF:15292322
GeneRIF:15090636
GeneRIF:12603007
GeneRIF:15864530
GeneRIF:12968669
GeneRIF:12435081
GeneRIF:15677498
GeneRIF:15240652
GeneRIF:12488961
GeneRIF:12033496
GeneRIF:12915696
GeneRIF:15055256
GeneRIF:14968297
GeneRIF:15476445
GeneRIF:15939106
GeneRIF:12079879
GeneRIF:16054069
GeneRIF:15789277
GeneRIF:15778720
GeneRIF:15331535
GeneRIF:15070936
GeneRIF:15001632
GeneRIF:12619866
GeneRIF:12925533
GeneRIF:12970296
GeneRIF:15886715
GeneRIF:16135994
GeneRIF:15897476
GeneRIF:15596147
GeneRIF:15588160
GeneRIF:12519848
GeneRIF:12508940
GeneRIF:15181046
GeneRIF:15002062
GeneRIF:12093799
GeneRIF:12083814
GeneRIF:15297289
GeneRIF:15220220
GeneRIF:15193430
GeneRIF:15959417
GeneRIF:15576462
GeneRIF:15798948
GeneRIF:15169894
GeneRIF:12569166
Obesity [Ambiguous][accessedResource: DOID:9970][accessDate: 2009-11-30]
GeneRIF:15972581
GeneRIF:15944845
GeneRIF:12601637
GeneRIF:12217430
GeneRIF:15277448
GeneRIF:14693717
GeneRIF:12050239
GeneRIF:12050272
GeneRIF:15208271
GeneRIF:12213872
GeneRIF:15604363
GeneRIF:11866034
GeneRIF:15550470
GeneRIF:15834545
GeneRIF:15533384
GeneRIF:15336575
GeneRIF:12490667
GeneRIF:14660752
GeneRIF:12788932
GeneRIF:12529498
GeneRIF:14674682
GeneRIF:15063110
GeneRIF:14657411
GeneRIF:14726256
GeneRIF:11890967
GeneRIF:12829658
GeneRIF:11941369
GeneRIF:12055326
obesity
GeneRIF:15811564
GeneRIF:12767044
GeneRIF:12053815
GeneRIF:14742837
GeneRIF:11872365
GeneRIF:15042014
GeneRIF:12540600
GeneRIF:15466016
GeneRIF:12855752
GeneRIF:16054054
GeneRIF:12888635
GeneRIF:12925701
GeneRIF:15166310
GeneRIF:15051828
GeneRIF:14660566
GeneRIF:12006640
GeneRIF:14693721
GeneRIF:15878965
SNOMEDCT:414915002
GeneRIF:15654325
GeneRIF:16224049
GeneRIF:15292330
GeneRIF:14746672
GeneRIF:15613432
GeneRIF:12949354
GeneRIF:15916056
GeneRIF:12920182
GeneRIF:15660115
GeneRIF:12765950
GeneRIF:15156315
GeneRIF:11956156
GeneRIF:15797871
Obesity NOS[accessedResource: DOID:9970][accessDate: 2009-11-30]
GeneRIF:16030142
GeneRIF:12574803
GeneRIF:15365617
GeneRIF:15919794
GeneRIF:12086946
GeneRIF:14671185
GeneRIF:15985479
GeneRIF:12609752
GeneRIF:15181539
GeneRIF:16102992
GeneRIF:15563274
GeneRIF:12728641
GeneRIF:11829746
GeneRIF:15063799
GeneRIF:15910756
GeneRIF:12865257
GeneRIF:11718682
GeneRIF:12226142
GeneRIF:15685173
GeneRIF:15855349
GeneRIF:15220187
GeneRIF:12660883
GeneRIF:15044674
GeneRIF:15087473
GeneRIF:12730403
GeneRIF:15862893
GeneRIF:15070922
GeneRIF:15292320
GeneRIF:12531492
GeneRIF:12101250
GeneRIF:16288749
A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY).[accessedResource: MSH:D009765][accessDate: 2009-11-30]
GeneRIF:15601970
GeneRIF:12843170
GeneRIF:12032748
GeneRIF:12910269
GeneRIF:12483461
GeneRIF:12951617
GeneRIF:12769595
GeneRIF:15337759
GeneRIF:12429872
GeneRIF:16166222
GeneRIF:15231997
GeneRIF:12810555
GeneRIF:15181048
GeneRIF:12133431
GeneRIF:12765952
GeneRIF:12163041
GeneRIF:16021472
GeneRIF:16027245
SNOMEDCT:414916001
GeneRIF:15034227
GeneRIF:15382608
GeneRIF:12447443
GeneRIF:12529491
GeneRIF:12189588
GeneRIF:15583845
GeneRIF:12032760
GeneRIF:12161541
GeneRIF:12824951
GeneRIF:14600075
GeneRIF:15314024
GeneRIF:15314181
GeneRIF:15198934
GeneRIF:12788860
GeneRIF:12161058
GeneRIF:12900437
GeneRIF:12860835
GeneRIF:14567496
GeneRIF:16222047
Obesity, unspecified[accessedResource: DOID:9970][accessDate: 2009-11-30]
GeneRIF:12530526
NIFSTD:nlx_dys_20090302
GeneRIF:12365916
GeneRIF:11996962
GeneRIF:12552573
GeneRIF:12727947
GeneRIF:11800057
GeneRIF:15518421
GeneRIF:15168018
GeneRIF:12385894
GeneRIF:15102885
GeneRIF:15864349
GeneRIF:12540594
GeneRIF:12716769
GeneRIF:15869602
GeneRIF:15520868
GeneRIF:15048662
GeneRIF:12097321
GeneRIF:14970363
GeneRIF:12402973
GeneRIF:15037865
GeneRIF:15223990
GeneRIF:12484512
GeneRIF:12746756
GeneRIF:15191885
GeneRIF:15123613
GeneRIF:15823758
GeneRIF:12851317
James Malone
GeneRIF:15220914
GeneRIF:15994342
GeneRIF:14627764
GeneRIF:15769985
GeneRIF:15010337
GeneRIF:15070954
GeneRIF:12370125
GeneRIF:15598678
GeneRIF:12734779
GeneRIF:16186392
GeneRIF:12960041
GeneRIF:15743038
GeneRIF:14739355
GeneRIF:12882843
GeneRIF:14701677
GeneRIF:15448102
GeneRIF:15533361
GeneRIF:12175706
GeneRIF:11923308
GeneRIF:15494612
GeneRIF:15024085
GeneRIF:15382611
GeneRIF:15292348
GeneRIF:11912547
GeneRIF:15905321
GeneRIF:12031976
GeneRIF:15467829
GeneRIF:11791158
GeneRIF:15579796
GeneRIF:15601832
GeneRIF:12663465
GeneRIF:15735230
GeneRIF:16186414
GeneRIF:15854142
GeneRIF:15386812
GeneRIF:15331532
GeneRIF:12213628
GeneRIF:12690102
GeneRIF:12213908
GeneRIF:12401727
GeneRIF:15298982
GeneRIF:12855762
GeneRIF:12660874
GeneRIF:14671186
GeneRIF:12507421
GeneRIF:11970899
GeneRIF:12177411
GeneRIF:14747205
GeneRIF:14747301
GeneRIF:16186410
GeneRIF:12364457
GeneRIF:15653680
GeneRIF:12409311
GeneRIF:12161552
GeneRIF:12086939
GeneRIF:14642615
GeneRIF:12902351
GeneRIF:15889231
GeneRIF:14551151
GeneRIF:15941924
GeneRIF:14707164
GeneRIF:15855321
GeneRIF:15522943
GeneRIF:14715869
GeneRIF:15070752
GeneRIF:12353079
GeneRIF:15181040
GeneRIF:11821707
GeneRIF:14625134
GeneRIF:12582011
GeneRIF:15919839
GeneRIF:14722031
GeneRIF:14764817
GeneRIF:15678704
GeneRIF:15897480
GeneRIF:16249436
GeneRIF:12068290
GeneRIF:15292352
GeneRIF:12642576
GeneRIF:12855749
GeneRIF:12387862
MSH:D009765
GeneRIF:15500001
GeneRIF:15770500
GeneRIF:12746327
GeneRIF:15637293
GeneRIF:15928242
GeneRIF:15919834
GeneRIF:15919835
GeneRIF:15746153
GeneRIF:15248831
GeneRIF:15983230
GeneRIF:12165561
GeneRIF:15890776
GeneRIF:14747283
GeneRIF:15334374
GeneRIF:15331564
ICD9:278.0
GeneRIF:12756299
GeneRIF:12480555
GeneRIF:14642408
GeneRIF:12739015
GeneRIF:12213871
GeneRIF:12865337
GeneRIF:15277400
GeneRIF:15845623
GeneRIF:14759071
GeneRIF:11739957
GeneRIF:15271881
GeneRIF:12376184
GeneRIF:14657196
GeneRIF:12075576
GeneRIF:12829631
Obesity (disorder)[accessedResource: DOID:9970][accessDate: 2009-11-30]
GeneRIF:12679463
GeneRIF:15220189
GeneRIF:12716767
GeneRIF:15688209
GeneRIF:11972291
GeneRIF:16260612
GeneRIF:15538935
GeneRIF:11882520
GeneRIF:14715497
GeneRIF:11882596
GeneRIF:15315911
GeneRIF:12032749
GeneRIF:15797955
GeneRIF:15677759
GeneRIF:15625086
GeneRIF:15620432
GeneRIF:15522935
GeneRIF:11916923
GeneRIF:15459958
GeneRIF:12598526
GeneRIF:12429873
GeneRIF:12634439
GeneRIF:12958061
GeneRIF:12055319
GeneRIF:12861009
GeneRIF:12032642
GeneRIF:12923129
GeneRIF:15070780
GeneRIF:16009937
GeneRIF:15781751
GeneRIF:12161655
GeneRIF:14637275
DOID:9970
GeneRIF:15057669
GeneRIF:14691540
GeneRIF:15920074
GeneRIF:15570174
GeneRIF:11822583
GeneRIF:12099975
GeneRIF:14682470
GeneRIF:15855351
GeneRIF:14683458
GeneRIF:15358131
GeneRIF:15202783
GeneRIF:12160996
GeneRIF:15616037
GeneRIF:12364415
GeneRIF:12885755
GeneRIF:15820771
GeneRIF:15111524
GeneRIF:12727933
GeneRIF:12165748
GeneRIF:12805252
GeneRIF:12730030
GeneRIF:12080444
GeneRIF:15055467
GeneRIF:11738809
GeneRIF:15855322
GeneRIF:16123358
GeneRIF:15531738
GeneRIF:12649573
GeneRIF:12032637
GeneRIF:16123374
GeneRIF:12869545
GeneRIF:15923630
GeneRIF:12145151
GeneRIF:12716739
GeneRIF:12750152
GeneRIF:14673524
GeneRIF:15001633
GeneRIF:15983201
James Malone
compatible osmolytes
CHEBI:23366
CHEBI:23366
James Malone
CS57515 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311936
http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311936
CS57515
1.9
obsolete_lymphoblastic leukemia MOLT-4
true
James Malone
duplicate of EFO_0001220
KLE
James Malone
Ele Holloway
James Malone
U87
Mitochondrial disease[accessedResource: DOID:700][accessDate: 2009-11-30]
GeneRIF:14506721
Diseases caused by abnormal function of the MITOCHONDRIA. They may be caused by mutations, acquired or inherited, in mitochondrial DNA or in nuclear genes that code for mitochondrial components. They may also be the result of acquired mitochondria dysfunction due to adverse effects of drugs, infections, or other environmental causes.[accessedResource: MSH:D028361][accessDate: 2009-11-30]
James Malone
hyperglycaemia
GeneRIF:15571233
mitochondrial disease/disorder[accessedResource: DOID:700][accessDate: 2009-11-30]
DOID:700
GeneRIF:12111367
GeneRIF:14746906
BioportalImporter v.1.2
mitochondrial disorder
MSH:D028361
SW872
James Malone
Ele Holloway
B6.H2_g7
C57BL/6 congenically expressing H2g7 mouse strain.
PMID:15356126
Tomasz Adamusiak
Jie Zheng
CS57750 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158774&type=germplasm
James Malone
CS57750
http://www.arabidopsis.org/servlets/TairObject?id=1005158774&type=germplasm
secretory cell
Tomasz Adamusiak
CL:0000151
A spectrophotometer is an instrument that measures the intensity of light as a function of the color, or more specifically, the wavelength of light, transmitted by a substance.[accessedResource: OBI_0400115][accessDate: 2009-11-30]
spectrophotometer
OBI_0400115
MO_716
James Malone
BioportalImporter v.1.2
A metal sulfate compound having copper(2+) as the counterion.[accessedResource: CHEBI:23414][accessDate: 2009-11-30]
copper(II) sulfate[accessedResource: CHEBI:23414][accessDate: 2009-11-30]
CHEBI:23414
BioportalImporter v.1.2
copper(2+) sulfate
body ganglion
WBbt:0005332
TAO:0001573
James Malone
BioportalImporter v.1.2
trunk ganglion[accessedResource: MAT:0000344][accessDate: 2009-11-30]
GeneRIF:15644444
GeneRIF:12154078
GeneRIF:15328517
GeneRIF:14663483
GeneRIF:11807986
DOID:769
GeneRIF:12185581
GeneRIF:12557224
GeneRIF:15930276
GeneRIF:12118090
GeneRIF:12438307
NIFSTD:birnlex_12631
GeneRIF:16177824
GeneRIF:11861392
A neuroblastic tumor characterized by the presence of neuroblastic cells, the absence of ganglion cells, and the absence of a prominent Schwannian stroma formation.[accessedResource: NCIt:C3270][accessDate: 2009-11-30]
GeneRIF:16125842
GeneRIF:16051641
GeneRIF:15849504
Neuroblastoma NOS (morphologic abnormality)[accessedResource: DOID:769][accessDate: 2009-11-30]
Tomasz Adamusiak
GeneRIF:15375504
GeneRIF:16092940
GeneRIF:14745549
GeneRIF:12031683
GeneRIF:12916719
GeneRIF:12829373
(Neuroblastoma NOS) or (sympathicoblastoma)[accessedResource: DOID:769][accessDate: 2009-11-30]
GeneRIF:11877677
GeneRIF:12209604
GeneRIF:11737230
GeneRIF:12545167
GeneRIF:15607966
GeneRIF:15322424
GeneRIF:12808116
GeneRIF:12576454
GeneRIF:12962147
GeneRIF:12598334
GeneRIF:15015775
GeneRIF:12239177
GeneRIF:15547663
GeneRIF:12884264
GeneRIF:11877670
GeneRIF:15741235
GeneRIF:16228012
GeneRIF:15168079
NCIt:C3270
James Malone
GeneRIF:15136145
GeneRIF:11836564
GeneRIF:15280446
GeneRIF:14654552
SNOMEDCT:87364003
GeneRIF:14995074
GeneRIF:12907629
GeneRIF:15166121
GeneRIF:15827327
GeneRIF:11744098
GeneRIF:11870543
GeneRIF:16091745
GeneRIF:13679866
A common neoplasm of early childhood arising from neural crest cells in the sympathetic nervous system, and characterized by diverse clinical behavior, ranging from spontaneous remission to rapid metastatic progression and death. This tumor is the most common intraabdominal malignancy of childhood, but it may also arise from thorax, neck, or rarely occur in the central nervous system. Histologic features include uniform round cells with hyperchromatic nuclei arranged in nests and separated by fibrovascular septa. Neuroblastomas may be associated with the opsoclonus-myoclonus syndrome. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, pp2099-2101; Curr Opin Oncol 1998 Jan;10(1):43-51)[accessedResource: MSH:D009447][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15488758
GeneRIF:12675130
GeneRIF:15882878
GeneRIF:12647219
GeneRIF:12629151
GeneRIF:15240516
GeneRIF:15117961
GeneRIF:12174591
GeneRIF:15650242
GeneRIF:16232196
GeneRIF:15218241
GeneRIF:12964007
neuroblastoma
GeneRIF:15486895
GeneRIF:11705866
GeneRIF:14719101
GeneRIF:12629521
GeneRIF:15719172
GeneRIF:12888911
GeneRIF:15518890
GeneRIF:12593854
GeneRIF:15514946
Neuroblastoma (Schwannian Stroma-Poor)[accessedResource: DOID:769][accessDate: 2009-11-30]
Neuroblastoma (morphologic abnormality)[accessedResource: DOID:769][accessDate: 2009-11-30]
GeneRIF:15994346
MSH:D009447
GeneRIF:15083193
GeneRIF:15316056
GeneRIF:16098972
GeneRIF:15004408
GeneRIF:15998644
GeneRIF:15024693
GeneRIF:14645238
GeneRIF:15448191
GeneRIF:11928813
GeneRIF:14724587
GeneRIF:15516980
GeneRIF:12163469
GeneRIF:12085233
GeneRIF:12672031
GeneRIF:11782392
GeneRIF:16007146
GeneRIF:14988008
GeneRIF:16166307
GeneRIF:15618969
GeneRIF:11859407
GeneRIF:12717420
GeneRIF:11881792
SNOMEDCT:269507008
GeneRIF:15735700
SKMEL1
James Malone
Ele Holloway
ZFS:0000018
gastrula germ-ring
James Malone
James Malone
CHEBI:48218
CHEBI:48218
antiseptic drug
AGS
James Malone
Ele Holloway
NCI Metathesaurus: C0038404
Enterococcus faecalis infection
James Malone
chordotonal organ
James Malone
BioportalImporter v.1.2
Chordotonal organs are arthropod sensory structures consisting of special sensilla called the scolopidia, which are mechano-transducers and respond mainly to stretch or flexion. In insects, they consist of bundles of internal sensilla, each of which has a cap cell, an enveloping cell and one or more sense cells. The distal end of the organ is usually attached to the cuticle of the body wall, marked by a pit, a thickened disc or a nodule of chitin, and the base of the organ is connected with the hypodermis, often by a special ligament.[accessedResource: FBbt:00005215][accessDate: 2009-11-30]
An auditory and vibration detector in insects[accessedResource: MAT:0000209][accessDate: 2009-11-30]
MAT:0000209
FBbt:00005215
James Malone
BioportalImporter v.1.2
A flower cluster with a definite arrangement.[accessedResource: BTO:0000628][accessDate: 2009-11-30]
PO:0009049
BTO:0000628
inflorescence
James Malone
MDAMB436
CS57630 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158654&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158654&type=germplasm
CS57630
James Malone
Tomasz Adamusiak
James Malone
A/J is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/000646.html
A/J
http://jaxmice.jax.org/strain/000646.html
NIFSTD:birnlex_577
NCIt:C55427
James Malone
memory impairment
James Malone
A protocol factor is an experimental factor which describes factors that describe the protocol design of an experiment.
obsolete_protocol factor
synonymous with protocol
true
dl[accessedResource: UO:0000209][accessDate: 2009-11-30]
UO:0000209
Jie Zheng
A deciliter is a volume unit which is equal to one tenth of a liter or 10^-1 L.
deciliter
BioportalImporter v.1.2
MO_624
James Malone
Tomasz Adamusiak
A volume unit which is equal to one tenth of a liter or 10^[-1] L.[accessedResource: UO:0000209][accessDate: 2009-11-30]
ITM-E6E7-ST
James Malone
Ele Holloway
THP1
James Malone
THP-1
CL:0000023
oocyte
Tomasz Adamusiak
CHEBI:23530
CHEBI:23530
James Malone
cytokinins
HTL96012
BTO:0001861
BxPC-3
James Malone
Ele Holloway
BxPC3
Tomasz Adamusiak
NIFSTD:sao196989303
PATO:0000918
NIFSTD:birnlex_2391
A volume is a size quality which describes the amount of 3-dimensional space an object occupies.
A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.[accessedResource: PATO:0000918][accessDate: 2009-11-30]
BioportalImporter v.1.2
volume
James Malone
James Malone
http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311941
CS57520
CS57520 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311941
Toledo
James Malone
Ele Holloway
Genetic traits are small inherited parts of the phenotype of an organism
genetic trait
James Malone
N-[amino(imino)methyl]-N-methylglycine[accessedResource: CHEBI:16919][accessDate: 2009-11-30]
BioportalImporter v.1.2
creatine
CHEBI:16919
A glycine derivative that has formula C4H9N3O2.[accessedResource: CHEBI:16919][accessDate: 2009-11-30]
left ventricular noncompaction
Tomasz Adamusiak
SNOMEDCT:427608000
Tomasz Adamusiak
Jie Zheng
C57Bl/6 derived nonobese diabetic (NOD) mouse strain.
https://www.cbil.upenn.edu/RADQuerier/php/displayStudy.php?study_id=2424
NOD.B6
James Malone
CS57743 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158767&type=germplasm
CS57743
http://www.arabidopsis.org/servlets/TairObject?id=1005158767&type=germplasm
James Malone
neural stem progenitor cell
neuronal stem cell
CL:0000047
FBbt:00005568
embryonic antennal sense organ
James Malone
James Malone
BioportalImporter v.1.2
OBI_0400116
MO_854
thermal cycler
An instrument that is capable of repeatedly altering and maintaining specific temperatures for defined periods of time.[accessedResource: OBI_0400116][accessDate: 2009-11-30]
James Malone
gastrula bud
ZFS:0000022
James Malone
head ganglion
cranial ganglia
BTO:0000106
cranial ganglion
James Malone
Ele Holloway
SKLMS1
An anlage is a tissue modifier describing some tissue which precedes something other, such as a precursor or forerunner for a more mature structure. For example, the stomach anlage.
anlage
James Malone
stomach anlage
MAT:0000478
CS57770 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158794&type=germplasm
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158794&type=germplasm
CS57770
cranium[accessedResource: MAT:0000149][accessDate: 2009-11-30]
MAT:0000149
James Malone
ZFA:0000737
obsolete_craniofacial skeleton bone
Subdivision of skeletal system which consists of the skeleton of the head and its joints.[accessedResource: FMAID:46565][accessDate: 2009-11-30]
TAO:0001424
true
Synonym with cranium, use cranium instead.
AAO:0000109
FMAID:87596
BioportalImporter v.1.2
FMAID:46565
EMAPA:17680
1.8
chondrocranium[accessedResource: MAT:0000149][accessDate: 2009-11-30]
EHDAA:6029
MA:0000316
James Malone
CHEBI:38870
inhalation anaesthetic
CHEBI:38870
CS57627
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158651&type=germplasm
CS57627 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158651&type=germplasm
Merged plan specification and protocol and made synonymous hence this class is redundant.
true
obsolete_protocol
James Malone
Ele Holloway
JEG3
GeneRIF:12351404
MSH:D015464
chronic myeloid leukaemia[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:15556610
GeneRIF:11861294
GeneRIF:14586403
GeneRIF:15583852
Myeloid leukemia, chronic[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:12144533
GeneRIF:15213099
GeneRIF:15716990
GeneRIF:12576428
chronic myelogenous leukemia, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:8552][accessDate: 2009-11-30]
CML[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:15621754
GeneRIF:12408765
GeneRIF:15790787
GeneRIF:11937267
chronic myelogenous leukemia
GeneRIF:12505259
GeneRIF:12740446
GeneRIF:12393722
BioportalImporter v.1.2
GeneRIF:15167915
GeneRIF:12130516
GeneRIF:15481444
GeneRIF:15388581
CML - chronic Myelogenous Leukemia[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:12734675
ICD9:205.1
DOID:8552
GeneRIF:14523459
GeneRIF:15626746
1.4
GeneRIF:14656881
GeneRIF:12576338
GeneRIF:15676212
GeneRIF:11830496
GeneRIF:15735728
James Malone
Clonal hematopoetic disorder caused by an acquired genetic defect in PLURIPOTENT STEM CELLS. It starts in MYELOID CELLS of the bone marrow, invades the blood and then other organs. The condition progresses from a stable, more indolent, chronic phase (LEUKEMIA, MYELOID, CHRONIC PHASE) lasting up to 7 years, to an advanced phase composed of an accelerated phase (LEUKEMIA, MYELOID, ACCELERATED PHASE) and BLAST CRISIS.[accessedResource: MSH:D015464][accessDate: 2009-11-30]
chronic myeloid leukemia NOS (disorder)[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:15569990
GeneRIF:12964051
GeneRIF:16361542
chronic myeloid leukemia, disease (disorder)[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:12821944
GeneRIF:11857309
GeneRIF:15086519
GeneRIF:11939413
GeneRIF:12067477
GeneRIF:15456784
GeneRIF:16052521
A carcinoma originating in the lung. Lung carcinomas usually arise from the epithelium that lines the bronchial tree (bronchogenic carcinomas), and are classified as small cell or non-small cell carcinomas. Non-small cell lung carcinomas are usually adenocarcinomas, squamous cell carcinomas, or large cell carcinomas. Metastatic carcinomas to the lung are also common, and can be difficult to distinguish from primary tumors.[accessedResource: NCIt:C4878][accessDate: 2009-11-30]
GeneRIF:12452048
NCIt:C4878
GeneRIF:15782117
GeneRIF:15756594
DOID:3905
lung carcinoma
GeneRIF:12819188
GeneRIF:12162425
Carcinoma of Lung[accessedResource: NCIt:C4878][accessDate: 2009-11-30]
GeneRIF:11844598
BioportalImporter v.1.2
GeneRIF:16125822
GeneRIF:11920544
James Malone
GeneRIF:12581892
GeneRIF:12115568
Cancer of the Lung[accessedResource: NCIt:C4878][accessDate: 2009-11-30]
GeneRIF:16038795
GeneRIF:12021930
Cancer of Lung[accessedResource: NCIt:C4878][accessDate: 2009-11-30]
GeneRIF:15754326
GeneRIF:15041706
GeneRIF:15242764
GeneRIF:15221958
Carcinoma of the Lung[accessedResource: NCIt:C4878][accessDate: 2009-11-30]
GeneRIF:11807786
Lung Cancer[accessedResource: NCIt:C4878][accessDate: 2009-11-30]
B6.Cg-Tg(SOD1-G93A)1Gur/J is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/004435.html
JAX:004435
B6.Cg-Tg(SOD1-G93A)1Gur/J
James Malone
BTO:0000486
fruit
MAT:0000232
PO:0009001
BioportalImporter v.1.2
The mature ovary or ovaries of a seed-bearing plant, together with accessory parts, containing the seeds and occurring in a wide variety of forms.[accessedResource: BTO:0000486][accessDate: 2009-11-30]
James Malone
silique
James Malone
MDAMB453
SNOMEDCT:281170005
arrhythmogenic right ventricular cardiomyopathy
Tomasz Adamusiak
SW780
James Malone
Ele Holloway
A compound or agent that combines with an enzyme in such a manner as to prevent the normal substrate-enzyme combination and the catalytic reaction.[accessedResource: CHEBI:23924][accessDate: 2009-11-30]
CHEBI:23924
CHEBI:23924
James Malone
BioportalImporter v.1.2
enzyme inhibitor
NIFSTD:nifext_171
CL:0000184
pericyte
A slender, contractile, mesenchymal-like cell found in close association with capillary walls. They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells. (From Stedman, 26th ed).[accessedResource: CL:0000184][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
James Malone
U266
James Malone
Ele Holloway
TT
James Malone
CS57521
http://www.arabidopsis.org/servlets/TairObject?type=germplasm&id=1005152522
CS57521 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=germplasm&id=1005152522
A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.[accessedResource: UO:0000097][accessDate: 2009-11-30]
cubic centimeter
Jie Zheng
James Malone
Tomasz Adamusiak
UO:0000097
MO_834
BioportalImporter v.1.2
cc[accessedResource: UO:0000097][accessDate: 2009-11-30]
A cubic centimeter is a volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
cm^3[accessedResource: UO:0000097][accessDate: 2009-11-30]
SCN2.2
James Malone
Ele Holloway
gastrula 75%-epiboly
ZFS:0000020
James Malone
genetic modification
true
Tomasz Adamusiak
Jie Zheng
The genetic modification introduced into the organism from which the biomaterial was derived. Examples of genetic modification include specification of a transgene or the gene knocked-out or details of transient transfection.
MO_927
Examples of genetic modification include specification of a transgene or the gene knocked-out or details of transient transfection
James Malone
BioportalImporter v.1.2
An instrument which removes liquid by the application of negative pressure, i.e. vacuum.[accessedResource: OBI_0400117][accessDate: 2009-11-30]
vacuum dryer
OBI_0400117
MO_696
primary cortex neuron
Tomasz Adamusiak
CL:0000540
The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.[accessedResource: CL:0000540][accessDate: 2009-11-30]
NIFSTD:sao1417703748
James Malone
nerve cell[accessedResource: CL:0000540][accessDate: 2009-11-30]
A grayish or reddish granular cell with specialized processes that is the fundamental functional unit of nervous tissue.[accessedResource: BTO:0000938][accessDate: 2009-11-30]
BTO:0000938
BioportalImporter v.1.2
neuron
https://www.cbil.upenn.edu/RADQuerier/php/displayStudy.php?study_id=2424
Tomasz Adamusiak
Jie Zheng
NOD.B10
C57Bl/10 derived nonobese diabetic (NOD) mouse strain.
James Malone
CS57742
CS57742 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158766&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158766&type=germplasm
James Malone
BioportalImporter v.1.2
cyfluthrin
cyano(4-fluoro-3-phenoxyphenyl)methyl 3-(2,2-dichloroethenyl)-2,2-dimethylcyclopropanecarboxylate[accessedResource: CHEBI:4034][accessDate: 2009-11-30]
CHEBI:4034
http://www.arabidopsis.org/servlets/TairObject?id=1005158764&type=germplasm
CS57740 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158764&type=germplasm
CS57740
James Malone
James Malone
Ele Holloway
SJSA1
A ganglion on the sensory root of the fifth cranial nerve, situated in a cleft within the dura mater (trigeminal cave) on the anterior surface of the petrous portion of the temporal bone, and giving off the ophthalmic and maxillary and part of the mandibular nerve; it contains the cells of origin of most of the sensory fibers of the trigeminal nerve.[accessedResource: BTO:0001231][accessDate: 2009-11-30]
BTO:0001231
James Malone
EV:0100491
FMAID:52618
BioportalImporter v.1.2
Semilunar ganglion[accessedResource: FMAID:52618][accessDate: 2009-11-30]
TAO:0000295
MA:0001080
MAT:0000511
XAO:0000428
Gasserian ganglion[accessedResource: FMAID:52618][accessDate: 2009-11-30]
trigeminal ganglion
GeneRIF:15994952
DOID:2526
prostate cancer
GeneRIF:12115574
Adenocarcinoma of Prostate[accessedResource: NCIt:C2919][accessDate: 2009-11-30]
GeneRIF:12664577
GeneRIF:15131044
GeneRIF:15073126
James Malone
GeneRIF:14612932
GeneRIF:15041704
GeneRIF:16324197
Adenocarcinoma of the Prostate[accessedResource: NCIt:C2919][accessDate: 2009-11-30]
GeneRIF:15256061
An adenocarcinoma arising from the prostate gland. It is one of the most common malignant tumors afflicting men. The majority of adenocarcinomas arise in the peripheral zone and a minority occurs in the central or the transitional zone of the prostate gland. Grading of prostatic adenocarcinoma predicts disease progression and correlates with survival. Several grading systems have been proposed, of which the Gleason system is the most commonly used. Gleason sums of 2 to 4 represent well-differentiated disease, 5 to 7 moderately differentiated disease and 8 to 10 poorly differentiated disease. Prostatic-specific antigen (PSA) serum test is widely used as a screening test for the early detection of prostatic adenocarcinoma. Treatment options include radical prostatectomy, radiation therapy, androgen ablation and cryotherapy. Watchful waiting or surveillance alone is an option for older patients with low-grade or low-stage disease.
[Source: NCI Thesaurus C2919]
GeneRIF:12865322
GeneRIF:12433721
GeneRIF:15381379
GeneRIF:11550208
GeneRIF:11813207
SNOMEDCT:399490008
BioportalImporter v.1.2
GeneRIF:11023533
GeneRIF:15146458
GeneRIF:11790779
prostate adenocarcinoma
GeneRIF:15665279
GeneRIF:15138198
GeneRIF:14559809
Adenocarcinoma of prostate (disorder)[accessedResource: DOID:2526][accessDate: 2009-11-30]
NCIt:C2919
GeneRIF:15609334
James Malone
gastrula 90%-epiboly
ZFS:0000021
James Malone
Ele Holloway
ITV
The cord of nervous tissue that extends from the brain lengthwise along the back in the vertebral canal, gives off the pairs of spinal nerves, carries impulses to and from the brain, and serves as a center for initiating and coordinating many reflex acts.[accessedResource: BTO:0001279][accessDate: 2009-11-30]
MFO:0002860
MA:0000216
spinal cord
XAO:0000020
EV:0100316
EMAPA:17577
TAO:0000075
FMAID:7647
MAT:0000183
SAEL:100
BioportalImporter v.1.2
James Malone
Segment of neuraxis that has as its parts gray matter and white matter that surround the central canal. Examples: There is only one spinal cord.[accessedResource: FMAID:7647][accessDate: 2009-11-30]
BTO:0001279
ZFA:0000075
EHDAA:2863
A sapphyrin that has formula C24H17N5.[accessedResource: CHEBI:36779][accessDate: 2009-11-30]
CHEBI:36779
sapphyrin
BioportalImporter v.1.2
NCIt:C26788
chronic granulomatous disease
Congenital dysphagocytosis[accessedResource: DOID:3265][accessDate: 2009-11-30]
GeneRIF:15777347
BioportalImporter v.1.2
MSH:D006105
GeneRIF:16138344
A recessive X-linked defect of leukocyte function in which phagocytic cells ingest but fail to digest bacteria, resulting in recurring bacterial infections with granuloma formation.[accessedResource: MSH:D006105][accessDate: 2009-11-30]
James Malone
chronic granulomatous disease (disorder)[accessedResource: DOID:3265][accessDate: 2009-11-30]
GeneRIF:12817011
GeneRIF:11462241
GeneRIF:12073015
GeneRIF:12589359
GeneRIF:15507755
CGD[accessedResource: NCIt:C26788][accessDate: 2009-11-30]
SNOMEDCT:387759001
DOID:3265
GeneRIF:12213046
Congenital dysphagocytosis (disorder)[accessedResource: DOID:3265][accessDate: 2009-11-30]
SNOMEDCT:191352003
CS57628 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158652&type=germplasm
James Malone
CS57628
http://www.arabidopsis.org/servlets/TairObject?id=1005158652&type=germplasm
GeneRIF:12666851
GeneRIF:15817609
James Malone
GeneRIF:12144527
SNOMEDCT:190633005
A nutritional condition produced by a deficiency of FOLIC ACID in the diet. Many plant and animal tissues contain folic acid, abundant in green leafy vegetables, yeast, liver, and mushrooms but destroyed by long-term cooking. Alcohol interferes with its intermediate metabolism and absorption. Folic acid deficiency may develop in long-term anticonvulsant therapy or with use of oral contraceptives. This deficiency causes anemia, macrocytic anemia, and megaloblastic anemia. It is indistinguishable from vitamin B 12 deficiency in peripheral blood and bone marrow findings, but the neurologic lesions seen in B 12 deficiency do not occur. (Merck Manual, 16th ed)[accessedResource: MSH:D005494][accessDate: 2009-11-30]
MSH:D005494
DOID:8453
Deficiency of folic acid (disorder)[accessedResource: DOID:8453][accessDate: 2009-11-30]
GeneRIF:16046705
GeneRIF:15068241
Folic acid deficiency (disorder)[accessedResource: DOID:8453][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12887734
Folic Acid Deficiency[accessedResource: DOID:8453][accessDate: 2009-11-30]
folate deficiency
C3H/HeJ is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/000659.html
James Malone
JAX:000659
C3H/HeJ
true
James Malone
1.8
obsolete_THP1
duplicate of EFO_0001253
postcranial axia skelton[accessedResource: MAT:0000148][accessDate: 2009-11-30]
TAO:0000317
axial skeleton
EMAPA:17214
ZFA:0000317
BioportalImporter v.1.2
EHDAA:5049
James Malone
MA:0000308
MAT:0000148
FMAID:71221
SAEL:121
AAO:0000034
*Subdivision of skeleton which consists of the bones of the vertebral column, the thoracic cage and the pelvis.[accessedResource: FMAID:71221][accessDate: 2009-11-30]
CHEBI:38877
CHEBI:38877
James Malone
intravenous anaesthetic
MAT:0000356
tepal
PO:0009033
BTO:0001728
James Malone
A division of the perianth of a flower having a virtually indistinguishable calyx and corolla, as in tulips and lilies.[accessedResource: BTO:0001728][accessDate: 2009-11-30]
BioportalImporter v.1.2
MDAMB468
James Malone
James Malone
Ele Holloway
SW756
Two ganglionated neural plexuses in the gut wall which form one of the three major divisions of the autonomic nervous system. The enteric nervous system innervates the gastrointestinal tract, the pancreas, and the gallbladder. It contains sensory neurons, interneurons, and motor neurons. Thus the circuitry can autonomously sense the tension and the chemical environment in the gut and regulate blood vessel tone, motility, secretions, and fluid transport. The system is itself governed by the central nervous system and receives both parasympathetic and sympathetic innervation.[accessedResource: BTO:0002506][accessDate: 2009-11-30]
TAO:0001155
NIFSTD:birnlex_1166
FMAID:66070
BTO:0002506
James Malone
MA:0000222
BioportalImporter v.1.2
ZFA:0001155
enteric PNS
MAT:0000102
enteric nervous system
Tomasz Adamusiak
BioportalImporter v.1.2
James Malone
A hydroxybenzoic acid that has formula C7H6O3.[accessedResource: CHEBI:16914][accessDate: 2009-11-30]
salicylic acid
2-hydroxybenzoic acid[accessedResource: CHEBI:16914][accessDate: 2009-11-30]
CHEBI:16914
limb skeleton
The hard form of connective tissue that constitutes the majority of the skeleton of most vertebrates; it consists of an organic component (the cells and matrix) and an inorganic, or mineral, component; the matrix contains a framework of collagenous fibers and is impregnated with the mineral component, chiefly calcium phosphate (85 per cent) and calcium carbonate (10 per cent), which imparts the quality of rigidity to bone.[accessedResource: BTO:0000140][accessDate: 2009-11-30]
MAT:0000151
James Malone
BioportalImporter v.1.2
limb bone
MA:0000688
BTO:0000140
ZFA:0000279
XAO:0000057
TAO:0000279
James Malone
presomitic mesoderm
Epigenetic status describes the imprinting state of a sample. E.g. Loss of imprinting occurs in some tumour cells
true
epigenetic status
Loss of imprinting occurs in some tumour cells
prognostic subgroup
A population in which a grouping of subjects in some study grouped on the basis of the probable outcome of some disease e.g. by gene expression, by physiological indicators etc
James Malone
James Malone
chronic progressive external ophthalmoplegia[accessedResource: DOID:12558][accessDate: 2009-11-30]
HP:0000590
PEO syndrome
BioportalImporter v.1.2
progressive external ophthalmoplegia
PEO
Ele Holloway
Progressive external ophthalmoplegia (disorder)[accessedResource: DOID:12558][accessDate: 2009-11-30]
DOID:12558
chronic progressive external ophthalmoplegia [Ambiguous][accessedResource: DOID:12558][accessDate: 2009-11-30]
MAT:0000074
EMAPA:16033
XAO:0000035
BioportalImporter v.1.2
FBdv:00005288
ZFA:0000001
ZFS:0000001
EHDAA:27
zygote[accessedResource: MAT:0000074][accessDate: 2009-11-30]
James Malone
EVM:2990001
MFO:0005280
fertilized egg stage
Org 31710
antiprogestin
NCBITaxon:9913
Bos taurus, commonly named cattle.
cow
James Malone
Bos taurus
Leiomyoma of Corpus Uteri[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
A benign tumor derived from smooth muscle tissue, also known as a fibroid tumor. They rarely occur outside of the UTERUS and the GASTROINTESTINAL TRACT but can occur in the SKIN and SUBCUTANEOUS TISSUE, probably arising from the smooth muscle of small blood vessels in these tissues.[accessedResource: MSH:D007889][accessDate: 2009-11-30]
Uterine leiomyoma[accessedResource: DOID:13223][accessDate: 2009-11-30]
Leiomyoma of the Body of Uterus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
A benign smooth muscle neoplasm arising from the body of the uterus. It is characterized by the presence of spindle cells with cigar-shaped nuclei, interlacing fascicles, and a whorled pattern.[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:11865300
Uterine Body Fibroid[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15051039
GeneRIF:15083381
ICD9:218
GeneRIF:12634633
Fibroid of Uterine Body[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Leiomyoma of the Uterine Body[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Leiomyoma of Uterine Body[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Fibroid of the Corpus Uteri[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15749523
uterine fibroid
GeneRIF:15604209
NCIt:C3434
SNOMEDCT:44598004
GeneRIF:14557488
Leiomyoma of Body of Uterus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
SNOMEDCT:95315005
GeneRIF:15572421
GeneRIF:15972578
Plexiform leiomyoma[accessedResource: DOID:13223][accessDate: 2009-11-30]
GeneRIF:12177782
Fibroid of Body of Uterus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:12215337
GeneRIF:15334541
GeneRIF:15231681
Leiomyoma of Uterine Corpus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15536154
Leiomyoma of the Uterine Corpus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Uterine Corpus Fibroid[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Leiomyoma of uterus, unspecified[accessedResource: DOID:13223][accessDate: 2009-11-30]
Corpus Uteri Leiomyoma[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
An uncommon benign neoplasm arising from the bone. It is characterized by the presence of spindle-shaped or stellate chondrocytes, a lobulated growth pattern, myxoid stroma formation, and sometimes multinucleated giant cells. It has been associated with chromosomal rearrangement of 6q13 and 6q25 bands. The most common clinical symptom is mild, localized pain.
GeneRIF:16009172
Fibroid of Uterine Corpus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:12766905
Fibroid of the Uterine Corpus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15769981
DOID:13223
GeneRIF:15004438
BioportalImporter v.1.2
GeneRIF:14995917
Fibroid of the Body of Uterus[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:12649198
Body of Uterus Leiomyoma[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15474102
GeneRIF:15706419
Corpus Uteri Fibroid[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Fibroid of Corpus Uteri[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Uterine Corpus Leiomyoma[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15322223
GeneRIF:16024248
GeneRIF:12065682
Uterine Body Leiomyoma[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
Uterine leiomyoma NOS (disorder)[accessedResource: DOID:13223][accessDate: 2009-11-30]
GeneRIF:12548199
Body of Uterus Fibroid[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:14632190
Uterine leiomyoma (disorder)[accessedResource: DOID:13223][accessDate: 2009-11-30]
ICD9:218.9
GeneRIF:12594000
GeneRIF:15704521
GeneRIF:12634644
GeneRIF:12097287
Uterine Fibroids[accessedResource: DOID:13223][accessDate: 2009-11-30]
Uterine Corpus Leiomyomata[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:15033949
Fibroid of the Uterine Body[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:11756572
UTERUS FIBROMA[accessedResource: DOID:13223][accessDate: 2009-11-30]
James Malone
SNOMEDCT:189106003
Leiomyoma of the Corpus Uteri[accessedResource: NCIt:C3434][accessDate: 2009-11-30]
GeneRIF:14698203
MSH:D007889
GeneRIF:11788902
BioportalImporter v.1.2
FMA:58342
James Malone
Sclerocorneal junction[accessedResource: FMA:58342][accessDate: 2009-11-30]
corneal limbus
Corneoscleral junction[accessedResource: FMA:58342][accessDate: 2009-11-30]
Limbus of cornea[accessedResource: FMA:58342][accessDate: 2009-11-30]
Corneoscleral Limbus[accessedResource: NCIt:C12823][accessDate: 2009-11-30]
NCIt:C12823
James Malone
Ele Holloway
SW954
The part of the large intestine that extends from the cecum to the rectum.[accessedResource: BTO:0000269][accessDate: 2009-11-30]
ZFA:0000706
BioportalImporter v.1.2
colon
XAO:0000243
EV:0100079
SAEL:22
EMAPA:18939
FMAID:14543
BTO:0000269
James Malone
MA:0000335
The part of the large intestine measured from the cecum to the rectum consisting of ascending, transverse, descending and sigmoid portions. The purpose of the colon is to remove water from digested food prior to excretion.[accessedResource: NCIt:C12382][accessDate: 2009-11-30]
MAP:0000001
NCIt:C33223
BioportalImporter v.1.2
organ of corti
BTO:0001691
James Malone
Spiral Organ of Corti[accessedResource: NCIt:C33223][accessDate: 2009-11-30]
The organ, resting on the basilar membrane in the cochlear duct, that contains the special sensory receptors for hearing; it consists of neuroepithelial hair cells and several types of supporting cells, including the inner and outer pillar cells, inner and outer phalangeal cells, border cells, and Hensen's cells.[accessedResource: BTO:0001691][accessDate: 2009-11-30]
James Malone
Ele Holloway
WIDR
CS57537 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311958
http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311958
CS57537
James Malone
BioportalImporter v.1.2
James Malone
FBbt:00001102
MAT:0000339
BTO:0002328
ventral nerve cord
The pair of closely united ventral longitudinal nerves with their segmental ganglia that is characteristic of many elongate invertebrates (as earthworms).[accessedResource: BTO:0002328][accessDate: 2009-11-30]
larval ventral ganglion[accessedResource: FBbt:00001102][accessDate: 2009-11-30]
.[accessedResource: FBbt:00001102][accessDate: 2009-11-30]
EVM:2990031
fetus
BioportalImporter v.1.2
MAT:0000399
FBdv:0005333
embryo late (growth) stage[accessedResource: MAT:0000399][accessDate: 2009-11-30]
James Malone
EV:0300011
S-[2,3-bis(palmitoyloxy)propyl]-Cys-Ser-Lys-Lys-Lys-Lys
BioportalImporter v.1.2
A diacyl lipopeptide that has formula C65H126N10O12S.[accessedResource: CHEBI:46889][accessDate: 2009-11-30]
CHEBI:46889
S-[2,3-bis(hexadecanoyloxy)propyl]-L-cysteinyl-L-seryl-L-lysyl-L-lysyl-L-lysyl-L-lysine[accessedResource: CHEBI:46889][accessDate: 2009-11-30]
Met5A
James Malone
BioportalImporter v.1.2
MAT:0000150
exoskeleton
James Malone
The outer non-living layer of the integumentary system derived from the epidermis.[accessedResource: FBbt:00004970][accessDate: 2009-11-30]
FBbt:00004970
James Malone
CHEBI:38637
tyrosine kinase inhibitor
CHEBI:38637
James Malone
leaf component
A leaf component is a plant component which is part of a leaf.
Parkinson's disease NOS (disorder)[accessedResource: DOID:14330][accessDate: 2009-11-30]
BioportalImporter v.1.2
Paralysis agitans[accessedResource: DOID:14330][accessDate: 2009-11-30]
Parkinson's disease NOS[accessedResource: DOID:14330][accessDate: 2009-11-30]
James Malone
Parkinson's disease (disorder)[accessedResource: DOID:14330][accessDate: 2009-11-30]
Tomasz Adamusiak
parkinson disease[accessedResource: DOID:14330][accessDate: 2009-11-30]
DOID:14330
Parkinson's disease
Ele Holloway
NIFSTD:birnlex_2098
GeneRIF:15009222
GeneRIF:15970629
SNOMEDCT:313307000
GeneRIF:15342642
GeneRIF:11889467
SNOMEDCT:267593008
GeneRIF:12095917
SNOMEDCT:128613002
GeneRIF:15258581
GeneRIF:14660671
GeneRIF:12185771
GeneRIF:12958597
ICD9:345.8
GeneRIF:15120744
Tomasz Adamusiak
GeneRIF:16007083
GeneRIF:15452324
GeneRIF:15006707
GeneRIF:12435565
GeneRIF:12205640
SNOMEDCT:194491006
GeneRIF:15452306
ICD9:345
James Malone
SNOMEDCT:193025006
GeneRIF:14736855
GeneRIF:15772097
DOID:1826
GeneRIF:16049933
GeneRIF:15254012
GeneRIF:12270687
GeneRIF:15215304
GeneRIF:15026125
GeneRIF:12217514
ICD9:345.9
ICD9:345.80
BioportalImporter v.1.2
GeneRIF:15160397
GeneRIF:12960023
GeneRIF:15979590
GeneRIF:16129091
GeneRIF:15492925
GeneRIF:16091474
GeneRIF:12702713
epilepsy
GeneRIF:15159136
GeneRIF:14985377
GeneRIF:15505175
GeneRIF:15790563
GeneRIF:12086636
SNOMEDCT:193020001
GeneRIF:15637270
GeneRIF:12482897
GeneRIF:12601092
GeneRIF:15483119
GeneRIF:14646589
GeneRIF:15282290
ICD9:345.81
ICD9:345.91
SNOMEDCT:246545002
GeneRIF:12648752
GeneRIF:12773553
GeneRIF:15505174
GeneRIF:12746865
GeneRIF:12875997
GeneRIF:15937479
GeneRIF:15665077
GeneRIF:14984901
GeneRIF:12115687
GeneRIF:12460603
GeneRIF:15571623
GeneRIF:12533622
GeneRIF:15567475
GeneRIF:14597704
ICD9:345.90
GeneRIF:15304595
GeneRIF:12686700
GeneRIF:15288497
GeneRIF:12000122
SNOMEDCT:84757009
GeneRIF:15461680
NIFSTD:birnlex_12718
GeneRIF:16095760
NCIt:C3020
GeneRIF:15115830
Hutchinson-Gilford syndrome (disorder)[accessedResource: DOID:3911][accessDate: 2009-11-30]
DOID:3911
James Malone
GeneRIF:15608054
Progeria (disorder)[accessedResource: DOID:3911][accessDate: 2009-11-30]
Progeria syndrome (disorder) [Ambiguous][accessedResource: DOID:3911][accessDate: 2009-11-30]
progeria syndrome
An abnormal congenital condition, associated with defects in the LAMIN TYPE A gene, which is characterized by premature aging in children, where all the changes of cell senescence occur. It is manifested by premature greying; hair loss; hearing loss (DEAFNESS); cataracts (CATARACT); ARTHRITIS; OSTEOPOROSIS; DIABETES MELLITUS; atrophy of subcutaneous fat; skeletal hypoplasia; elevated urinary HYALURONIC ACID; and accelerated ATHEROSCLEROSIS. Many affected individuals develop malignant tumors, especially SARCOMA.[accessedResource: MSH:D011371][accessDate: 2009-11-30]
Progeria[accessedResource: NCIt:C34951][accessDate: 2009-11-30]
MSH:D011371
Hutchinson Gilford syndrome[accessedResource: DOID:3911][accessDate: 2009-11-30]
GeneRIF:12714972
GeneRIF:12702809
Premature Senility Syndrome[accessedResource: NCIt:C34951][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12768443
SNOMEDCT:238870004
NCIt:C34951
GeneRIF:15342704
Hutchinson-Gilford Disease[accessedResource: NCIt:C34951][accessDate: 2009-11-30]
GeneRIF:12735900
hatching pec-fin
ZFS:0000034
James Malone
ovalbumin
James Malone
NCBITaxon:33090
Viridiplantae are a clade comprising the green algae and land plants.
Viridiplantae
green plants
BTO:0001235
BioportalImporter v.1.2
NCIt:C13047
James Malone
seminiferous tubules
Seminiferous Tubule[accessedResource: NCIt:C13047][accessDate: 2009-11-30]
One of two or three twisted, curved tubules in each lobule of the testis in which spermatozoa develop.[accessedResource: BTO:0001235][accessDate: 2009-11-30]
DOID:6191
BioportalImporter v.1.2
NCIt:C27096
A rare malignant tumor of the liver, the incidence of which is highest in children between 6 and 10 years of age.[accessedResource: NCIt:C27096][accessDate: 2009-11-30]
Undifferentiated sarcoma (morphologic abnormality)[accessedResource: DOID:6191][accessDate: 2009-11-30]
SNOMEDCT:128734000
James Malone
Embryonal sarcoma (morphologic abnormality)[accessedResource: DOID:6191][accessDate: 2009-11-30]
Embryonal Sarcoma[accessedResource: NCIt:C27096][accessDate: 2009-11-30]
SNOMEDCT:59583009
Undifferentiated (Embryonal) Sarcoma[accessedResource: NCIt:C27096][accessDate: 2009-11-30]
undifferentiated sarcoma
hybridization station
James Malone
BioportalImporter v.1.2
OBI_0400111
MO_497
An instrument which is used to maintain the temperature of one or more hybridization_chamber(s) at a defined, constant temperature.[accessedResource: OBI_0400111][accessDate: 2009-11-30]
CS57758 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158782&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158782&type=germplasm
James Malone
CS57758
James Malone
Ele Holloway
SW962
James Malone
cololrectal tumor
DOID:10871
Degenerative changes in the macula lutea of the retina.[accessedResource: MSH:D008268][accessDate: 2009-11-30]
GeneRIF:12742846
GeneRIF:12592048
NIFSTD:birnlex_12812
GeneRIF:15761121
BioportalImporter v.1.2
Amended[accessedResource: DOID:10871][accessDate: 2009-11-30]
GeneRIF:12242346
Age related macular degeneration (disorder) [Ambiguous][accessedResource: DOID:10871][accessDate: 2009-11-30]
SNOMEDCT:302891003
GeneRIF:15111581
GeneRIF:12005165
Senile macular retinal degeneration[accessedResource: DOID:10871][accessDate: 2009-11-30]
GeneRIF:12882809
Tomasz Adamusiak
Senile macular degeneration[accessedResource: DOID:10871][accessDate: 2009-11-30]
GeneRIF:15829498
ICD9:362.50
SNOMEDCT:267718000
MSH:D008268
GeneRIF:14609921
James Malone
GeneRIF:15208270
GeneRIF:15028284
GeneRIF:11919200
GeneRIF:12099691
GeneRIF:14587307
GeneRIF:15761120
GeneRIF:14597045
ARMD[accessedResource: DOID:10871][accessDate: 2009-11-30]
GeneRIF:12902384
GeneRIF:16079201
Macular degeneration (senile) of retina, unspecified[accessedResource: DOID:10871][accessDate: 2009-11-30]
age-related macular degeneration
Age-related macular degeneration (disorder)[accessedResource: DOID:10871][accessDate: 2009-11-30]
GeneRIF:15479453
GeneRIF:12427233
GeneRIF:15761122
Unspecified senile macular degeneration[accessedResource: DOID:10871][accessDate: 2009-11-30]
CS57541 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158565&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158565&type=germplasm
James Malone
CS57541
Duplicate use EFO_0001260
true
James Malone
Ele Holloway
1.8
obsolete_WI38
MM1
James Malone
(2R,6aS,12aS)-8,9-dimethoxy-2-(prop-1-en-2-yl)-1,2,12,12a-tetrahydrochromeno[3,4-b]furo[2,3-h]chromen-6(6aH)-one[accessedResource: CHEBI:28201][accessDate: 2009-11-30]
rotenone
CHEBI:28201
A chromenone that has formula C23H22O6.[accessedResource: CHEBI:28201][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
MO_721
A femtoliter is a volume unit which is equal to 10^-15 L.
Tomasz Adamusiak
A volume unit which is equal to 10^[-12] L.[accessedResource: UO:0000103][accessDate: 2009-11-30]
Jie Zheng
fl
femtoliter
BioportalImporter v.1.2
James Malone
The delicate serous membrane that lines each half of the thorax of mammals and is folded back over the surface of the lung of the same side.[accessedResource: BTO:0001791][accessDate: 2009-11-30]
Pleural Tissue[accessedResource: NCIt:C12469][accessDate: 2009-11-30]
The tissue that lines the wall of the thoracic cavity and the surface of the lungs.[accessedResource: NCIt:C12469][accessDate: 2009-11-30]
James Malone
BTO:0001791
BioportalImporter v.1.2
pleura
NCIt:C12469
pharyngeal nervous system
James Malone
BioportalImporter v.1.2
The nervous system is essentially a biological information highway, and is responsible for controlling all the biological processes and movement in the body, and can also receive information and interpret it via electrical signals which are used in this nervous system. It consists of the Central Nervous System (CNS), essentially the processing area and the Peripheral Nervous System which detects and sends electrical impulses that are used in the nervous system.[accessedResource: BTO:0001484][accessDate: 2009-11-30]
WBbt:0005440
MAT:0000341
BTO:0001484
Drosophila melanogaster strain
Strain or line specific to Drosophila melanogaster
James Malone
oxygen
CHEBI:15379
epiblast cell
CL:0000352
James Malone
epiblast stem cell
James Malone
hatching stage
ZFS:0000033
James Malone
primordial germ cell
CL:0000670
SNOMEDCT:26889001
BioportalImporter v.1.2
GeneRIF:11829483
GeneRIF:14569203
GeneRIF:15950936
NCIt:C27578
Myositis unspecified (disorder)[accessedResource: DOID:633][accessDate: 2009-11-30]
myositis
Myositis NOS[accessedResource: DOID:633][accessDate: 2009-11-30]
ICD9:729.1
Inflammatory disorder of muscle (disorder)[accessedResource: DOID:633][accessDate: 2009-11-30]
GeneRIF:16115818
SNOMEDCT:203110007
Myositis (disorder)[accessedResource: DOID:633][accessDate: 2009-11-30]
MSH:D009220
inflammatory myopathy
James Malone
GeneRIF:12667656
GeneRIF:12742663
Inflammation of a muscle or muscle tissue.[accessedResource: MSH:D009220][accessDate: 2009-11-30]
GeneRIF:12937135
ICD9:728.9
GeneRIF:12618121
DOID:633
GeneRIF:14741210
GeneRIF:15338498
An inflammatory process affecting the skeletal muscles. Causes include infections, injuries, and autoimmune disorders.[accessedResource: NCIt:C27578][accessDate: 2009-11-30]
SNOMEDCT:128496001
Tomasz Adamusiak
MO_447
genetic modification design
James Malone
BioportalImporter v.1.2
OBI_0400112
MO_868
liquid handler
A liquid_handler is an instrument used for automated liquid transfer and handling.[accessedResource: OBI_0400112][accessDate: 2009-11-30]
Caenorhabditis elegans
NCITaxon:6239
C. elegans
Caenorhabditis elegans is a free-living, transparent nematode (roundworm), about 1 mm in length, which lives in temperate soil environments
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158777&type=germplasm
CS57753 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158777&type=germplasm
James Malone
CS57753
James Malone
NCIt:C13062
FMA:14181
BTO:0001713
The dorsal area between the base of the neck and the sacrum.
[Source: NCI Thesaurus C13062]
The back; especially : the entire dorsal surface of an animal.[accessedResource: BTO:0001713][accessDate: 2009-11-30]
BioportalImporter v.1.2
back
James Malone
true
1.8
Strain or line specific to virus
obsolete_virus strain
A polychlorinated dibenzodioxine that has formula C12H4Cl4O2.[accessedResource: CHEBI:28119][accessDate: 2009-11-30]
CHEBI:28119
2,3,7,8-tetrachlorooxanthrene[accessedResource: CHEBI:28119][accessDate: 2009-11-30]
BioportalImporter v.1.2
2,3,7,8-tetrachlorodibenzodioxine
UMUC3
James Malone
Ele Holloway
CS57543
http://www.arabidopsis.org/servlets/TairObject?id=1005158567&type=germplasm
James Malone
CS57543 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158567&type=germplasm
https://www.cbil.upenn.edu/RADQuerier/php/sampleInfo.php?assay_id=8647&&study_id=2424
C57Bl/10 derived non-diabetic mouse strain expressing H2g7 and Idd3
Tomasz Adamusiak
Jie Zheng
B10.NOD_H2g7_Idd3
SW900
James Malone
Ele Holloway
A germ layer lying remote from the surface of the embryo that gives rise to internal tissues such as gut.[accessedResource: BTO:0000800][accessDate: 2009-11-30]
TAO:0000117
BioportalImporter v.1.2
hypoblast
mesendoderm
ZFA:0000117
James Malone
BTO:0000800
James Malone
EMAPA:18028
Subdivision of free lower limb, which is the proximal segment of a lower limb and links the free lower limb to the trunk; it is demarcated by the plane of the surface of the acetabular fossa from the free lower limb; together with the free lower limb, it constitutes the lower limb. Examples: There are only two instances, right and left pelvic girdles.[accessedResource: FMAID:16581][accessDate: 2009-11-30]
FMAID:16581
pelvic girdle
EHDAA:7149
MA:0000293
MAT:0000182
BioportalImporter v.1.2
Pulmonary Hypertension[accessedResource: NCIt:C3120][accessDate: 2009-11-30]
James Malone
obsolete_pulmonary arterial hypertension
duplicate of pulmonary hypertension EFO_0001361
true
Increased pressure within the pulmonary circulation due to lung or heart disorder.
[Source: NCI Thesaurus C3120]
1.8
NCIt:C3120
BioportalImporter v.1.2
A volume unit which is equal to 10^[-12] L.[accessedResource: UO:0000103][accessDate: 2009-11-30]
Jie Zheng
James Malone
UO:0000103
Tomasz Adamusiak
picoliter
BioportalImporter v.1.2
MO_905
A picoliter is a volume unit which is equal to 10^-12 L.
pl[accessedResource: UO:0000103][accessDate: 2009-11-30]
1.8
James Malone
MAT:0000342
WBbt:0005760
true
obsolete_somatic nervous system
Duplicate use EFO_0000892
OntologyMappingImporter following MAT:0000342
FMA:69072
mesoderm
James Malone
ozone
CHEBI:25812
James Malone
Canton S
FBst0000001Â
ZFS:0000019
James Malone
gastrula shield
true
epigenetic factor
MO_588
Tomasz Adamusiak
growth condition design
NCI Metathesaurus: C1017212
James Malone
Hibiscus chlorotic ringspot virus
GeneRIF:16079893
James Malone
SNOMEDCT:277575008
MSH:D015459
T-Cell Type Acute Leukemia[accessedResource: NCIt:C3183][accessDate: 2009-11-30]
T Acute Lymphoblastic Leukemia[accessedResource: NCIt:C3183][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15827121
NCIt:C3183
Aggressive T-Cell malignancy with adult onset, caused by HUMAN T-LYMPHOTROPIC VIRUS 1. It is endemic in Japan, the Caribbean basin, Southeastern United States, Hawaii, and parts of Central and South America and sub-Saharan Africa.[accessedResource: MSH:D015459][accessDate: 2009-11-30]
GeneRIF:16326981
GeneRIF:15472075
T-cell acute lymphoblastic leukemia
DOID:5603
GeneRIF:15990867
GeneRIF:12970786
Acute T-Cell Leukemia[accessedResource: NCIt:C3183][accessDate: 2009-11-30]
Precursor T Lymphoblastic Leukemia[accessedResource: DOID:5603][accessDate: 2009-11-30]
Acute T-Cell Lymphocytic Leukemia[accessedResource: NCIt:C3183][accessDate: 2009-11-30]
GeneRIF:11937265
T-ALL[accessedResource: NCIt:C3183][accessDate: 2009-11-30]
T-cell acute lymphoblastic leukemia (disorder)[accessedResource: DOID:5603][accessDate: 2009-11-30]
GeneRIF:16287841
Acute lymphoblastic leukemia of T-cell origin. It comprises about 15% of childhood cases and 25% of adult cases. It is more common in males than females. (WHO, 2001)[accessedResource: NCIt:C3183][accessDate: 2009-11-30]
This type of acute lymphoblastic leukemia comprises about 15% of childhood cases and 25% of adult cases. It is more common in males than females. (WHO, 2001)
[Source: NCI Thesaurus C3183]
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158776&type=germplasm
CS57752
CS57752 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158776&type=germplasm
A carrier or inert medium used as a solvent (or diluent) in which some compound is formulated and or administered.
vehicle
James Malone
OBI_0400113
MO_930
oligonucleotide synthesizer
An instrument used to chemically synthesize oligonucleotides.[accessedResource: OBI_0400113][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
FBbt:00005835
MAT:0000061
James Malone
extraembryonic tissue
SAEL:39
ZFA:0000020
EMAPA:16042
BioportalImporter v.1.0
Brassica oleracea
James Malone
http://en.wikipedia.org/wiki/Brassica_oleracea
NCBITaxon:3712
Brassica oleracea, commonly called Wild Mustard, is a species of Brassica native to coastal southern and western Europe, where its tolerance of salt and lime and its intolerance of competition from other plants typically restrict its natural occurrence to limestone sea cliffs, like the chalk cliffs on both sides of the English Channel.
Tomasz Adamusiak
Jie Zheng
Nonobese diabetic (NOD) mouse strain which is homozygous for the scid mutation.
https://www.cbil.upenn.edu/RADQuerier/php/sampleInfo.php?assay_id=10939&&study_id=3144
http://www.criver.com/fr-FR/ProdServ/ByType/ResModOver/ResMod/Pages/NOD_SCID_mouse_J.aspx
NOD.scid
MIAA:0000145
James Malone
The essential organ of hearing and equilibrium that is located in the temporal bone, is innervated by the auditory nerve, and includes the vestibule, the semicircular canals, and the cochlea.[accessedResource: BTO:0000630][accessDate: 2009-11-30]
BioportalImporter v.1.2
inner ear
BTO:0000630
James Malone
Ele Holloway
UMC11
Upper limb girdle[accessedResource: FMAID:23217][accessDate: 2009-11-30]
Shoulder girdle[accessedResource: FMAID:23217][accessDate: 2009-11-30]
MA:0000292
James Malone
BioportalImporter v.1.2
Subdivision of free upper limb, which is the proximal segment of an upper limb and links the free upper limb to the trunk; it is demarcated by the plane of the surface of the glenoid fossa from the free upper limb; together with the free upper limb, it constitutes the upper limb. Examples: There are only two instances, right and left pectoral girdles.[accessedResource: FMAID:23217][accessDate: 2009-11-30]
FMAID:23217
MAT:0000181
pectoral girdle
EMAPA:18025
EHDAA:6039
The part of the axis of a plant embryo or seedling below the cotyledon.[accessedResource: BTO:0000613][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
PO:0020100
BTO:0000613
hypocotyl
CHEBI:50122
A thiazolidenedione that has formula C18H19N3O3S.[accessedResource: CHEBI:50122][accessDate: 2009-11-30]
5-(4-{2-[methyl(pyridin-2-yl)amino]ethoxy}benzyl)-1,3-thiazolidine-2,4-dione[accessedResource: CHEBI:50122][accessDate: 2009-11-30]
BioportalImporter v.1.2
rosiglitazone
James Malone
James Malone
Ele Holloway
SW948
A lung component is a respiratory system component which is part of a lung.
lung component
James Malone
FBbt:00005422
amnioserosa anlage in statu nascendi
James Malone
James Malone
CS57783 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158807&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158807&type=germplasm
CS57783
MAT:0000338
BioportalImporter v.1.2
EHDAA:2893
The peripheral nervous system (PNS) connects the central nervous system (CNS) to sensory organs (such as the eye and ear), other organs of the body, muscles, blood vessels and glands.[accessedResource: BTO:0001028][accessDate: 2009-11-30]
TADS:0000221
XAO:0000178
The outer parts of the nervous system that perform sensory and motor functions.[accessedResource: FBbt:00005098][accessDate: 2009-11-30]
peripheral nervous system
EMAPA:16665
BTO:0001028
AAO:0000429
FBbt:00005098
James Malone
PNS
CHEBI:25355
mitochondrial respiratory-chain inhibitor
James Malone
CHEBI:25355
plant component
James Malone
MAT:0000003
chondrosarcoma NOS (morphologic abnormality)[accessedResource: DOID:3371][accessDate: 2009-11-30]
GeneRIF:15475194
GeneRIF:11776394
GeneRIF:12736724
GeneRIF:14587027
A slowly growing malignant neoplasm derived from cartilage cells, occurring most frequently in pelvic bones or near the ends of long bones, in middle-aged and old people. Most chondrosarcomas arise de novo, but some may develop in a preexisting benign cartilaginous lesion or in patients with ENCHONDROMATOSIS. (Stedman, 25th ed)[accessedResource: MSH:D002813][accessDate: 2009-11-30]
A malignant mesenchymal tumor arising from cartilage-forming tissues involving the bones. It affects middle-aged to elderly adults, and the pelvic bones, ribs, shoulder girdle, and long bones are the most common sites of involvement. Most chondrosarcomas arise de novo, but some may develop in a preexisting benign cartilaginous lesion.[accessedResource: NCIt:C2946][accessDate: 2009-11-30]
NCIt:C2946
GeneRIF:15534109
SNOMEDCT:189886003
GeneRIF:15694358
James Malone
GeneRIF:12618336
BioportalImporter v.1.2
DOID:3371
GeneRIF:15499569
SNOMEDCT:14990007
GeneRIF:12021923
GeneRIF:16288985
GeneRIF:16157221
GeneRIF:15796962
chondrosarcoma of bone[accessedResource: DOID:3371][accessDate: 2009-11-30]
GeneRIF:15316669
chondrosarcoma
chondrosarcoma (morphologic abnormality)[accessedResource: DOID:3371][accessDate: 2009-11-30]
GeneRIF:15226640
MSH:D002813
saline
myelodysplastic syndrome
James Malone
A red blood cell. In mammals, mature erythrocytes are non-nucleated, biconcave disks containing hemoglobin whose function is to transport oxygen.[accessedResource: CL:0000232][accessDate: 2009-11-30]
BTO:0000424
erythrocyte
BioportalImporter v.1.2
CL:0000232
red blood cell[accessedResource: CL:0000232][accessDate: 2009-11-30]
Any of the hemoglobin-containing cells that carry oxygen to the tissues and are responsible for the red color of vertebrate blood.[accessedResource: BTO:0000424][accessDate: 2009-11-30]
RBC[accessedResource: CL:0000232][accessDate: 2009-11-30]
James Malone
diabetes mellitus type 2
type II diabetes mellitus
Tomasz Adamusiak
NCIt:C26747
DOID:9352
A sulfone that has formula C17H14O4S.[accessedResource: CHEBI:8887][accessDate: 2009-11-30]
BioportalImporter v.1.2
4-[4-(methylsulfonyl)phenyl]-3-phenylfuran-2(5H)-one[accessedResource: CHEBI:8887][accessDate: 2009-11-30]
CHEBI:8887
rofecoxib
MAT:0000189
BTO:0000206
SAEL:17
MA:0000104
EV:0100141
TAO:0001501
cartilage
A specialized, fibrous connective tissue, forming most of the temporary skeleton of the embryo, providing a model in which most of the bones develop, and constituting an important part of the growth mechanism of the organism. It exists in several types, the most important of which are hyaline cartilage, elastic cartilage, and fibrocartilage. Also used as a general term to designate a mass of such tissue in a particular site in the body.[accessedResource: BTO:0000206][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
XAO:0000170
1.5
Laryngopharynx[accessedResource: NCIt:C12246][accessDate: 2009-11-30]
Hypopharynx[accessedResource: NCIt:C12246][accessDate: 2009-11-30]
Obsolete - duplication use laryngopharynx EFO_0001388 instead
true
The portion of the pharynx that lies below the upper edge of the epiglottis and opens into the larynx and esophagus.[accessedResource: BTO:0001740][accessDate: 2009-11-30]
BTO:0001740
James Malone
The lower part of the pharynx that connects to the esophagus.[accessedResource: NCIt:C12246][accessDate: 2009-11-30]
obsolete_hypopharynx
NCIt:C12246
The hypopharynx is part of the pharynx that lies below the upper edge of the epiglottis and opens into the larynx and esophagus.
BioportalImporter v.1.2
BioportalImporter v.1.2
4-hydroxy-2-nonenal
CHEBI:32585
4-hydroxynon-2-enal[accessedResource: CHEBI:32585][accessDate: 2009-11-30]
A hydroxyaldehyde that has formula C9H16O2.[accessedResource: CHEBI:32585][accessDate: 2009-11-30]
washing
James Malone
The process of applying a solvent (e.g. water) or some solution (e.g. SSC/SDS) to a BioMaterial or an array to remove impurities or unwanted compounds.
The Grivet (Chlorocebus aethiops) is an Old World monkey with long white tufts of hair along the sides of the face.
James Malone
http://en.wikipedia.org/wiki/Grivet
NCITaxon:9534
grivet
African green monkey
Chlorocebus aethiops
James Malone
CS57883
http://www.arabidopsis.org/servlets/TairObject?id=1005158907&type=germplasm
CS57883 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158907&type=germplasm
James Malone
CS57779 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158803&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158803&type=germplasm
CS57779
observation study
The act of regarding attentively and studying facts and occurrences, gathering data through analyzing, measuring, and drawing conclusions
James Malone
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
cerebral peduncle
NIFSTD:birnlex_1202
FMA:62394
Peduncle of midbrain[accessedResource: FMA:62394][accessDate: 2009-11-30]
An uncommon benign neoplasm arising from the bone. It is characterized by the presence of spindle-shaped or stellate chondrocytes, a lobulated growth pattern, myxoid stroma formation, and sometimes multinucleated giant cells. It has been associated with chromosomal rearrangement of 6q13 and 6q25 bands. The most common clinical symptom is mild, localized pain.
[Source: NCI Thesaurus C3830]
BioportalImporter v.1.2
DOID:2694
Chondromyxoid fibroma (morphologic abnormality)[accessedResource: DOID:2694][accessDate: 2009-11-30]
James Malone
SNOMEDCT:39553005
chondromyxoid fibroma
NCIt:C3830
SAEL:81
BioportalImporter v.1.0
ZFA:0000070
MA:0000230
James Malone
somatic nervous system
WBbt:0005760
FMAID:9903
MAT:0000099
somatic PNS
Tomasz Adamusiak
amygdala central nucleus
amygdala
Archistriatum[accessedResource: FMAID:61841][accessDate: 2009-11-30]
MAT:0000289
An almond-shaped group of basal nuclei anterior to the inferior horn of the lateral ventricle of the brain, within the temporal lobe. The amygdala is part of the limbic system. (MeSH)[accessedResource: NCIt:C12440][accessDate: 2009-11-30]
Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe.[accessedResource: FMAID:61841][accessDate: 2009-11-30]
Amygdaloid complex[accessedResource: FMAID:61841][accessDate: 2009-11-30]
NCIt:C12440
Amygdaloid nuclear groups[accessedResource: FMAID:61841][accessDate: 2009-11-30]
Amygdaloid nuclear complex[accessedResource: FMAID:61841][accessDate: 2009-11-30]
EV:0100189
BTO:0001042
SAEL:4
FMAID:61841
Amygdaloid Nucleus[accessedResource: NCIt:C12440][accessDate: 2009-11-30]
Amygdaloid Body[accessedResource: NCIt:C12440][accessDate: 2009-11-30]
NIFSTD:birnlex_1241
James Malone
MA:0000887
BioportalImporter v.1.2
The one of the four basal ganglia in each cerebral hemisphere that is part of the limbic system and consists of an almond-shaped mass of gray matter in the anterior extremity of the temporal lobe.[accessedResource: BTO:0001042][accessDate: 2009-11-30]
James Malone
An agent that increases the frequency of spontanenous mutation, usually by interacting directly with DNA and causing it damage, including base substitution.[accessedResource: CHEBI:25435][accessDate: 2009-11-30]
CHEBI:25435
BioportalImporter v.1.2
CHEBI:25435
mutagen
James Malone
MAT:0000002
fungal component
tempol
oral squamous cell carcinoma
James Malone
SNOMEDCT:276803003
Adenocarcinoma of the Esophagus[accessedResource: NCIt:C4025][accessDate: 2009-11-30]
NCIt:C4025
Oesophageal Adenocarcinoma NOS[accessedResource: NCIt:C4025][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15720819
GeneRIF:12771886
GeneRIF:15526353
Adenocarcinoma of Esophagus[accessedResource: NCIt:C4025][accessDate: 2009-11-30]
GeneRIF:15688381
DOID:4914
GeneRIF:15680394
Esophagus Adenocarcinoma[accessedResource: NCIt:C4025][accessDate: 2009-11-30]
GeneRIF:15517897
Adenocarcinoma of esophagus (disorder)[accessedResource: DOID:4914][accessDate: 2009-11-30]
GeneRIF:12112555
A malignant tumor with glandular differentiation arising predominantly from Barrett mucosa in the lower third of the esophagus. Rare examples of esophageal adenocarcinoma deriving from ectopic gastric mucosa in the upper esophagus have also been reported. Grossly, esophageal adenocarcinomas are similar to esophageal squamous cell carcinomas. Microscopically, adenocarcinomas arising in the setting of Barrett esophagus are typically papillary and/or tubular. The prognosis is poor.[accessedResource: NCIt:C4025][accessDate: 2009-11-30]
James Malone
esophageal adenocarcinoma
GeneRIF:16040301
A retinoid that has formula C20H28O2.[accessedResource: CHEBI:26536][accessDate: 2009-11-30]
CHEBI:26536
retinoic acid
3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoic acid[accessedResource: CHEBI:26536][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15687131
GeneRIF:15979050
GeneRIF:15353500
GeneRIF:15761249
GeneRIF:15286002
GeneRIF:16215633
GeneRIF:15242552
GeneRIF:15217799
GeneRIF:15505094
GeneRIF:14507115
GeneRIF:14970910
GeneRIF:14759414
DOID:6432
SNOMEDCT:70995007
GeneRIF:12714563
GeneRIF:12740218
GeneRIF:14684682
GeneRIF:15516492
GeneRIF:15358862
GeneRIF:15725412
pulmonary hypertension
GeneRIF:16113050
GeneRIF:12244304
GeneRIF:15824199
GeneRIF:12391106
GeneRIF:16236896
GeneRIF:12750401
GeneRIF:12909593
GeneRIF:12358323
GeneRIF:12016106
GeneRIF:12547729
GeneRIF:15192043
GeneRIF:15031260
GeneRIF:15295086
Pulmonary hypertension (disorder)[accessedResource: DOID:6432][accessDate: 2009-11-30]
GeneRIF:14530202
GeneRIF:12391278
Increased VASCULAR RESISTANCE in the PULMONARY CIRCULATION, usually secondary to HEART DISEASES or LUNG DISEASES.[accessedResource: MSH:D006976][accessDate: 2009-11-30]
GeneRIF:14726295
GeneRIF:15146952
GeneRIF:15155268
BioportalImporter v.1.2
GeneRIF:12896876
GeneRIF:16085672
GeneRIF:15520307
GeneRIF:12835224
GeneRIF:14512515
James Malone
GeneRIF:12177436
MSH:D006976
GeneRIF:15364894
GeneRIF:15618545
GeneRIF:15331358
GeneRIF:14715505
GeneRIF:15684702
MA:0000319
The point of contact between elements of an animal skeleton with the parts that surround and support it.[accessedResource: BTO:0001686][accessDate: 2009-11-30]
EV:0100142
FMAID:228659
James Malone
BTO:0001686
TAO:0000367
Anatomical junction which consists of parts of two or more adjacent bones or cartilages which are interconnected by organs and/or organ parts that consist of various types of connective tissue. Together with other joints and bones, a joint constitutes the skeletal system. Examples: pubic symphysis, knee joint, temporomandibular joint.[accessedResource: FMAID:7490][accessDate: 2009-11-30]
FBbt:00004645
FMAID:7490
BioportalImporter v.1.2
XAO:0000171
joint
MAT:0000188
http://www.arabidopsis.org/servlets/TairObject?id=1005158908&type=germplasm
CS57884
James Malone
CS57884 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158908&type=germplasm
A 3',5'-cyclic purine nucleotide that has formula C10H12N5O6P.[accessedResource: CHEBI:17489][accessDate: 2009-11-30]
CHEBI:17489
BioportalImporter v.1.2
3',5'-cyclic AMP
adenosine 3',5'-(hydrogen phosphate)[accessedResource: CHEBI:17489][accessDate: 2009-11-30]
wing disc
James Malone
BioportalImporter v.1.2
wing imaginal disc
BTO:0001464
The entire dorsal mesothoracic disc (wing, notal, and pleural parts), in the larval stage of Drosophila.[accessedResource: BTO:0001464][accessDate: 2009-11-30]
James Malone
Deficiency of vitamin B>12< (disorder)[accessedResource: DOID:8459][accessDate: 2009-11-30]
BioportalImporter v.1.2
DOID:8459
A nutritional condition produced by a deficiency of VITAMIN B 12 in the diet, characterized by megaloblastic anemia. Since vitamin B 12 is not present in plants, humans have obtained their supply from animal products, from multivitamin supplements in the form of pills, and as additives to food preparations. A wide variety of neuropsychiatric abnormalities is also seen in vitamin B 12 deficiency and appears to be due to an undefined defect involving myelin synthesis. (From Cecil Textbook of Medicine, 19th ed, p848)[accessedResource: MSH:D014806][accessDate: 2009-11-30]
Cobalamin deficiency (disorder)[accessedResource: DOID:8459][accessDate: 2009-11-30]
Vitamin B 12 Deficiency[accessedResource: DOID:8459][accessDate: 2009-11-30]
vitamin B12 deficiency
SNOMEDCT:190634004
MSH:D014806
goat
James Malone
NCITaxon:9925
Capra hircus
scapula
The flat triangle-shaped bone that connects the humerus with the clavicle in the back of the shoulder.
[Source: NCI Thesaurus C12783]
Either of a pair of large triangular bones lying one in each dorsal lateral scapula: part of the thorax, being the principal bone of the corresponding half of the shoulder girdle, and articulating with the corresponding clavicle or coracoid.[accessedResource: BTO:0001218][accessDate: 2009-11-30]
Shoulder Blade[accessedResource: NCIt:C12783][accessDate: 2009-11-30]
BTO:0001218
NCIt:C12783
James Malone
BioportalImporter v.1.2
SNOMEDCT:9001003
BioportalImporter v.1.2
DOID:2649
Chondroblastoma (morphologic abnormality)[accessedResource: DOID:2649][accessDate: 2009-11-30]
Chondroblastoma NOS (morphologic abnormality)[accessedResource: DOID:2649][accessDate: 2009-11-30]
NCIt:C2945
A benign, lytic neoplasm usually arising from the cartilage in epiphysis and metaphysis of bone. It is a well circumscribed tumor characterized by the presence of chondroblasts, osteoclast-like giant cells, myxoid stroma formation, calcification, and mitotic activity. In aggressive cases, there is rearrangement of the 8q21 chromosome band. The tumor occurs most frequently in children and young adults.[accessedResource: NCIt:C2945][accessDate: 2009-11-30]
A usually benign tumor composed of cells which arise from chondroblasts or their precursors and which tend to differentiate into cartilage cells. It occurs primarily in the epiphyses of adolescents. It is relatively rare and represents less than 2% of all primary bone tumors. The peak incidence is in the second decade of life; it is about twice as common in males as in females. (From Dorland, 27th ed; Holland et al., Cancer Medicine, 3d ed, p1846)[accessedResource: MSH:D002804][accessDate: 2009-11-30]
GeneRIF:13680221
chondroblastoma
James Malone
SNOMEDCT:189887007
MSH:D002804
Chondroblastoma of bone[accessedResource: DOID:2649][accessDate: 2009-11-30]
MA:0000225
sympathetic nervous system
XAO:0000211
James Malone
ZFA:0000142
TAO:0001576
One of the two divisions of the vertebrate autonomic nervous system (the other being the parasympathetic nervous system). The sympathetic preganglionic neurons have their cell bodies in the thoracic and lumbar regions of the spinal cord, and connect to the paravertebral chain of sympathetic ganglia. Innervate heart and blood vessels, sweat glands, viscera, and the adrenal medulla. Most sympathetic neurons, but not all, use noradrenaline as a post-ganglionic neurotransmitter.[accessedResource: BTO:0001832][accessDate: 2009-11-30]
Sympathetic part of autonomic division of nervous system[accessedResource: FMAID:9906][accessDate: 2009-11-30]
MAT:0000100
EHDAA:3769
FMAID:9906
EMAPA:16985
sympathetic PNS
BioportalImporter v.1.2
EV:0100374
BTO:0001832
segmentation 20-25 somites
ZFS:0000027
James Malone
James Malone
CS57789
http://www.arabidopsis.org/servlets/TairObject?id=1005158813&type=germplasm
CS57789 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158813&type=germplasm
James Malone
well-differentiated_sarcoma
FMAID:3932
brachiocephalic artery
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
Innominate artery[accessedResource: FMAID:3932][accessDate: 2009-11-30]
Brachiocephalic trunk[accessedResource: FMAID:3932][accessDate: 2009-11-30]
epithelial
James Malone
A cell that is usually found in a two-dimensional sheet with a free surface.[accessedResource: CL:0000066][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
epithelial cell
BTO:0000414
NIFSTD:sao441624014
Cell that cover the surface of the body and line its cavities.[accessedResource: BTO:0000414][accessDate: 2009-11-30]
CL:0000066
James Malone
rosette leaf
PO:0000014
James Malone
animal component
MAT:0000001
urocortin I
C16080
CHEBI:26158
James Malone
CHEBI:26158
phytohormone
James Malone
metastatic prostate cancer
MA:0000289
James Malone
vomeronasal organ
James Malone
CS57886
http://www.arabidopsis.org/servlets/TairObject?id=1005158910&type=germplasm
CS57886 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158910&type=germplasm
BioportalImporter v.1.2
CHEBI:46345
James Malone
5-fluorouracil
5-fluoropyrimidine-2,4(1H,3H)-dione[accessedResource: CHEBI:46345][accessDate: 2009-11-30]
An organofluorine compound that has formula C4H3FN2O2.[accessedResource: CHEBI:46345][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:9168
rapamycin
(1R,9S,12S,15R,16E,18R,19R,21R,23S,24E,26E,28E,30S,32S,35R)-1,18-dihydroxy-12-{(2S)-1-[(1S,3R,4R)-4-hydroxy-3-methoxycyclohexyl]propan-2-yl}-19,30-dimethoxy-15,17,21,23,29,35-hexamethyl-11,36-dioxa-4-azatricyclo[30.3.1.0(4,9)]hexatriaconta-16,24,26,28-tetraene-2,3,10,14,20-pentone[accessedResource: CHEBI:9168][accessDate: 2009-11-30]
A macrolide that has formula C51H79NO13.[accessedResource: CHEBI:9168][accessDate: 2009-11-30]
SW982
James Malone
Ele Holloway
BioportalImporter v.1.2
Adenoids[accessedResource: NCIt:C12802][accessDate: 2009-11-30]
NCIt:C12802
James Malone
The two organs situated in the throat on either side of the narrow passage from the mouth to the pharynx. They are composed of lymphoid tissues.
[Source: NCI Thesaurus C12802]
tonsil
BTO:0001387
tonsils[accessedResource: NCIt:C12802][accessDate: 2009-11-30]
Either of a pair of prominent masses of lymphoid tissue that lie one on each side of the throat between the anterior and posterior pillars of the fauces.[accessedResource: BTO:0001387][accessDate: 2009-11-30]
James Malone
NIC Thesaurus: C9160
childhood acute myeloid leukemia
segmentation 26+ somites
James Malone
ZFS:0000028
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
coronary artery
NCIt:C12843
A principal artery that originates in the aorta. It supplies blood to the muscular tissue of the heart.[accessedResource: NCIt:C12843][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158809&type=germplasm
CS57785
James Malone
CS57785 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158809&type=germplasm
A dorsal membrane of the embryo.[accessedResource: FBbt:00000095][accessDate: 2009-11-30]
amnioserosa
FBbt:00000095
James Malone
BioportalImporter v.1.2
FMA:82493
pulmonary alveolus
Bronchial Alveolus[accessedResource: NCIt:C12986][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
James Malone
bronchial epithelial
alveolar epithelial type I
bronchoalveolar lavage cell
bronchial epithelial cells
alveolar epithelial type II
true
1.9
obsolete_epithelial cell of lung
CL:0000082
compound term epithelial cell + lung
James Malone
mucinous carcinoma
true
MAT:0000000
anatomy basic component
James Malone
One of the two divisions of the vertebrate autonomic nervous sytem. Parasympathetic nerves emerge cranially as pre-ganglionic fibres from oculomotor, facial, glossopharyngeal and vagus, and from the sacral region of the spinal cord. Most neurons are cholinergic and responses are mediated by muscarinic acetylcholine receptors. The parasympathetic system innervates, for example, salivary glands, thoracic and abdominal viscera, bladder and genitalia.[accessedResource: BTO:0001833][accessDate: 2009-11-30]
ZFA:0000142
BioportalImporter v.1.2
EMAPA:17270
BTO:0001833
Parasympathetic part of autonomic division of nervous system[accessedResource: FMAID:9907][accessDate: 2009-11-30]
MAT:0000101
FMAID:9907
James Malone
MA:0000223
PNS - parasympathetic[accessedResource: MAT:0000101][accessDate: 2009-11-30]
parasympathetic nervous system
TAO:0001575
EHDAA:4655
raloxifene
[6-hydroxy-2-(4-hydroxyphenyl)-1-benzothien-3-yl][4-(2-piperidin-1-ylethoxy)phenyl]methanone[accessedResource: CHEBI:8772][accessDate: 2009-11-30]
CHEBI:8772
James Malone
BioportalImporter v.1.2
A benzothiophene that has formula C28H27NO4S.[accessedResource: CHEBI:8772][accessDate: 2009-11-30]
GeneRIF:15057977
GeneRIF:16077729
GeneRIF:15809268
GeneRIF:11896459
GeneRIF:12111643
NIFSTD:birnlex_12770
DOID:1206
Tomasz Adamusiak
An inherited neurological developmental disorder that is associated with X-LINKED INHERITANCE and may be lethal in utero to hemizygous males. The affected female is normal until the age of 6-25 months when progressive loss of voluntary control of hand movements and communication skills; ATAXIA; SEIZURES; autistic behavior; intermittent HYPERVENTILATION; and HYPERAMMONEMIA appear. (From Menkes, Textbook of Child Neurology, 5th ed, p199)[accessedResource: MSH:D015518][accessDate: 2009-11-30]
GeneRIF:12442230
GeneRIF:11955928
GeneRIF:16015284
GeneRIF:12170461
Rett disorder
GeneRIF:15954098
GeneRIF:12081725
Rett's disorder (disorder)[accessedResource: DOID:1206][accessDate: 2009-11-30]
SNOMEDCT:68618008
GeneRIF:11432961
Rett syndrome
GeneRIF:12770674
GeneRIF:12107440
GeneRIF:12707946
James Malone
GeneRIF:14649549
GeneRIF:11768391
cerebroatrophic hyperammonemia[accessedResource: DOID:1206][accessDate: 2009-11-30]
GeneRIF:16077736
BioportalImporter v.1.2
GeneRIF:12449561
MSH:D015518
GeneRIF:14974082
GeneRIF:14751287
GeneRIF:12160743
James Malone
FMA:72438
Ventral tegmental nucleus (Tsai)[accessedResource: FMA:72438][accessDate: 2009-11-30]
Ventral tegmental nucleus of Tsai[accessedResource: FMA:72438][accessDate: 2009-11-30]
Ventral tegmental area of Tsai[accessedResource: FMA:72438][accessDate: 2009-11-30]
ventral tegmental
BioportalImporter v.1.2
ventral tegmental area
http://www.arabidopsis.org/servlets/TairObject?id=1005158914&type=germplasm
James Malone
CS57890 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158914&type=germplasm
CS57890
CHEBI:50131
BioportalImporter v.1.2
4-amino-1-(2-deoxy-beta-D-erythro-pentofuranosyl)-1,3,5-triazin-2(1H)-one[accessedResource: CHEBI:50131][accessDate: 2009-11-30]
5-aza-2'-deoxycytidine
A 2'-deoxyribonucleoside that has formula C8H12N4O4.[accessedResource: CHEBI:50131][accessDate: 2009-11-30]
NCIt:C12806
Fifth Cranial Nerve[accessedResource: NCIt:C12806][accessDate: 2009-11-30]
Cranial Nerve V[accessedResource: NCIt:C12806][accessDate: 2009-11-30]
Nervus Trigeminus[accessedResource: NCIt:C12806][accessDate: 2009-11-30]
Either of the fifth pair of cranial nerves, having sensory and motor functions in the face, teeth, mouth, and nasal cavity.[accessedResource: BTO:0001072][accessDate: 2009-11-30]
trigeminal nerve
James Malone
BioportalImporter v.1.2
BTO:0001072
The fifth set of paired nerves of the face that emerge from the brain steam. These nerves have sensory and motor functions in the face, oral cavity, and nasal cavity.
[Source: NCI Thesaurus C12806]
Danio rerio
NCITaxon:7955
zebrafish
James Malone
SiHa
James Malone
Ele Holloway
Tomasz Adamusiak
James Malone
well-differentiated liposarcoma
NCIt:C4250
CS57874 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158898&type=germplasm
CS57874
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158898&type=germplasm
true
A drug, solvent, chemical, etc., with a property that can be measured such as concentration.
chemical compound
James Malone
duplicated use class EFO_0000906
obsolete_accumbens nucleus
BioportalImporter v.1.2
Accumbens Nucleus[accessedResource: NCIt:C52733][accessDate: 2009-11-30]
true
NCIt:C52733
supranuclear palsy, progressive
Ele Holloway
Tomasz Adamusiak
DOID:678
BioportalImporter v.1.2
Progressive supranuclear ophthalmoplegia (disorder)[accessedResource: DOID:678][accessDate: 2009-11-30]
NIFSTD:birnlex_12697
James Malone
Progressive supranuclear ophthalmoplegia[accessedResource: DOID:678][accessDate: 2009-11-30]
CHEBI:26710
sodium chloride
An inorganic sodium salt that has formula ClNa.[accessedResource: CHEBI:26710][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
Jie Zheng
renal branch of vagus nerve
FMAID:6670
James Malone
embryonic central brain glia
FBbt:00005663
James Malone
A 6-methylprednisolone that has formula C22H30O5.[accessedResource: CHEBI:6888][accessDate: 2009-11-30]
6alpha-methylprednisolone
CHEBI:6888
BioportalImporter v.1.2
11beta,17,21-trihydroxy-6alpha-methylpregna-1,4-diene-3,20-dione[accessedResource: CHEBI:6888][accessDate: 2009-11-30]
James Malone
GeneRIF:12672029
GeneRIF:15643502
Neoplasm of the Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
GeneRIF:12926071
GeneRIF:15541380
bladder tumor
DOID:5428
GeneRIF:15122326
MSH:D001749
GeneRIF:11888683
GeneRIF:12202941
GeneRIF:12783123
BioportalImporter v.1.2
neoplasm of bladder (disorder)[accessedResource: DOID:5428][accessDate: 2009-11-30]
SNOMEDCT:126885006
Urinary Bladder Neoplasms[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
bladder neoplasm[accessedResource: DOID:5428][accessDate: 2009-11-30]
Tumors or cancer of the URINARY BLADDER.[accessedResource: MSH:D001749][accessDate: 2009-11-30]
NGB - New growth of bladder[accessedResource: DOID:5428][accessDate: 2009-11-30]
Tumor of the Urinary Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
GeneRIF:15273729
Urinary Bladder Tumors[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
NCIt:C2901
Urinary Bladder Neoplasm[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
Tumor of Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
Neoplasm of Urinary Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
Bladder Tumors[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
GeneRIF:15215162
Neoplasm of Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
GeneRIF:12853839
A benign or malignant, primary or metastatic neoplasm of the bladder. - 2003
[Source: NCI Thesaurus C2901]
Tumor of Urinary Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
GeneRIF:12115506
Neoplasm of the Urinary Bladder[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
tumor of the bladder[accessedResource: DOID:5428][accessDate: 2009-11-30]
GeneRIF:12820330
Urinary Bladder Tumor[accessedResource: NCIt:C2901][accessDate: 2009-11-30]
GeneRIF:15539010
GeneRIF:15286433
GeneRIF:15232685
GeneRIF:12446618
GeneRIF:15496156
GeneRIF:14736962
GeneRIF:14610338
GeneRIF:12757981
GeneRIF:14531794
GeneRIF:16164635
GeneRIF:15830182
GeneRIF:15502921
GeneRIF:12874455
GeneRIF:14514642
GeneRIF:15600254
GeneRIF:14521940
GeneRIF:15016802
GeneRIF:15793258
GeneRIF:12722028
GeneRIF:15327405
GeneRIF:15983325
GeneRIF:15745834
GeneRIF:12938144
James Malone
GeneRIF:16249462
GeneRIF:14586741
GeneRIF:15957132
GeneRIF:14694018
SNOMEDCT:197605007
ICD9:250.40
ICD9:250.4
GeneRIF:15153757
GeneRIF:14633865
SNOMEDCT:21858001
DOID:2370
GeneRIF:15942051
GeneRIF:12675860
GeneRIF:12171997
GeneRIF:12941731
GeneRIF:12500218
GeneRIF:15052533
GeneRIF:15322501
GeneRIF:11845237
GeneRIF:12187087
GeneRIF:14747236
GeneRIF:15983323
GeneRIF:12086959
GeneRIF:12606536
GeneRIF:15915338
GeneRIF:14514644
GeneRIF:11770799
GeneRIF:15126006
GeneRIF:15888973
GeneRIF:14694017
GeneRIF:15983219
GeneRIF:15946912
GeneRIF:12200076
GeneRIF:12610055
GeneRIF:15790669
GeneRIF:12505748
GeneRIF:12784186
GeneRIF:12540629
GeneRIF:12413777
GeneRIF:15120704
GeneRIF:11940319
GeneRIF:15047636
GeneRIF:15345671
GeneRIF:14748439
GeneRIF:14578305
GeneRIF:12032186
GeneRIF:16211375
GeneRIF:15562008
GeneRIF:14747204
SNOMEDCT:127013003
GeneRIF:14583183
GeneRIF:16301823
GeneRIF:12147786
GeneRIF:12147787
GeneRIF:12911551
GeneRIF:15308130
BioportalImporter v.1.2
ICD9:250.42
GeneRIF:15223229
SNOMEDCT:54181000
GeneRIF:15616804
GeneRIF:12436341
GeneRIF:16164625
GeneRIF:16091581
GeneRIF:12882872
GeneRIF:12631336
GeneRIF:15489960
GeneRIF:16249547
diabetic nephropathy
GeneRIF:14674716
GeneRIF:14633859
GeneRIF:12897091
GeneRIF:16014032
GeneRIF:12105259
GeneRIF:15616035
GeneRIF:12630823
GeneRIF:15610240
GeneRIF:15780082
GeneRIF:12644472
fenpropimorph
4-[3-(4-tert-butylphenyl)-2-methylpropyl]-2,6-dimethylmorpholine[accessedResource: CHEBI:50148][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
A morpholine that has formula C20H33NO.[accessedResource: CHEBI:50148][accessDate: 2009-11-30]
CHEBI:50148
James Malone
true
quality
BFO:quality
A quality is an entity that describes some aspect which is intrinsic to that particular object and is dependent on or more material entities in which it inheres in or is borne by. Example the color of a tomato, the ambient temperature of air, the circumference of a waist, the shape of a nose, the mass of a piece of gold, the weight of a chimpanzee
anlage in statu nascendi
"anlagen in statu nascendi" are domains that do not yet coincide 1:1 with a later organ. Anlagen in statu nascendi are typically defined for the early blastoderm by the expression domains of genes which, in the late blastoderm or later, are expressed in specific anlagen, but initially come on in larger domains.[accessedResource: FBbt:00005413][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
FBbt:00005413
primordium
MAT:0000482
A primordium is a tissue modifier describing an organ or tissue in its earliest recognizable stage of development. For example, intestinal primordium.
intestinal primordium
James Malone
proximal portion of anterior interventricular branch of left coronary artery
Proximal portion of anterior descending branch of left coronary artery[accessedResource: FMAID:3866][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
FMAID:3866
5-fluorouridine
James Malone
Ele Holloway
CHEBI:46390
FMAID:54807
Tomasz Adamusiak
tongue mucosa
Mucosa of tongue[accessedResource: FMAID:54807][accessDate: 2009-11-30]
Jie Zheng
Lingual mucosa[accessedResource: FMAID:54807][accessDate: 2009-11-30]
Mucous membrane of tongue[accessedResource: FMAID:54807][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
HCC2185
FMA:22543
plantaris muscle
plantaris
NCI Metathesaurus http://ncimeta.nci.nih.gov/MetaServlet/ResultServlet?cui=C0019247 Date Accessed: 30th October 2007
genetic disorder
Genetic Diseases are diseases in which inherited genes predispose to increased risk. The genetic disorders associated with cancer often result from an alteration or mutation in a single gene. The diseases range from rare dominant cancer family syndrome to familial tendencies in which low-penetrance genes may interact with other genes or environmental factors to induce cancer. Research may involve clinical, epidemiologic, and laboratory studies of persons, families, and populations at high risk of these disorders.
James Malone
dye swap design
Tomasz Adamusiak
MO_858
James Malone
BioportalImporter v.1.2
A quinazoline that has formula C22H24ClFN4O3.[accessedResource: CHEBI:49668][accessDate: 2009-11-30]
N-(3-chloro-4-fluorophenyl)-7-methoxy-6-(3-morpholin-4-ylpropoxy)quinazolin-4-amine[accessedResource: CHEBI:49668][accessDate: 2009-11-30]
gefitinib
CHEBI:49668
Tomasz Adamusiak
SNOMEDCT:30496006
viral cardiomyopathy
acinar cell carcinoma
Acinar cell carcinoma (morphologic abnormality)[accessedResource: DOID:3025][accessDate: 2009-11-30]
GeneRIF:11891193
Acinic cell Carcinoma[accessedResource: DOID:3025][accessDate: 2009-11-30]
MSH:D018267
DOID:3025
James Malone
BioportalImporter v.1.2
A malignant tumor arising from secreting cells of a racemose gland, particularly the salivary glands. Racemose (Latin racemosus, full of clusters) refers, as does acinar (Latin acinus, grape), to small saclike dilatations in various glands. Acinar cell carcinomas are usually well differentiated and account for about 13% of the cancers arising in the parotid gland. Lymph node metastasis occurs in about 16% of cases. Local recurrences and distant metastases many years after treatment are common. This tumor appears in all age groups and is most common in women. (Stedman, 25th ed; Holland et al., Cancer Medicine, 3d ed, p1240; from DeVita Jr et al., Cancer: Principles & Practice of Oncology, 3d ed, p575)[accessedResource: MSH:D018267][accessDate: 2009-11-30]
Acinar Carcinoma[accessedResource: NCIt:C3768][accessDate: 2009-11-30]
Acinar Adenocarcinoma[accessedResource: NCIt:C3768][accessDate: 2009-11-30]
SNOMEDCT:45410002
Acinar Cell Adenocarcinoma[accessedResource: NCIt:C3768][accessDate: 2009-11-30]
Acinic Cell Adenocarcinoma[accessedResource: NCIt:C3768][accessDate: 2009-11-30]
NCIt:C3768
A malignant glandular epithelial neoplasm consisting of secretory cells forming acinar patterns. Representative examples include the acinar cell carcinoma of the pancreas and the acinar adenocarcinoma of the prostate gland.[accessedResource: NCIt:C3768][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158897&type=germplasm
CS57873
James Malone
CS57873 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158897&type=germplasm
Alveoli[accessedResource: C12986][accessDate: 2009-11-30]
C12986
alveolus
James Malone
Ele Holloway
BioportalImporter v.1.2
Tomasz Adamusiak
Jie Zheng
James Malone
compound based treatment
A treatment process in which a chemical compound is administered to the subject under investigation.
MO_798
sodium 2-oxopropanoate[accessedResource: CHEBI:50144][accessDate: 2009-11-30]
An organic sodium salt that has formula C3H3NaO3.[accessedResource: CHEBI:50144][accessDate: 2009-11-30]
CHEBI:50144
sodium pyruvate
BioportalImporter v.1.2
AACOCF3
(6Z,9Z,12Z,15Z)-1,1,1-trifluorohenicosa-6,9,12,15-tetraen-2-one[accessedResource: CHEBI:2341][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:2341
An organofluorine compound that has formula C21H31F3O.[accessedResource: CHEBI:2341][accessDate: 2009-11-30]
proximal renal artery
Tomasz Adamusiak
Jie Zheng
James Malone
BioportalImporter v.1.2
NCIt:C32205
bladder mucosa
FBbt:00005662
embryonic central brain
James Malone
James Malone
An information entity is an entity that represents information about some other entity. For example, a measurement, a clustered data set.
information entity
James Malone
Ele Holloway
CHEBI:31593
fasudil hydrochloride
Diffuse Adenocarcinoma of the Stomach[accessedResource: NCIt:C9159][accessDate: 2009-11-30]
Diffuse Stomach Adenocarcinoma[accessedResource: NCIt:C9159][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C9159
Diffuse Adenocarcinoma of Stomach[accessedResource: NCIt:C9159][accessDate: 2009-11-30]
Adenocarcinoma of the Linitis Plastica Type[accessedResource: NCIt:C9159][accessDate: 2009-11-30]
Adenocarcinoma of Linitis Plastica Type[accessedResource: NCIt:C9159][accessDate: 2009-11-30]
diffuse gastric adenocarcinoma
James Malone
An adenocarcinoma arising from the stomach. Microscopically, it is characterized by the presence of a diffuse infiltrate, composed of individual adenocarcinoma cells or groups of adenocarcinoma cells in a fibrous or mucoid stroma. Many cells contain mucin droplets, producing a signet-ring configuration.
[Source: NCI Thesaurus C9159]
Tomasz Adamusiak
James Malone
A precursor is a tissue modifier describing a substance, cell, or cellular component from which another substance, cell, or cellular component is formed. For example, muscle precursor cell.
precursor
NIFSTD:sao2146594471
MAT:0000481
muscle precursor cell
proximal portion of circumflex branch of left coronary artery
FMAID:3897
Tomasz Adamusiak
Jie Zheng
A mature T-cell non-Hodgkin lymphoma, characterized by systemic disease and a polymorphous infiltrate involving lymph nodes. It occurs in the middle aged and elderly, with an equal incidence in males and females. The clinical course is typically aggressive. (WHO, 2001)[accessedResource: NCIt:C7528][accessDate: 2009-11-30]
BioportalImporter v.1.2
Angioimmunoblastic Lymphadenopathy with Dysproteinemia[accessedResource: NCIt:C7528][accessDate: 2009-11-30]
AILD[accessedResource: NCIt:C7528][accessDate: 2009-11-30]
angioimmunoblastic T-cell lymphoma
Angioimmunoblastic Lymphadenopathy[accessedResource: NCIt:C7528][accessDate: 2009-11-30]
AILT[accessedResource: NCIt:C7528][accessDate: 2009-11-30]
Angioimmunoblastic Lymphadenopathy Type T-Cell Lymphoma[accessedResource: NCIt:C7528][accessDate: 2009-11-30]
NCIt:C7528
James Malone
renal artery
NCIt:C12778
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
true
genetic factor
MO_557
Tomasz Adamusiak
Jie Zheng
James Malone
HCC3153
MA:0000912
perirhinal cortex
James Malone
Tomasz Adamusiak
MO_899
array platform variation design
CHEBI:31638
fulvestrant
A 3-hydroxy steroid that has formula C32H47F5O3S.[accessedResource: CHEBI:31638][accessDate: 2009-11-30]
7alpha-{9-[(4,4,5,5,5-pentafluoropentyl)sulfinyl]nonyl}estra-1(10),2,4-triene-3,17beta-diol[accessedResource: CHEBI:31638][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
James Malone
BioportalImporter v.1.2
The portion of the body that lies between the thorax and the pelvis.
[Source: NCI Thesaurus C12664]
Abdomen[accessedResource: NCIt:C12664][accessDate: 2009-11-30]
abdominal cavity
NCIt:C12664
OntologyMappingImporter following MAT:0000277
James Malone
ZFA:0001123
MAT:0000277
median fin skeleton
James Malone
Ele Holloway
corneal stroma
MA:0001245
intermediolateral column motoneuron
James Malone
columnar neuron
CL:0000112
BioportalImporter v.1.2
(2Z,4E)-5-(1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl)-3-methylpenta-2,4-dienoic acid[accessedResource: CHEBI:22152][accessDate: 2009-11-30]
CHEBI:22152
abscisic acid
An apo carotenoid sesquiterpenoid that has formula C15H20O4.[accessedResource: CHEBI:22152][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158900&type=germplasm
CS57876
James Malone
CS57876 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158900&type=germplasm
Tomasz Adamusiak
Jie Zheng
distal renal arthery
James Malone
Ele Holloway
DU4475
FBbt:00001060
embryonic brain
James Malone
Peripheral Blood[accessedResource: NCIt:C12434][accessDate: 2009-11-30]
SAEL:8
whole blood
BTO:0000089
MAT:0000083
blood cells
TAO:0009044
MA:0000059
1: The fluid that circulates in the heart, arteries, capillaries, and veins of a vertebrate animal carrying nourishment and oxygen to and bringing away waste products from all parts of the body.n2: A comparable fluid of an invertebrate.[accessedResource: BTO:0000089][accessDate: 2009-11-30]
MO_409
Jie Zheng
A liquid tissue; its major function is to transport oxygen throughout the body. It also supplies the tissues with nutrients, removes waste products, and contains various components of the immune system defending the body against infection. Several hormones also travel in the blood.
[Source: NCI Thesaurus C12434]
James Malone
NCIt:C12434
ZFA:0009043
blood
BioportalImporter v.1.2
Tomasz Adamusiak
peripheral blood progenitor
Reticuloendothelial System, Blood[accessedResource: NCIt:C12434][accessDate: 2009-11-30]
BFO:disposition
A disposition is an entity that essentially causes a specific process or transformation in an entity in which it inheres, under specific circumstances and in conjunction with the laws of nature. For example, the disposition of vegetables to decay when not refrigerated, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease.
For example, the disposition of vegetables to decay when not refrigerated, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease.
disposition
true
James Malone
Tomasz Adamusiak
Gastric Antrum[accessedResource: NCIt:C12259][accessDate: 2009-11-30]
Jie Zheng
BioportalImporter v.1.2
pyloric antrum
Antrum Pylori[accessedResource: NCIt:C12259][accessDate: 2009-11-30]
The initial part of the pyloric canal of the stomach. This site contains endocrine cells that produce gastrin and somatostatin.[accessedResource: NCIt:C12259][accessDate: 2009-11-30]
NCIt:C12259
James Malone
cranial placodes
placode
MAT:0000479
A placode is a tissue modifier describing the thickening of embryonic ectoderm from which a definitive structure develops. For example, the cranial placodes.
SNOMEDCT:409498004
ICD9:022.9
SNOMEDCT:187302001
BioportalImporter v.1.2
anthrax
GeneRIF:16239556
GeneRIF:15689409
SNOMEDCT:186303000
GeneRIF:15569923
SNOMEDCT:186304006
DOID:7427
GeneRIF:16194238
ICD9:022
James Malone
ICD9:022.8
proximal portion of right coronary artery
FMAID:3804
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
First segment of right coronary artery[accessedResource: FMAID:3804][accessDate: 2009-11-30]
Anterior segment of right coronary artery[accessedResource: FMAID:3804][accessDate: 2009-11-30]
CHEBI:30911
BioportalImporter v.1.2
glucitol
MO_565
all pairs
Tomasz Adamusiak
anal pad specific anlage
FBbt:00005482
James Malone
5,6-bis(phenylamino)-1H-isoindole-1,3(2H)-dione[accessedResource: CHEBI:53110][accessDate: 2009-11-30]
4,5-dianilinophthalimide
CHEBI:53110
Phthalimide substituted at the 4- and 5-positions by anilino groups.[accessedResource: CHEBI:53110][accessDate: 2009-11-30]
BioportalImporter v.1.2
DAPH1
James Malone
Ele Holloway
DAPH
HCC202
James Malone
NCIt:C33250
FMA:9610
Faucial tonsil[accessedResource: FMA:9610][accessDate: 2009-11-30]
palatine tonsil
James Malone
BioportalImporter v.1.2
BioportalImporter v.1.2
Common variable agammaglobulinemia (disorder)[accessedResource: DOID:12177][accessDate: 2009-11-30]
ICD9:279.06
Heterogeneous group of immunodeficiency syndromes characterized by hypogammaglobulinemia of most isotypes, variable B-cell defects, and the presence of recurrent bacterial infections.[accessedResource: MSH:D017074][accessDate: 2009-11-30]
GeneRIF:12759461
Acquired Agammaglobulinemia[accessedResource: NCIt:C26725][accessDate: 2009-11-30]
SNOMEDCT:23238000
Sporadic hypogammaglobulinemia[accessedResource: DOID:12177][accessDate: 2009-11-30]
NCIt:C26725
GeneRIF:16007086
GeneRIF:15817684
common variable immunodeficiency
DOID:12177
James Malone
CVID
GeneRIF:12100033
MSH:D017074
GeneRIF:15598813
GeneRIF:16007087
GeneRIF:15507387
ZFA:0000027
paired fin skeleton
OntologyMappingImporter following MAT:0000278
TAO:0000027
James Malone
MAT:0000278
BioportalImporter v.1.2
James Malone
Abdomen Skin[accessedResource: NCIt:C52758][accessDate: 2009-11-30]
NCIt:C52758
The skin or integument surrounding the abdomen.[accessedResource: NCIt:C52758][accessDate: 2009-11-30]
abdominal skin
ductus arteriosus
HP:0001643
FMA:79871
James Malone
Ele Holloway
ductus Botalli
2-amino-4,6-dimethyl-3-oxo-1-N,9-N-bis-[(18aS)-10c,14,17-trimethyl-5,8,12,15,18-pentaoxo-6c,13t-di(propan-2-yl)-18ar-hexadecahydro-1H-pyrrolo[2,1-i][1,4,7,10,13]oxatetraazacyclohexadecin-9c-yl]-3H-phenoxazine-1,9-dicarboxamide[accessedResource: CHEBI:27666][accessDate: 2009-11-30]
actinomycin D
An actinomycin that has formula C62H86N12O16.[accessedResource: CHEBI:27666][accessDate: 2009-11-30]
CHEBI:27666
James Malone
BioportalImporter v.1.2
CS57875 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158899&type=germplasm
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158899&type=germplasm
CS57875
trophozoite
IDOMAL:0000304
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
A developmental stage of the Plasmodium life cycle found within the erythrocyte.[accessedResource: IDOMAL:0000304][accessDate: 2009-11-30]
blastocyst
BTO:0001099
Blastosphere[accessedResource: NCIt:C13739][accessDate: 2009-11-30]
The modified blastula of a placental mammal.[accessedResource: BTO:0001099][accessDate: 2009-11-30]
NCIt:C13739
James Malone
BioportalImporter v.1.2
Blastula[accessedResource: NCIt:C13739][accessDate: 2009-11-30]
An embryo made up of two groups of cells. One group will develop into the fetus and the other will become the placenta.[accessedResource: NCIt:C13739][accessDate: 2009-11-30]
hemin
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:50385
chlorido(protoporphyrinato)iron(III)[accessedResource: CHEBI:50385][accessDate: 2009-11-30]
A heme b that has formula C34H32ClFeN4O4.[accessedResource: CHEBI:50385][accessDate: 2009-11-30]
Daudi
James Malone
Ele Holloway
A chalcogen that has formula Se.[accessedResource: CHEBI:27568][accessDate: 2009-11-30]
CHEBI:27568
selenium
James Malone
BioportalImporter v.1.2
MO_568
stimulus or stress design
Tomasz Adamusiak
NCI Metathesaurus: C0318594
Drosophila C virus
James Malone
A site is an entity which consists of a characteristic spatial shape in relation to some arrangement of other material entities.
Derived from BFO:site
James Malone
site
NCIt:C2985
Diabetes NOS[accessedResource: DOID:9351][accessDate: 2009-11-30]
James Malone
GeneRIF:12027924
GeneRIF:15699510
GeneRIF:15563983
GeneRIF:15699511
GeneRIF:12673582
GeneRIF:15639198
diabetes mellitus
GeneRIF:12783844
GeneRIF:15609025
GeneRIF:16098926
GeneRIF:11896938
SNOMEDCT:73211009
GeneRIF:15126243
GeneRIF:15699513
GeneRIF:12955714
MSH:D003920
GeneRIF:15251864
GeneRIF:15554360
GeneRIF:15790730
GeneRIF:12738401
GeneRIF:15281346
GeneRIF:15557196
GeneRIF:11822825
GeneRIF:14714273
GeneRIF:12062816
GeneRIF:14675060
GeneRIF:14716305
GeneRIF:15800961
GeneRIF:12679462
GeneRIF:12118252
GeneRIF:12062854
BioportalImporter v.1.2
GeneRIF:11774208
GeneRIF:15699509
GeneRIF:11912494
GeneRIF:15940393
GeneRIF:11947965
diabetes[accessedResource: NCIt:C2985][accessDate: 2009-11-30]
GeneRIF:12765847
GeneRIF:15476949
GeneRIF:14658759
GeneRIF:12536206
GeneRIF:12095538
GeneRIF:12753312
GeneRIF:12529387
GeneRIF:12738397
GeneRIF:12230824
GeneRIF:14998943
GeneRIF:11980626
GeneRIF:15662218
A heterogeneous group of disorders characterized by HYPERGLYCEMIA and GLUCOSE INTOLERANCE.[accessedResource: MSH:D003920][accessDate: 2009-11-30]
GeneRIF:12490143
GeneRIF:15355441
GeneRIF:12649573
GeneRIF:12012276
GeneRIF:16260427
GeneRIF:15699497
GeneRIF:11938023
GeneRIF:15516784
GeneRIF:15646011
A metabolic disorder characterized by abnormally high blood sugar levels due to diminished production of insulin or insulin resistance/desensitization.[accessedResource: NCIt:C2985][accessDate: 2009-11-30]
GeneRIF:16002993
GeneRIF:15221640
GeneRIF:12148086
GeneRIF:12207164
GeneRIF:15286433
GeneRIF:14654370
GeneRIF:12679473
GeneRIF:15258348
GeneRIF:15173029
GeneRIF:12748907
GeneRIF:12719374
GeneRIF:11882518
GeneRIF:15237707
GeneRIF:15156314
GeneRIF:15156315
GeneRIF:14674716
GeneRIF:15831366
GeneRIF:12639765
GeneRIF:11668623
GeneRIF:15128745
GeneRIF:15112906
DOID:9351
GeneRIF:12021129
GeneRIF:12787913
GeneRIF:12920574
GeneRIF:12706323
GeneRIF:15699512
GeneRIF:15538935
GeneRIF:14726620
GeneRIF:12898475
GeneRIF:12021133
GeneRIF:14631138
GeneRIF:12221327
GeneRIF:15046742
GeneRIF:12200076
GeneRIF:11916624
GeneRIF:14641003
GeneRIF:11916625
GeneRIF:12584444
GeneRIF:15959417
GeneRIF:12618277
Diabetes mellitus (disorder)[accessedResource: DOID:9351][accessDate: 2009-11-30]
GeneRIF:15625086
GeneRIF:15166380
GeneRIF:12574207
GeneRIF:16087164
GeneRIF:15123681
GeneRIF:12039697
GeneRIF:15367890
GeneRIF:14766207
GeneRIF:15797963
GeneRIF:14764811
GeneRIF:11796176
GeneRIF:12500218
GeneRIF:11888844
GeneRIF:15887858
ICD9:250
GeneRIF:12589429
GeneRIF:11875060
GeneRIF:15070960
drug
James Malone
BioportalImporter v.1.2
A hydroxyisoflavone that has formula C15H10O5.[accessedResource: CHEBI:28088][accessDate: 2009-11-30]
CHEBI:28088
5,7-dihydroxy-3-(4-hydroxyphenyl)-4H-chromen-4-one[accessedResource: CHEBI:28088][accessDate: 2009-11-30]
genistein
HCC2157
James Malone
obsolete_5-fluorouracil
James Malone
An organofluorine compound that has formula C4H3FN2O2.[accessedResource: CHEBI:46345][accessDate: 2009-11-30]
true
Ele Holloway
5-fluoropyrimidine-2,4(1H,3H)-dione[accessedResource: CHEBI:46345][accessDate: 2009-11-30]
CHEBI:46345
BioportalImporter v.1.2
1.8
duplicate class: use EFO_0001474
oropharynx
Oral part of pharynx[accessedResource: FMA:54879][accessDate: 2009-11-30]
James Malone
NCIt:C12762
BioportalImporter v.1.2
The part of the pharynx between the soft palate and the upper portion of the epiglottis.[accessedResource: NCIt:C12762][accessDate: 2009-11-30]
FMA:54879
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
FMAID:14559
gastric fundus
Fundus of stomach[accessedResource: FMAID:14559][accessDate: 2009-11-30]
Fundus gastricus (ventricularis)[accessedResource: FMAID:14559][accessDate: 2009-11-30]
GeneRIF:12528821
GeneRIF:15691826
James Malone
GeneRIF:15776280
GeneRIF:15509539
GeneRIF:14597108
GeneRIF:14642651
GeneRIF:15652414
GeneRIF:15069187
GeneRIF:14506936
GeneRIF:13678668
GeneRIF:12866199
GeneRIF:12770687
GeneRIF:12217886
GeneRIF:12437574
GeneRIF:15672551
GeneRIF:14676054
GeneRIF:12442272
A degenerative disorder affecting upper MOTOR NEURONS in the brain and lower motor neurons in the brain stem and SPINAL CORD. Disease onset is usually after the age of 50 and the process is usually fatal within 3 to 6 years. Clinical manifestations include progressive weakness, atrophy, FASCICULATION, hyperreflexia, DYSARTHRIA, dysphagia, and eventual paralysis of respiratory function. Pathologic features include the replacement of motor neurons with fibrous ASTROCYTES and atrophy of anterior SPINAL NERVE ROOTS and corticospinal tracts. (From Adams et al., Principles of Neurology, 6th ed, pp1089-94)[accessedResource: MSH:D000690][accessDate: 2009-11-30]
GeneRIF:12694394
GeneRIF:12644909
GeneRIF:12230304
GeneRIF:11854284
GeneRIF:12475980
GeneRIF:15789135
GeneRIF:15330338
GeneRIF:12127151
GeneRIF:15019581
GeneRIF:13129803
GeneRIF:15037546
GeneRIF:15326253
GeneRIF:14989597
amyotrophic lateral sclerosis
NCIt:C34373
GeneRIF:11675877
NIFSTD:birnlex_12566
GeneRIF:12783432
GeneRIF:12659845
GeneRIF:15109247
GeneRIF:15006704
GeneRIF:12448348
GeneRIF:12125045
GeneRIF:12210393
GeneRIF:12677446
ALS[accessedResource: DOID:332][accessDate: 2009-11-30]
GeneRIF:12235108
Lou Gehrig Disease[accessedResource: NCIt:C34373][accessDate: 2009-11-30]
GeneRIF:15350647
GeneRIF:15313203
GeneRIF:15233913
GeneRIF:15030390
GeneRIF:12270696
GeneRIF:12458194
GeneRIF:14970233
GeneRIF:12039658
GeneRIF:15753080
GeneRIF:12393885
MSH:D000690
GeneRIF:12480087
GeneRIF:15488469
GeneRIF:12441104
GeneRIF:15634772
GeneRIF:14991384
GeneRIF:12153483
Amyotrophic lateral sclerosis (disorder)[accessedResource: DOID:332][accessDate: 2009-11-30]
SNOMEDCT:86044005
GeneRIF:15829169
GeneRIF:12843244
GeneRIF:11991808
GeneRIF:16005901
GeneRIF:12972170
GeneRIF:11996514
GeneRIF:15546588
GeneRIF:12679596
GeneRIF:15264227
DOID:332
GeneRIF:12707786
GeneRIF:15657798
GeneRIF:14734542
GeneRIF:15184633
GeneRIF:11951178
GeneRIF:11854285
GeneRIF:12446576
GeneRIF:12138710
GeneRIF:12584731
GeneRIF:15837590
GeneRIF:16020530
GeneRIF:15623718
GeneRIF:12915461
GeneRIF:16114275
GeneRIF:15910777
GeneRIF:12502789
GeneRIF:15657392
GeneRIF:12614934
GeneRIF:14985749
GeneRIF:15465081
GeneRIF:15388334
GeneRIF:15126567
GeneRIF:14675609
GeneRIF:15076751
GeneRIF:11860274
GeneRIF:15033789
Motor neuron disease, bulbar[accessedResource: DOID:332][accessDate: 2009-11-30]
Tomasz Adamusiak
GeneRIF:12641746
GeneRIF:14596848
ICD9:335.20
GeneRIF:15978558
GeneRIF:14511332
GeneRIF:15048885
GeneRIF:12847526
GeneRIF:15475574
GeneRIF:12875980
GeneRIF:11943600
BioportalImporter v.1.2
GeneRIF:15557516
GeneRIF:12870272
GeneRIF:15568021
GeneRIF:14978393
GeneRIF:12730211
GeneRIF:15106121
GeneRIF:15094483
Mucinous Adenocarcinoma of Colon[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
BioportalImporter v.1.2
Colonic Colloid Adenocarcinoma[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Colloidal Colon Adenocarcinoma[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
NCIt:C7966
James Malone
Colloidal Adenocarcinoma of the Colon[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
DOID:3029
Colonic Mucinous Adenocarcinoma[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Colloidal Adenocarcinoma of Colon[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
An invasive adenocarcinoma of the colon characterized by the presence of pools of extracellular mucin. Malignant glandular epithelial cells are present in the mucin collections. Mucin constitutes more than 50% of the lesion.[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Colonic Colloidal Adenocarcinoma[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
colon mucinous adenocarcinoma
Colloid Adenocarcinoma of the Colon[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Mucinous Adenocarcinoma of the Colon[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Colloid Adenocarcinoma of Colon[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Colon Colloid Adenocarcinoma[accessedResource: NCIt:C7966][accessDate: 2009-11-30]
Connective tissue that forms the skeletal components of the body.
[Source: NCI Thesaurus C12366]
NCIt:C12366
FMAID:30317
BTO:0000140
James Malone
bone
MAT:0000299
The hard form of connective tissue that constitutes the majority of the skeleton of most vertebrates; it consists of an organic component (the cells and matrix) and an inorganic, or mineral, component; the matrix contains a framework of collagenous fibers and is impregnated with the mineral component, chiefly calcium phosphate (85 per cent) and calcium carbonate (10 per cent), which imparts the quality of rigidity to bone.[accessedResource: BTO:0000140][accessDate: 2009-11-30]
XAO:0000169
SAEL:10
BioportalImporter v.1.2
TAO:0001514
Bones[accessedResource: NCIt:C12366][accessDate: 2009-11-30]
EV:0100140
Osseous[accessedResource: NCIt:C12366][accessDate: 2009-11-30]
aldosterone
A 18-oxo steroid that has formula C21H28O5.[accessedResource: CHEBI:27584][accessDate: 2009-11-30]
CHEBI:27584
BioportalImporter v.1.2
11beta,21-dihydroxy-3,20-dioxopregn-4-en-18-al[accessedResource: CHEBI:27584][accessDate: 2009-11-30]
Ganglion inferius (Nervus vagus)[accessedResource: FMA:6230][accessDate: 2009-11-30]
FMA:6230
Vagus nerve inferior ganglion[accessedResource: FMA:6230][accessDate: 2009-11-30]
Vagus nerve nodose ganglion[accessedResource: FMA:6230][accessDate: 2009-11-30]
Tenth cranial nerve nodose ganglion[accessedResource: FMA:6230][accessDate: 2009-11-30]
James Malone
Ele Holloway
Inferior ganglion of vagus[accessedResource: FMA:6230][accessDate: 2009-11-30]
Nodose ganglion[accessedResource: FMA:6230][accessDate: 2009-11-30]
BioportalImporter v.1.2
inferior ganglion of vagus nerve
Precursor Lymphoid Neoplasm[accessedResource: NCIt:C7055][accessDate: 2009-11-30]
true
DOID:5600
ALL
obsolete_acute lymphoblastic leukemia
A neoplasm of immature malignant lymphocytes (lymphoblasts) committed to the B-cell or T-cell lineage. Neoplasms involving the bone marrow and the peripheral blood are called precursor lymphoblastic leukemias or acute lymphoblastic leukemias. Neoplasms involving primarily lymph nodes or extranodal sites are called lymphoblastic lymphomas. -- 2003
[Source: NCI Thesaurus C7055]
Precursor Lymphoblastic Lymphoma/Leukemia[accessedResource: NCIt:C7055][accessDate: 2009-11-30]
1.5
BioportalImporter v.1.2
James Malone
NCIt:C7055
Duplicate with acute lymphocytic leukemia (EFO_0000220)
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
distal portion of circumflex branch of left coronary artery
Second segment of circumflex branch of left coronary artery[accessedResource: FMAID:3906][accessDate: 2009-11-30]
Posterior segment of circumflex branch of left coronary artery[accessedResource: FMAID:3906][accessDate: 2009-11-30]
FMAID:3906
vertebral column
EMAPA:17214
backbone
SAEL:121
NIFSTD:sao1145756102
TAO:0000317
ZFA:0000317
Tomasz Adamusiak
James Malone
FMAID:13478
AAO:0000034
spine
MA:0000308
EHDAA:5049
tendon
Tissue which consists of fibroblasts, osteocytes or chondrocytes and intercellular matrix produced by these cells. Examples: bone (tissue), dense regular elastic tissue, areolar tissue, neuroglia, adipose tissue.[accessedResource: FMAID:9640][accessDate: 2009-11-30]
connective tissue
MAT:0000301
SAEL:23
fascia
EV:0100150
FMAID:9640
James Malone
BTO:0000421
The tissue which binds together and is the support of the various structures of the body. It is made up of fibroblasts, fibroglia, collagen fibrils, and elastic fibrils. It is derived from the mesoderm and in a broad sense includes the collagenous, elastic, mucous, reticular, osseous, and cartilaginous tissue. Some also include the blood in this group of tissues. Connective tissue is classified according to concentration of fibers as loose (areolar) and dense, the latter having more abundant fibers than the former.[accessedResource: BTO:0000421][accessDate: 2009-11-30]
Portion of connective tissue[accessedResource: FMAID:9640][accessDate: 2009-11-30]
XAO:0000173
TAO:0009189
BioportalImporter v.1.2
16-ketoestradiol
James Malone
Ele Holloway
CHEBI:34165
MO_227
Environmental stress is a treatment where some aspect of the environment is perturbed in order to stress the organism or culture, e.g. change in temperature, change in watering regime
change in temperature, change in watering regime
environmental stress
Tomasz Adamusiak
Jie Zheng
James Malone
James Malone
BioportalImporter v.1.2
GABAergic interneuron
interneuron
Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions.[accessedResource: CL:0000099][accessDate: 2009-11-30]
CL:0000099
epigallocatechin gallate
anal region
Organ with organ cavity which is continuous proximally with the rectum and distally terminates with the anus. Examples: There is only one anal canal.[accessedResource: FMAID:15703][accessDate: 2009-11-30]
EV:0100082
anus[accessedResource: MAT:0000042][accessDate: 2009-11-30]
XAO:0000244
EMAPA:16831
James Malone
FMAID:15703
FBbt:00005785
The anus is situated in a small area of membrane between the bases of the cerci.[accessedResource: TGMA:0001279][accessDate: 2009-11-30]
Anal canal viewed anatomically[accessedResource: FMAID:15703][accessDate: 2009-11-30]
MAT:0000042
ZFA:0000330
MA:0000328
TGMA:0001279
Anatomical anal canal[accessedResource: FMAID:15703][accessDate: 2009-11-30]
BioportalImporter v.1.2
SAEL:5
WBbt:0005774
Anal canal[accessedResource: FMAID:15703][accessDate: 2009-11-30]
in vivo design
MO_454
Tomasz Adamusiak
James Malone
skeletal muscle
EV:0100377
MAT:0000302
FMAID:5022
BioportalImporter v.1.2
skeletal muscle cell[accessedResource: BTO:0001103][accessDate: 2009-11-30]
XAO:0000174
EMAPA:17745
A usually voluntary muscle made up of elongated, multinucleated, transversely striated muscle fibers, having principally bony attachments.[accessedResource: BTO:0001103][accessDate: 2009-11-30]
BFBbt:00003259
SAEL:94
Nonparenchymatous organ that primarily consists of skeletal muscle tissue aggregated into macroscopic fasciculi by connective tissue; together with other muscles, it constitutes the muscular system. Examples: biceps, diaphragm, masseter, right third external intercostal muscle, external oblique, levator ani, serratus anterior.[accessedResource: FMAID:5022][accessDate: 2009-11-30]
EHDAA:5031
skeletal muscle system[accessedResource: MAT:0000302][accessDate: 2009-11-30]
BTO:0001103
pancreatic mesenchyme
Tomasz Adamusiak
Jie Zheng
2-[4-(2,2-dichlorocyclopropyl)phenoxy]-2-methylpropanoic acid[accessedResource: CHEBI:50867][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
A ring assembly that has formula C13H14Cl2O3.[accessedResource: CHEBI:50867][accessDate: 2009-11-30]
ciprofibrate
CHEBI:50867
colorectal cancer
colorectal adenocarcinoma
James Malone
BioportalImporter v.1.2
Tumors or cancer of the COLON or the RECTUM or both. Risk factors for colorectal cancer include chronic ULCERATIVE COLITIS; FAMILIAL POLYPOSIS COLI; exposure to ASBESTOS; and irradiation of the CERVIX UTERI.[accessedResource: MSH:D015179][accessDate: 2009-11-30]
MSH:D015179
DOID:9256
umbilical vein endothelial cell
primary microvascular endothelial cell
primary blood vessel endothelial cell
James Malone
blood vessel endothelial cell
CL:0000071
distal portion of anterior interventricular branch of left coronary artery
Distal portion of anterior descending branch of left coronary artery[accessedResource: FMAID:3884][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
FMAID:3884
pancreatic ductal adenocarcinoma
James Malone
Ele Holloway
DOID:3587
BioportalImporter v.1.2
The sensitive vascular inner mesodermic layer of the skin.[accessedResource: BTO:0000294][accessDate: 2009-11-30]
MAT:0000153
BTO:0000294
dermis
Dense irregular connective tissue which consists of a papillary layer and a reticular layer.[accessedResource: FMAID:70323][accessDate: 2009-11-30]
EMAPA:17527
James Malone
FMAID:70323
MA:0000152
EV:0100154
AAO:0000128
SAEL:27
XAO:0000217
ZFA:0001119
Respiratory Muscles[accessedResource: NCIt:C32824][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
intercostal muscle
NCIt:C32824
FMA:13354
1-benzofuran
CHEBI:35260
benzofuran
Ele Holloway
James Malone
A benzofuran that has formula C8H6O.[accessedResource: CHEBI:35260][accessDate: 2009-11-30]
BioportalImporter v.1.2
2,3-benzofuran
James Malone
Ele Holloway
NCIH2122
GeneRIF:15331795
ICD9:432.9
Unspecified intracranial hemorrhage[accessedResource: DOID:1126][accessDate: 2009-11-30]
SNOMEDCT:1386000
Intracranial hemorrhage NOS (disorder)[accessedResource: DOID:1126][accessDate: 2009-11-30]
MSH:D020300
intracranial hemorrhage NOS
DOID:1126
HEMORRHAGE INTRACRANIAL[accessedResource: DOID:1126][accessDate: 2009-11-30]
SNOMEDCT:195178005
Bleeding within the SKULL, including hemorrhages in the brain and the three membranes of MENINGES. The escape of blood often leads to the formation of HEMATOMA in the cranial epidural, subdural, and subarachnoid spaces.[accessedResource: MSH:D020300][accessDate: 2009-11-30]
Intracranial Hemorrhages[accessedResource: DOID:1126][accessDate: 2009-11-30]
Intracranial hemorrhage (disorder)[accessedResource: DOID:1126][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
XAO:0000238
SAEL:88
MAT:0000050
BioportalImporter v.1.2
EMAPA:17896
James Malone
TGMA:0001028
MA:0000336
FBbt:00005756
BTO:0001158
TADS:0000166
WBbt:0005773
rectum
EV:0100081
rectal sac[accessedResource: MAT:0000050][accessDate: 2009-11-30]
EHDAA:EHDAA\:5836
The terminal part of the intestine from the sigmoid flexure to the anus.[accessedResource: BTO:0001158][accessDate: 2009-11-30]
FMAID:14544
The bladder-like rectum is bounded by a layer of circular muscle fibres and by sparser longitudinal fibres.[accessedResource: TGMA:0001028][accessDate: 2009-11-30]
in vitro design
Tomasz Adamusiak
MO_347
BTO:0000759
liver
MA:0000358
XAO:0000133
James Malone
MAT:0000097
EMAPA:16846
TAO:0000123
FMAID:7197
EHDAA:2197
ZFA:0000123
EV:0100089
1: A large very vascular glandular organ of vertebrates that secretes bile and causes important changes in many of the substances contained in the blood (as by converting sugars into glycogen which it stores up until required and by forming urea).n2: Any of various large compound glands associated with the digestive tract of invertebrate animals and probably concerned with the secretion of digestive enzymes.[accessedResource: BTO:0000759][accessDate: 2009-11-30]
Lobular organ which has as its parts lobules connected to the biliary tree. Examples: There is only one liver.[accessedResource: FMAID:7197][accessDate: 2009-11-30]
MFO:0003060
BioportalImporter v.1.2
James Malone
Ele Holloway
BioportalImporter v.1.2
2,2-dichloro-N-[(1R,2R)-2-hydroxy-1-(hydroxymethyl)-2-(4-nitrophenyl)ethyl]acetamide[accessedResource: CHEBI:17698][accessDate: 2009-11-30]
chloramphenicol
CHEBI:17698
A dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and an alcohol function.[accessedResource: CHEBI:17698][accessDate: 2009-11-30]
FMAID:67681
pancreatic duct epithelium
Pancreatic ductal epithelium[accessedResource: FMAID:67681][accessDate: 2009-11-30]
Epithelium of pancreatic duct[accessedResource: FMAID:67681][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
James Malone
FBbt:00000210
anterior endoderm anlage
aorta endothelium
NCIt:C49190
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
Colonic Adenocarcinoma[accessedResource: NCIt:C4349][accessDate: 2009-11-30]
GeneRIF:15894926
Adenocarcinoma of Colon[accessedResource: NCIt:C4349][accessDate: 2009-11-30]
GeneRIF:14666619
GeneRIF:15546874
GeneRIF:15161648
BioportalImporter v.1.2
GeneRIF:12918105
James Malone
NCIt:C4349
GeneRIF:15517914
GeneRIF:15069532
GeneRIF:12019353
GeneRIF:15526283
An adenocarcinoma arising from the colon. It is more frequently seen in populations with a Western type diet and in patients with a history of chronic inflammatory bowel disease. Signs and symptoms include intestinal bleeding, anemia, and change in bowel habits. According to the degree of cellular differentiation, colonic adenocarcinomas are divided into well differentiated, moderately, and poorly differentiated. Morphologic variants include the mucinous adenocarcinoma and signet-ring adenocarcinoma. Lymphatic or hematogenous spread can occur early in the process and lead to systemic disease.[accessedResource: NCIt:C4349][accessDate: 2009-11-30]
Adenocarcinoma of the Colon[accessedResource: NCIt:C4349][accessDate: 2009-11-30]
GeneRIF:12878221
DOID:234
GeneRIF:15865210
GeneRIF:12383707
GeneRIF:11731423
colon adenocarcinoma
NCIt:C28147
embryo
James Malone
BioportalImporter v.1.2
embryo early (growth) stage
Embryologic[accessedResource: NCIt:C28147][accessDate: 2009-11-30]
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158895&type=germplasm
CS57871 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158895&type=germplasm
CS57871
raphe magnus
James Malone
Ele Holloway
EV:0100153
EMAPA:17528
FBbt:00005401
BioportalImporter v.1.2
AAO:0000143
James Malone
The outer epithelial layer of the external integument of the animal body that is derived from the embryonic epiblast; specifically: the outer nonsensitive and nonvascular layer of the skin of a vertebrate that overlies the dermis.[accessedResource: BTO:0000404][accessDate: 2009-11-30]
SAEL:35
FMAID:70596
TADS:0000109
MA:0000153
BTO:0000404
MAT:0000154
ZFA:0000105
epidermis
WBbt:0005733
GeneRIF:12671895
James Malone
GeneRIF:15351034
GeneRIF:14669317
MSH:D005756
Inflammation of the GASTRIC MUCOSA, a lesion observed in a number of unrelated disorders.[accessedResource: MSH:D005756][accessDate: 2009-11-30]
GeneRIF:15287151
GeneRIF:14536000
Gastritis unspecified (disorder)[accessedResource: DOID:4029][accessDate: 2009-11-30]
NCIt:C26780
Gastritis[accessedResource: NCIt:C26780][accessDate: 2009-11-30]
GeneRIF:12011009
Inflammation of the stomach.[accessedResource: NCIt:C26780][accessDate: 2009-11-30]
GeneRIF:16201065
Gastritis (disorder)[accessedResource: DOID:4029][accessDate: 2009-11-30]
GeneRIF:12519893
GeneRIF:11908710
GeneRIF:12488564
active gastritis
GeneRIF:15720413
GeneRIF:15383700
GeneRIF:12390304
SNOMEDCT:4556007
GeneRIF:16302981
GeneRIF:15216464
GeneRIF:12958020
Gastritis [Ambiguous][accessedResource: DOID:4029][accessDate: 2009-11-30]
BioportalImporter v.1.2
SNOMEDCT:196743006
DOID:4029
GeneRIF:16275761
yeast
Strain or line specific to yeast
James Malone
appendix
MA:00001540
MAT:0000287
FMAID:14542
EV:0100080
James Malone
A narrow blind tube usually about three or four inches (7.6 to 10.2 centimeters) long that extends from the cecum in the lower right-hand part of the abdomen, has much lymphoid wall tissue, normally communicates with the cavity of the cecum, and represents an atrophied terminal part of the cecum.[accessedResource: BTO:0000084][accessDate: 2009-11-30]
SAEL:7
BTO:0000084
Organ with organ cavity which is continuous proximally with the cecum and distally terminates in the tip of the appendix. Examples: There is only one appendix.[accessedResource: FMAID:14542][accessDate: 2009-11-30]
BioportalImporter v.1.2
Vermiform appendix[accessedResource: FMAID:14542][accessDate: 2009-11-30]
MO_734
Tomasz Adamusiak
hardware variation design
NCIH2107
James Malone
Ele Holloway
1,10-phenanthroline
CHEBI:44975
James Malone
Ele Holloway
BioportalImporter v.1.2
A phenanthroline that has formula C12H8N2.[accessedResource: CHEBI:44975][accessDate: 2009-11-30]
myxothiazol
CHEBI:25461
antennal primordium2
FBbt:00005537
James Malone
CHEBI:28694
A copper group element that has formula Cu.[accessedResource: CHEBI:28694][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
copper
ciliary ganglion
Tomasz Adamusiak
Jie Zheng
FMAID:6964
MAT:0000114
A serrated strip of gray matter under the medial border of the hippocampus and in its depths; it is an archaeocortex which develops along the edge of the hippocampal fissure and which consists of molecular, granular, and polymorphic layers.[accessedResource: BTO:0002496][accessDate: 2009-11-30]
NIFSTD:birnlex_1178
BioportalImporter v.1.2
Tomasz Adamusiak
dentate gyrus
MA:0000191
EMAPA:19148
SAEL:51
BTO:0002496
James Malone
EV:0100180
Carcinoma of colon (disorder)[accessedResource: DOID:1520][accessDate: 2009-11-30]
GeneRIF:14566823
colon carcinoma
NCIt:C4910
A malignant tumor usually arising from the epithelium lining the large intestinal mucosa. Colon carcinoma is one of the most common malignancies in both males and females, and is especially common in North America and Europe. Grossly, most colon carcinomas are polypoid or ulcerating lesions. Microscopically, adenocarcinoma is the most frequently seen morphologic subtype. Prognosis depends on the stage of the disease (depth of invasion, metastasis to regional/distal lymph nodes or other anatomic sites). -- 2004[accessedResource: NCIt:C4910][accessDate: 2009-11-30]
GeneRIF:12517779
Colon Cancer[accessedResource: NCIt:C4910][accessDate: 2009-11-30]
GeneRIF:15655830
GeneRIF:11731434
GeneRIF:15637741
GeneRIF:12149254
GeneRIF:12515621
GeneRIF:11819805
GeneRIF:16164044
GeneRIF:12847090
GeneRIF:12466967
GeneRIF:12427560
DOID:1520
GeneRIF:16199102
GeneRIF:12189558
GeneRIF:14691449
GeneRIF:12055189
GeneRIF:12090473
GeneRIF:15559761
GeneRIF:12664617
GeneRIF:15454490
GeneRIF:15750621
GeneRIF:12151344
GeneRIF:12820726
GeneRIF:16278666
GeneRIF:15259074
GeneRIF:12209584
GeneRIF:11920461
GeneRIF:14500642
GeneRIF:15688023
GeneRIF:14581351
James Malone
GeneRIF:15492751
Carcinoma of the Colon[accessedResource: NCIt:C4910][accessDate: 2009-11-30]
GeneRIF:14533006
GeneRIF:15942645
GeneRIF:14707484
Carcinoma of colon[accessedResource: DOID:1520][accessDate: 2009-11-30]
GeneRIF:16192633
GeneRIF:12957362
GeneRIF:12030384
GeneRIF:12670495
GeneRIF:15480430
GeneRIF:12697807
Colonic Carcinoma[accessedResource: DOID:1520][accessDate: 2009-11-30]
SNOMEDCT:269533000
GeneRIF:12210751
GeneRIF:12185585
GeneRIF:15632146
GeneRIF:14715257
BioportalImporter v.1.2
true
obsolete_bone MMHCC
Obsolete: No longer required in EFO
NCIt:C22682
James Malone
BioportalImporter v.1.2
Bone (MMHCC)[accessedResource: NCIt:C22682][accessDate: 2009-11-30]
carotid artery endothelium
Tomasz Adamusiak
Jie Zheng
James Malone
CS57870 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158894&type=germplasm
CS57870
http://www.arabidopsis.org/servlets/TairObject?id=1005158894&type=germplasm
acute erythroid leukemia
James Malone
BioportalImporter v.1.2
ICD9:207.00
ICD9:207.0
DOID:1239
feather
James Malone
Any of the light horny epidermal outgrowths that form the external covering of the body of birds and that consist of a shaft bearing on each side a series of barbs which bear barbules which in turn bear barbicels commonly ending in hooked hamuli and interlocking with the barbules of an adjacent barb to link the barbs into a continuous vane.[accessedResource: BTO:0000447][accessDate: 2009-11-30]
MAT:0000156
BTO:0000447
BioportalImporter v.1.2
(3R,4aS,5S,6S,6aS,10aS,10bR)-3-ethenyl-6-hydroxy-3,4a,7,7,10a-pentamethyl-1-oxododecahydro-1H-benzo[f]chromen-5-yl acetate[accessedResource: CHEBI:50295][accessDate: 2009-11-30]
A labdane diterpenoid that has formula C22H34O5.[accessedResource: CHEBI:50295][accessDate: 2009-11-30]
CHEBI:50295
1,9-dideoxyforskolin
James Malone
Ele Holloway
BioportalImporter v.1.2
James Malone
Ele Holloway
vegetative apex
NCIH2087
James Malone
Ele Holloway
iberin
Tomasz Adamusiak
ex vivo design
MO_808
Second segment of right coronary artery[accessedResource: FMAID:3832][accessDate: 2009-11-30]
Posterior segment of right coronary artery[accessedResource: FMAID:3832][accessDate: 2009-11-30]
FMAID:3832
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
distal portion of right coronary artery
antennal primordium1
James Malone
BioportalImporter v.1.2
FBbt:00005510
.[accessedResource: FBbt:00005510][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
parotid gland
Parotid[accessedResource: NCIt:C12427][accessDate: 2009-11-30]
The largest of the three paired salivary glands, located in front of the ear.[accessedResource: NCIt:C12427][accessDate: 2009-11-30]
NCIt:C12427
clofibric acid
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:34648
2-(4-chlorophenoxy)-2-methylpropanoic acid[accessedResource: CHEBI:34648][accessDate: 2009-11-30]
James Malone
smooth muscle
MAT:0000303
FBbt:00003525
Muscle tissue that lacks cross striations, that is made up of elongated spindle-shaped cells having a central nucleus, and that is found in vertebrate visceral structures (as the stomach and bladder) as thin sheets performing functions not subject to conscious control by the mind and in all or most of the musculature of invertebrates other than arthropods.[accessedResource: BTO:0001260][accessDate: 2009-11-30]
SAEL:97
EV:0100378
BTO:0001260
BioportalImporter v.1.2
XAO:0000175
267B1
James Malone
storage organ
MAT:0000366
James Malone
SKNDZ
James Malone
Ele Holloway
The process of treating a material with radiation
Tomasz Adamusiak
Jie Zheng
James Malone
irradiate
MO_770
4-[4-(4-chlorophenyl)-4-hydroxypiperidin-1-yl]-1-(4-fluorophenyl)butan-1-one[accessedResource: CHEBI:5613][accessDate: 2009-11-30]
CHEBI:5613
BioportalImporter v.1.2
haloperidol
A hydroxypiperidine that has formula C21H23ClFNO2.[accessedResource: CHEBI:5613][accessDate: 2009-11-30]
James Malone
Ele Holloway
DKMG
(1S)-2-{[(1E)-1-[(3R,4R,5S)-3-(acetyloxy)-4-hydroxy-1-azabicyclo[3.1.0]hex-2-ylidene]-2-{[(1Z)-1-(hydroxymethylidene)-2-oxopropyl]amino}-2-oxoethyl]amino}-1-[(2S)-2-methyloxiran-2-yl]-2-oxoethyl 3-methoxy-5-methylnaphthalene-1-carboxylate[accessedResource: CHEBI:50862][accessDate: 2009-11-30]
obsolete_azinomycin B
1.7
James Malone
true
Ele Holloway
azinomycin B[accessedResource: CHEBI:50862][accessDate: 2009-11-30]
A naphthalene that has formula C31H33N3O11.[accessedResource: CHEBI:50862][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:50862
duplicated use class EFO_0002005
BioportalImporter v.1.2
petal
MAT:0000354
James Malone
The often showy flower component attached just inside the sepals; petals are usually colorful to attract pollinators.[accessedResource: BTO:0001040][accessDate: 2009-11-30]
BTO:0001040
PO:0009032
C4II
James Malone
Ele Holloway
CL:0000101
James Malone
Ele Holloway
sensory neuron
James Malone
Ele Holloway
NCIH2081
BTO:0002246
EV:0100188
FMAID:61835
BioportalImporter v.1.2
Nucleus of brain which is located medially to the putamen and laterally to the internal capsule.[accessedResource: FMAID:61835][accessDate: 2009-11-30]
James Malone
The smaller and more medial part of the lentiform nucleus of the brain, separated from the putamen by the lateral medullary lamina. In official anatomic nomenclature, it is divided by the medial medullary lamina into two parts, lateral and medial, both of which have extensive connections with the corpus striatum, thalamus, and mesencephalon.[accessedResource: BTO:0002246][accessDate: 2009-11-30]
Tomasz Adamusiak
NIFSTD:birnlex_1234
MA:0000890
globus pallidus
MAT:0000510
Paleostriatum[accessedResource: FMAID:61835][accessDate: 2009-11-30]
claw[accessedResource: MAT:0000158][accessDate: 2009-11-30]
MA:0002703
BioportalImporter v.1.2
nail
EMAPA:18734
EV:0100159
Nail plate[accessedResource: FMAID:54326][accessDate: 2009-11-30]
FMAID:54326
James Malone
MAT:0000158
EV:0100450
Organ part which is continuous with the cecum proximally and the transverse colon distally.[accessedResource: FMAID:14545][accessDate: 2009-11-30]
FMAID:14545
ascending colon
James Malone
The portion of the colon between the cecum and the right colic flexure.[accessedResource: BTO:0000270][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0000270
MAT:0000311
A dicarboxylic acid amide that has formula C2H3NO3.[accessedResource: CHEBI:18058][accessDate: 2009-11-30]
BioportalImporter v.1.2
oxamic acid
CHEBI:18058
CL:0000775
neutrophilic leukocyte[accessedResource: CL:0000775][accessDate: 2009-11-30]
BioportalImporter v.1.2
Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes.[accessedResource: CL:0000775][accessDate: 2009-11-30]
neutrophil leukocyte[accessedResource: CL:0000775][accessDate: 2009-11-30]
James Malone
Ele Holloway
neutrophilic leucocyte[accessedResource: CL:0000775][accessDate: 2009-11-30]
neutrophil
neutrophil leucocyte[accessedResource: CL:0000775][accessDate: 2009-11-30]
neutrocyte[accessedResource: CL:0000775][accessDate: 2009-11-30]
Tomasz Adamusiak
A benign neuroblastic tumor of the sympathetic nervous system that occurs in childhood. Ganglioneuroma typically arises from the sympathetic trunk in the mediastinum. Histologic features include spindle cell proliferation (resembling a neurofibroma) and the presence of large ganglion cells. Common presenting features include a palpable abdominal mass, hepatomegaly, and a thoracic mass detected on routine chest X-ray.[accessedResource: NCIt:C3049][accessDate: 2009-11-30]
James Malone
NIFSTD:birnlex_12617
ganglioneuroma
NCIt:C3049
BioportalImporter v.1.2
Ganglioneuroma (Schwannian Stroma-Dominant)[accessedResource: NCIt:C3049][accessDate: 2009-11-30]
CHEBI:28073
chromium
James Malone
BioportalImporter v.1.2
A chromium group element that has formula Cr.[accessedResource: CHEBI:28073][accessDate: 2009-11-30]
James Malone
Ele Holloway
DMS114
Tomasz Adamusiak
BioportalImporter v.1.2
oligodendrocyte
NIFSTD:sao844118448
CL:0000128
A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system.[accessedResource: CL:0000128][accessDate: 2009-11-30]
LbetaT2
MCC:0000292
James Malone
Ele Holloway
BioportalImporter v.1.2
Monophasic Sarcoma of Synovium[accessedResource: NCIt:C6534][accessDate: 2009-11-30]
NCIt:C6534
DOID:5495
Monophasic Sarcoma of the Synovium[accessedResource: NCIt:C6534][accessDate: 2009-11-30]
James Malone
monophasic synovial sarcoma
A synovial sarcoma characterized by the presence of an epithelial or a spindle cell component only.[accessedResource: NCIt:C6534][accessDate: 2009-11-30]
James Malone
GM12006
IBD[accessedResource: DOID:9778][accessDate: 2009-11-30]
ICD9:564.1
IBS[accessedResource: DOID:9778][accessDate: 2009-11-30]
Irritable colon[accessedResource: DOID:9778][accessDate: 2009-11-30]
irritable bowel syndrome
BioportalImporter v.1.2
SNOMEDCT:10743008
Irritable bowel - IBS[accessedResource: DOID:9778][accessDate: 2009-11-30]
MSH:D043183
GeneRIF:15188158
Irritable colon - Irritable bowel syndrome[accessedResource: DOID:9778][accessDate: 2009-11-30]
James Malone
GeneRIF:15509739
GeneRIF:15232358
GeneRIF:11877320
Psychogenic IBS[accessedResource: DOID:9778][accessDate: 2009-11-30]
GeneRIF:15633223
A disorder with chronic or recurrent colonic symptoms without a clearcut etiology. This condition is characterized by chronic or recurrent ABDOMINAL PAIN, bloating, MUCUS in FECES, and an erratic disturbance of DEFECATION.[accessedResource: MSH:D043183][accessDate: 2009-11-30]
DOID:9778
SKNEP1
James Malone
Ele Holloway
267B1 Ki-ras
James Malone
PO:0009031
MAT:0000355
James Malone
BioportalImporter v.1.2
One of the modified leaves comprising a calyx.[accessedResource: BTO:0001547][accessDate: 2009-11-30]
sepal
BTO:0001547
growth hormone
BioportalImporter v.1.2
CHEBI:37845
A hormone that specifically regulates growth.[accessedResource: CHEBI:37845][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0001432
vascular tissue
James Malone
MAT:0000362
The supportive and conductive tissue in plants, consisting of xylem and phloem.[accessedResource: BTO:0001432][accessDate: 2009-11-30]
PO:0009015
NCIH2052
James Malone
Ele Holloway
James Malone
Ele Holloway
(9R,13R)-12-oxo-phytodienoic acid
CHEBI:34005
OPDA
12-oxophytodienoic acid
James Malone
CS57641 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158665&type=germplasm
CS57641
http://www.arabidopsis.org/servlets/TairObject?id=1005158665&type=germplasm
MAT:0000450
James Malone
MA:0000184
basal ganglion
Any of four deeply placed masses of gray matter (as the amygdala) in each cerebral hemisphere. Location: The basal ganglion is located deep within the cerebral hemispheres in the telencephalon region of the brain. It consists of the corpus stratium, subthalamic nucleus and the substantia nigra.[accessedResource: BTO:0000235][accessDate: 2009-11-30]
Tomasz Adamusiak
BTO:0000235
Basal ganglia[accessedResource: FMAID:84013][accessDate: 2009-11-30]
basal nucleus\][accessedResource: MAT:0000450][accessDate: 2009-11-30]
BioportalImporter v.1.2
FMAID:84013
Set of basal ganglia[accessedResource: FMAID:84013][accessDate: 2009-11-30]
Basal ganglia set[accessedResource: FMAID:84013][accessDate: 2009-11-30]
NIFSTD:birnlex_826
MAT:0000159
pigment
BioportalImporter v.1.2
AAO:0000430
pigmentation
James Malone
Tomasz Adamusiak
NIFSTD:sao1231384859
MFO:0003360
pigment cells[accessedResource: MAT:0000159][accessDate: 2009-11-30]
ZFA:0009090
right arm
James Malone
Right is a geometric modifier describing something which is to the right of the median of an organism or organism part, for example right arm.
MAT:0000492
right
C4I
James Malone
Ele Holloway
James Malone
HCC1187
An acetamide that has formula C8H9NO2.[accessedResource: CHEBI:46195][accessDate: 2009-11-30]
CHEBI:46195
James Malone
BioportalImporter v.1.2
N-(4-hydroxyphenyl)acetamide[accessedResource: CHEBI:46195][accessDate: 2009-11-30]
paracetamol
oligoastroglioma
Mixed Astrocytic-Oligodendroglial Neoplasm[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
WHO grade II Mixed Glioma[accessedResource: DOID:7912][accessDate: 2009-11-30]
BioportalImporter v.1.2
DOID:7912
A relatively slow-growing glioma that is derived from oligodendrocytes and tends to occur in the cerebral hemispheres, thalamus, or lateral ventricle. They may present at any age, but are most frequent in the third to fifth decades, with an earlier incidence peak in the first decade. Histologically, these tumors are encapsulated, relatively avascular, and tend to form cysts and microcalcifications. Neoplastic cells tend to have small round nuclei surrounded by unstained nuclei. The tumors may vary from well-differentiated to highly anaplastic forms. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, p2052; Adams et al., Principles of Neurology, 6th ed, p655)[accessedResource: MSH:D009837][accessDate: 2009-11-30]
Mixed Astrocytoma-Oligodendroglioma[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
NCIt:C4050
Mixed Oligo-Astrocytoma[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
oligoastrocytoma
James Malone
A WHO grade II tumor composed of a conspicuous mixture of two distinct neoplastic cell types morphologically resembling the tumor cells in oligodendroglioma and diffuse astrocytoma. (WHO)
[Source: NCI Thesaurus C4050]
Mixed Astrocytic-Oligodendroglial Tumor[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
MSH:D009837
SNOMEDCT:255028004
Follicular Cancer of the Thyroid Gland[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
Thyroid Adenocarcinoma[accessedResource: DOID:3962][accessDate: 2009-11-30]
Follicular Carcinoma of the Thyroid Gland[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
SNOMEDCT:28173006
BioportalImporter v.1.2
A differentiated adenocarcinoma arising from the follicular cells of the thyroid gland. The nuclear features which characterise the thyroid gland papillary carcinoma are absent. It is linked to radiation and comprises approximately 10% to 15% of thyroid cancers. Clinically, it usually presents as a solitary mass in the thyroid gland. It is generally unifocal and thickly encapsulated and shows invasion of the capsule or the vessels. Diagnostic procedures include: thyroid function tests, thyroid radioisotope scanning, thyroid ultrasound and fine needle biopsy. Treatment options include: partial or complete thyroidectomy. Adjuvant treatment options include: radioiodine therapy, TSH suppression and external radiation.
[Source: NCI Thesaurus C8054]
Follicular adenocarcinoma, well differentiated (morphologic abnormality)[accessedResource: DOID:3962][accessDate: 2009-11-30]
Follicular Cancer of Thyroid Gland[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
Follicular Carcinoma[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
Follicular Carcinoma of Thyroid Gland[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
GeneRIF:14666683
Follicular Adenocarcinoma[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
Follicular thyroid carcinoma (disorder)[accessedResource: DOID:3962][accessDate: 2009-11-30]
Follicular Carcinoma of the Thyroid[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
Follicular Carcinoma of Thyroid[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
GeneRIF:14568171
An adenocarcinoma of the thyroid gland, in which the cells are arranged in the form of follicles. (From Dorland, 27th ed)[accessedResource: MSH:D018263][accessDate: 2009-11-30]
Follicular Cancer of Thyroid[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
Well-Differentiated Follicular Adenocarcinoma[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
SNOMEDCT:189642005
An adenocarcinoma arising from the follicular cells of the thyroid gland. According to the degree of differentiation, it is classified either as differentiated carcinoma (extensive evidence of follicular cell differentiation), or poorly differentiated carcinoma (limited evidence of follicular cell differentiation). (NCI05)[accessedResource: NCIt:C27380][accessDate: 2009-11-30]
Thyroid Gland Adenocarcinoma[accessedResource: NCIt:C27380][accessDate: 2009-11-30]
follicular thyroid carcinoma
DOID:3962
Follicular Cancer of the Thyroid[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
MSH:D018263
Well-Differentiated Follicular Carcinoma[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
NCIt:C27380
Follicular adenocarcinoma (morphologic abnormality)[accessedResource: DOID:3962][accessDate: 2009-11-30]
Thyroid Gland Follicular Carcinoma[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
follicular thyroid cancer[accessedResource: NCIt:C8054][accessDate: 2009-11-30]
SNOMEDCT:5257006
NCIt:C8054
James Malone
BioportalImporter v.1.2
MAT:0000312
James Malone
FMAID:14546
transverse colon
BTO:0000272
The portion of the colon that runs transversely across the upper part of the abdomen, from the right to the left colic flexure.[accessedResource: BTO:0000272][accessDate: 2009-11-30]
James Malone
FBbt:00001720
embryonic corpus cardiacum
James Malone
UBOC1
O,O-diethyl O-(3,5,6-trichloropyridin-2-yl) phosphorothioate[accessedResource: CHEBI:34631][accessDate: 2009-11-30]
CHEBI:34631
An organochlorine acaricide that has formula C9H11Cl3NO3PS.[accessedResource: CHEBI:34631][accessDate: 2009-11-30]
chlorpyrifos
James Malone
BioportalImporter v.1.2
myeloid progenitor cell
CL:0000839
Tomasz Adamusiak
BioportalImporter v.1.2
A progenitor cell of any myeloid lineage, potentially multipotent.[accessedResource: CL:0000839][accessDate: 2009-11-30]
DMS153
James Malone
Ele Holloway
GM12005
James Malone
CL:0000842
BTO:0000878
James Malone
BioportalImporter v.1.2
mononuclear cell
A leukocyte with a single non-segmented nucleus in the mature form.[accessedResource: CL:0000842][accessDate: 2009-11-30]
A cell having only one nucleus, especially: MONOCYTE.[accessedResource: BTO:0000878][accessDate: 2009-11-30]
MCC:0000290
BioportalImporter v.1.2
LNCAP
Human prostate carcinoma, established from the left supraclavicular lymph node metastasis from a 50-year-old man with prostate carcinoma in 1977; cells were described to be androgen-sensitive.[accessedResource: BTO:0001321][accessDate: 2009-11-30]
Ele Holloway
James Malone
BTO:0001321
CHEBI:22986
calcium ionophore
James Malone
Ele Holloway
MAT:0000518
James Malone
plant developmental tissue
left
James Malone
left arm
MAT:0000489
Left is a geometric modifier describing something which is to the left of the median of an organism or organism part, for example left arm.
James Malone
Ele Holloway
SKMES1
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158661&type=germplasm
CS57637 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158661&type=germplasm
CS57637
James Malone
Infiltrating Ductal and Lobular Carcinoma[accessedResource: NCIt:C7688][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C7688
An invasive ductal breast carcinoma associated with a lobular carcinomatous component. The lobular carcinomatous component may be in situ or invasive.[accessedResource: NCIt:C7688][accessDate: 2009-11-30]
invasive ductal and lobular carcinoma
Invasive Duct and Lobular Carcinoma[accessedResource: NCIt:C7688][accessDate: 2009-11-30]
DOID:6583
Multidisciplinary study done at the population level or among the population groups, generally to find the cause, incidence or spread of the disease or to see the response to the treatment, nutrition or environment.[accessedResource: NCIt:C15716][accessDate: 2009-11-30]
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
NCIt:C15716
population based study
Population Study [accessedResource: NCI Thesaurus:C15716][accessDate: 2009-09-24]
FMAID:53667
EMAPA:17529
EV:0100157
MA:0000155
James Malone
BioportalImporter v.1.2
MAT:0000160
EMAPA:18769
hair
1: A slender threadlike outgrowth of the epidermis of an animal; especially: one of the usually pigmented filaments that form the characteristic coat of a mammal.n2: The hairy covering of an animal or a body part; especially: the coating of hairs on a human head.[accessedResource: BTO:0001501][accessDate: 2009-11-30]
BTO:0001501
vibrissa[accessedResource: MAT:0000160][accessDate: 2009-11-30]
(SP-4-2)-diamminedichloridoplatinum[accessedResource: CHEBI:27899][accessDate: 2009-11-30]
(SP-4-2)-diamminedichloroplatinum[accessedResource: CHEBI:27899][accessDate: 2009-11-30]
cisplatin
James Malone
A platinum-containing anticancer drug that interacts with, and forms cross-links between, DNA and proteins. It is used as a neoplasm inhibitor to treat solid tumours, primarily of the testis and ovary.[accessedResource: CHEBI:27899][accessDate: 2009-11-30]
cis-diamminedichloridoplatinum(II)[accessedResource: CHEBI:27899][accessDate: 2009-11-30]
cis-diamminedichloroplatinum(II)[accessedResource: CHEBI:27899][accessDate: 2009-11-30]
CHEBI:27899
BioportalImporter v.1.2
NCIH2030
James Malone
Ele Holloway
One of the centrally-located portions of the brain affected by Huntington's Disease. Speech and swallowing problems arise when this region and another region called the putamen are affected.[accessedResource: BTO:0000211][accessDate: 2009-11-30]
BTO:0000211
Caudatus[accessedResource: FMAID:61833][accessDate: 2009-11-30]
NIFSTD:birnlex_1373
MA:0000893
FMAID:61833
Nucleus Caudatus[accessedResource: NCIt:C12451][accessDate: 2009-11-30]
An elongated gray mass of the neostriatum located adjacent to the lateral ventricle of the brain. (MeSH)
[Source: NCI Thesaurus C12451]
Nucleus of brain which is an elongated crescent-shaped mass lying parallel and adjacent to the lateral ventricle throughout its extent.[accessedResource: FMAID:61833][accessDate: 2009-11-30]
caudate nucleus
EV:0100185
James Malone
MAT:0000513
Tomasz Adamusiak
NCIt:C12451
EMAPA:18207
BioportalImporter v.1.2
James Malone
Ele Holloway
C3A
BTO:0001639
BioportalImporter v.1.2
Any small part of the embryo or adult metazoon more or less resembling the bud of a plant and presumed to have potential for growth and differentiation.[accessedResource: BTO:0001639][accessDate: 2009-11-30]
James Malone
PO:0000055
MAT:0000229
bud
James Malone
UACC812
James Malone
FBbt:00001719
embryonic corpus allatum
SNOMEDCT:69515008
A neuroblastic tumor characterized by the presence of neuroblastic cells, ganglion cells, and a stroma with Schwannian differentiation constituting more than fifty-percent of the tumor volume. There are two histologic subtypes identified: ganglioneuroblastoma, intermixed and ganglioneuroblastoma, and nodular.
[Source: NCI Thesaurus C3790]
James Malone
NIFSTD:birnlex_12633
BioportalImporter v.1.2
NCIt:C3790
Ganglioneuroblastoma (morphologic abnormality)[accessedResource: DOID:4163][accessDate: 2009-11-30]
GeneRIF:12185600
ganglioneuroblastoma
MSH:D018305
A neuroblastic tumor characterized by the presence of neuroblastic cells, ganglion cells, and a stroma with Schwannian differentiation constituting more than fifty-percent of the tumor volume. There are two histologic subtypes identified: ganglioneuroblastoma, intermixed and ganglioneuroblastoma, nodular.[accessedResource: NCIt:C3790][accessDate: 2009-11-30]
A moderately malignant neoplasm composed of primitive neuroectodermal cells dispersed in myxomatous or fibrous stroma intermixed with mature ganglion cells. It may undergo transformation into a neuroblastoma. It arises from the sympathetic trunk or less frequently from the adrenal medulla, cerebral cortex, and other locations. Cervical ganglioneuroblastomas may be associated with HORNER SYNDROME and the tumor may occasionally secrete vasoactive intestinal peptide, resulting in chronic diarrhea.[accessedResource: MSH:D018305][accessDate: 2009-11-30]
Tomasz Adamusiak
DOID:4163
FMAID:14547
MAT:0000313
The portion of the colon between the left colic flexure and the sigmoid colon at the pelvic brim; the portion of the descending colon lying in the left iliac fossa is sometimes called the iliac colon.[accessedResource: BTO:0000641][accessDate: 2009-11-30]
James Malone
BTO:0000641
descending colon
BioportalImporter v.1.2
Oligoastrocytoma[accessedResource: DOID:7912][accessDate: 2009-11-30]
Mixed Astrocytoma-Oligodendroglioma[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
NCIt:C4050
Duplicate with oligoastrocytoma (EFO_0000630) use this instead
James Malone
BioportalImporter v.1.2
Mixed Astrocytic-Oligodendroglial Neoplasm[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
WHO grade II Mixed Glioma[accessedResource: DOID:7912][accessDate: 2009-11-30]
MSH:D009837
DOID:7912
A WHO grade II tumor composed of a conspicuous mixture of two distinct neoplastic cell types morphologically resembling the tumor cells in oligodendroglioma and diffuse astrocytoma. (WHO)
[Source: NCI Thesaurus C4050]
Mixed Oligo-Astrocytoma[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
obsolete_oligoastroglioma
1.5
true
Mixed Astrocytic-Oligodendroglial Tumor[accessedResource: NCIt:C4050][accessDate: 2009-11-30]
A relatively slow-growing glioma that is derived from oligodendrocytes and tends to occur in the cerebral hemispheres, thalamus, or lateral ventricle. They may present at any age, but are most frequent in the third to fifth decades, with an earlier incidence peak in the first decade. Histologically, these tumors are encapsulated, relatively avascular, and tend to form cysts and microcalcifications. Neoplastic cells tend to have small round nuclei surrounded by unstained nuclei. The tumors may vary from well-differentiated to highly anaplastic forms. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, p2052; Adams et al., Principles of Neurology, 6th ed, p655)[accessedResource: MSH:D009837][accessDate: 2009-11-30]
An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement.[accessedResource: CL:0000100][accessDate: 2009-11-30]
motor neuron
Tomasz Adamusiak
BioportalImporter v.1.2
motoneuron[accessedResource: CL:0000100][accessDate: 2009-11-30]
NIFSTD:sao1460710779
CL:0000100
James Malone
Ele Holloway
MCF-7aro
CHEBI:27027
James Malone
micronutrient
CHEBI:27027
Myeloid mononuclear recirculating leukocyte that can act as a precursor of tissue macrophages, osteoclasts and some populations of tissue dendritic cells.[accessedResource: CL:0000576][accessDate: 2009-11-30]
monocyte
BioportalImporter v.1.2
A mononuclear phagocytic leukocyte, 13 to 25 mm in diameter, with an ovoid or kidney-shaped nucleus, containing lacy, linear chromatin and abundant gray-blue cytoplasm filled with fine reddish and azurophilic granules. Formed in the bone marrow from promonocytes, monocytes are transported to tissues such as the lung and liver, where they develop into macrophages.[accessedResource: BTO:0000876][accessDate: 2009-11-30]
CL:0000576
naive
BTO:0000876
James Malone
DG75
James Malone
Ele Holloway
CHEBI:28277
brassinolide
A brassinosteroid that has formula C28H48O6.[accessedResource: CHEBI:28277][accessDate: 2009-11-30]
(22R,23R)-2alpha,3alpha,22,23-tetrahydroxy-7a-homo-7-oxa-5alpha-campestan-6-one[accessedResource: CHEBI:28277][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
James Malone
Invasive Lobular Adenocarcinoma[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
Invasive Lobular Carcinoma, Classic Type[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
Invasive Lobular Breast Carcinoma[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
An infiltrating lobular adenocarcinoma. The malignant cells lack cohesion and are arranged individually or in a linear manner (Indian files), or as narrow trabeculae within the stroma. The malignant cells are usually smaller than those of ductal carcinoma, are less pleomorphic, and have fewer mitotic figures.[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
Invasive Lobular Carcinoma of Breast[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
Infiltrating Lobular Breast Carcinoma[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
Classic Invasive Lobular Carcinoma[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
BioportalImporter v.1.2
Invasive Lobular Carcinoma of the Breast[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
infiltrating lobular carcinoma
Infiltrating Lobular Carcinoma of Breast[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
Infiltrating Lobular Adenocarcinoma[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
invasive lobular carcinoma
DOID:3460
NCIt:C7950
Infiltrating Lobular Carcinoma of the Breast[accessedResource: NCIt:C7950][accessDate: 2009-11-30]
James Malone
Ele Holloway
SKNAS
plant reproductive system
James Malone
MAT:0000514
James Malone
MCC:0000380
Human prostate carcinoma cell line; established from the bone marrow metastasis isolated post-mortem from a 62-year-old Caucasian man with grade IV prostate cancer (poorly differentiated adenocarcinoma) after androgen suppression therapy; described to form tumors in nude mice, to grow in soft agar, and to be unresponsive to androgen treatment.[accessedResource: BTO:0001061][accessDate: 2009-11-30]
Ele Holloway
BTO:0001061
PC-3
PC3
BioportalImporter v.1.2
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158655&type=germplasm
CS57631 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158655&type=germplasm
CS57631
MAT:0000242
BioportalImporter v.1.2
ZFA:0001306
pharyngeal arch
James Malone
One of a series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of a vertebrate embryo, consist typically of a curved segmented bar or rod on each side meeting the contralateral bar or rod at the ventral end, and correspond to the gill arches of fishes and amphibians.[accessedResource: BTO:0001785][accessDate: 2009-11-30]
BTO:0001785
lateral
Lateral is a geometric modifier describing something which is of or pertaining to the side.
MAT:0000488
James Malone
NCIH2009
James Malone
Ele Holloway
C33A
James Malone
Ele Holloway
PO:0009046
BioportalImporter v.1.2
MAT:0000231
flower
James Malone
The reproductive structure of the anthophyta or angiosperms.[accessedResource: BTO:0000469][accessDate: 2009-11-30]
BTO:0000469
accumbens nucleus
NCIt:C52733
MA:0000892
FMAID:61889
A nucleus forming the floor of the caudal part of the anterior prolongation of the lateral ventricle of the brain.[accessedResource: BTO:0001862][accessDate: 2009-11-30]
nucleus accumbens whole
BioportalImporter v.1.2
Colliculus of caudate nucleus[accessedResource: FMAID:61889][accessDate: 2009-11-30]
MAT:0000512
James Malone
Nucleus accumbens septi[accessedResource: FMAID:61889][accessDate: 2009-11-30]
BTO:0001862
BioportalImporter v.1.2
James Malone
30-ethyl-33-[(4E)-1-hydroxy-2-methylhex-4-en-1-yl]-1,4,7,10,12,15,19,25,28-nonamethyl-6,9,18,24-tetrakis(2-methylpropyl)-3,21-bis(propan-2-yl)-1,4,7,10,13,16,19,22,25,28,31-undecaazacyclotritriacontane-2,5,8,11,14,17,20,23,26,29,32-undecone[accessedResource: CHEBI:4031][accessDate: 2009-11-30]
A homodetic cyclic peptide that has formula C62H111N11O12.[accessedResource: CHEBI:4031][accessDate: 2009-11-30]
cyclosporin A
CHEBI:4031
SNOMEDCT:408647009
Adenocarcinoma of stomach (disorder)[accessedResource: DOID:3717][accessDate: 2009-11-30]
Stomach Adenocarcinoma[accessedResource: DOID:3717][accessDate: 2009-11-30]
NCIt:C4004
BioportalImporter v.1.2
Adenocarcinoma of Stomach[accessedResource: NCIt:C4004][accessDate: 2009-11-30]
gastric adenocarcinoma
DOID:3717
An adenocarcinoma arising from the stomach glandular epithelium. Gastric adenocarcinoma is primarily a disease of older individuals, most commonly develops after a long period of atrophic gastritis and is strongly associated with Helicobacter Pylori infection. The lack of early symptoms often delays the diagnosis of gastric cancer. The majority of patients present with advanced tumors which have poor rates of curability. Microscopically, two important histologic types of gastric adenocarcinoma are recognized: the intestinal and diffuse type. The overall prognosis of gastric adenocarcinomas is poor, even in patients who receive a "curative" resection (adapted from Sternberg's Surgical Pathology, 3rd ed., 1999).
[Source: NCI Thesaurus C4004]
James Malone
An adenocarcinoma arising from the stomach glandular epithelium. Gastric adenocarcinoma is primarily a disease of older individuals, most commonly develops after a long period of atrophic gastritis and is strongly associated with Helicobacter Pylori infection. The lack of early symptoms often delays the diagnosis of gastric cancer. The majority of patients present with advanced tumors which have poor rates of curability. Microscopically, two important histologic types of gastric adenocarcinoma are recognized: the intestinal and diffuse type. The overall prognosis of gastric adenocarcinomas is poor, even in patients who receive a "curative" resection (adapted from Sternberg's Surgical Pathology, 3rd ed., 1999).[accessedResource: NCIt:C4004][accessDate: 2009-11-30]
Adenocarcinoma of the Stomach[accessedResource: NCIt:C4004][accessDate: 2009-11-30]
FBbt:00001056
James Malone
embryonic central nervous system
MCCAR
James Malone
Ele Holloway
U937
James Malone
James Malone
sigmoid colon
BTO:0000645
MAT:0000314
The S-shaped part of the colon which lies in the pelvis, extending from the pelvic brim to the third segment of the sacrum, and continuous above with the descending (or iliac) colon and below with the rectum.[accessedResource: BTO:0000645][accessDate: 2009-11-30]
FMAID:14548
BioportalImporter v.1.2
GeneRIF:15834925
A relatively slow-growing glioma that is derived from oligodendrocytes and tends to occur in the cerebral hemispheres, thalamus, or lateral ventricle. They may present at any age, but are most frequent in the third to fifth decades, with an earlier incidence peak in the first decade. Histologically, these tumors are encapsulated, relatively avascular, and tend to form cysts and microcalcifications. Neoplastic cells tend to have small round nuclei surrounded by unstained nuclei. The tumors may vary from well-differentiated to highly anaplastic forms. (From DeVita et al., Cancer: Principles and Practice of Oncology, 5th ed, p2052; Adams et al., Principles of Neurology, 6th ed, p655)[accessedResource: MSH:D009837][accessDate: 2009-11-30]
GeneRIF:15484698
GeneRIF:12850541
DOID:3181
Well Differentiated Oligodendroglial Tumor[accessedResource: NCIt:C3288][accessDate: 2009-11-30]
WHO Grade II Oligodendroglial Neoplasm[accessedResource: NCIt:C3288][accessDate: 2009-11-30]
oligodendroglioma
GeneRIF:12908752
GeneRIF:12635659
GeneRIF:15950764
GeneRIF:16103065
James Malone
WHO Grade II Oligodendroglial Tumor[accessedResource: NCIt:C3288][accessDate: 2009-11-30]
Oligodendroglioma (morphologic abnormality)[accessedResource: DOID:3181][accessDate: 2009-11-30]
GeneRIF:15993274
A well-differentiated (WHO grade II), diffusely infiltrating neuroglial tumor of adults, typically located in the cerebral hemispheres. It is composed predominantly of cells which morphologically resemble oligodendroglia. The neoplastic cells have rounded homogeneous nuclei and, on paraffin sections, a swollen, clear cytoplasm ('honeycomb' appearance). It generally recurs locally, with median post-operative survival times ranging from 3 to 5 years for patients with all histological grades. (Adapted from WHO.)
[Source: NCI Thesaurus C3288]
NIFSTD:birnlex_12627
NCIt:C3288
MSH:D009837
SNOMEDCT:189920006
SNOMEDCT:73348003
Well Differentiated Oligodendroglioma[accessedResource: NCIt:C3288][accessDate: 2009-11-30]
Tomasz Adamusiak
Oligodendroglioma NOS (morphologic abnormality)[accessedResource: DOID:3181][accessDate: 2009-11-30]
A well-differentiated (WHO grade II), diffusely infiltrating neuroglial tumor, typically located in the cerebral hemispheres. It is composed predominantly of cells which morphologically resemble oligodendroglia. The neoplastic cells have rounded homogeneous nuclei and, on paraffin sections, a swollen, clear cytoplasm (&apos;honeycomb&apos; appearance). (Adapted from WHO.)[accessedResource: NCIt:C3288][accessDate: 2009-11-30]
BioportalImporter v.1.2
MCC:0000500
mIMCD3
James Malone
Ele Holloway
mIMCD-3
Intraductal and Lobular Carcinoma[accessedResource: NCIt:C7690][accessDate: 2009-11-30]
Ductal Carcinoma in situ and Infiltrating Lobular Carcinoma[accessedResource: NCIt:C6939][accessDate: 2009-11-30]
NCIt:C7690
Duplicate with invasive ductal and lobular carcinoma (EFO_0000552)
BioportalImporter v.1.2
SNOMEDCT:35232005
Invasive Ductal and Lobular Carcinoma In Situ[accessedResource: NCIt:C7689][accessDate: 2009-11-30]
Infiltrating duct and lobular carcinoma[accessedResource: DOID:6582][accessDate: 2009-11-30]
Ductal Breast Carcinoma In Situ and Invasive Lobular Carcinoma[accessedResource: NCIt:C6939][accessDate: 2009-11-30]
DCIS and ILC[accessedResource: NCIt:C6939][accessDate: 2009-11-30]
true
obsolete_mixed lobular and ductal breast carcinoma
1.5
Mixed Ductal and Lobular Breast Carcinoma[accessedResource: NCIt:C5160][accessDate: 2009-11-30]
DCIS and Infiltrating Lobular Carcinoma[accessedResource: NCIt:C6939][accessDate: 2009-11-30]
Non-Infiltrating Ductal Carcinoma and ILC[accessedResource: NCIt:C6939][accessDate: 2009-11-30]
LCIS and Infiltrating Ductal Carcinoma[accessedResource: NCIt:C7689][accessDate: 2009-11-30]
Non-Infiltrating Ductal Carcinoma and Infiltrating Lobular Carcinoma[accessedResource: NCIt:C6939][accessDate: 2009-11-30]
NCIt:C7689
DOID:6582
NCIt:C6939
Ductal and Lobular Carcinoma[accessedResource: NCIt:C5160][accessDate: 2009-11-30]
NCIt:C5160
James Malone
Lobular Carcinoma in situ and Invasive Ductal Carcinoma[accessedResource: NCIt:C7689][accessDate: 2009-11-30]
Mixed Lobular and Ductal Carcinoma[accessedResource: NCIt:C5160][accessDate: 2009-11-30]
Mixed Ductal and Lobular Carcinoma of the Breast[accessedResource: NCIt:C5160][accessDate: 2009-11-30]
Infiltrating Ductal and Lobular Carcinoma in situ[accessedResource: NCIt:C7689][accessDate: 2009-11-30]
Mixed Lobular and Ductal Carcinoma of Breast[accessedResource: NCIt:C5160][accessDate: 2009-11-30]
NCIH1993
James Malone
Ele Holloway
MFO:0002260
NIFSTD:birnlex_1509
prosencephalon[accessedResource: MAT:0000105][accessDate: 2009-11-30]
TAO:0000109
James Malone
XAO:0000011
EMAPA:16895
ZFA:0000109
MA:0000170
Tomasz Adamusiak
forebrain
SAEL:43
The anterior of the three primary divisions of the developing vertebrate brain or the corresponding part of the adult brain that includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and that especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions.[accessedResource: BTO:0000478][accessDate: 2009-11-30]
FMAID:61992
Organ component of neuraxis that has as its parts the telencephalon, diencephalon, lateral ventricles and third ventricle. Examples: There is only one forebrain.[accessedResource: FMAID:61992][accessDate: 2009-11-30]
BioportalImporter v.1.2
EHDAA:3470
MAT:0000105
BTO:0000478
CHEBI:3764
clotrimazole
1-[(2-chlorophenyl)(diphenyl)methyl]-1H-imidazole[accessedResource: CHEBI:3764][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
An imidazole that has formula C22H17ClN2.[accessedResource: CHEBI:3764][accessDate: 2009-11-30]
MAT:0000487
Dorsal is a geometric modifier describing parts of an organism relating to or situated near or on the back. For example, dorsal fin.
dorsal
James Malone
dorsal fin
PO:0009088
MAT:0000228
BTO:0001227
The outer layer of a seed that is developed from the integuments of the ovule; the testa.[accessedResource: BTO:0001227][accessDate: 2009-11-30]
James Malone
seed coat
BioportalImporter v.1.2
Racial Group[accessedResource: NCIt:C17049][accessDate: 2009-11-30]
race
An arbitrary classification of a taxonomic group that is a division of a species. It usually arises as a consequence of geographical isolation within a species and is characterized by shared heredity, physical attributes and behavior, and in the case of humans, by common history, nationality, or geographic distribution.[accessedResource: NCIt:C17049][accessDate: 2009-11-30]
A race is a popluation categorized on the basis of various sets of heritable characteristics.
James Malone
BioportalImporter v.1.2
NCIt:C17049
HCC1937
James Malone
CCFSTTG1
James Malone
Ele Holloway
A developmental stage of the Plasmodium life cycle found within the erythrocyte, called such because of the shape observed.[accessedResource: IDOMAL:0000321][accessDate: 2009-11-30]
IDOMAL:0000321
ring stage trophozoite
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
BioportalImporter v.1.2
glucose
CHEBI:17234
gluco-hexose[accessedResource: CHEBI:17234][accessDate: 2009-11-30]
A172
James Malone
Ele Holloway
pathogenicity design
Tomasz Adamusiak
MO_807
GeneRIF:15994556
GeneRIF:12719589
ICD9:176
SNOMEDCT:109385007
GeneRIF:15280476
ICD9:176.8
GeneRIF:12915579
GeneRIF:15194757
A malignant neoplasm characterized by a vascular proliferation which usually contains blunt endothelial cells. Erythrocyte extravasation and hemosiderin deposition are frequently present. The most frequent site of involvement is the skin; however it may also occur internally. It generally develops in people with compromised immune systems including those with acquired immune deficiency syndrome (AIDS).[accessedResource: NCIt:C9087][accessDate: 2009-11-30]
GeneRIF:12388718
GeneRIF:12592400
GeneRIF:14627715
GeneRIF:12176919
Kaposi's sarcoma
GeneRIF:15765147
James Malone
NCIt:C9087
ICD9:176.9
GeneRIF:12915577
SNOMEDCT:190112000
GeneRIF:12531804
GeneRIF:15471957
GeneRIF:15220403
Kaposi Sarcoma[accessedResource: NCIt:C9087][accessDate: 2009-11-30]
SNOMEDCT:49937004
GeneRIF:15246275
GeneRIF:12513914
GeneRIF:12388720
GeneRIF:12875994
GeneRIF:15331727
GeneRIF:12750160
Kaposi - Kaposi's Sarcoma[accessedResource: NCIt:C9087][accessDate: 2009-11-30]
DOID:8632
BioportalImporter v.1.2
KS[accessedResource: NCIt:C9087][accessDate: 2009-11-30]
GeneRIF:15964376
Multiple Hemorrhagic Sarcoma[accessedResource: NCIt:C9087][accessDate: 2009-11-30]
James Malone
Ele Holloway
Colo357
COLO357
unspecified peripheral T-cell lymphoma
James Malone
James Malone
GM12057
MO_837
UO:0000015
James Malone
A centimeter is a length unit which is equal to one hundredth of a meter or 10^-2 m.
Jie Zheng
cm[accessedResource: UO:0000015][accessDate: 2009-11-30]
A length unit which is equal to one hundredth of a meter or 10^[-2] m.[accessedResource: UO:0000015][accessDate: 2009-11-30]
centimetre
Tomasz Adamusiak
centimeter
BioportalImporter v.1.2
James Malone
BioportalImporter v.1.2
ochratoxin A
N-{[(3R)-5-chloro-8-hydroxy-3-methyl-1-oxo-3,4-dihydro-1H-2-benzopyran-7-yl]carbonyl}-L-phenylalanine[accessedResource: CHEBI:7719][accessDate: 2009-11-30]
A phenylalanine derivative that has formula C20H18ClNO6.[accessedResource: CHEBI:7719][accessDate: 2009-11-30]
CHEBI:7719
DMS79
James Malone
Ele Holloway
erythrocytic schizont
IDOMAL:0000306
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
A sporozoan cell that reproduces by schizogony, producing a varied number of daughter trophozoites or merozoites.[accessedResource: IDOMAL:0000306][accessDate: 2009-11-30]
http://www.informatics.jax.org/mgihome/nomen/strain_129.shtml
129/Sv
129/Sv is a substrain of the mouse strain 129 as described in Jackson Laboratory http://www.informatics.jax.org/mgihome/nomen/strain_129.shtml
James Malone
Tomasz Adamusiak
Jie Zheng
CL:0000549
basophilic erythroblast
James Malone
Ele Holloway
MC116
embryonic central brain surface glia
James Malone
FBbt:00005664
NCIH1975
James Malone
Ele Holloway
Intestinal Gastric Adenocarcinoma[accessedResource: NCIt:C9157][accessDate: 2009-11-30]
BioportalImporter v.1.2
Intestinal Adenocarcinoma of Stomach[accessedResource: NCIt:C9157][accessDate: 2009-11-30]
Intestinal Stomach Adenocarcinoma[accessedResource: NCIt:C9157][accessDate: 2009-11-30]
Intestinal Adenocarcinoma of the Stomach[accessedResource: DOID:8026][accessDate: 2009-11-30]
gastric intestinal type adenocarcinoma
An adenocarcinoma of the stomach arising on a background of intestinal metaplasia. Microscopically, it is characterized by a glandular pattern and it closely resembles a colonic adenocarcinoma. Grossly, it tends to be nodular, polypoid or ulcerated.
[Source: NCI Thesaurus C9157]
NCIt:C9157
James Malone
DOID:8026
Distal is a geometric modifier describing the point furthest from the point of attachment to the body or to some point of origin. For example, distal end of femur.
distal end of femur
MAT:0000486
James Malone
distal
cotyledon
PO:0020030
BTO:0000300
A seed leaf; the first leaf formed in a seed.[accessedResource: BTO:0000300][accessDate: 2009-11-30]
James Malone
MAT:0000359
BioportalImporter v.1.2
The central nervous system is that part of the nervous system that consists of the brain and spinal cord. The central nervous system (CNS) is one of the two major divisions of the nervous system. The other is the peripheral nervous system (PNS) which is outside the brain and spinal cord.[accessedResource: BTO:0000227][accessDate: 2009-11-30]
CNS[accessedResource: FMAID:55675][accessDate: 2009-11-30]
Organ with organ cavity which consists of gray matter and white matter. Examples: There is only one neuraxis.[accessedResource: FMAID:55675][accessDate: 2009-11-30]
TAO:0000012
ZFA:0000012
EV:0100163
neuraxis[accessedResource: MAT:0000457][accessDate: 2009-11-30]
BTO:0000227
EMAPA:16470
EHDAA:828
FMAID:55675
BioportalImporter v.1.2
Cerebrospinal axis[accessedResource: FMAID:55675][accessDate: 2009-11-30]
James Malone
central nervous system
MA:0000167
NIFSTD:birnlex_1099
MAT:0000457
Tomasz Adamusiak
A propanoate ester that has formula C12H15ClO3.[accessedResource: CHEBI:3750][accessDate: 2009-11-30]
ethyl 2-(4-chlorophenoxy)-2-methylpropanoate[accessedResource: CHEBI:3750][accessDate: 2009-11-30]
BioportalImporter v.1.2
clofibrate
CHEBI:3750
James Malone
mitochondrial NADH:ubiquinone reductase inhibitor
CHEBI:38498
CHEBI:38498
https://www.cbil.upenn.edu/RADQuerier/php/sampleInfo.php?assay_id=8649&&study_id=2424
B10.NOD_H2g7
Tomasz Adamusiak
Jie Zheng
C57Bl/10 derived non-diabetic mouse strain expressing H2g7.
HCC1954
James Malone
Tomasz Adamusiak
James Malone
Wikipedia definition, modified by editor.
twin study
A twin study is a study design in behavior genetics which aid the study of individual differences between genetically identical twins by highlighting the role of environmental and genetic causes on behavior.
CAL62
James Malone
Ele Holloway
glucosamine
2-amino-2-deoxyglucose[accessedResource: CHEBI:5417][accessDate: 2009-11-30]
CHEBI:5417
BioportalImporter v.1.2
Tomasz Adamusiak
MO_726
injury design
James Malone
Ele Holloway
F13
James Malone
Ele Holloway
A101D
DOID:5521
Squamous cell carcinoma, keratinizing (morphologic abnormality)[accessedResource: DOID:5521][accessDate: 2009-11-30]
NCIt:C4105
Keratinizing epidermoid carcinoma[accessedResource: DOID:5521][accessDate: 2009-11-30]
keratinizing squamous cell carcinoma
SNOMEDCT:18048008
James Malone
BioportalImporter v.1.2
Keratinising squamous cell carcinoma[accessedResource: DOID:5521][accessDate: 2009-11-30]
Squamous cell carcinomas with morphologically prominent production of keratin.
[Source: NCI Thesaurus C4105]
GM12056
James Malone
femtometer
A femtometer is a length unit which is equal to 1m x 10^-15.
fm
femtometre
James Malone
PERSON: James Malone
CHEBI:28285
oligomycin A
James Malone
Ele Holloway
DOHH2
James Malone
Ele Holloway
LS174T
Tomasz Adamusiak
James Malone
129S6 is a substrain of the mouse strain 129 as described in Jackson Laboratory http://www.informatics.jax.org/mgihome/nomen/strain_129.shtml
129S6
http://www.informatics.jax.org/mgihome/nomen/strain_129.shtml
NIFSTD:birnlex_174
129S6/SvEvTac
embryonic central brain pars intercerebralis
James Malone
FBbt:00005667
nephroblastoma
Tomasz Adamusiak
DOID:2154
large intestine
TGMA:0001020
hindgut[accessedResource: MAT:0000046][accessDate: 2009-11-30]
MAT:0000046
EMAPA:19252
XAO:0000131
BTO:0000706
ZFA:0000706
SAEL:58
Organ with organ cavity which is continuous proximally with the small intestine and distally with the anal canal. Examples: There is only large intestine.[accessedResource: FMAID:7201][accessDate: 2009-11-30]
MA:0000333
EV:0100077
James Malone
BioportalImporter v.1.2
Large bowel[accessedResource: FMAID:7201][accessDate: 2009-11-30]
The hindgut of adult mosquito consists of pyloric chamber, anterior intestine, rectum, anal canal and anus.[accessedResource: TGMA:0001020][accessDate: 2009-11-30]
The more terminal division of the vertebrate intestine that is wider and shorter than the small intestine, typically divided into cecum, colon, and rectum, and concerned especially with the resorption of water and the formation of feces.[accessedResource: BTO:0000706][accessDate: 2009-11-30]
FMAID:7201
NCIH1930
James Malone
Ele Holloway
MSH:D046152
GIST[accessedResource: DOID:9253][accessDate: 2009-11-30]
DOID:9253
gastrointestinal stromal tumor
Stromal tumor of Gastrointestinal tract[accessedResource: DOID:9253][accessDate: 2009-11-30]
Gastrointestinal Stromal tumors[accessedResource: DOID:9253][accessDate: 2009-11-30]
All tumors in the GASTROINTESTINAL TRACT arising from mesenchymal cells (MESODERM) except those of smooth muscle cells (LEIOMYOMA) or Schwann cells (SCHWANNOMA).[accessedResource: MSH:D046152][accessDate: 2009-11-30]
BioportalImporter v.1.2
GANT[accessedResource: DOID:9253][accessDate: 2009-11-30]
James Malone
James Malone
HCC1500
James Malone
Ele Holloway
CAL54
CHEBI:38462
CHEBI:38462
James Malone
acetylcholinesterase inhibitor
basal ganglia
Tomasz Adamusiak
James Malone
basal
NIFSTD:sao-282380853
MAT:0000485
Basal is a geometric modifier describing areas associated with the base of an organism or organism part. For example, basal ganglia.
Tomasz Adamusiak
Jie Zheng
MO_771
gene knock out
true
obsolete_pretreatment
true
A tripeptide compound consisting of glutamic acid attached via its side chain to the N-terminus of cysteinylglycine.[accessedResource: CHEBI:16856][accessDate: 2009-11-30]
NIFSTD:nlx_mol_20090201
CHEBI:16856
Tomasz Adamusiak
BioportalImporter v.1.2
L-gamma-glutamyl-L-cysteinylglycine[accessedResource: CHEBI:16856][accessDate: 2009-11-30]
glutathione
KIF5
Kif5
James Malone
Ele Holloway
A375
James Malone
Ele Holloway
SKNFI
James Malone
Ele Holloway
GeneRIF:15867174
GeneRIF:15601946
GeneRIF:15001561
GeneRIF:12849738
GeneRIF:16155108
GeneRIF:15078802
GeneRIF:15147523
GeneRIF:16194580
GeneRIF:15059967
GeneRIF:12232802
GeneRIF:14615282
GeneRIF:15734859
GeneRIF:12975460
GeneRIF:12736150
GeneRIF:15512786
GeneRIF:12651615
GeneRIF:12883833
GeneRIF:11801667
GeneRIF:16052682
GeneRIF:12904478
GeneRIF:14747752
GeneRIF:12947324
GeneRIF:15306252
GeneRIF:14583338
GeneRIF:15050129
GeneRIF:12538716
GeneRIF:12969257
GeneRIF:12130736
GeneRIF:12368657
GeneRIF:15502938
GeneRIF:14965033
GeneRIF:15489954
GeneRIF:12598725
GeneRIF:15262323
GeneRIF:15030400
GeneRIF:16040592
GeneRIF:11919511
GeneRIF:15241185
GeneRIF:12454802
GeneRIF:15309411
GeneRIF:12963035
GeneRIF:12453540
GeneRIF:14578604
GeneRIF:12718435
GeneRIF:15612529
GeneRIF:12699784
GeneRIF:11822892
GeneRIF:12707035
GeneRIF:15239105
GeneRIF:12716944
GeneRIF:16284105
GeneRIF:12598732
GeneRIF:14500739
GeneRIF:12535945
GeneRIF:14568904
GeneRIF:15316398
GeneRIF:12468103
GeneRIF:12709584
GeneRIF:12384456
A hypoperfusion of the BLOOD through an organ or tissue caused by a PATHOLOGIC CONSTRICTION or obstruction of its BLOOD VESSELS, or an absence of BLOOD CIRCULATION.[accessedResource: MSH:D007511][accessDate: 2009-11-30]
GeneRIF:12623065
GeneRIF:12076861
GeneRIF:15017017
GeneRIF:12172377
GeneRIF:15851594
GeneRIF:12165407
GeneRIF:15729291
GeneRIF:12144846
GeneRIF:12577622
GeneRIF:15961228
GeneRIF:15575898
GeneRIF:12871572
James Malone
GeneRIF:15345651
GeneRIF:12714332
GeneRIF:15791006
GeneRIF:12145195
GeneRIF:12031986
GeneRIF:15653094
GeneRIF:11877468
GeneRIF:15358666
GeneRIF:15723986
GeneRIF:15362036
GeneRIF:12812761
GeneRIF:15350969
GeneRIF:16077081
GeneRIF:15380477
GeneRIF:12923494
GeneRIF:14507649
GeneRIF:15856211
GeneRIF:16055264
GeneRIF:15013953
GeneRIF:11837786
GeneRIF:15339931
GeneRIF:12813366
DOID:326
GeneRIF:14670843
GeneRIF:15081307
GeneRIF:14741413
GeneRIF:14753415
GeneRIF:12529269
GeneRIF:15817274
GeneRIF:14983226
GeneRIF:15207275
GeneRIF:15854743
GeneRIF:12210757
GeneRIF:12414116
GeneRIF:11854323
GeneRIF:15262832
GeneRIF:15117851
GeneRIF:12950452
GeneRIF:12805025
GeneRIF:12730952
GeneRIF:12672549
GeneRIF:15613744
GeneRIF:15994441
GeneRIF:12540780
GeneRIF:12753927
GeneRIF:15742404
GeneRIF:15284219
GeneRIF:15543936
GeneRIF:16115445
GeneRIF:12782295
GeneRIF:16095866
GeneRIF:12437588
GeneRIF:15829914
GeneRIF:15181368
GeneRIF:12489796
GeneRIF:14643014
Ischemia[accessedResource: DOID:326][accessDate: 2009-11-30]
Ischemia (disorder)[accessedResource: DOID:326][accessDate: 2009-11-30]
GeneRIF:15142843
GeneRIF:12415119
GeneRIF:12078512
GeneRIF:15025939
GeneRIF:15309413
GeneRIF:16166266
GeneRIF:12595498
GeneRIF:16100246
GeneRIF:12746188
GeneRIF:15561908
GeneRIF:11756680
GeneRIF:15541008
GeneRIF:12600263
GeneRIF:12208351
GeneRIF:15474357
GeneRIF:15637314
GeneRIF:15611365
GeneRIF:12031847
GeneRIF:15837573
GeneRIF:11934832
GeneRIF:14969349
GeneRIF:11945023
GeneRIF:15518712
GeneRIF:15778274
GeneRIF:16127466
GeneRIF:14730711
SNOMEDCT:52674009
GeneRIF:12580450
GeneRIF:15173034
GeneRIF:12593860
GeneRIF:14757696
GeneRIF:14983993
ischaemia
GeneRIF:14502288
GeneRIF:12126535
GeneRIF:12207967
GeneRIF:12201360
GeneRIF:12645009
GeneRIF:15105298
GeneRIF:15953587
GeneRIF:12528815
GeneRIF:12088756
GeneRIF:15206826
GeneRIF:15804717
GeneRIF:15901600
GeneRIF:14871559
GeneRIF:15548426
GeneRIF:15820254
GeneRIF:12860919
GeneRIF:15818741
GeneRIF:14522822
GeneRIF:15845077
GeneRIF:15579510
GeneRIF:12897086
GeneRIF:12352321
GeneRIF:15687494
GeneRIF:15358037
GeneRIF:12657670
GeneRIF:15790561
GeneRIF:15752542
GeneRIF:14732352
BioportalImporter v.1.2
GeneRIF:15316036
GeneRIF:12099359
GeneRIF:12766162
MSH:D007511
GeneRIF:15090052
GeneRIF:12490603
GeneRIF:12887688
GeneRIF:15223375
GeneRIF:14599979
Bladder (MMHCC)[accessedResource: NCIt:C22729][accessDate: 2009-11-30]
obsolete_bladder MMHCC
Obsolete: No longer required in EFO
true
James Malone
BioportalImporter v.1.2
NCIt:C22729
A heart, a human, a fly, a microarray.
material entity
A material entity is an entity that exists in full during the length of time of its existence, persists through this time while maintaining its identity and has no temporal parts. For example a heart, a human, a fly, a microarray.
James Malone
BFO:continuant.
sample factor
CHEBI:25675
oligomycins
GeneRIF:16215315
Carcinoma of the Urinary Bladder[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
GeneRIF:12820373
GeneRIF:11749692
Bladder Cancer[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
GeneRIF:15032076
Cancer of the Urinary Bladder[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
Carcinoma of urinary bladder[accessedResource: DOID:4007][accessDate: 2009-11-30]
Bladder carcinoma is a carcinoma arising from the bladder epithelium. Approximately 90% of the bladder carcinomas are transitional cell carcinomas. The remainder are squamous cell carcinomas, adenocarcinomas and small cell neuroendocrine carcinomas.
[Source: NCI Thesaurus C4912]
NCIt:C4912
GeneRIF:15734831
Cancer of the Bladder[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
SNOMEDCT:255108000
Urinary Bladder Cancer[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
Cancer of Bladder[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
Carcinoma of the Bladder[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
bladder carcinoma
BioportalImporter v.1.2
A carcinoma arising from the bladder epithelium. Approximately 90% of the bladder carcinomas are transitional cell carcinomas. The remainder are squamous cell carcinomas, adenocarcinomas and small cell neuroendocrine carcinomas.[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
James Malone
GeneRIF:15942628
GeneRIF:15386310
GeneRIF:12594814
GeneRIF:12488298
Urinary Bladder Carcinoma[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
Cancer of Urinary Bladder[accessedResource: NCIt:C4912][accessDate: 2009-11-30]
GeneRIF:16061860
GeneRIF:15516981
GeneRIF:12492368
GeneRIF:15361851
GeneRIF:14654522
Carcinoma of bladder (disorder)[accessedResource: DOID:4007][accessDate: 2009-11-30]
GeneRIF:12225859
GeneRIF:15599595
GeneRIF:15140401
Carcinoma of bladder[accessedResource: DOID:4007][accessDate: 2009-11-30]
DOID:4007
GM12044
James Malone
DMS273
James Malone
Ele Holloway
serous cystadenofibroma
DOID:7320
ovarian serous cystadenofibroma
James Malone
Ele Holloway
EV:0100072
MA:0000337
FMAID:14544
The part of the intestine that lies between the stomach and colon, consists of duodenum, jejunum, and ileum, secretes digestive enzymes, and is the chief site of the absorption of digested nutrients. The proximal portion of the intestine.[accessedResource: BTO:0000651][accessDate: 2009-11-30]
SAEL:96
BioportalImporter v.1.2
BTO:0000651
The anterior intestine is a rather narrow looped tube of the adult hindgut.[accessedResource: TGMA:0001024][accessDate: 2009-11-30]
anterior intestine[accessedResource: MAT:0000047][accessDate: 2009-11-30]
ZFA:0001323
James Malone
XAO:0000130
TGMA:0001024
MAT:0000047
small intestine
embryonic central brain neuron
James Malone
FBbt:00005665
LS1034
James Malone
Ele Holloway
James Malone
HCC1428
129 mouse strain
129 is a mouse strain as described in Jackson Laboratory http://www.informatics.jax.org/mgihome/nomen/strain_129.shtml
James Malone
http://www.informatics.jax.org/mgihome/nomen/strain_129.shtml
Simpson E. M., Linder C. C., Sargent E. E., Davisson M. T., Mobraaten L. E., and Sharp J. J. (1997) Genetic variation among 129 substrains and its importance for targeted mutagenesis in mice. Nature Genet. 16, 19-27.
James Malone
Ele Holloway
CA46
James Malone
HCC1569
James Malone
A triploid nutritive tissue resulting from the fusion of a haploid sperm nucleus with the two haploid polar nuclei in the ovule of angiosperms.[accessedResource: BTO:0000390][accessDate: 2009-11-30]
PO:0009089
MAT:0000227
BioportalImporter v.1.2
endosperm
BTO:0000390
The number of cell passages if the organism or organism part that is cultured is unicellular or a cell culture; otherwise the number of generations.
Quality? Is this intrinsic to the organism?
Tomasz Adamusiak
Jie Zheng
James Malone
generation
MO_43
CHEBI:38215
calcium channel blocker
BioportalImporter v.1.2
One of a class of drugs that acts by selective inhibition of calcium influx through cell membranes or on the release and binding of calcium in intracellular pools.[accessedResource: CHEBI:38215][accessDate: 2009-11-30]
CHEBI:38215
James Malone
apical
NIFSTD:sao1703115805
MAT:0000484
lung apical
Apical is a geometric modifier describing the tip of a pyramidal or rounded structure. For example, lung apical.
Tomasz Adamusiak
James Malone
SKO007
James Malone
Ele Holloway
James Malone
Ele Holloway
A204
A subacute or chronic inflammatory disease of muscle and skin, marked by proximal muscle weakness and a characteristic skin rash. The illness occurs with approximately equal frequency in children and adults. The skin lesions usually take the form of a purplish rash (or less often an exfoliative dermatitis) involving the nose, cheeks, forehead, upper trunk, and arms. The disease is associated with a complement mediated intramuscular microangiopathy, leading to loss of capillaries, muscle ischemia, muscle-fiber necrosis, and perifascicular atrophy. The childhood form of this disease tends to evolve into a systemic vasculitis. Dermatomyositis may occur in association with malignant neoplasms. (From Adams et al., Principles of Neurology, 6th ed, pp1405-6)[accessedResource: MSH:D003882][accessDate: 2009-11-30]
NCIt:C27576
GeneRIF:15338511
MSH:D003882
DOID:14203
James Malone
juvenile dermatomyositis
BioportalImporter v.1.2
SNOMEDCT:1212005
Childhood type dermatomyositis (disorder)[accessedResource: DOID:14203][accessDate: 2009-11-30]
childhood type dermatomyositis[accessedResource: DOID:14203][accessDate: 2009-11-30]
Childhood Dermatomyositis[accessedResource: NCIt:C27576][accessDate: 2009-11-30]
Panc1
PANC-1
James Malone
Ele Holloway
Derived from BFO:processual entity
process
A process is an entity that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity during the time it occurs.
James Malone
CHEBI:28300
An alpha-amino acid that has formula C5H10N2O3.[accessedResource: CHEBI:28300][accessDate: 2009-11-30]
BioportalImporter v.1.2
glutamine
SAEL:115
Organ with organ cavity which is continuous proximally with the right and left ureters and distally with the urethra. Examples: There is only one urinary bladder.[accessedResource: FMAID:15900][accessDate: 2009-11-30]
A membranous sac in animals that serves as the receptacle of a liquid or contains gas.[accessedResource: BTO:0000123][accessDate: 2009-11-30]
BioportalImporter v.1.2
MA:0000380
bladder
James Malone
MAT:0000122
Urinary Bladder[accessedResource: NCIt:C12414][accessDate: 2009-11-30]
EV:0100098
The distensible sac-like organ that functions as a reservoir of urine, collecting from the kidneys and eliminating via the urethra.[accessedResource: NCIt:C12414][accessDate: 2009-11-30]
BTO:0000123
Urinary System, Bladder[accessedResource: NCIt:C12414][accessDate: 2009-11-30]
XAO:0000154
NCIt:C12414
FMAID:15900
EHDAA:9328
AAO:0000623
EMAPA:18321
CL:0000100
A neuron with a motor function; an efferent neuron conveying motor impulses.[accessedResource: BTO:0000312][accessDate: 2009-11-30]
James Malone
1.8
BioportalImporter v.1.2
motor neuron[accessedResource: CL:0000100][accessDate: 2009-11-30]
obsolete_motoneuron
BTO:0000312
duplicate deprecated in favour of motor neurone
lateral motoneuron
medial motoneuron
An efferent neuron that passes from the central nervous system or a ganglion toward or to a muscle and conducts an impulse that causes movement.[accessedResource: CL:0000100][accessDate: 2009-11-30]
true
DMS53
James Malone
Ele Holloway
CL:0000542
obsolete_T lymphocyte
T lymphoma cell
James Malone
1.7
Duplicate: use EFO_0000208
true
A cell of the B cell, T cell, or natural killer cell lineage.[accessedResource: CL:0000542][accessDate: 2009-11-30]
BioportalImporter v.1.2
GM12043
James Malone
James Malone
temp holding class to be placed as hierarchy is restructured
temporary place holder class, no longer needed
obsolete_temp bin organism part
1.8
true
simple cystadenoma
James Malone
Ele Holloway
BioportalImporter v.1.2
A biphenylyltetrazole that has formula C24H26N6O3.[accessedResource: CHEBI:48416][accessDate: 2009-11-30]
olmesartan
4-(1-hydroxy-1-methylethyl)-2-propyl-1-{[2'-(1H-tetrazol-5-yl)[1,1'-biphenyl]-4-yl]methyl}-1H-imidazole-5-carboxylic acid[accessedResource: CHEBI:48416][accessDate: 2009-11-30]
CHEBI:48416
L428
James Malone
Ele Holloway
The development of the mushroom body proceeds as follows: Axonogenesis of embryonic Kenyon cells starts late in embryonic stage 14. The axons from these cells extend towards the lateral proto-cerebral tract (LTP). During stage 16, a second set of kenyon cell fibres form a second tract, closely apposed to the first. By late stage 16, both tracts extend anteriorly beyond the LTP to form the distal part of the peduncle. These tracts make a sharp medial turn close to the boundary with the deutocerebrum to form the medial lobe. By late stage 17 the dorsal lobe has emerged as a collateral outgrowth from the point where these tracts bend. Finally, the calyx forms near to the end of embryogenesis.[accessedResource: FBbt:00005508][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
FBbt:00005508
embryonic central brain mushroom body
mushroom body primordium[accessedResource: FBbt:00005508][accessDate: 2009-11-30]
CS57660 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158684&type=germplasm
James Malone
CS57660
http://www.arabidopsis.org/servlets/TairObject?id=1005158684&type=germplasm
OBI_0200169
James Malone
BioportalImporter v.1.2
A normalization data transformation is a data transformation that has objective normalization.[accessedResource: OBI_0200169][accessDate: 2009-11-30]
normalization data transformation
BTO:0000093
James Malone
BioportalImporter v.1.2
MCF-7
MCF7
MCC:0000307
Human breast adenocarcinoma, established from the pleural effusion of a 69-year-old caucasian woman with metastatic mammary carcinoma (after radio- and hormone therapy) in 1970; cells were described of being positive for cytoplasmic estrogen receptors and having the capability to form domes.[accessedResource: BTO:0000093][accessDate: 2009-11-30]
obsolete_brain tumor glioblastoma
true
duplication with glioblastoma (EFO_0000519)
1.5
James Malone
Tomasz Adamusiak
Jie Zheng
James Malone
MO_738
timepoint
NCIt:C54187
Floor of the Mouth[accessedResource: NCIt:C54187][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
floor of mouth
Discrete abnormal tissue masses that protrude into the lumen of the DIGESTIVE TRACT or the RESPIRATORY TRACT. Polyps can be spheroidal, hemispheroidal, or irregular mound-shaped structures attached to the MUCOUS MEMBRANE of the lumen wall either by a stalk, pedunculus, or by a broad base.[accessedResource: MSH:D011127][accessDate: 2009-11-30]
James Malone
GeneRIF:12916705
GeneRIF:12351556
DOID:3475
GeneRIF:15017003
MSH:D011127
GeneRIF:11932925
NCIt:C3340
GeneRIF:12218179
GeneRIF:12970739
A usually exophytic mass attached to the underlying tissue by a broad base or a thin stalk. Polyps can be neoplastic or non-neoplastic. Neoplastic polyps usually represent proliferations of the epithelium, and are commonly seen in the gastrointestinal tract. Polyps of the gastrointestinal tract are often called adenomas, are associated with dysplasia, and may eventually transform into carcinomas. Non-neoplastic polyps may be inflammatory, degenerative, or the result of malformations. -- 2004
[Source: NCI Thesaurus C3340]
GeneRIF:12151354
A usually exophytic mass attached to the underlying tissue by a broad base or a thin stalk. Polyps can be neoplastic or non-neoplastic. Neoplastic polyps usually represent proliferations of the epithelium, and are commonly seen in the gastrointestinal tract. Polyps of the gastrointestinal tract are often called adenomas, are associated with dysplasia, and may eventually transform into carcinomas. Non-neoplastic polyps may be inflammatory, degenerative, or the result of malformations.[accessedResource: NCIt:C3340][accessDate: 2009-11-30]
GeneRIF:15489648
BioportalImporter v.1.2
Polyp (morphologic abnormality)[accessedResource: DOID:3475][accessDate: 2009-11-30]
Polyps[accessedResource: DOID:3475][accessDate: 2009-11-30]
GeneRIF:12807720
GeneRIF:12855642
polyp
GeneRIF:12841871
EVM:2990005
XAO:1000003
WBIs:0000005
blastula embryo[accessedResource: MAT:0000396][accessDate: 2009-11-30]
BioportalImporter v.1.2
blastula stage
FBdv:00005304
blastoderm stage[accessedResource: MAT:0000396][accessDate: 2009-11-30]
James Malone
oxidane[accessedResource: CHEBI:15377][accessDate: 2009-11-30]
MO_380
BioportalImporter v.1.2
An inorganic hydroxy compound that has formula H2O.[accessedResource: CHEBI:15377][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
water
James Malone
CHEBI:15377
blastula oblong
ZFS:0000013
James Malone
GLI56
James Malone
NIFSTD:sao2050279787
4-(2-aminoethyl)benzene-1,2-diol[accessedResource: CHEBI:18243][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
dopamine
BioportalImporter v.1.2
CHEBI:18243
A catecholamine that has formula C8H11NO2.[accessedResource: CHEBI:18243][accessDate: 2009-11-30]
Non-Hodgkin's Lymphoma B-Cell[accessedResource: C3457][accessDate: 2009-11-30]
peripheral B-cell neoplasm
The most common type of non-Hodgkin lymphoma. It includes the most frequently seen morphologic variants which are: diffuse large B-cell lymphoma, follicular lymphoma, small lymphocytic lymphoma and marginal zone B-cell lymphoma. -- 2003[accessedResource: C3457][accessDate: 2009-11-30]
C3457
Lymphomas Non-Hodgkin's B-Cell[accessedResource: C3457][accessDate: 2009-11-30]
B-cell lymphoma
neoplasm of mature B-cells
James Malone
BioportalImporter v.1.2
B-Cell Non-Hodgkin Lymphoma[accessedResource: C3457][accessDate: 2009-11-30]
GeneRIF:12855673
GeneRIF:15861005
GeneRIF:14575314
GeneRIF:15193812
MI[accessedResource: NCIt:C27996][accessDate: 2009-11-30]
GeneRIF:12482844
GeneRIF:14986172
GeneRIF:15140581
GeneRIF:12649084
GeneRIF:11816707
GeneRIF:14652632
GeneRIF:11861414
GeneRIF:11834491
GeneRIF:12456499
GeneRIF:14993131
GeneRIF:12958147
GeneRIF:11994975
Myocardial infarction NOS[accessedResource: DOID:5844][accessDate: 2009-11-30]
GeneRIF:15009479
GeneRIF:12081989
GeneRIF:15808838
GeneRIF:14770184
GeneRIF:12426569
GeneRIF:12697693
GeneRIF:15170085
GeneRIF:12165563
GeneRIF:15175818
GeneRIF:12535745
GeneRIF:14656915
GeneRIF:15520319
GeneRIF:15458948
GeneRIF:15297380
GeneRIF:14646971
GeneRIF:15931235
GeneRIF:15467919
GeneRIF:15665106
heart attack[accessedResource: DOID:5844][accessDate: 2009-11-30]
GeneRIF:12362496
GeneRIF:12819031
GeneRIF:14575298
GeneRIF:12818419
GeneRIF:12070000
GeneRIF:15678273
GeneRIF:11926892
GeneRIF:11903359
MSH:D009203
GeneRIF:15081319
Myocardial Infarctions[accessedResource: DOID:5844][accessDate: 2009-11-30]
GeneRIF:12746412
GeneRIF:12969888
GeneRIF:12452318
GeneRIF:16186408
GeneRIF:16102106
GeneRIF:12771003
GeneRIF:15883205
GeneRIF:14729404
Myocardial infarction (disorder)[accessedResource: DOID:5844][accessDate: 2009-11-30]
NCIt:C27996
GeneRIF:15699461
GeneRIF:12081984
GeneRIF:15298543
GeneRIF:15583729
GeneRIF:12663371
GeneRIF:14966366
GeneRIF:11858502
GeneRIF:15213208
GeneRIF:15466927
myocardial infarction
GeneRIF:15075297
GeneRIF:14631138
GeneRIF:12011770
GeneRIF:12600920
GeneRIF:15226628
GeneRIF:15376321
GeneRIF:15533863
GeneRIF:12514664
GeneRIF:15319210
GeneRIF:15129282
GeneRIF:15998711
GeneRIF:15681698
GeneRIF:15234427
GeneRIF:16159602
GeneRIF:14517168
GeneRIF:15269835
GeneRIF:15793582
GeneRIF:14530192
GeneRIF:16116695
GeneRIF:12760310
GeneRIF:12745799
GeneRIF:14717963
GeneRIF:12535806
GeneRIF:12483464
GeneRIF:12395208
GeneRIF:12855229
GeneRIF:12615902
GeneRIF:12891167
DOID:5844
NECROSIS of the MYOCARDIUM caused by an obstruction of the blood supply to the heart (CORONARY CIRCULATION).[accessedResource: MSH:D009203][accessDate: 2009-11-30]
GeneRIF:11871391
GeneRIF:15842378
GeneRIF:15616022
GeneRIF:12898814
SNOMEDCT:22298006
GeneRIF:14871556
GeneRIF:12805025
GeneRIF:15907784
GeneRIF:15201542
GeneRIF:14500723
BioportalImporter v.1.2
GeneRIF:15466009
Myocardial Infarct[accessedResource: NCIt:C27996][accessDate: 2009-11-30]
GeneRIF:15533859
GeneRIF:15292372
MI - Myocardial infarction[accessedResource: DOID:5844][accessDate: 2009-11-30]
GeneRIF:11999647
GeneRIF:12714332
Gross necrosis of the myocardium, as a result of interruption of the blood supply to the area, as in coronary thrombosis.
[Source: NCI Thesaurus C27996]
GeneRIF:15764682
GeneRIF:14556196
GeneRIF:12844196
GeneRIF:15140146
GeneRIF:14983241
GeneRIF:12860906
GeneRIF:15210453
GeneRIF:15576653
GeneRIF:15754085
GeneRIF:16087130
GeneRIF:12430844
GeneRIF:14962947
GeneRIF:15256074
GeneRIF:12200370
GeneRIF:12824724
GeneRIF:12392996
GeneRIF:15763077
GeneRIF:12514663
GeneRIF:14600184
GeneRIF:14581297
GeneRIF:14645853
GeneRIF:12469616
GeneRIF:14693682
GeneRIF:15150438
GeneRIF:11934213
GeneRIF:15539626
GeneRIF:15978110
GeneRIF:15949932
GeneRIF:12237129
GeneRIF:15520258
GeneRIF:12719858
GeneRIF:16276010
James Malone
GeneRIF:12855940
GeneRIF:11820456
GeneRIF:12853162
GeneRIF:12226742
GeneRIF:14653443
Tomasz Adamusiak
hippocampus CA2
birn_anat:birnlex_1362
MA:0000951
HP:0008200
DOID:11202
Tomasz Adamusiak
Ele Holloway
BioportalImporter v.1.2
primary hyperparathyroidism (disorder)[accessedResource: DOID:11202][accessDate: 2009-11-30]
primary hyperparathyroidism
BioportalImporter v.1.2
MERGED DEFINITION:nTARGET DEFINITION: The delicate network of branched cells and fibers that supports the tissue of the central nervous system.n--------------------nSOURCE DEFINITION: The cells of the supportive tissue of the central nervous system (neuroglia). These non-neural cells are of three kinds: astrocytes, oligodendrocytes (collectively termed macroglia) and microglia.[accessedResource: BTO:0000524][accessDate: 2009-11-30]
neuroglial cell[accessedResource: CL:0000125][accessDate: 2009-11-30]
A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons.[accessedResource: CL:0000125][accessDate: 2009-11-30]
BTO:0000524
NIFSTD:sao313023570
Tomasz Adamusiak
glial cell
mixed glial cells
James Malone
glia[accessedResource: BTO:0000524][accessDate: 2009-11-30]
CL:0000125
James Malone
SUM159PT
James Malone
CS57569 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158593&type=germplasm
CS57569
http://www.arabidopsis.org/servlets/TairObject?id=1005158593&type=germplasm
CS57663
http://www.arabidopsis.org/servlets/TairObject?id=1005158687&type=germplasm
James Malone
CS57663 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158687&type=germplasm
CHEBI:37733
CHEBI:37733
James Malone
cholinesterase inhibitor
NCIt:C12439
MA:0000168
Brain, Nervous System[accessedResource: NCIt:C12439][accessDate: 2009-11-30]
FMAID:50801
James Malone
The central nervous system is that part of the nervous system that consists of the brain and spinal cord. The central nervous system (CNS) is one of the two major divisions of the nervous system. The other is the peripheral nervous system (PNS) which is outside the brain and spinal cord.[accessedResource: BTO:0000227][accessDate: 2009-11-30]
TAO:0000008
MFO:0002240
NIFSTD:birnlex_796
BioportalImporter v.1.2
brain structure
ZFA:0000008
EV:0100164
EHDAA:2641
An organ composed of grey and white matter containing billions of neurons that is the center for intelligence and reasoning. It is protected by the bony cranium.[accessedResource: NCIt:C12439][accessDate: 2009-11-30]
BTO:0000227
Segment of neuraxis that has as its parts gray matter and white matter that surround the cerebral ventricular system; Examples: There is only one brain.[accessedResource: FMAID:50801][accessDate: 2009-11-30]
brain
WBbt:0005440
FBbt:00003624
MAT:0000098
synganglion[accessedResource: MAT:0000098][accessDate: 2009-11-30]
SAEL:12
Tomasz Adamusiak
TADS:0000188
GeneRIF:15342693
GeneRIF:12655282
Increased pressure in the eyeball due to obstruction of the outflow of aqueous humor.[accessedResource: NCIt:C26782][accessDate: 2009-11-30]
DOID:1686
GeneRIF:12687498
SNOMEDCT:23986001
GeneRIF:12073024
GeneRIF:15723004
GeneRIF:16043855
GeneRIF:14725620
GeneRIF:15579465
SNOMEDCT:193559002
GeneRIF:15823921
GeneRIF:15509533
BioportalImporter v.1.2
ICD9:365.8
James Malone
GeneRIF:15557444
GeneRIF:12676895
GeneRIF:12060848
GeneRIF:16103353
GeneRIF:15498064
GeneRIF:12789547
ICD9:365.6
NCIt:C26782
GeneRIF:11774072
GeneRIF:12811537
GeneRIF:12828935
GeneRIF:14740993
GeneRIF:11910561
ICD9:365.9
GeneRIF:15638362
SNOMEDCT:193566001
GeneRIF:15895394
GeneRIF:15326130
glaucoma
GeneRIF:12920093
SNOMEDCT:193565002
GeneRIF:15304601
ICD9:365
GeneRIF:15519534
SNOMEDCT:193568000
GeneRIF:15677485
SNOMEDCT:193569008
GeneRIF:15370540
ICD9:365.89
MAT:0000237
seedhead
James Malone
BioportalImporter v.1.2
parovarium
FBbt:00004914
female accessory gland
Develops from male repressed primordium.[accessedResource: FBbt:00004914][accessDate: 2009-11-30]
BioportalImporter v.1.2
A zinc group element that has formula Zn.[accessedResource: CHEBI:27363][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
Zinc
CHEBI:27363
A measurement of physical damage, e.g. by a caterpillar on a plant leaf
damage intensity
by a caterpillar on a plant leaf
James Malone
CL:0000041
Any fully developed granular leukocyte whose nucleus contains multiple lobes joined by filamentous connections, especially a neutrophil.[accessedResource: BTO:0001026][accessDate: 2009-11-30]
mature eosinophil[accessedResource: CL:0000041][accessDate: 2009-11-30]
A fully differentiated eosinophil, a granular leukocyte with a nucleus that usually has two lobes connected by one or more slender threads of chromatin, and cytoplasm containing coarse, round granules that are uniform in size and which can be stained by the dye eosin.[accessedResource: CL:0000041][accessDate: 2009-11-30]
polymorphonuclear leukocyte
mature eosinophil leucocyte[accessedResource: CL:0000041][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
BTO:0001026
mature eosinocyte[accessedResource: CL:0000041][accessDate: 2009-11-30]
mature eosinophil leukocyte[accessedResource: CL:0000041][accessDate: 2009-11-30]
GeneRIF:15184199
GeneRIF:15684701
GeneRIF:11845300
GeneRIF:15367919
GeneRIF:14695120
GeneRIF:15489228
GeneRIF:12142723
GeneRIF:11823525
GeneRIF:12692180
GeneRIF:15007059
GeneRIF:15024729
GeneRIF:12660625
GeneRIF:16236890
GeneRIF:12919146
GeneRIF:16281647
GeneRIF:15025720
GeneRIF:12370389
GeneRIF:12948935
GeneRIF:12297838
GeneRIF:11877474
GeneRIF:12820707
GeneRIF:15463895
GeneRIF:15070876
GeneRIF:11872746
GeneRIF:12579467
GeneRIF:16267280
GeneRIF:15385508
GeneRIF:11667971
GeneRIF:15611333
ICD9:277.0
GeneRIF:12142724
GeneRIF:16207846
GeneRIF:15274124
GeneRIF:12732620
GeneRIF:15579374
cystic fibrosis
GeneRIF:11988083
GeneRIF:12847263
GeneRIF:16137181
GeneRIF:15537723
GeneRIF:15463896
NCIt:C2975
GeneRIF:11956211
SNOMEDCT:190905008
GeneRIF:12220181
GeneRIF:11809765
GeneRIF:15490240
DOID:1485
GeneRIF:15336594
GeneRIF:15781764
GeneRIF:14699484
GeneRIF:12070134
ICD9:277.00
SNOMEDCT:190911006
GeneRIF:15107292
James Malone
GeneRIF:15638824
GeneRIF:14685937
GeneRIF:15246975
GeneRIF:11984593
GeneRIF:15025858
GeneRIF:12151438
A congenital metabolic disorder affecting the exocrine glands, inherited as an autosomal trait. The secretions of exocrine glands are abnormal, resulting in excessively viscid mucus production which causes obstruction of passageways (including pancreatic and bile ducts, intestines, and bronchi). The sweat sodium and chloride content are increased. Symptoms usually appear in childhood and include meconium ileus, poor growth despite good appetite, malabsorption and foul bulky stools, chronic bronchitis with cough, recurrent pneumonia, bronchiectasis, emphysema, clubbing of the fingers, and salt depletion in hot weather. -- 2003[accessedResource: NCIt:C2975][accessDate: 2009-11-30]
GeneRIF:15738290
GeneRIF:12000722
GeneRIF:15964250
GeneRIF:15533353
GeneRIF:12547728
BioportalImporter v.1.2
GeneRIF:15463893
GeneRIF:12026214
GeneRIF:15964894
James Malone
blastula high
ZFS:0000012
James Malone
An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes.[accessedResource: CL:0000056][accessDate: 2009-11-30]
myoblast
An embryonic cell that becomes a cell of muscle fiber.[accessedResource: BTO:0000222][accessDate: 2009-11-30]
nonmesodermal cell
BioportalImporter v.1.2
BTO:0000222
CL:0000056
CHEBI:28748
(1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-amino-2,3,6-trideoxy-alpha-L-lyxo-hexopyranoside[accessedResource: CHEBI:28748][accessDate: 2009-11-30]
doxorubicin
A deoxy hexoside that has formula C27H29NO11.[accessedResource: CHEBI:28748][accessDate: 2009-11-30]
BioportalImporter v.1.2
GLI60
James Malone
hippocampus CA3
birn_anat:birnlex_1204
MA:0000952
Tomasz Adamusiak
GeneRIF:12521993
GeneRIF:12763926
GeneRIF:12855573
GeneRIF:14565662
GeneRIF:15514014
GeneRIF:15339846
GeneRIF:15160913
GeneRIF:14687619
GeneRIF:11986957
GeneRIF:14654078
GeneRIF:12592341
ICD9:204.1
GeneRIF:11042507
SNOMEDCT:51092000
GeneRIF:14592423
GeneRIF:12855567
GeneRIF:12860021
GeneRIF:12854897
BioportalImporter v.1.2
GeneRIF:16227675
GeneRIF:16014560
GeneRIF:14692527
GeneRIF:12700638
GeneRIF:12176902
GeneRIF:12127555
GeneRIF:15672409
GeneRIF:14504101
GeneRIF:15621797
GeneRIF:14687618
GeneRIF:12351410
GeneRIF:12002755
GeneRIF:12187026
GeneRIF:15809452
GeneRIF:15385937
GeneRIF:12393534
GeneRIF:15466924
GeneRIF:15325703
GeneRIF:12393602
GeneRIF:12359369
chronic lymphocytic leukemia
GeneRIF:12454749
GeneRIF:12144536
GeneRIF:12011454
ICD9:204.10
GeneRIF:12447961
GeneRIF:12555221
DOID:1040
GeneRIF:12835724
GeneRIF:16103882
GeneRIF:15470489
GeneRIF:11836173
GeneRIF:14574328
GeneRIF:11981828
GeneRIF:15158092
GeneRIF:12480711
GeneRIF:15613544
GeneRIF:12604404
GeneRIF:12379312
GeneRIF:15471955
GeneRIF:15861184
GeneRIF:15175625
SNOMEDCT:92814006
GeneRIF:15370248
GeneRIF:15059847
GeneRIF:12127553
GeneRIF:15541476
GeneRIF:15674425
B-cell chronic lymphocytic leukemia
GeneRIF:12091354
GeneRIF:12411322
GeneRIF:12857600
GeneRIF:12010828
GeneRIF:12010662
GeneRIF:15291354
GeneRIF:15488762
GeneRIF:15370246
GeneRIF:15927846
GeneRIF:11891278
GeneRIF:11986939
GeneRIF:15182336
CLL
GeneRIF:11929789
GeneRIF:15183896
GeneRIF:14637279
GeneRIF:11839681
GeneRIF:12931211
GeneRIF:15759031
GeneRIF:15731179
GeneRIF:12481899
chronic lymphoid leukemia
GeneRIF:15972449
GeneRIF:15802535
GeneRIF:15591116
GeneRIF:14996703
GeneRIF:12595313
GeneRIF:11943260
GeneRIF:15052938
James Malone
GeneRIF:16295759
GeneRIF:12644014
GeneRIF:14689061
GeneRIF:12100030
GeneRIF:15728130
GeneRIF:12958068
GeneRIF:15284121
MCIXC
James Malone
Ele Holloway
James Malone
SUM185PE
CS57570
CS57570 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158594&type=germplasm
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158594&type=germplasm
UO:0000175
James Malone
BioportalImporter v.1.2
A mass unit density which is equal to mass of an object in grams divided by the volume in liters.[accessedResource: UO:0000175][accessDate: 2009-11-30]
A gram per liter is a density unit which is equal to mass of an object in grams divided by the volume in liters.
g/L[accessedResource: UO:0000175][accessDate: 2009-11-30]
gram per liter
time before disease progression
James Malone
GeneRIF:15856430
GeneRIF:11859072
GeneRIF:12552965
GeneRIF:12784332
GeneRIF:14584041
GeneRIF:12538354
GeneRIF:15550849
A carcinoma arising from the breast, most commonly the terminal ductal-lobular unit. It is the most common malignant tumor in females. Risk factors include country of birth, family history, menstrual and reproductive history, fibrocystic disease and epithelial hyperplasia, exogenous estrogens, contraceptive agents, and ionizing radiation. The vast majority of breast carcinomas are adenocarcinomas (ductal or lobular). Breast carcinoma spreads by direct invasion, by the lymphatic route, and by the blood vessel route. The most common site of lymph node involvement is the axilla.[accessedResource: NCIt:C4872][accessDate: 2009-11-30]
GeneRIF:12522268
GeneRIF:15693887
GeneRIF:12105188
GeneRIF:10713110
BioportalImporter v.1.2
GeneRIF:11992405
DOID:3459
GeneRIF:11802810
GeneRIF:12015771
GeneRIF:16007173
GeneRIF:15592496
GeneRIF:11839578
Cancer, Breast[accessedResource: NCIt:C4872][accessDate: 2009-11-30]
GeneRIF:15856473
GeneRIF:12592371
GeneRIF:14966279
GeneRIF:15059886
GeneRIF:16273187
GeneRIF:12174926
GeneRIF:11909957
SNOMEDCT:254838004
GeneRIF:11986781
GeneRIF:15374639
GeneRIF:15999367
GeneRIF:15944917
GeneRIF:12637343
GeneRIF:15067342
GeneRIF:12566312
GeneRIF:15034868
GeneRIF:11724803
GeneRIF:15034014
Carcinoma of breast NOS (disorder)[accessedResource: DOID:3459][accessDate: 2009-11-30]
GeneRIF:15578430
GeneRIF:15743035
GeneRIF:14729059
GeneRIF:11994274
breast carcinoma
GeneRIF:15882617
GeneRIF:15156151
GeneRIF:12034875
GeneRIF:15073116
GeneRIF:16295419
GeneRIF:15867228
GeneRIF:15168344
GeneRIF:15920544
GeneRIF:16024059
GeneRIF:14519635
GeneRIF:14654792
GeneRIF:16049961
GeneRIF:15837735
GeneRIF:11962738
GeneRIF:15742334
Carcinoma of the Breast[accessedResource: NCIt:C4872][accessDate: 2009-11-30]
GeneRIF:16000313
GeneRIF:15059510
GeneRIF:12490973
GeneRIF:14638862
NCIt:C4872
GeneRIF:16054892
GeneRIF:14871985
GeneRIF:14666627
GeneRIF:12231533
Cancer of Breast[accessedResource: NCIt:C4872][accessDate: 2009-11-30]
GeneRIF:12581744
GeneRIF:12653579
GeneRIF:15149158
GeneRIF:15241822
GeneRIF:14612940
GeneRIF:15102684
GeneRIF:14692019
GeneRIF:15863392
GeneRIF:14687724
Carcinoma of breast (disorder)[accessedResource: DOID:3459][accessDate: 2009-11-30]
GeneRIF:15353581
GeneRIF:12650602
Cancer of the Breast[accessedResource: NCIt:C4872][accessDate: 2009-11-30]
GeneRIF:11891846
GeneRIF:15102687
GeneRIF:15451571
GeneRIF:12037665
James Malone
GeneRIF:11759817
GeneRIF:15492258
GeneRIF:15193258
GeneRIF:12499259
GeneRIF:12648519
GeneRIF:12879463
GeneRIF:12529969
GeneRIF:11822878
Mammary Carcinoma[accessedResource: DOID:3459][accessDate: 2009-11-30]
SNOMEDCT:286898006
GeneRIF:14500350
GeneRIF:12496062
GeneRIF:16027728
GeneRIF:15935701
GeneRIF:12878859
GeneRIF:12115372
GeneRIF:12462387
GeneRIF:12640109
GeneRIF:15671541
GeneRIF:12133473
GeneRIF:16144914
GeneRIF:12197229
GeneRIF:12452027
GeneRIF:11948115
GeneRIF:14991534
GeneRIF:15241820
Carcinoma of breast[accessedResource: DOID:3459][accessDate: 2009-11-30]
CHEBI:37848
plant growth hormone
James Malone
CHEBI:37848
CS57664
http://www.arabidopsis.org/servlets/TairObject?id=1005158688&type=germplasm
CS57664 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158688&type=germplasm
James Malone
GeneRIF:16298968
Cervix Cancer[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:15856299
GeneRIF:15744560
GeneRIF:15066318
Cervical carcinoma may arise from either the exocervical squamous epithelium or the endocervical glandular epithelium. The major histologic types of cervical carcinoma are: squamous carcinoma, adenocarcinoma, adenosquamous carcinoma, adenoid cystic carcinoma and undifferentiated carcinoma.
[Source: NCI Thesaurus C9039]
GeneRIF:12894545
GeneRIF:15619642
GeneRIF:15736426
GeneRIF:15131051
Uterine Cervix Carcinoma[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15001834
SNOMEDCT:285432005
CARCINOMA OF CERVIX[accessedResource: DOID:2893][accessDate: 2009-11-30]
Cancer of Uterine Cervix[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:15816636
GeneRIF:12820323
GeneRIF:11809691
GeneRIF:12007187
Cervix carcinoma[accessedResource: DOID:2893][accessDate: 2009-11-30]
GeneRIF:15047823
GeneRIF:16047742
Carcinoma cervix uteri[accessedResource: DOID:2893][accessDate: 2009-11-30]
Carcinoma of Cervix Uteri[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
Cervical carcinoma (uterus)[accessedResource: DOID:2893][accessDate: 2009-11-30]
GeneRIF:12392301
Carcinoma of the Uterine Cervix[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
NCIt:C9039
GeneRIF:12451999
Cancer of cervix[accessedResource: DOID:2893][accessDate: 2009-11-30]
cervical carcinoma
DOID:2893
Carcinoma of the Cervix[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:11920583
Cervical Cancer[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:12893195
GeneRIF:12174873
Cancer of the Uterine Cervix[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:14578179
GeneRIF:12057898
Uterine Cervix Cancer[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:14584072
GeneRIF:11957139
GeneRIF:15201979
GeneRIF:15386342
GeneRIF:15702969
Carcinoma of cervix (disorder)[accessedResource: DOID:2893][accessDate: 2009-11-30]
Carcinoma of the Cervix Uteri[accessedResource: DOID:2893][accessDate: 2009-11-30]
James Malone
Cancer of the Cervix[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
Carcinoma of Uterine Cervix[accessedResource: NCIt:C9039][accessDate: 2009-11-30]
GeneRIF:12748469
GeneRIF:11956602
population
NIFSTD:sao2254405550
A population is a material entity consisting of individuals which share a particular characteristic such as inhabiting a particular region or area or ability to interbreed.
Tomasz Adamusiak
James Malone
James Malone
Ele Holloway
SN56.B5.G4
James Malone
damage response
Physiological response to e.g. leaf's response to physical damage by a caterpillar on a plant leaf
leaf's response to physical damage by a caterpillar on a plant leaf
James Malone
cleavage 16-cell
ZFS:0000005
Any of six small voluntary muscles that pass between the eyeball and the orbit and control the movement of the eyeball in relation to the orbit.[accessedResource: BTO:0001579][accessDate: 2009-11-30]
Extra-ocular muscle[accessedResource: FMA:49033][accessDate: 2009-11-30]
FMA:49033
Extrinsic muscle of eyeball[accessedResource: FMA:49033][accessDate: 2009-11-30]
extraocular muscle
BioportalImporter v.1.2
BTO:0001579
http://neurolex.org/wiki/Category:Hilus_of_dentate_gyrus
MA:0000953
Tomasz Adamusiak
hippocampus CA4
GLI72
James Malone
BY4741
James Malone
cancer cell line
Any of the immature blood cells that develop in the bone marrow, such as those involved in hematopoiesis.[accessedResource: BTO:0001441][accessDate: 2009-11-30]
A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage.[accessedResource: CL:0000763][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CL:0000763
BTO:0001441
myeloid cell
BioportalImporter v.1.2
dinitrophenol
CHEBI:39352
cytomegalovirus infection[accessedResource: DOID:11259][accessDate: 2009-11-30]
DOID:11259
Human Herpesvirus 5
GeneRIF:15528370
Salivary gland virus disease[accessedResource: DOID:11259][accessDate: 2009-11-30]
Infection with CYTOMEGALOVIRUS, characterized by enlarged cells bearing intranuclear inclusions. Infection may be in almost any organ, but the salivary glands are the most common site in children, as are the lungs in adults.[accessedResource: MSH:D003586][accessDate: 2009-11-30]
SNOMEDCT:187456009
GeneRIF:12478407
GeneRIF:14993594
Cytomegaloviral disease, unspecified (disorder)[accessedResource: DOID:11259][accessDate: 2009-11-30]
GeneRIF:14990723
Cytomagalovirus infection[accessedResource: DOID:11259][accessDate: 2009-11-30]
Cytomegalovirus infection (disorder)[accessedResource: DOID:11259][accessDate: 2009-11-30]
cytomegalovirus
ICD9:078.5
BioportalImporter v.1.2
GeneRIF:12388817
James Malone
GeneRIF:16272328
GeneRIF:15452223
GeneRIF:15194307
Cytomegaloviral disease[accessedResource: DOID:11259][accessDate: 2009-11-30]
GeneRIF:12370359
HCMV
GeneRIF:16267761
SNOMEDCT:28944009
MSH:D003586
Cytomegaloviral disease, unspecified[accessedResource: DOID:11259][accessDate: 2009-11-30]
GeneRIF:15021824
GeneRIF:15890971
GeneRIF:14962896
GeneRIF:12466474
adult eye primordium
FBbt:00005515
James Malone
BioportalImporter v.1.2
.[accessedResource: FBbt:00005515][accessDate: 2009-11-30]
The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch.
L2 larva
WBls:0000027
James Malone
James Malone
CS57560 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158584&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158584&type=germplasm
CS57560
BioportalImporter v.1.2
NIFSTD:birnlex_12620
GeneRIF:11593297
GeneRIF:15493013
GeneRIF:14654927
GeneRIF:15867231
GeneRIF:14676120
GBM (Glioblastoma)[accessedResource: DOID:3068][accessDate: 2009-11-30]
GeneRIF:12704666
GeneRIF:15094455
SNOMEDCT:63634009
GeneRIF:12125737
grade IV astrocytoma[accessedResource: NCIt:C3058][accessDate: 2009-11-30]
GeneRIF:15986444
GeneRIF:14730346
GeneRIF:14712484
GeneRIF:15509542
GeneRIF:16078115
GeneRIF:15893739
GeneRIF:15827123
GeneRIF:16150119
GeneRIF:15332332
SNOMEDCT:269506004
GeneRIF:16171786
Glioblastoma NOS (morphologic abnormality)[accessedResource: DOID:3068][accessDate: 2009-11-30]
Glioblastoma[accessedResource: DOID:3068][accessDate: 2009-11-30]
GeneRIF:12543796
A malignant form of astrocytoma histologically characterized by pleomorphism of cells, nuclear atypia, microhemorrhage, and necrosis. They may arise in any region of the central nervous system, with a predilection for the cerebral hemispheres, basal ganglia, and commissural pathways. Clinical presentation most frequently occurs in the fifth or sixth decade of life with focal neurologic signs or seizures.[accessedResource: MSH:D005909][accessDate: 2009-11-30]
GeneRIF:16264179
GeneRIF:15364411
GeneRIF:15967113
GeneRIF:12483523
GeneRIF:11980654
GeneRIF:12507886
spongioblastoma multiforme[accessedResource: DOID:3068][accessDate: 2009-11-30]
GeneRIF:14686729
GeneRIF:15967096
GeneRIF:15041700
glioblastoma multiforme
GeneRIF:15332324
GeneRIF:15696971
GeneRIF:14753494
The most malignant astrocytic tumor (WHO grade IV). It is composed of poorly differentiated neoplastic astrocytes and it is characterized by the presence of cellular polymorphism, nuclear atypia, brisk mitotic activity, vascular thrombosis, microvascular proliferation and necrosis. It typically affects adults and is preferentially located in the cerebral hemispheres. It may develop from diffuse astrocytoma WHO grade II or anaplastic astrocytoma (secondary glioblastoma), but more frequently, it manifests after a short clinical history de novo, without evidence of a less malignant precursor lesion (primary glioblastoma). Two histologic variants are recognized: giant cell glioblastoma and gliosarcoma. (WHO)[accessedResource: NCIt:C3058][accessDate: 2009-11-30]
DOID:3068
GeneRIF:15618223
GeneRIF:12783249
GeneRIF:12845671
GeneRIF:15119015
GeneRIF:15928303
GeneRIF:11741977
GeneRIF:15029197
GeneRIF:15627206
GeneRIF:12169389
GeneRIF:12918061
GeneRIF:12084347
GeneRIF:11953893
GeneRIF:15153340
Grade IV Astrocytic Neoplasm[accessedResource: NCIt:C3058][accessDate: 2009-11-30]
GeneRIF:15339919
GeneRIF:14701753
GeneRIF:15719270
GeneRIF:11916499
James Malone
Grade IV Astrocytic Tumor[accessedResource: NCIt:C3058][accessDate: 2009-11-30]
GeneRIF:15561105
GeneRIF:12407114
GeneRIF:12133571
GeneRIF:15908427
GeneRIF:15122332
GeneRIF:16051185
GeneRIF:12517803
NIFSTD:birnlex_12621
GeneRIF:14692702
GeneRIF:16251422
NCIt:C3058
GeneRIF:16051596
GeneRIF:14519668
GeneRIF:11856869
Glioblastoma (morphologic abnormality)[accessedResource: DOID:3068][accessDate: 2009-11-30]
GeneRIF:16003758
GeneRIF:15557280
GeneRIF:12082608
Tomasz Adamusiak
GeneRIF:11875718
MSH:D005909
GeneRIF:12850541
GeneRIF:15605984
GeneRIF:11809760
GeneRIF:12839970
GeneRIF:12414663
GeneRIF:12073047
GeneRIF:15198128
GeneRIF:16215635
GeneRIF:14555979
GeneRIF:12445161
GeneRIF:15975137
GeneRIF:15906353
GeneRIF:11959893
James Malone
SUM190PT
MEC1
James Malone
Ele Holloway
CS57816
http://www.arabidopsis.org/servlets/TairObject?id=1005158840&type=germplasm
James Malone
CS57816 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158840&type=germplasm
time to development of distant metastases
James Malone
James Malone
MCF12A
Tomasz Adamusiak
Jie Zheng
James Malone
A mix of specimens from multiple individuals.
MO_779
pool
GeneRIF:12559633
GeneRIF:11869041
ICD9:579.0
Celiac disease (disorder)[accessedResource: DOID:10608][accessDate: 2009-11-30]
GeneRIF:15617864
GeneRIF:11908704
GeneRIF:14991945
Coeliac disease[accessedResource: DOID:10608][accessDate: 2009-11-30]
NCIt:C26714
SNOMEDCT:396331005
GeneRIF:12959221
GeneRIF:15657618
GeneRIF:12439623
James Malone
GeneRIF:15826953
GeneRIF:12743709
GeneRIF:12759242
GeneRIF:16026592
A malabsorption syndrome that is precipitated by the ingestion of GLUTEN-containing foods, such as wheat, rye, and barley. It is characterized by INFLAMMATION of the SMALL INTESTINE, loss of MICROVILLI structure, failed INTESTINAL ABSORPTION, and MALNUTRITION.[accessedResource: MSH:D002446][accessDate: 2009-11-30]
GeneRIF:15215891
GeneRIF:15174785
celiac disease
Non Tropical Sprue[accessedResource: NCIt:C26714][accessDate: 2009-11-30]
GeneRIF:12074713
GeneRIF:11972887
GeneRIF:12410804
GeneRIF:16285941
Gluten-Induced Enteropathy[accessedResource: NCIt:C26714][accessDate: 2009-11-30]
GeneRIF:15645196
GeneRIF:15324937
DOID:10608
SNOMEDCT:275404008
GeneRIF:12755416
MSH:D002446
GeneRIF:11826026
GeneRIF:12093810
GeneRIF:12788988
GeneRIF:14675396
Celiac disease NOS (disorder)[accessedResource: DOID:10608][accessDate: 2009-11-30]
GeneRIF:16112033
GeneRIF:12675238
GeneRIF:12732349
GeneRIF:12039527
Steatorrhoea - idiopathic[accessedResource: DOID:10608][accessDate: 2009-11-30]
GeneRIF:15746535
Idiopathic steatorrhea[accessedResource: DOID:10608][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12542746
Coeliac disease [Ambiguous][accessedResource: DOID:10608][accessDate: 2009-11-30]
GeneRIF:12421937
GeneRIF:15120190
GeneRIF:12698366
SNOMEDCT:197481005
celiac sprue[accessedResource: DOID:10608][accessDate: 2009-11-30]
DOID:3458
breast adenocarcinoma
James Malone
OBI_0200000
James Malone
BioportalImporter v.1.2
A data transformation is a process which produces output data from input data[accessedResource: OBI_0200000][accessDate: 2009-11-30]
A data transformation is a process which produces output data from input data - e.g. the application of a clustering protocol to microarray data or the application of a statistical testing method on a primary data set to determine a p-value.
data transformation
Secondary olfactory cortex[accessedResource: FMA:72356][accessDate: 2009-11-30]
James Malone
entorhinal cortex
FMA:72356
Entorhinal area[accessedResource: FMA:72356][accessDate: 2009-11-30]
BioportalImporter v.1.2
Secondary olfactory cortical area (Carpenter)[accessedResource: FMA:72356][accessDate: 2009-11-30]
Area 28 of Brodmann (Crosby)[accessedResource: FMA:72356][accessDate: 2009-11-30]
James Malone
CHEBI:37887
CHEBI:37887
An agent that binds to but does not activate adrenergic receptors thereby blocking the actions of endogenous or exogenous adrenergic agonists.[accessedResource: CHEBI:37887][accessDate: 2009-11-30]
BioportalImporter v.1.2
adrenergic antagonist
ZFS:0000014
James Malone
blastula sphere
http://www.arabidopsis.org/servlets/TairObject?id=1005158690&type=germplasm
CS57664 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158690&type=germplasm
James Malone
CS57666
James Malone
Ele Holloway
SKMEL5
BioportalImporter v.1.2
B-Lymphocyte[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
true
Immunologically important lymphocyte that is not thymus-dependent, is either short-lived and naive or long-lived and of memory phenotype, and resembles the bursa-derived lymphocyte of birds in that it is responsible for the production of immunoglobulins.[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
obsolete_B-lymphocyte
Bursa-Dependent Lymphocytes[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
B Cells[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
CL:0000236
NCIt:C12474
Bursa-Equivalent Lymphocyte[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
A lymphocyte of B lineage with the phenotype CD19-positive and surface immunoglobulin-positive.[accessedResource: CL:0000236][accessDate: 2009-11-30]
Consolidated with B cell (EFO_0000101), use B cell class instead.
B-Lymphocytes[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
B Cell[accessedResource: NCIt:C12474][accessDate: 2009-11-30]
A mannitol that has formula C6H14O6.[accessedResource: CHEBI:16899][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:16899
D-mannitol
birn_anat:nlx_anat_20090306
FMAID:77383
nucleus accumbens core
Tomasz Adamusiak
GM06985
James Malone
ZFS:0000033
hatching long-pec
James Malone
James Malone
CS57563
http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311984
CS57563 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=stock&id=1000311984
MEG01
James Malone
Ele Holloway
James Malone
SUM225CWN
http://www.arabidopsis.org/servlets/TairObject?id=1005158844&type=germplasm
James Malone
CS57820 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158844&type=germplasm
CS57820
BioportalImporter v.1.2
James Malone
CL:0000243
true
use EFO_0000517
A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear.[accessedResource: CL:0000243][accessDate: 2009-11-30]
obsolete_glial cell (sensu Vertebrata)
1.9
Arabidopsis thaliana
Strain or line specific to Arabidopsis thaliana.
James Malone
Tumor[accessedResource: NCIt:C3262][accessDate: 2009-11-30]
An abnormal tissue growth resulted from uncontrolled cell proliferation. Benign neoplastic cells resemble normal cells without exhibiting significant cytologic atypia, while malignant ones exhibit overt signs such as dysplastic features, atypical mitotic figures, necrosis, nuclear pleomorphism, and anaplasia. Representative examples of benign neoplasms include papillomas, cystadenomas, and lipomas; malignant neoplasms include carcinomas, sarcomas, lymphomas, and leukemias.
An abnormal tissue growth resulted from uncontrolled cell proliferation.
[Source: NCI Thesaurus C3262]
Neoplastic Growth[accessedResource: NCIt:C3262][accessDate: 2009-11-30]
neoplasm
Neoplasms[accessedResource: NCIt:C3262][accessDate: 2009-11-30]
NEOPLASMS BENIGN, MALIGNANT AND UNSPECIFIED (INCL CYSTS AND POLYPS)[accessedResource: NCIt:C3262][accessDate: 2009-11-30]
Neoplasia[accessedResource: NCIt:C3262][accessDate: 2009-11-30]
James Malone
NCIt:C3262
A benign or malignant tissue growth resulting from uncontrolled cell proliferation. Benign neoplastic cells resemble normal cells without exhibiting significant cytologic atypia, while malignant cells exhibit overt signs such as dysplastic features, atypical mitotic figures, necrosis, nuclear pleomorphism, and anaplasia. Representative examples of benign neoplasms include papillomas, cystadenomas, and lipomas; malignant neoplasms include carcinomas, sarcomas, lymphomas, and leukemias.[accessedResource: NCIt:C3262][accessDate: 2009-11-30]
BioportalImporter v.1.2
DOID:5864
dedifferentiated chondrosarcoma
James Malone
BioportalImporter v.1.2
An aggressive morphologic variant of chondrosarcoma. It is composed of a low grade chondrosarcoma and a high grade non-cartilagenous sarcomatous component. Due to the aggressive nature of the disease, its prognosis is poor.
[Source: NCI Thesaurus C6476]
SNOMEDCT:128776008
NCIt:C6476
Dedifferentiated chondrosarcoma (morphologic abnormality)[accessedResource: DOID:5864][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
An agent that binds to but does not activate alpha-adrenergic receptors thereby blocking the actions of endogenous or exogenous alpha-adrenergic agonists. alpha-Adrenergic antagonists are used in the treatment of hypertension, vasospasm, peripheral vascular disease, shock, and pheochromocytoma.[accessedResource: CHEBI:37890][accessDate: 2009-11-30]
CHEBI:37890
CHEBI:37890
alpha-adrenergic antagonist
SW480
James Malone
Ele Holloway
DOID:10762
GeneRIF:15754412
BioportalImporter v.1.2
GeneRIF:12730888
GeneRIF:15513950
SNOMEDCT:34742003
MSH:D006975
GeneRIF:12713865
GeneRIF:15222038
GeneRIF:14699044
GeneRIF:14525948
Portal hypertension (disorder)[accessedResource: DOID:10762][accessDate: 2009-11-30]
ICD9:572.3
James Malone
GeneRIF:14572769
Abnormal increase of resistance to blood flow within the hepatic PORTAL SYSTEM, frequently seen in LIVER CIRRHOSIS and conditions with obstruction of the PORTAL VEIN.[accessedResource: MSH:D006975][accessDate: 2009-11-30]
GeneRIF:15513955
GeneRIF:15849554
GeneRIF:15287858
portal hypertension
GeneRIF:14990148
obsolete_test result
true
Not needed.
The recorded value of the outcome of some test.
CS57646
http://www.arabidopsis.org/servlets/TairObject?id=1005158670&type=germplasm
James Malone
CS57646 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158670&type=germplasm
GATA-1–null erythroblast
Tomasz Adamusiak
The total sum of the genetic information of an organism that is known and relevant to the experiment being performed, including chromosomal, plasmid, viral or other genetic material which has been introduced into the organism either prior to or during the experiment.
Information, making the distinction between the actual physical material (e.g. a cell) and the information about the genetic content (genotype).
NIFSTD:birnlex_2023
James Malone
genotype
Jie Zheng
MO_51
James Malone
MO_628
pM[accessedResource: UO:0000066][accessDate: 2009-11-30]
BioportalImporter v.1.2
UO:0000066
Tomasz Adamusiak
picomolar
Jie Zheng
A unit of molarity which is equal to 10^[-12] M.[accessedResource: UO:0000066][accessDate: 2009-11-30]
CAMA1
James Malone
UO:0000045
base unit
James Malone
BioportalImporter v.1.2
A unit which is one of a particular measure to which all measures of that type can be related.[accessedResource: UO:0000045][accessDate: 2009-11-30]
A base unit is a unit which is used to measure a paticular type which is independent from all other base units and from which all measures of that type can be derived, for example, a length base unit of the meter. This is akin to the SI base unit system.
MO_914
Tomasz Adamusiak
imprinting design
James Malone
Ele Holloway
MESSA
SH-SY5Y
CRL-2266
James Malone
Ele Holloway
GeneRIF:12816863
James Malone
GeneRIF:11771735
GeneRIF:15804423
GeneRIF:12576745
GeneRIF:15068237
GeneRIF:12957488
GeneRIF:15068254
BioportalImporter v.1.2
DOID:14250
GeneRIF:11824616
GeneRIF:12796830
GeneRIF:12400059
GeneRIF:15068242
GeneRIF:12393509
GeneRIF:11771751
GeneRIF:15169762
GeneRIF:14678752
GeneRIF:12628594
GeneRIF:11565556
GeneRIF:12650976
GeneRIF:12943237
Down's syndrome - trisomy 21[accessedResource: DOID:14250][accessDate: 2009-11-30]
GeneRIF:15255950
GeneRIF:11856873
GeneRIF:16222229
ICD9:758.0
GeneRIF:12200143
GeneRIF:15184603
GeneRIF:14701734
GeneRIF:12032275
G Trisomy[accessedResource: DOID:14250][accessDate: 2009-11-30]
GeneRIF:14738882
GeneRIF:15820773
GeneRIF:11331941
GeneRIF:15103709
GeneRIF:12172547
GeneRIF:15946822
GeneRIF:12586620
GeneRIF:12931206
GeneRIF:11771736
GeneRIF:11771755
GeneRIF:11879646
GeneRIF:16231093
GeneRIF:14636651
GeneRIF:11771746
A chromosome disorder associated either with an extra chromosome 21 or an effective trisomy for chromosome 21. Clinical manifestations include hypotonia, short stature, brachycephaly, upslanting palpebral fissures, epicanthus, Brushfield spots on the iris, protruding tongue, small ears, short, broad hands, fifth finger clinodactyly, Simian crease, and moderate to severe MENTAL RETARDATION. Cardiac and gastrointestinal malformations, a marked increase in the incidence of LEUKEMIA, and the early onset of ALZHEIMER DISEASE are also associated with this condition. Pathologic features include the development of NEUROFIBRILLARY TANGLES in neurons and the deposition of AMYLOID BETA-PROTEIN, similar to the pathology of ALZHEIMER DISEASE. (Menkes, Textbook of Child Neurology, 5th ed, p213)[accessedResource: MSH:D004314][accessDate: 2009-11-30]
GeneRIF:15068244
GeneRIF:12923861
GeneRIF:15068241
GeneRIF:12895444
GeneRIF:12499044
GeneRIF:15661359
SNOMEDCT:41040004
GeneRIF:16274669
GeneRIF:15068251
GeneRIF:15694837
Complete trisomy 21 syndrome (disorder)[accessedResource: DOID:14250][accessDate: 2009-11-30]
A chromosomal dysgenesis syndrome resulting from a triplication or translocation of chromosome 21. Down syndrome occurs in approximately 1:700 live births. Abnormalities are variable from individual to individual and may include mental retardation, retarded growth, flat hypoplastic face with short nose, prominent epicanthic skin folds, small low-set ears with prominent antihelix, fissured and thickened tongue, laxness of joint ligaments, pelvic dysplasia, broad hands and feet, stubby fingers, transverse palmar crease, lenticular opacities and heart disease. Patients with Down syndrome have an estimated 10 to 30-fold increased risk for leukemia; most have symptoms of Alzheimer's disease by age 40. Also known as trisomy 21 syndrome. --2004[accessedResource: NCIt:C2993][accessDate: 2009-11-30]
Tomasz Adamusiak
Down's syndrome NOS[accessedResource: DOID:14250][accessDate: 2009-11-30]
Down's syndrome NOS (disorder)[accessedResource: DOID:14250][accessDate: 2009-11-30]
GeneRIF:12070657
NIFSTD:nlx_dys_20090502
GeneRIF:11920898
GeneRIF:12109594
GeneRIF:15068245
GeneRIF:11771757
GeneRIF:11771738
GeneRIF:14656875
GeneRIF:12080391
GeneRIF:12459318
GeneRIF:11771745
GeneRIF:11771762
GeneRIF:15068243
GeneRIF:11771750
MSH:D004314
GeneRIF:12771203
GeneRIF:11771764
GeneRIF:11810642
GeneRIF:12767918
trisomy 21 syndrome[accessedResource: DOID:14250][accessDate: 2009-11-30]
GeneRIF:12359327
NCIt:C2993
GeneRIF:14615042
GeneRIF:14512321
GeneRIF:11771749
GeneRIF:12529699
Downs syndrome[accessedResource: DOID:14250][accessDate: 2009-11-30]
GeneRIF:12145461
GeneRIF:12515899
GeneRIF:15082224
SNOMEDCT:254263008
GeneRIF:15358155
GeneRIF:11771758
GeneRIF:12469345
GeneRIF:15068239
Down syndrome
BioportalImporter v.1.2
CHEBI:41922
An estrogen that has formula C18H20O2.[accessedResource: CHEBI:41922][accessDate: 2009-11-30]
diethylstilbestrol
4,4'-(3E)-hex-3-ene-3,4-diyldiphenol[accessedResource: CHEBI:41922][accessDate: 2009-11-30]
James Malone
James Malone
CS57551
http://www.arabidopsis.org/servlets/TairObject?id=1005158575&type=germplasm
CS57551 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158575&type=germplasm
Tomasz Adamusiak
nucleus accumbens shell
birn_anat:nlx_anat_20090307
FMAID:77387
James Malone
pharyngula prim-25
ZFS:0000031
James Malone
MCF 10A
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158793&type=germplasm
CS57769 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158793&type=germplasm
CS57769
Tomasz Adamusiak
Jie Zheng
A description of the method used to deliver e.g. a compound or solution for treatment.
a compound or solution for treatment.
delivery method
MO_223
James Malone
Ele Holloway
ssMCF7
CHEBI:37930
CHEBI:37930
James Malone
phenothiazine antipsychotic drug
Ara-C-sensitive parental cell line
time
James Malone
James Malone
Ele Holloway
Pt45P1
James Malone
SNOMEDCT:362968007
reproductive system disease
genital system disease[accessedResource: DOID:15][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
DOID:15
A diverse group of metabolic diseases characterized by errors in the biosynthetic pathway of HEME in the LIVER, the BONE MARROW, or both. They are classified by the deficiency of specific enzymes, the tissue site of enzyme defect, or the clinical features that include neurological (acute) or cutaneous (skin lesions). Porphyrias can be hereditary or acquired as a result of toxicity to the hepatic or erythropoietic marrow tissues.[accessedResource: MSH:D011164][accessDate: 2009-11-30]
porphyrias[accessedResource: DOID:13268][accessDate: 2009-11-30]
GeneRIF:16026339
MSH:D011164
Porphyrinopathy (disorder)[accessedResource: DOID:13268][accessDate: 2009-11-30]
Disorders of porphyrin metabolism (disorder)
DOID:13268
disorder of porphyrin metabolism (disorder)[accessedResource: DOID:13268][accessDate: 2009-11-30]
disorder of porphyrin metabolism[accessedResource: DOID:13268][accessDate: 2009-11-30]
disorder of porphyrin and hem metabolism[accessedResource: DOID:13268][accessDate: 2009-11-30]
Disorders of porphyrin metabolism
Porphyria (disorder)[accessedResource: DOID:13268][accessDate: 2009-11-30]
SNOMEDCT:371628009
Hematoporphyria[accessedResource: DOID:13268][accessDate: 2009-11-30]
porphyria
ICD9:277.1
Porphyria NOS (disorder)[accessedResource: DOID:13268][accessDate: 2009-11-30]
SNOMEDCT:190916001
SNOMEDCT:29094004
BioportalImporter v.1.2
James Malone
James Malone
BioportalImporter v.1.2
The great band of commissural fibers uniting the cerebral hemispheres of higher mammals including humans.[accessedResource: BTO:0000615][accessDate: 2009-11-30]
A white matter structure within the cleft that separates the left and right cerebral hemispheres in the mammalian brain. It is composed of a wide, flat bundle of 200-250 million axonal projections.[accessedResource: NCIt:C12446][accessDate: 2009-11-30]
corpus callosum
NCIt:C12446
BTO:0000615
CS57648 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158672&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158672&type=germplasm
James Malone
CS57648
UO:0000001
James Malone
BioportalImporter v.1.2
A length unit is a base unit which is a standard measure of the distance between two points.
A base unit which is a standard measure of the distance between two points.[accessedResource: UO:0000001][accessDate: 2009-11-30]
length unit
CC531
James Malone
Jie Zheng
A unit of molarity which is equal to 10^[-15] M.[accessedResource: UO:0000073][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
UO:0000073
femtomolar
James Malone
MO_898
fM[accessedResource: UO:0000073][accessDate: 2009-11-30]
MO_892
development or differentiation design
Tomasz Adamusiak
James Malone
Ele Holloway
MG63
GeneRIF:12080392
GeneRIF:12393799
GeneRIF:12968670
GeneRIF:14727813
GeneRIF:12111646
GeneRIF:12527136
GeneRIF:12022040
GeneRIF:14648237
GeneRIF:15099592
GeneRIF:12107438
BioportalImporter v.1.2
GeneRIF:12172392
GeneRIF:15710493
GeneRIF:12471561
SNOMEDCT:267678002
GeneRIF:12865758
GeneRIF:11584050
GeneRIF:15944150
GeneRIF:11977173
GeneRIF:11870684
NCIt:C27644
GeneRIF:15855033
GeneRIF:12746400
GeneRIF:12384781
GeneRIF:12687499
GeneRIF:12382103
GeneRIF:15891640
GeneRIF:12910270
GeneRIF:12620969
GeneRIF:12505163
GeneRIF:11907649
GeneRIF:12081719
GeneRIF:12621333
GeneRIF:12642503
GeneRIF:12068628
GeneRIF:15286153
GeneRIF:12403827
GeneRIF:12062767
GeneRIF:11333869
GeneRIF:15314067
GeneRIF:15226564
GeneRIF:11807148
GeneRIF:12032315
GeneRIF:15905332
DOID:10005
GeneRIF:12161469
GeneRIF:11976689
GeneRIF:14985365
GeneRIF:14556203
GeneRIF:14570705
GeneRIF:12920079
GeneRIF:12792423
GeneRIF:11709538
GeneRIF:12687421
Deafness NOS (finding)[accessedResource: DOID:10005][accessDate: 2009-11-30]
GeneRIF:16155570
GeneRIF:14532115
GeneRIF:11924819
GeneRIF:15015131
GeneRIF:12393794
GeneRIF:11850618
GeneRIF:12107817
GeneRIF:12176036
Deafness, NOS[accessedResource: DOID:10005][accessDate: 2009-11-30]
GeneRIF:15996220
GeneRIF:15490091
GeneRIF:12419304
GeneRIF:15464308
GeneRIF:12136232
GeneRIF:12370316
GeneRIF:12140191
GeneRIF:11972037
GeneRIF:12560944
GeneRIF:12833159
GeneRIF:15579465
GeneRIF:12075507
deafness
GeneRIF:12651873
GeneRIF:12655418
GeneRIF:16088916
GeneRIF:11432967
GeneRIF:15083701
GeneRIF:11896458
GeneRIF:15326186
GeneRIF:14644237
GeneRIF:12522556
GeneRIF:12145746
GeneRIF:15857852
GeneRIF:12904681
GeneRIF:15044642
GeneRIF:12189487
GeneRIF:15350283
GeneRIF:12114484
GeneRIF:12325029
GeneRIF:14684684
GeneRIF:12810983
GeneRIF:11668644
GeneRIF:15482471
GeneRIF:12127154
GeneRIF:15300860
James Malone
GeneRIF:12064630
GeneRIF:15886106
GeneRIF:12490528
GeneRIF:14585957
GeneRIF:12654476
GeneRIF:12189493
GeneRIF:12746422
GeneRIF:14552423
GeneRIF:12717441
GeneRIF:15542390
GeneRIF:12169891
GeneRIF:12483295
GeneRIF:12121736
GeneRIF:12393046
CS57556
http://www.arabidopsis.org/servlets/TairObject?id=1005158580&type=germplasm
CS57556 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158580&type=germplasm
James Malone
CHEBI:28262
dimethyl sulfoxide
(methanesulfinyl)methane[accessedResource: CHEBI:28262][accessDate: 2009-11-30]
A sulfoxide that has formula C2H6OS.[accessedResource: CHEBI:28262][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
pharyngula prim-15
James Malone
ZFS:0000030
A large granular lymphocyte capable of killing a tumor or microbial cell without prior exposure to the target cell and without having it presented with or marked by a histocompatibility antigen.[accessedResource: BTO:0000914][accessDate: 2009-11-30]
NK cell[accessedResource: CL:0000623][accessDate: 2009-11-30]
James Malone
natural killer cell
A lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells.[accessedResource: CL:0000623][accessDate: 2009-11-30]
CL:0000623
natural killer
BioportalImporter v.1.2
BTO:0000914
histamine antagonist
CHEBI:37956
CHEBI:37956
Histamine antagonists are the drugs that bind to but do not activate histamine receptors, thereby blocking the actions of histamine or histamine agonists.[accessedResource: CHEBI:37956][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
dendritic cell
A special type of cell that is a key regulator of the immune system, acting as a professional antigen-presenting cell (APC) capable of activating naive T cells and stimulating the growth and differentiation of B cells. Dendritic cells are found, for example, in the lymph nodes and spleen. As an APC, a dendritic cell can retain antigen for long periods on its surface, present the antigen to a T or B cell and so influence their behavior.[accessedResource: BTO:0002042][accessDate: 2009-11-30]
A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation.[accessedResource: CL:0000451][accessDate: 2009-11-30]
CL:0000451
BTO:0002042
James Malone
BioportalImporter v.1.2
true
obsolete_B-precursor acute lymphoblastic leukemia
James Malone
1.5
Duplicate with B-cell acute lymphoblastic leukemia (EFO_0000094) use this instead
A malignant form of astrocytoma histologically characterized by pleomorphism of cells, nuclear atypia, microhemorrhage, and necrosis. They may arise in any region of the central nervous system, with a predilection for the cerebral hemispheres, basal ganglia, and commissural pathways. Clinical presentation most frequently occurs in the fifth or sixth decade of life with focal neurologic signs or seizures.[accessedResource: MSH:D005909][accessDate: 2009-11-30]
A rare histological variant of glioblastoma (WHO grade IV) with a predominance of bizarre, multinucleated giant cells, an occasionally abundant stromal reticulin network, and a high frequency of TP53 mutations. (WHO)[accessedResource: NCIt:C4325][accessDate: 2009-11-30]
DOID:3074
Giant Cell Glioblastoma[accessedResource: NCIt:C4325][accessDate: 2009-11-30]
obsolete_brain tumor glioblastoma
true
Monstrocellular sarcoma [obs][accessedResource: DOID:3074][accessDate: 2009-11-30]
NCIt:C4325
BioportalImporter v.1.2
MSH:D005909
SNOMEDCT:44529004
Bone Marrow (MMHCC)[accessedResource: NCIt:C22552][accessDate: 2009-11-30]
NCIt:C22552
obsolete_bone marrow MMHCC
Obsolete: No longer required in EFO
James Malone
BioportalImporter v.1.2
true
A complication of PREGNANCY, characterized by a complex of symptoms including maternal HYPERTENSION and PROTEINURIA with or without pathological EDEMA. Symptoms may range between mild and severe. Pre-eclampsia usually occurs after the 20th week of gestation, but may develop before this time in the presence of trophoblastic disease.[accessedResource: MSH:D011225][accessDate: 2009-11-30]
GeneRIF:15866083
SNOMEDCT:398254007
GeneRIF:15775999
GeneRIF:16021077
GeneRIF:14671210
GeneRIF:12908999
GeneRIF:12892901
GeneRIF:12651901
GeneRIF:16091310
NCIt:C34943
GeneRIF:15886253
GeneRIF:12911547
GeneRIF:15097012
GeneRIF:15544427
GeneRIF:15163465
GeneRIF:15901845
DOID:10591
GeneRIF:15140512
GeneRIF:16150277
GeneRIF:15135235
GeneRIF:15695771
GeneRIF:12897464
Pre-eclampsia NOS[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:16182107
Toxaemia of pregnancy[accessedResource: DOID:10591][accessDate: 2009-11-30]
Toxemia of Pregnancy[accessedResource: NCIt:C34943][accessDate: 2009-11-30]
GeneRIF:15817508
Pre-eclamptic NOS[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12757936
Pre-eclampsia NOS (disorder)[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12324185
Toxemia of pregnancy (disorder)[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:14634568
GeneRIF:11969342
GeneRIF:15110896
SNOMEDCT:15394000
GeneRIF:14967168
Pre-Eclampsia[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12867763
GeneRIF:15784708
GeneRIF:11905404
GeneRIF:12654717
GeneRIF:15364897
GeneRIF:12545206
GeneRIF:12104097
SNOMEDCT:237280005
GeneRIF:15974297
GeneRIF:14673478
GeneRIF:16157088
GeneRIF:15081636
GeneRIF:14605992
GeneRIF:12362237
GeneRIF:12634647
GeneRIF:15369653
GeneRIF:15569322
GeneRIF:15472115
GeneRIF:14746952
GeneRIF:15585559
Pre-eclampsia (disorder)[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12044319
GeneRIF:14517225
GeneRIF:12593997
Pre-eclamptic toxaemia[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12727995
GeneRIF:11950065
GeneRIF:12867761
GeneRIF:15501905
GeneRIF:15097234
SNOMEDCT:288201007
Toxaemia NOS[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12163461
GeneRIF:16021053
GeneRIF:14638622
GeneRIF:16059745
GeneRIF:15193868
GeneRIF:14634580
pregnancy toxemia[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:12173035
Toxemia NOS (disorder)[accessedResource: DOID:10591][accessDate: 2009-11-30]
GeneRIF:16036389
GeneRIF:14671202
James Malone
GeneRIF:12699878
GeneRIF:11854637
GeneRIF:15042014
GeneRIF:11969341
MSH:D011225
GeneRIF:15082899
preeclampsia
GeneRIF:12859429
Proteinuric hypertension of pregnancy[accessedResource: DOID:10591][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:14662163
GeneRIF:15085177
GeneRIF:16191421
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158679&type=germplasm
CS57655 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158679&type=germplasm
CS57655
NCI Metathesaurus: C0037658
somatosensory cortex
James Malone
HMEC184
James Malone
PancTUI
James Malone
Ele Holloway
PancTuI
PancTu-I
etanercept
ENBREL
innate behavior design
Tomasz Adamusiak
MO_355
Ara-C-resistant murine leukemia
Tomasz Adamusiak
A base unit which is a standard measure of the amount of matter/energy of a physical object.[accessedResource: UO:0000002][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
A mass unit is a base unit which is a standard measure of the amount of matter/energy of a physical object.
UO:0000002
MO_149
mass unit
MO_11
Jie Zheng
James Malone
subthalamic nucleus
Lens-shaped structure on the inner aspect of the internal capsule. The subthalamic nucleus and pathways traversing this region are concerned with the integration of somatic motor function. (MeSH)[accessedResource: NCIt:C12454][accessDate: 2009-11-30]
A biconvex mass of gray matter on the medial side of the junction of the internal capsule and the crus cerebri; its chief connections are with the globus pallidus.[accessedResource: BTO:0002252][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0002252
NCIt:C12454
sodium {2-[(2,6-dichlorophenyl)amino]phenyl}acetate[accessedResource: CHEBI:4509][accessDate: 2009-11-30]
BioportalImporter v.1.2
An organic sodium salt that has formula C14H10Cl2NNaO2.[accessedResource: CHEBI:4509][accessDate: 2009-11-30]
diclofenac sodium
CHEBI:4509
MHHPREB1
James Malone
Ele Holloway
ZFS:0000032
James Malone
pharyngula high-pec
GeneRIF:15929040
GeneRIF:15920728
GeneRIF:15050683
GeneRIF:15843584
GeneRIF:14975582
GeneRIF:12146799
GeneRIF:11847479
GeneRIF:11721059
GeneRIF:15778395
GeneRIF:14988414
GeneRIF:14662853
GeneRIF:14662901
GeneRIF:15837577
GeneRIF:15100315
GeneRIF:11908949
SNOMEDCT:50776006
GeneRIF:15925413
GeneRIF:15501390
GeneRIF:14766173
GeneRIF:12196270
GeneRIF:16272284
GeneRIF:12387457
EAE[accessedResource: DOID:3046][accessDate: 2009-11-30]
GeneRIF:15265890
experimental autoimmune encephalomyelitis
GeneRIF:15728477
GeneRIF:12538686
GeneRIF:16081797
GeneRIF:12097407
GeneRIF:11985514
GeneRIF:12471147
GeneRIF:16005524
GeneRIF:12925695
GeneRIF:15926914
An experimental animal model for central nervous system demyelinating disease. Inoculation with a white matter emulsion combined with FREUND'S ADJUVANT, myelin basic protein, or purified central myelin triggers a T cell-mediated immune response directed towards central myelin. The pathologic features are similar to MULTIPLE SCLEROSIS, including perivascular and periventricular foci of inflammation and demyelination. Subpial demyelination underlying meningeal infiltrations also occurs, which is also a feature of ENCEPHALOMYELITIS, ACUTE DISSEMINATED. Passive immunization with T-cells from an afflicted animal to a normal animal also induces this condition. (From Immunol Res 1998;17(1-2):217-27; Raine CS, Textbook of Neuropathology, 2nd ed, p604-5)[accessedResource: MSH:D004681][accessDate: 2009-11-30]
GeneRIF:15081250
GeneRIF:11859094
GeneRIF:14644025
GeneRIF:12791309
GeneRIF:12594253
GeneRIF:12799016
GeneRIF:15328042
GeneRIF:14999816
GeneRIF:15494405
SNOMEDCT:27040004
GeneRIF:15843539
GeneRIF:14507666
GeneRIF:12817031
GeneRIF:12613667
DOID:3046
GeneRIF:16172261
BioportalImporter v.1.2
GeneRIF:12429207
GeneRIF:16172262
GeneRIF:15778405
GeneRIF:12115610
Allergic encephalomyelitis (disorder)[accessedResource: DOID:3046][accessDate: 2009-11-30]
GeneRIF:12626533
GeneRIF:16049338
GeneRIF:15835266
GeneRIF:14991835
GeneRIF:12486171
GeneRIF:15390104
GeneRIF:15710471
GeneRIF:14634082
GeneRIF:12819359
MSH:D004681
GeneRIF:16177127
Experimental allergic encephalomyelitis (disorder)[accessedResource: DOID:3046][accessDate: 2009-11-30]
GeneRIF:11932923
GeneRIF:15850576
GeneRIF:12147621
James Malone
GeneRIF:12960295
GeneRIF:15878627
GeneRIF:15383583
GeneRIF:16002731
GeneRIF:12372981
GeneRIF:12207354
GeneRIF:11477542
GeneRIF:15383607
GeneRIF:11908941
GeneRIF:15522913
GeneRIF:14688366
micromolar
James Malone
A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.[accessedResource: UO:0000064][accessDate: 2009-11-30]
µM
UO:0000064
BioportalImporter v.1.2
uM[accessedResource: UO:0000064][accessDate: 2009-11-30]
Tomasz Adamusiak
MO_740
Jie Zheng
James Malone
CFT-2
GeneRIF:12823767
DOID:8986
James Malone
GeneRIF:15985489
narcolepsy
GeneRIF:11796186
GeneRIF:15157381
Narcolepsy NOS[accessedResource: DOID:8986][accessDate: 2009-11-30]
GeneRIF:15091316
MSH:D009290
GeneRIF:15070772
GeneRIF:12535955
GeneRIF:14769912
GeneRIF:12414876
paroxysmal sleep[accessedResource: DOID:8986][accessDate: 2009-11-30]
GeneRIF:12601524
Narcolepsy (disorder)[accessedResource: DOID:8986][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15453542
ICD9:347.0
A condition characterized by recurrent episodes of daytime somnolence and lapses in consciousness (microsomnias) that may be associated with automatic behaviors and AMNESIA. CATAPLEXY; SLEEP PARALYSIS, and hypnagogic HALLUCINATIONS frequently accompany narcolepsy. The pathophysiology of this disorder includes sleep-onset rapid eye movement (REM) sleep, which normally follows stage III or IV sleep. (From Neurology 1998 Feb;50(2 Suppl 1):S2-S7)[accessedResource: MSH:D009290][accessDate: 2009-11-30]
NCIt:C8936
B-precursor acute lymphoblastic leukemia
James Malone
B Lymphoblastic Leukemia/Lymphoma[accessedResource: NCIt:C8936][accessDate: 2009-11-30]
DOID:7061
B-ALL
A neoplasm of lymphoblasts committed to the B-cell lineage, typically composed of small to medium-sized blast cells. When the neoplasm involves predominantly the bone marrow and the peripheral blood, it is called precursor B lymphoblastic leukemia (B-cell acute lymphoblastic leukemia). When it involves nodal or extranodal sites, it is called B lymphoblastic lymphoma. (WHO, 2001) -- 2003[accessedResource: NCIt:C8936][accessDate: 2009-11-30]
Precursor B-Lymphoblastic Lymphoma/Leukemia[accessedResource: NCIt:C8936][accessDate: 2009-11-30]
BioportalImporter v.1.2
B-cell acute lymphoblastic leukemia
CS57548 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158572&type=germplasm
CS57548
http://www.arabidopsis.org/servlets/TairObject?id=1005158572&type=germplasm
James Malone
TIVE
James Malone
Ele Holloway
James Malone
Ele Holloway
T84
B-2 B cell
small pre-BII cell
B-2 B-lymphocyte[accessedResource: CL:0000822][accessDate: 2009-11-30]
BioportalImporter v.1.2
CL:0000822
large pre-BII cell
A conventional B cell subject to antigenic stimulation and dependent on T cell help and with a distinct surface marker expression pattern from B-1 B cells. These cells are CD43-negative.[accessedResource: CL:0000822][accessDate: 2009-11-30]
James Malone
A dermal neurofibroma is a neurofibroma that occurs in situ of the skin.
James Malone
dermal neurofibroma
James Malone
BioportalImporter v.1.2
A drug that has a strengthening effect on the heart or that can increase cardiac output.[accessedResource: CHEBI:38147][accessDate: 2009-11-30]
CHEBI:38147
cardiotonic drug
CHEBI:38147
BioportalImporter v.1.2
CL:0000817
B-cell precursor
James Malone
pre-B cell
pre-BI cell
A precursor B cell is a B cell with the phenotype CD10-positive (P08473/NEP_HUMAN; PIRSF001194).[accessedResource: CL:0000817][accessDate: 2009-11-30]
GeneRIF:15467433
MSH:D009373
GeneRIF:12163388
GeneRIF:16188233
Germ cell neoplasm NOS (morphologic abnormality)[accessedResource: DOID:2994][accessDate: 2009-11-30]
Germ cell neoplasms (morphologic abnormality)[accessedResource: DOID:2994][accessDate: 2009-11-30]
GeneRIF:15491742
Neoplasm of Germ Cell[accessedResource: NCIt:C3708][accessDate: 2009-11-30]
GeneRIF:15896468
Tumor of Germ Cell[accessedResource: NCIt:C3708][accessDate: 2009-11-30]
GeneRIF:12736724
SNOMEDCT:189839002
Germ Cell Neoplasms[accessedResource: NCIt:C3708][accessDate: 2009-11-30]
germ cell tumor
Germ cell neoplasm (morphologic abnormality)[accessedResource: DOID:2994][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:14633588
James Malone
GeneRIF:14555521
GeneRIF:12629412
GeneRIF:12727846
GeneRIF:12824871
GeneRIF:15691383
GeneRIF:15982323
GeneRIF:12777997
Neoplasms composed of primordial GERM CELLS of embryonic GONADS or of elements of the germ layers of the EMBRYO, MAMMALIAN. The concept does not refer to neoplasms located in the gonads or present in an embryo or FETUS.[accessedResource: MSH:D009373][accessDate: 2009-11-30]
Germ cell tumor (disorder)[accessedResource: DOID:2994][accessDate: 2009-11-30]
SNOMEDCT:402878003
Germ cell tumour[accessedResource: DOID:2994][accessDate: 2009-11-30]
SNOMEDCT:28307001
NCIt:C3708
Tumor of the Germ Cell[accessedResource: NCIt:C3708][accessDate: 2009-11-30]
GeneRIF:12620992
Neoplasm of the Germ Cell[accessedResource: NCIt:C3708][accessDate: 2009-11-30]
Germinoma[accessedResource: DOID:2994][accessDate: 2009-11-30]
DOID:2994
Germ Cell Neoplasm[accessedResource: NCIt:C3708][accessDate: 2009-11-30]
SNOMEDCT:115233005
GeneRIF:15330164
SNOMEDCT:189854008
NCIt:C12431
BioportalImporter v.1.2
The tissue occupying the spaces of bone. It consists of blood vessel sinuses and a network of hematopoietic cells which give rise to the red cells, white cells, and megakaryocytes.
[Source: NCI Thesaurus C12431]
true
Reticuloendothelial System, Bone Marrow[accessedResource: NCIt:C12431][accessDate: 2009-11-30]
obsolete_bone marrow
Duplicate term : see bone marrow EFO_0000868
Bone Marrow[accessedResource: NCIt:C12431][accessDate: 2009-11-30]
Panc89
James Malone
Ele Holloway
T3M4
PANC89
James Malone
CS57658 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158682&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158682&type=germplasm
CS57658
James Malone
BioportalImporter v.1.2
A biexponential transformation is a data transformation that, for each (one dimensional) real number input x, outputs an approximation (found, e.g. with the Newton's method) to a solution y of the equation B(y)-x=0, where B denotes a b transformation.[accessedResource: OBI_0200006][accessDate: 2009-11-30]
OBI_0200006
biexponential transformation
GeneRIF:12042273
GeneRIF:12832381
GeneRIF:14556808
SNOMEDCT:396224008
GeneRIF:11870103
GeneRIF:15242994
GeneRIF:11883743
GeneRIF:15640252
GeneRIF:15861041
GeneRIF:15746194
GeneRIF:12012624
GeneRIF:12009356
GeneRIF:15212674
GeneRIF:15705625
GeneRIF:12517591
GeneRIF:14980314
GeneRIF:14644829
GeneRIF:16084889
GeneRIF:15120697
GeneRIF:12062821
GeneRIF:12594002
GeneRIF:15212671
GeneRIF:15950672
SNOMEDCT:198259004
GeneRIF:14989983
GeneRIF:12837926
GeneRIF:15764806
GeneRIF:12571184
SNOMEDCT:129103003
GeneRIF:15083380
GeneRIF:14506926
GeneRIF:14764801
GeneRIF:15193490
GeneRIF:14645176
GeneRIF:12200463
GeneRIF:12372468
GeneRIF:16098858
GeneRIF:16144297
GeneRIF:15613411
GeneRIF:12372460
GeneRIF:15820792
GeneRIF:15665016
GeneRIF:15166131
GeneRIF:12587534
GeneRIF:15749523
GeneRIF:15319381
GeneRIF:15879464
ICD9:617.8
GeneRIF:11716965
GeneRIF:11925378
GeneRIF:16024248
GeneRIF:12699881
GeneRIF:15589849
GeneRIF:15618253
GeneRIF:15588473
DOID:289
GeneRIF:15059587
GeneRIF:15602080
GeneRIF:15866595
GeneRIF:15533352
GeneRIF:12620489
NCIt:C3014
GeneRIF:12571183
GeneRIF:12525458
GeneRIF:15531592
GeneRIF:14505259
James Malone
GeneRIF:15236995
GeneRIF:12034345
GeneRIF:16192641
GeneRIF:12700072
endometriosis
GeneRIF:11756572
GeneRIF:12568865
GeneRIF:12788899
GeneRIF:11994543
GeneRIF:11968047
ICD9:617
GeneRIF:12372466
GeneRIF:12372458
GeneRIF:12529420
GeneRIF:15820794
GeneRIF:15749482
GeneRIF:16084898
GeneRIF:15166129
GeneRIF:12297480
GeneRIF:14967364
GeneRIF:14667896
GeneRIF:15878920
GeneRIF:11963839
GeneRIF:14998974
GeneRIF:15755869
GeneRIF:14667898
GeneRIF:15120698
GeneRIF:15044605
ICD9:617.9
GeneRIF:16210018
GeneRIF:11804955
GeneRIF:15105396
GeneRIF:15979997
GeneRIF:15979990
BioportalImporter v.1.2
GeneRIF:16006475
GeneRIF:15302278
GeneRIF:12773447
GeneRIF:16169423
GeneRIF:15126568
GeneRIF:15734764
GeneRIF:15472211
GeneRIF:12112590
SUM149PT
James Malone
Synovium[accessedResource: NCIt:C12473][accessDate: 2009-11-30]
NCIt:C12473
synovial membrane
James Malone
The inner membrane of a joint capsule surrounding a freely movable joint. It is loosely attached to the external fibrous capsule and secretes synovial fluid. (MeSH)[accessedResource: NCIt:C12473][accessDate: 2009-11-30]
BioportalImporter v.1.2
genotype design
MO_527
Tomasz Adamusiak
A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.[accessedResource: UO:0000065][accessDate: 2009-11-30]
UO:0000065
Jie Zheng
nM[accessedResource: UO:0000065][accessDate: 2009-11-30]
Tomasz Adamusiak
nanomolar
MO_862
BioportalImporter v.1.2
James Malone
James Malone
pharyngula stage
The pharyngula is a developmental stage in embryonic development which follows the blastula, gastrula and neurula stages.
BioportalImporter v.1.2
SNOMEDCT:404069006
SNOMEDCT:27849002
NCIt:C3735
The most common type of liposarcoma. It is composed of round to oval mesenchymal cells, small signet ring lipoblasts, and a rich network of capillaries in a myxoid stroma.
[Source: NCI Thesaurus C3735]
Myxoid liposarcoma (morphologic abnormality)[accessedResource: DOID:5363][accessDate: 2009-11-30]
DOID:5363
myxoid liposarcoma
A liposarcoma containing myxomatous tissue. (Dorland, 27th ed)[accessedResource: MSH:D018208][accessDate: 2009-11-30]
Myxoid liposarcoma (disorder)[accessedResource: DOID:5363][accessDate: 2009-11-30]
MSH:D018208
GeneRIF:12915480
James Malone
CSBwt-rescued fibroblasts
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158573&type=germplasm
James Malone
CS57549 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158573&type=germplasm
CS57549
MIA Paca-2
James Malone
Ele Holloway
James Malone
BTO:0001583
Ele Holloway
T98G
BioportalImporter v.1.2
MCC:0000457
Human, Caucasian, glioblastoma cell line.[accessedResource: BTO:0001583][accessDate: 2009-11-30]
A phthalate ester that has formula C24H38O4.[accessedResource: CHEBI:17747][accessDate: 2009-11-30]
bis(2-ethylhexyl) phthalate[accessedResource: CHEBI:17747][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:17747
diethylhexyl phthalate
James Malone
segmentation 5-9 somites
ZFS:0000024
Tomasz Adamusiak
peripartum cardiomyopathy
SNOMEDCT:62377009
DOID:9997
http://www.arabidopsis.org/servlets/TairObject?id=1005158827&type=germplasm
James Malone
CS57803
CS57803 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158827&type=germplasm
James Malone
insulin
CHEBI:5931
embryonic day 17.5
Tomasz Adamusiak
Jie Zheng
James Malone
gall tissue
MAT:0000351
GeneRIF:15691125
malaria
GeneRIF:15272009
SNOMEDCT:105649009
GeneRIF:12626578
GeneRIF:15322007
SNOMEDCT:186797008
GeneRIF:15931230
GeneRIF:15724813
GeneRIF:14694201
GeneRIF:11668637
GeneRIF:12140747
GeneRIF:12125143
GeneRIF:15634900
GeneRIF:12738632
GeneRIF:12654089
SNOMEDCT:61462000
GeneRIF:15086902
Malaria is a parasitic disease characterized as a vector-borne arthropod infectious acute or chronic disease caused by the presence of sporozoan parasites of the genus Plasmodium in the red blood cells, transmitted from an infected to an uninfected individual by the bite of anopheline mosquitoes, and characterized by periodic attacks of chills and fever that coincide with mass destruction of blood cells and the release of toxic substances by the parasite at the end of each reproductive cycle. Occurrance is widespread in tropical and subtropical regions, including parts of the Americas, Asia, and Africa.[accessedResource: DOID:12365][accessDate: 2009-11-30]
GeneRIF:12574396
ICD9:084.9
GeneRIF:14595440
GeneRIF:15845528
BioportalImporter v.1.2
SNOMEDCT:266121001
GeneRIF:12117997
GeneRIF:15718915
SNOMEDCT:187510004
SNOMEDCT:248437004
GeneRIF:14695625
GeneRIF:12933825
GeneRIF:15853902
GeneRIF:14767829
GeneRIF:12746397
GeneRIF:15478802
GeneRIF:15319871
GeneRIF:12486610
GeneRIF:15500919
James Malone
GeneRIF:11434773
NCIt:C34797
GeneRIF:11971017
ICD9:084
GeneRIF:16113307
DOID:12365
GeneRIF:15933743
GeneRIF:12654091
GeneRIF:15383590
ICD9:084.4
GeneRIF:12402212
ICD9:084.6
GeneRIF:15973412
GeneRIF:12496175
GeneRIF:15211007
This lobe is located at the back of the head and is involved in vision and reading.[accessedResource: BTO:0000293][accessDate: 2009-11-30]
BioportalImporter v.1.2
occipital lobe
Occipital region[accessedResource: FMAID:67325][accessDate: 2009-11-30]
Occipital cortex[accessedResource: FMAID:67325][accessDate: 2009-11-30]
EV:0100170
BTO:0000293
Occipital lobe is the one of five lobes of the cerebral hemisphere which occupies the posterior-most portion of the hemisphere. Anteriorly, it shares an arbitrary border with the parietal lobe and temporal lobe. Medially, it is bounded by the longitudinal cerebral fissure.[accessedResource: FMAID:67325][accessDate: 2009-11-30]
James Malone
MAT:0000507
FMAID:67325
CHEBI:15365
aspirin
2-(acetyloxy)benzoic acid[accessedResource: CHEBI:15365][accessDate: 2009-11-30]
acetylsalicylic acid
BioportalImporter v.1.2
James Malone
Ele Holloway
SNB19
A broad mass of chiefly transverse nerve fibers conspicuous on the ventral surface of the brain of man and lower mammals at the anterior end of the medulla oblongata.[accessedResource: BTO:0001101][accessDate: 2009-11-30]
Pons Cerebelli[accessedResource: NCIt: C12511][accessDate: 2009-11-30]
NCIt: C12511
James Malone
The middle portion of the brainstem located between the midbrain and the medulla oblongata. The fourth ventricle lies dorsal to the pons which also contains the motor trigeminal nuclei and the abducens nuclei. The cerebellum contributes a large number of afferent fibers to the pons.
[Source: NCI Thesaurus C12511]
NIFSTD:birnlex_733
Pons Varolii[accessedResource: NCIt: C12511][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0001101
Tomasz Adamusiak
pons
CS57896
http://www.arabidopsis.org/servlets/TairObject?id=1005158920&type=germplasm
James Malone
CS57896 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158920&type=germplasm
familial amyotrophic lateral sclerosis
James Malone
Familial amyotrophic lateral sclerosis is a amyotrophic lateral sclerosis in which a family history of the disease exists.
CHEBI:2038
5-azacytidine
James Malone
antioxidant
CHEBI:22586
BioportalImporter v.1.2
CHEBI:22586
A substance that opposes oxidation or inhibits reactions brought about by dioxygen or peroxides.[accessedResource: CHEBI:22586][accessDate: 2009-11-30]
diffuse scleroderma
DOID:1580
Systemic sclerosis, diffuse (disorder)[accessedResource: DOID:1580][accessDate: 2009-11-30]
SNOMEDCT:128460000
GeneRIF:16320328
A rapid onset form of SYSTEMIC SCLERODERMA with progressive widespread SKIN thickening over the arms, the legs and the trunk, resulting in stiffness and disability.[accessedResource: MSH:D045743][accessDate: 2009-11-30]
diffuse systemic sclerosis[accessedResource: DOID:1580][accessDate: 2009-11-30]
BioportalImporter v.1.2
MSH:D045743
James Malone
digit
XAO:0003035
James Malone
SAEL:29
hindlimb digit[accessedResource: MAT:0000285][accessDate: 2009-11-30]
BioportalImporter v.1.2
forelimb digit[accessedResource: MAT:0000285][accessDate: 2009-11-30]
XAO:0003036
MAT:0000285
beta cell
BioportalImporter v.1.2
A cell that composes the bulk of the islets of Langerhans and secretes insulin.
[Source: NCI Thesaurus C32199]
beta cell islets
Insulin Secreting Cell[accessedResource: NCIt:C32199][accessDate: 2009-11-30]
James Malone
NCIt:C32199
Insulin Cell[accessedResource: NCIt:C32199][accessDate: 2009-11-30]
James Malone
Ele Holloway
66cl4
TAO:0000632
Reproductive system[accessedResource: FMAID:7160][accessDate: 2009-11-30]
EHDAA:5923
EMAPA:17381
FMAID:7160
FBbt:00004857
Genital system[accessedResource: FMAID:7160][accessDate: 2009-11-30]
XAO:0000142
animal reproductive system
SAEL:89
James Malone
EV:0100100
MAT:0000305
BioportalImporter v.1.2
James Malone
CS57807
CS57807 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158831&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158831&type=germplasm
NCIt:C4756
Vulva Intraepithelial Neoplasia[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
VIN[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
vulvar intraepithelial neoplasia
Intraepithelial Neoplasia of Vulva[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Vulval Intraepithelial Neoplasia[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Dysplasia of the Vulva[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Vulval Dysplasia[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Vulvar Dysplasia[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
BioportalImporter v.1.2
Dysplasia of Vulva[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Tomasz Adamusiak
Vulva Dysplasia[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Intraepithelial Neoplasia of the Vulva[accessedResource: NCIt:C4756][accessDate: 2009-11-30]
Ele Holloway
James Malone
segmentation 1-4 somites
ZFS:0000023
sham therapy[accessedResource: NCIt:C753][accessDate: 2009-11-30]
PLCB[accessedResource: NCIt:C753][accessDate: 2009-11-30]
placebo
NCIt:C753
An inactive substance, treatment or procedure that is intended to provide baseline measurements for the experimental protocol of a clinical trial.[accessedResource: NCIt:C753][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
embryonic day 18
Tomasz Adamusiak
Jie Zheng
James Malone
plant fluid
MAT:0000347
reference sample
James Malone
A control role is borne by a material in a process in which results obtained from an experimental sample and a control sample are compared.
NCIt:C61299
Controlled[accessedResource: NCIt:C61299][accessDate: 2009-11-30]
control
BioportalImporter v.1.2
The act of directing or determining; regulation or maintenance of a function or action; a relation of constraint of one entity (thing or person or group) by another.[accessedResource: NCIt:C61299][accessDate: 2009-11-30]
Controlling[accessedResource: NCIt:C61299][accessDate: 2009-11-30]
Infections or infestations with parasitic organisms. They are often contracted through contact with an intermediate vector, but may occur as the result of direct exposure.[accessedResource: MSH:D010272][accessDate: 2009-11-30]
GeneRIF:15471863
BioportalImporter v.1.2
SNOMEDCT:17322007
MSH:D010272
GeneRIF:11444968
parasitic Infection
James Malone
Parasitic diseases
DOID:1398
GeneRIF:12045244
NCIt:C27864
A successful invasion of a host by an organism that uses the host for food and shelter.
[Source: NCI Thesaurus C27864]
parasitic disease
Parasitic disease NOS
NCIt:C12674
Underarm[accessedResource: NCIt:C12674][accessDate: 2009-11-30]
Armpit[accessedResource: NCIt:C12674][accessDate: 2009-11-30]
axilla
The underside concavity where the arm and the shoulder are joined.
[Source: NCI Thesaurus C12674]
James Malone
BioportalImporter v.1.2
EV:0100166
MAT:0000506
BTO:0001001
FMAID:61826
James Malone
BioportalImporter v.1.2
Parietal region[accessedResource: FMAID:61826][accessDate: 2009-11-30]
Parietal cortex[accessedResource: FMAID:61826][accessDate: 2009-11-30]
Parietal lobe is the one of five lobes of the cerebral hemisphere which occupies the dorsal-posterior portion of the hemisphere. It is bounded by the central sulcus on its anterior border and and by the longitudinal cerebral fissure on its medial border. Posteriorly it shares an arbitrary border with the occipital lobe.[accessedResource: FMAID:61826][accessDate: 2009-11-30]
The upper central lobe of the cerebral hemisphere, separated from the temporal lobe below by the lateral sulcus, but continuous at the posterior end of that sulcus, and separated from the frontal lobe by the central sulcus. Behind, it is continuous with the occipital lobe on the lateral surface, but separated from it by the parietooccipital sulcus on the medial surface.[accessedResource: BTO:0001001][accessDate: 2009-11-30]
parietal lobe
James Malone
Ele Holloway
SNU1
diffuse large B-cell lymphoma
Tomasz Adamusiak
NCIt:C8851
Any of a group of compounds, both naturally occurring and synthetic, that regulate aspects of plant growth (from Greek alphaupsilonxialphanuomega, "to grow").[accessedResource: CHEBI:22676][accessDate: 2009-11-30]
auxin
CHEBI:22676
CHEBI:22676
James Malone
BioportalImporter v.1.2
http://www.arabidopsis.org/servlets/TairObject?id=1005158925&type=germplasm
CS57901 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158925&type=germplasm
James Malone
CS57901
James Malone
Ele Holloway
4T1
antimycin
CHEBI:22584
Sporadic amyotrophic lateral sclerosis is a amyotrophic lateral sclerosis in which there is no known cause, such as no family history.
sporadic amyotrophic lateral sclerosis
James Malone
A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells.[accessedResource: CL:0000333][accessDate: 2009-11-30]
CL:0000333
James Malone
BioportalImporter v.1.2
neural crest cell
obsolete_biomaterial factor
true
redundant use material entity
ZFS:0000004
James Malone
cleavage 8-cell
EV:0100014
EHDAA:6208
James Malone
Upper extremity[accessedResource: FMAID:7183][accessDate: 2009-11-30]
forelimb
SAEL:42
FMAID:7183
MAT:0000394
XAO:0003030
Upper limb[accessedResource: FMAID:7183][accessDate: 2009-11-30]
BTO:0001729
A limb (as an arm, wing, fin, or leg) that is situated anteriorly.[accessedResource: BTO:0001729][accessDate: 2009-11-30]
EMAPA:17412
MA:0000025
Superior member[accessedResource: FMAID:7183][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0000713
A lateral outgrowth from a plant stem that is typically a flattened expanded variably shaped greenish organ, constitutes a unit of the foliage, and functions primarily in food manufacture by photosynthesis.[accessedResource: BTO:0000713][accessDate: 2009-11-30]
James Malone
ZEA:0015031
BioportalImporter v.1.2
MAT:0000234
leaf
PO:0009025
segmentation stage
James Malone
CS57790
CS57790 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158814&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158814&type=germplasm
James Malone
BioportalImporter v.1.2
DOID:3277
Thymic tumor[accessedResource: DOID:3277][accessDate: 2009-11-30]
neoplasm of thymus (disorder)[accessedResource: DOID:3277][accessDate: 2009-11-30]
thymic neoplasm[accessedResource: DOID:3277][accessDate: 2009-11-30]
Tomasz Adamusiak
Ele Holloway
thymus neoplasm
BTO:0001457
BioportalImporter v.1.2
The lateral prominence of the pelvis from the waist to the thigh.[accessedResource: C64193][accessDate: 2009-11-30]
C64193
The laterally projecting region of each side of the lower or posterior part of the mammalian trunk formed by the lateral parts of the pelvis and upper part of the femur together with the fleshy parts covering them.[accessedResource: BTO:0001457][accessDate: 2009-11-30]
hip
James Malone
The hip is an animal body part which is the laterally projecting region of each side of the lower or posterior part of the mammalian trunk formed by the lateral parts of the pelvis and upper part of the femur together with the fleshy parts covering them.
NIFSTD:nlx_anat_20090601
Tomasz Adamusiak
BioportalImporter v.1.2
Front part of the brain; involved in planning, organizing, problem solving, selective attention, personality and a variety of "higher cognitive functions" including behavior and emotions.[accessedResource: BTO:0000484][accessDate: 2009-11-30]
frontal lobe
Frontal cortex[accessedResource: FMAID:61824][accessDate: 2009-11-30]
Frontal lobe is the anterior-most of five lobes of the cerebral hemisphere. It is bounded by the central sulcus on its posterior border and by the longitudinal cerebral fissure on its medial border.[accessedResource: FMAID:61824][accessDate: 2009-11-30]
MAT:0000505
Frontal region[accessedResource: FMAID:61824][accessDate: 2009-11-30]
BTO:0000484
James Malone
FMAID:61824
EV:0100167
NIFSTD:birnlex_928
SNU16
James Malone
Ele Holloway
FMA:62211
Medial geniculate complex[accessedResource: FMA:62211][accessDate: 2009-11-30]
MA:0000870
BioportalImporter v.1.2
James Malone
medial geniculate nucleus
Medial geniculate body[accessedResource: FMA:62211][accessDate: 2009-11-30]
Medial geniculate nuclei[accessedResource: FMA:62211][accessDate: 2009-11-30]
MGN
BioportalImporter v.1.2
James Malone
thigh bone
femur
The upper leg bone positioned between the pelvis and the knee.
[Source: NCI Thesaurus C12717]
NCIt:C12717
Femoral[accessedResource: NCIt:C12717][accessDate: 2009-11-30]
The bone that extends from the pelvis to the knee, being the longest and largest bone in the body; its head articulates with the acetabulum of the hip bone, and distally, the femur, along with the patella and tibia, forms the knee joint.[accessedResource: BTO:0001284][accessDate: 2009-11-30]
BTO:0001284
uninfected
Uninfected class is a disposition in which the bearer is not known to be affected by a disease withtin the context of a study
James Malone
An HIV-like virus that infects monkeys, chimpanzees, and other non-human primates. (AIDS Info HIV Glossary)[accessedResource: NCIt:C14274][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
SIV[accessedResource: NCIt:C14274][accessDate: 2009-11-30]
simian immunodeficiency virus
NCIt:C14274
Drosophila melanogaster
NIFSTD:birnlex_535
NCITaxon:7227
Tomasz Adamusiak
James Malone
http://purl.org/obo/owl/CHEBI#CHEBI_51086
A role played by the molecular entity or part thereof within a chemical context.
CHEBI_51086
chemical role
The role of a chemical to be an anti-inflammatory drug.
Digit[accessedResource: NCIt:C40186][accessDate: 2009-11-30]
true
Duplicated class, use digit EFO_0000881
obsolete_digit
A finger or toe in human beings or corresponding part in other vertebrates.[accessedResource: NCIt:C40186][accessDate: 2009-11-30]
NCIt:C40186
Digital[accessedResource: NCIt:C40186][accessDate: 2009-11-30]
BioportalImporter v.1.2
CS57904 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158928&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158928&type=germplasm
James Malone
CS57904
monocyte-derived intermediate cell
James Malone
MDAMB231
XAO:0000176
MA:0000014
BioportalImporter v.1.2
AAO:0000239
Integumentary system[accessedResource: FMAID:72979][accessDate: 2009-11-30]
WBbt:0005730
FBbt:00004856
EHDAA:6520
TADS:0000108
The taxon-independent term for the outer covering of an organism[accessedResource: MAT:0000033][accessDate: 2009-11-30]
MAT:0000033
integument[accessedResource: MAT:0000033][accessDate: 2009-11-30]
BTO:0000634
A division of the whole organism into specialized systems.[accessedResource: FBbt:00004856][accessDate: 2009-11-30]
FMAID:72979
Something that covers or encloses; especially: an enveloping layer (as a skin, membrane, or husk) of an organism or one of its parts.[accessedResource: BTO:0000634][accessDate: 2009-11-30]
EMAPA:17524
EV:0100151
integumental system
James Malone
nervous system disease
James Malone
NCIt:C2934
SALK_037727
Germplasm:4640315
SALK_037727 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?type=germplasm&id=4640315
James Malone
A biopsy number is an information entity about the numerical label given to a partciular biopsy obtained.
James Malone
biopsy number
ZFS:0000029
pharyngula prim-5
James Malone
hindlimb muscle
James Malone
MA:0000663
AAO:0000222
MP:0005578
teratospermia[accessedResource: MP:0005578][accessDate: 2009-11-30]
presence of structurally anomalous spermatozoa in the semen; malformations include the physical bending of the sperm to produce kinks or bends[accessedResource: MP:0005578][accessDate: 2009-11-30]
teratozoospermia
Tomasz Adamusiak
Ele Holloway
BioportalImporter v.1.2
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158825&type=germplasm
CS57801
CS57801 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158825&type=germplasm
James Malone
Ele Holloway
SNU182
CHEBI:17347
17beta-hydroxyandrost-4-en-3-one[accessedResource: CHEBI:17347][accessDate: 2009-11-30]
testosterone
An androgen that has formula C19H28O2.[accessedResource: CHEBI:17347][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
ZEA:0015180
MAT:0000009
A sending out of new growth or the growth sent out: as a stem or branch with its leaves and appendages especially when not yet mature.[accessedResource: BTO:0001243][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
BTO:0001243
shoot
Groin[accessedResource: NCIt:C12726][accessDate: 2009-11-30]
The lower region of the anterior abdominal wall located laterally to the pubic region.
[Source: NCI Thesaurus C12726]
BioportalImporter v.1.2
inguinal region
NCIt:C12726
James Malone
iliac region
Inguinal[accessedResource: NCIt:C12726][accessDate: 2009-11-30]
BioportalImporter v.1.2
SNOMEDCT:2492009
Nutrition disorder[accessedResource: DOID:374][accessDate: 2009-11-30]
Nutritional disorder (disorder)[accessedResource: DOID:374][accessDate: 2009-11-30]
Disorders caused by nutritional imbalance, either overnutrition or undernutrition.[accessedResource: MSH:D009748][accessDate: 2009-11-30]
James Malone
NCIt:C26836
MSH:D009748
nutritional disorder
DOID:374
disorder of nutrition[accessedResource: DOID:374][accessDate: 2009-11-30]
FMA:72206
medulla of thymus
James Malone
BioportalImporter v.1.2
Thymus medulla[accessedResource: FMA:72206][accessDate: 2009-11-30]
James Malone
CS57644
CS57644 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158668&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158668&type=germplasm
murine neuroblastoma cholinergic cell line
CS57905
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158929&type=germplasm
CS57905 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158929&type=germplasm
monocyte-derived osteoclast
James Malone
SNOMEDCT:197435005
SNOMEDCT:197407006
digestive system disease
SNOMEDCT:197043006
SNOMEDCT:197538005
BioportalImporter v.1.2
SNOMEDCT:197575000
ICD9:569.49
SNOMEDCT:197264003
ICD9:575
DOID:27
ICD9:570-579.99
ICD9:569.4
SNOMEDCT:197569009
SNOMEDCT:197543003
SNOMEDCT:197209006
ICD9:564
ICD9:569
ICD9:520-579.99
ICD9:564.4
ICD9:560-569.99
SNOMEDCT:53619000
CHEBI:22333
Highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning. It could be used as an antineoplastic agent, but it might be very toxic, with carcinogenic, mutagenic, teratogenic, and immunosuppressant actions. It could also be used as a component of poison gases.[accessedResource: CHEBI:22333][accessDate: 2009-11-30]
CHEBI:22333
James Malone
BioportalImporter v.1.2
alkylating agent
XAO:0000012
An enlarged anterior or upper part of the brain; especially: the expanded anterior portion of the brain that in higher mammals overlies the rest of the brain, consists of cerebral hemispheres and connecting structures, and is considered to be the seat of conscious mental processes.[accessedResource: BTO:0000239][accessDate: 2009-11-30]
telencephalon
EHDAA:3496
Tomasz Adamusiak
MAT:0000421
ZFA:0000079
TAO:0000079
EMAPA:16910
BioportalImporter v.1.2
FMAID:6200
NIFSTD:birnlex_1115
BTO:0000239
MFO:0002300
James Malone
MA:0000183
Anatomical structure, which is a subdivision of a cardinal body part; it may exclude bones; is demarcated from other subdivisions of the same cardinal body part by anatomical surfaces or lines or topographical references; together with other contiguous subdivisions of the same cardinal body part, it constitutes a cardinal body part. Examples: thorax, perineum, back of neck, forearm, hand, phalanx, nose, auricle of ear, scrotum.[accessedResource: FMAID:67504][accessDate: 2009-11-30]
body part[accessedResource: MAT:0000293][accessDate: 2009-11-30]
organism subdivision[accessedResource: MAT:0000293][accessDate: 2009-11-30]
BioportalImporter v.1.2
TAO:0001308
MAT:0000293
animal body part
Principal body part subdivision[accessedResource: FMAID:67504][accessDate: 2009-11-30]
FMAID:67504
EV:0100008
James Malone
XAO:0003013
Subdivision of cardinal body part[accessedResource: FMAID:67504][accessDate: 2009-11-30]
James Malone
There is possible overlap here with sample and perhaps should be merged.
biopsy site
The physical site from which tissue has been removed from a living organism. Does not imply any statistical significance, i.e. that it is a statistically representative sample of the whole.
duplication: use EFO_0000945
MA:0000688
BioportalImporter v.1.0
limb skeleton
obsolete_limb bone
MAT:0000151
James Malone
true
1.4
Tomasz Adamusiak
James Malone
NIFSTD:birnlex_695
NIFSTD:birnlex_438
MIAA:0000402
infant
CL:0000540
neuron[accessedResource: CL:0000540][accessDate: 2009-11-30]
obsolete_nerve cell
The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system.[accessedResource: CL:0000540][accessDate: 2009-11-30]
BioportalImporter v.1.2
1.8
Detected as synonym for neuron, deprecated in favour of it.
true
James Malone
James Malone
NCI Metathesaurus
tumour
merged with neoplasm EFO_0000616
An abnormal mass of tissue that results from excessive cell division. Tumors perform no useful body function. They may be benign (not cancerous) or malignant (cancerous).
Breast_Tumor_Luminal
obsolete_tumor
1.8
true
embryonic day 13.5
Tomasz Adamusiak
Jie Zheng
James Malone
BioportalImporter v.1.2
humerus
NCIt:C12731
The upper arm bone between the shoulder and elbow.
[Source: NCI Thesaurus C12731]
ligament
FMA:30319
James Malone
James Malone
true
disease
A disease is a disposition that describes states of disease associated with a particular sample and/or organism.
BTO:0001226
PO:0009010
MAT:0000008
seed
James Malone
ZEA:0015178
A matured ovule containing an embryo and food supply and covered by a seed coat.[accessedResource: BTO:0001226][accessDate: 2009-11-30]
BioportalImporter v.1.2
CS57812
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158836&type=germplasm
CS57812 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158836&type=germplasm
ICD9:530.85
Barretts syndrome[accessedResource: DOID:9206][accessDate: 2009-11-30]
GeneRIF:15810620
GeneRIF:14576477
Barrett esophagus[accessedResource: DOID:9206][accessDate: 2009-11-30]
James Malone
Barrett's esophagus
CLE[accessedResource: DOID:9206][accessDate: 2009-11-30]
Barrett's esophagus (disorder) [Ambiguous][accessedResource: DOID:9206][accessDate: 2009-11-30]
Barrett's esophagus with esophagitis (disorder)[accessedResource: DOID:9206][accessDate: 2009-11-30]
GeneRIF:11857318
GeneRIF:15231484
MSH:D001471
GeneRIF:15824739
GeneRIF:15041721
Barrett's esophagus (disorder)[accessedResource: DOID:9206][accessDate: 2009-11-30]
GeneRIF:16291394
(Ulcerative esophagitis) or (Barrett's esophagus)[accessedResource: DOID:9206][accessDate: 2009-11-30]
A condition with damage to the lining of the lower ESOPHAGUS resulting from chronic acid reflux (ESOPHAGITIS, REFLUX). Through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the INTESTINE or the salmon-pink mucosa of the STOMACH. Barrett's columnar epithelium is a marker for severe reflux and precursor to ADENOCARCINOMA of the esophagus.[accessedResource: MSH:D001471][accessDate: 2009-11-30]
DOID:9206
GeneRIF:15716603
GeneRIF:15878911
Barrett's ulcer of esophagus (disorder)[accessedResource: DOID:9206][accessDate: 2009-11-30]
GeneRIF:15967118
GeneRIF:15013707
GeneRIF:15167938
Barrett's oesophagus[accessedResource: DOID:9206][accessDate: 2009-11-30]
BioportalImporter v.1.2
GM06993
James Malone
GeneRIF:15047814
GeneRIF:15170639
EBV Infection[accessedResource: NCIt:C38759][accessDate: 2009-11-30]
Epstein-Barr virus infection
SNOMEDCT:402121009
NCIt:C38759
GeneRIF:15650182
GeneRIF:12050395
GeneRIF:12163590
Epstein-Barr virus infection (disorder)[accessedResource: DOID:2938][accessDate: 2009-11-30]
GeneRIF:15324931
GeneRIF:14607922
GeneRIF:11979459
BioportalImporter v.1.2
GeneRIF:15808506
James Malone
GeneRIF:15368517
GeneRIF:15929169
GeneRIF:14747531
GeneRIF:12707047
Infection with human herpesvirus 4 (HERPESVIRUS 4, HUMAN); which may facilitate the development of various lymphoproliferative disorders. These include BURKITT LYMPHOMA (African type), INFECTIOUS MONONUCLEOSIS, and oral hairy leukoplakia (LEUKOPLAKIA, HAIRY).[accessedResource: MSH:D020031][accessDate: 2009-11-30]
GeneRIF:14747532
MSH:D020031
DOID:2938
GeneRIF:15356108
GeneRIF:11813981
Ele Holloway
Spinocerebellar ataxia (disorder)[accessedResource: DOID:1441][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
NIFSTD:birnlex_12648
Spinocerebellar Ataxias[accessedResource: DOID:1441][accessDate: 2009-11-30]
DOID:1441
spinocerebellar ataxia
FBbt:00004482
The fused compact cephalic plates that comprise the head, excluding the eyes, antennae and mouthparts.[accessedResource: FBbt:00004482][accessDate: 2009-11-30]
head capsule
James Malone
BioportalImporter v.1.2
metformin
CHEBI:6801
N,N-dimethylimidodicarbonimidic diamide[accessedResource: CHEBI:6801][accessDate: 2009-11-30]
BioportalImporter v.1.2
granulocyte-macrophage progenitor
ZFS:0000006
cleavage 32-cell
James Malone
basal breast tumor is a high grade, triple-negative breast tumor, i.e. they express no estrogen receptor, progesterone receptor nor Her2/neu proteins.
Tomasz Adamusiak
James Malone
wikipedia:http://en.wikipedia.org/wiki/Basal-like_carcinoma
basal-like carcinoma
BioportalImporter v.1.2
diencephalon
EMAPA:16896
James Malone
The posterior subdivision of the forebrain.[accessedResource: BTO:0000342][accessDate: 2009-11-30]
FMAID:62001
MFO:0002280
Mature diencephalon[accessedResource: FMAID:62001][accessDate: 2009-11-30]
Interbrain[accessedResource: FMAID:62001][accessDate: 2009-11-30]
MAT:0000420
Tomasz Adamusiak
ZFA:0000101
Between brain[accessedResource: FMAID:62001][accessDate: 2009-11-30]
NIFSTD:birnlex_1503
XAO:0000013
Organ component of neuraxis that has as its parts the epithalamus, thalamus, hypothalamus, subthalamus. There is only one diencephalon.[accessedResource: FMAID:62001][accessDate: 2009-11-30]
EHDAA:3472
BTO:0000342
TAO:0000101
MA:0000171
CS57908 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158932&type=germplasm
CS57908
http://www.arabidopsis.org/servlets/TairObject?id=1005158932&type=germplasm
James Malone
true
obsolete_MDAMB-157
1.8
duplicate of EFO_0001206
James Malone
GM12750
James Malone
James Malone
BioportalImporter v.1.2
TGMA:0000197
wing
FBbt:00004729
adult metathoracic wing[accessedResource: MAT:0000202][accessDate: 2009-11-30]
adult mesothoracic wing[accessedResource: MAT:0000202][accessDate: 2009-11-30]
TGMA:0000196
A flight organ of the adult external thorax that is derived from a dorsal mesothoracic disc.[accessedResource: FBbt:00004729][accessDate: 2009-11-30]
BTO:0001463
MAT:0000202
In adult pterygotous insects, one of the paired organs of flight occurring on the mesothoracic segment.[accessedResource: TGMA:0000196][accessDate: 2009-11-30]
In adult pterygotous insects, the paired organs of flight occurring on the metathoracic segment. In Diptera, the metathoracic wings are represented by the halteres.[accessedResource: TGMA:0000197][accessDate: 2009-11-30]
1: One of the movable feathered or membranous paired appendages by means of which a bird, bat, or insect is able to fly; also: such an appendage even though rudimentary if possessed by an animal belonging to a group characterized by the power of flight.n2: Any of various anatomical structures especially of a flying fish or flying lemur providing means of limited flight.[accessedResource: BTO:0001463][accessDate: 2009-11-30]
Congestive cardiomyopathy (disorder)[accessedResource: DOID:12930][accessDate: 2009-11-30]
GeneRIF:15833432
GeneRIF:12912811
GeneRIF:11846417
SNOMEDCT:399020009
decreased function of the heart associated with cardiac enlargement and congestive heart failure[accessedResource: MP:0002795][accessDate: 2009-11-30]
primary dilated cardiomyopathy (disorder)[accessedResource: DOID:12930][accessDate: 2009-11-30]
GeneRIF:15601645
BioportalImporter v.1.2
GeneRIF:14625273
MP:0002795
GeneRIF:15735644
GeneRIF:14660611
GeneRIF:15146952
James Malone
GeneRIF:12642359
GeneRIF:12644006
GeneRIF:12197595
congestive cardiomyopathy[accessedResource: MP:0002795][accessDate: 2009-11-30]
GeneRIF:15080529
GeneRIF:11792810
A form of CARDIAC MUSCLE disease that is characterized by ventricular dilation, VENTRICULAR DYSFUNCTION, and HEART FAILURE. Risk factors include SMOKING; ALCOHOL DRINKING; HYPERTENSION; INFECTION; PREGNANCY; and mutations in the LMNA gene encoding LAMIN TYPE A, a NUCLEAR LAMINA protein.[accessedResource: MSH:D002311][accessDate: 2009-11-30]
GeneRIF:11950896
MSH:D002311
GeneRIF:15238456
GeneRIF:15034580
GeneRIF:11984589
GeneRIF:16288714
GeneRIF:12869376
GeneRIF:12177436
GeneRIF:11897440
GeneRIF:15340063
SNOMEDCT:195021004
GeneRIF:12072561
GeneRIF:12628721
Tomasz Adamusiak
HP:0001644
GeneRIF:12163370
GeneRIF:15347805
GeneRIF:15485910
GeneRIF:15763499
GeneRIF:12610310
GeneRIF:11896212
GeneRIF:12359139
dilated cardiomyopathy
GeneRIF:14575316
DOID:12930
GeneRIF:12920582
GeneRIF:12628722
GeneRIF:11972068
GeneRIF:15345656
NCIt:C12774
Pulmonary Trunk[accessedResource: NCIt:C12774][accessDate: 2009-11-30]
pulmonary artery
BioportalImporter v.1.2
An artery arising from the right ventricle of the heart that carries deoxygenated blood to the lungs.
[Source: NCI Thesaurus C12774]
BTO:0000778
James Malone
An artery that conveys venous blood from the heart to the lungs.[accessedResource: BTO:0000778][accessDate: 2009-11-30]
GeneRIF:15793859
GeneRIF:15292938
GeneRIF:15655821
GeneRIF:11987129
GeneRIF:15946916
ICD9:556.9
GeneRIF:12725330
GeneRIF:15007304
GeneRIF:11904678
GeneRIF:12112311
GeneRIF:12139949
MSH:D003093
GeneRIF:12133438
ICD9:556
GeneRIF:12878361
GeneRIF:15188158
GeneRIF:12100519
GeneRIF:15550998
GeneRIF:11956656
GeneRIF:15288468
GeneRIF:12133437
GeneRIF:11953203
GeneRIF:15944317
GeneRIF:12465728
BioportalImporter v.1.2
GeneRIF:14627676
GeneRIF:12572877
GeneRIF:12842452
GeneRIF:16149136
GeneRIF:16015687
GeneRIF:12109441
GeneRIF:12730867
GeneRIF:14597776
GeneRIF:14611908
GeneRIF:15628695
GeneRIF:15973119
GeneRIF:15685540
GeneRIF:14731353
GeneRIF:12486609
GeneRIF:15905704
GeneRIF:12460892
GeneRIF:14617036
GeneRIF:15102868
James Malone
GeneRIF:15188166
GeneRIF:15046221
Ulcerative colitis, unspecified[accessedResource: DOID:8577][accessDate: 2009-11-30]
GeneRIF:12707342
GeneRIF:15052696
GeneRIF:12598727
GeneRIF:11737306
GeneRIF:12011151
GeneRIF:15146247
GeneRIF:11920497
UC - Ulcerative colitis[accessedResource: DOID:8577][accessDate: 2009-11-30]
GeneRIF:15248378
ulcerative colitis
GeneRIF:15935984
GeneRIF:15284119
Inflammation of the COLON that is predominantly confined to the MUCOSA. Its major symptoms include DIARRHEA, rectal BLEEDING, the passage of MUCUS, and ABDOMINAL PAIN.[accessedResource: MSH:D003093][accessDate: 2009-11-30]
DOID:8577
GeneRIF:14525977
GeneRIF:12617879
Ulcerative colitis (disorder)[accessedResource: DOID:8577][accessDate: 2009-11-30]
GeneRIF:12512026
GeneRIF:15755919
GeneRIF:14669348
GeneRIF:16158332
PO:0009013
meristem
BioportalImporter v.1.2
A formative plant tissue usually made up of small cells capable of dividing indefinitely and giving rise to similar cells or to cells that differentiate to produce the definitive tissues and organs.[accessedResource: BTO:0000852][accessDate: 2009-11-30]
MAT:0000006
Undifferentiated plant issue - the botanical equivalent of animal stem cells[accessedResource: MAT:0000006][accessDate: 2009-11-30]
James Malone
Meristem is a plant component consisting of undifferentiated plant issue - the botanical equivalent of animal stem cells.
BTO:0000852
Tomasz Adamusiak
Jie Zheng
embryonic day 14.5
NCIt:C33064
BioportalImporter v.1.2
medial collateral ligament
James Malone
Medial Collateral Ligament of the Knee[accessedResource: NCIt:C33064][accessDate: 2009-11-30]
CS57813 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158837&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158837&type=germplasm
CS57813
James Malone
1.8
James Malone
obsolete_BY4741
true
Duplicate use EFO_0000099
mediastinal lymph node
NCIt:C33073
A lymph node located in the mediastinum. Mediastinal lymph nodes are arranged in three groups, one on the lateral, another on the medial, and a third on the anterior aspect of the vessels; the third group is, however, sometimes absent.[accessedResource: NCIt:C33073][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
James Malone
GM06994
James Malone
PO:0009062
BTO:0001733
BioportalImporter v.1.2
The female reproductive organs of a flower; the pistil or pistils considered as a group.[accessedResource: BTO:0001733][accessDate: 2009-11-30]
gynoecium
Tomasz Adamusiak
Ele Holloway
septic peritonitis
http://en.wikipedia.org/wiki/Peritonitis#Septic_peritonitis
cryptogenic fibrosing alveolitis
IPF[accessedResource: NCIt:C35716][accessDate: 2009-11-30]
idiopathic pulmonary fibrosis
James Malone
BioportalImporter v.1.2
NCIt:C35716
An amphetamine that has formula C10H15N.[accessedResource: CHEBI:6809][accessDate: 2009-11-30]
BioportalImporter v.1.2
(2S)-N-methyl-1-phenylpropan-2-amine[accessedResource: CHEBI:6809][accessDate: 2009-11-30]
CHEBI:6809
methamphetamine
TO:0000542
CL:0000501
granulosa cell
The actions or reactions of an object or organism, usually in relation to the environment or surrounding world of stimuli. E.g. Fixed action pattern courtship behaviour in Drosophila. Forager behaviour in honey bees.
Fixed action pattern courtship behaviour in Drosophila. Forager behaviour in honey bees.
behaviour
I am trying to determine the difference between a process and a behaviour. Is behaviour dancing any different from the process dancing?
James Malone
James Malone
ZFS:0000002
cleavage 2-cell
James Malone
Dorsal thalamus[accessedResource: FMAID:62007][accessDate: 2009-11-30]
SAEL:105
Tomasz Adamusiak
BioportalImporter v.1.2
ZFA:0001215
MA:0000179
thalamus
The largest subdivision of the diencephalon that consists chiefly of an ovoid mass of nuclei in each lateral wall of the third ventricle and functions in the integration of sensory information.[accessedResource: BTO:0001365][accessDate: 2009-11-30]
EV:0100195
BTO:0001365
NIFSTD:birnlex_954
FMAID:62007
EMAPA:17540
TAO:0001215
Dorsal thalamus (Anthoney)[accessedResource: FMAID:62007][accessDate: 2009-11-30]
MAT:0000109
EHDAA:3482
CS57923 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005164919&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005164919&type=germplasm
CS57923
James Malone
MDAMB175VII
James Malone
GM12717
James Malone
balancer organ
MAT:0000203
FBbt:00004783
James Malone
BioportalImporter v.1.2
Paired dorsal 'appendage' of the adult mesothoracic segment. It is a freely movable, capitate stalk. It develops from the dorsal mesothoracic disc. It is used for flight balance.[accessedResource: FBbt:00004783][accessDate: 2009-11-30]
haltere
James Malone
FBbt:00004959
paragonium
male accessory gland
CS57810 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158834&type=germplasm
James Malone
CS57810
http://www.arabidopsis.org/servlets/TairObject?id=1005158834&type=germplasm
mesothelial cell
CL:0000077
James Malone
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158596&type=germplasm
CS57572 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158596&type=germplasm
CS57572
MO_849
transfection
The process of bringing about genetic alteration of any cell or organism by a variety of means including recombinant DNA technology, viruses, chemical mutagens and X-rays.
Tomasz Adamusiak
Jie Zheng
James Malone
James Malone
Ele Holloway
SKOV3
NCIt:C53654
James Malone
BioportalImporter v.1.2
A disease of the heart muscle or myocardium proper whose cause is unknown.[accessedResource: NCIt:C53654][accessDate: 2009-11-30]
idiopathic cardiomyopathy
Tomasz Adamusiak
Ele Holloway
DOID:4887
rotavirus infection
James Malone
BioportalImporter v.1.2
mercury dichloride
CHEBI:31823
A mercury coordination entity that has formula Cl2Hg.[accessedResource: CHEBI:31823][accessDate: 2009-11-30]
mercury(II) chloride[accessedResource: CHEBI:31823][accessDate: 2009-11-30]
mercury(2+) chloride[accessedResource: CHEBI:31823][accessDate: 2009-11-30]
embryonic day 15.5
Tomasz Adamusiak
Jie Zheng
Gingiva[accessedResource: FMA:59762][accessDate: 2009-11-30]
NCIt:C32677
James Malone
The tissue that surrounds the necks of teeth and covers the alveolar parts of the jaws; broadly: the alveolar portion of a jaw with its enveloping soft tissues.[accessedResource: BTO:0000519][accessDate: 2009-11-30]
The soft tissue surrounding the neck of individual teeth as well as covering the alveolar bone. The tissue is fibrous and continuous with the periodontal ligament and mucosal covering.[accessedResource: NCIt:C32677][accessDate: 2009-11-30]
gum
FMA:59762
BioportalImporter v.1.2
BTO:0000519
ZFS:0000026
segmentation 14-19 somites
James Malone
GeneRIF:14671199
Stein-Leventhal Syndrome[accessedResource: NCIt:C26862][accessDate: 2009-11-30]
GeneRIF:15695318
GeneRIF:15926113
Multicystic ovaries[accessedResource: DOID:11612][accessDate: 2009-11-30]
GeneRIF:15588467
GeneRIF:14764797
GeneRIF:15057670
GeneRIF:12857431
GeneRIF:16213847
NCIt:C27086
polycystic ovary syndrome
Polycystic ovaries (disorder)[accessedResource: DOID:11612][accessDate: 2009-11-30]
GeneRIF:15516780
GeneRIF:15862282
GeneRIF:15240646
James Malone
MSH:D011085
GeneRIF:14688155
GeneRIF:16084882
GeneRIF:15533361
GeneRIF:12849814
GeneRIF:15292352
GeneRIF:12050223
GeneRIF:12364442
GeneRIF:12574198
GeneRIF:14669168
polycystic ovary[accessedResource: DOID:11612][accessDate: 2009-11-30]
GeneRIF:15598676
GeneRIF:12161545
GeneRIF:12213887
GeneRIF:14671189
GeneRIF:15653207
GeneRIF:12923129
GeneRIF:15731326
GeneRIF:14671186
GeneRIF:12396555
GeneRIF:12615821
NCIt:C26862
GeneRIF:12857430
GeneRIF:12477518
GeneRIF:14602801
GeneRIF:12679434
GeneRIF:15178661
GeneRIF:14684846
GeneRIF:15985479
GeneRIF:14671196
Polycystic ovaries[accessedResource: DOID:11612][accessDate: 2009-11-30]
GeneRIF:15950665
GeneRIF:12620441
BioportalImporter v.1.2
GeneRIF:15191349
GeneRIF:15233555
GeneRIF:15624269
GeneRIF:12519859
ICD9:256.4
GeneRIF:14561641
GeneRIF:15950642
GeneRIF:15010862
PCOS[accessedResource: DOID:11612][accessDate: 2009-11-30]
GeneRIF:16159937
SNOMEDCT:69878008
GeneRIF:15886251
Stein-Leventhal synd.[accessedResource: DOID:11612][accessDate: 2009-11-30]
GeneRIF:14764802
GeneRIF:15155816
GeneRIF:15374726
GeneRIF:14644808
DOID:11612
GeneRIF:11809921
GeneRIF:15757855
GeneRIF:16030171
A complex disorder characterized by infertility, HIRSUTISM; OBESITY; and various menstrual disturbances such as OLIGOMENORRHEA; AMENORRHEA; ANOVULATION. Polycystic ovary syndrome is usually associated with bilateral enlarged ovaries studded with atretic follicles, not with cysts. The term, polycystic ovary, is misleading.[accessedResource: MSH:D011085][accessDate: 2009-11-30]
GeneRIF:14715867
GeneRIF:16275260
GeneRIF:15333250
GeneRIF:15705377
Polycystic Ovarian Disease[accessedResource: NCIt:C27086][accessDate: 2009-11-30]
GeneRIF:15579759
GeneRIF:15533384
GeneRIF:12727985
GeneRIF:12161543
GeneRIF:12502516
Tomasz Adamusiak
Jie Zheng
James Malone
A treatment applied to a sample where some behaviour is expected as a result e.g. avoidance
avoidance
behavioural stimulus
MO_674
James Malone
cleavage 64-cell
ZFS:0000007
dendritic cell-derived intermediate cell
MDAMB134VI
James Malone
hindlimb
SAEL:49
Lower limb[accessedResource: FMAID:7184][accessDate: 2009-11-30]
Inferior member[accessedResource: FMAID:7184][accessDate: 2009-11-30]
Either of two extremities of four-footed non-primate land animals. It usually consists of a femur, tibia and fibula, tarsals, metatarsals, and toes.[accessedResource: BTO:0002345][accessDate: 2009-11-30]
EMAPA:17458
James Malone
XAO:0003031
BioportalImporter v.1.2
MAT:0000395
EHDAA:6094
Lower extremity[accessedResource: FMAID:7184][accessDate: 2009-11-30]
BTO:0002345
FMAID:7184
MA:0000026
EV:0100015
MSH:D013313
post-traumatic stress disorder
James Malone
Posttraumatic stress disorder (disorder)[accessedResource: DOID:2055][accessDate: 2009-11-30]
Tomasz Adamusiak
traumatic neurosis[accessedResource: DOID:2055][accessDate: 2009-11-30]
DOID:2055
NCIt:C3389
ICD9:309.81
NIFSTD:birnlex_12679
Posttraumatic stress disorder[accessedResource: DOID:2055][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12232785
A class of traumatic stress disorders with symptoms that last more than one month. There are various forms of post-traumatic stress disorder, depending on the time of onset and the duration of these stress symptoms. In the acute form, the duration of the symptoms is between 1 to 3 months. In the chronic form, symptoms last more than 3 months. With delayed onset, symptoms develop more than 6 months after the traumatic event.[accessedResource: MSH:D013313][accessDate: 2009-11-30]
SNOMEDCT:47505003
Posttraumatic stress disorder NOS[accessedResource: DOID:2055][accessDate: 2009-11-30]
phytogenic insecticide
CHEBI:22917
An insecticide compound naturally occurring in plants.[accessedResource: CHEBI:22917][accessDate: 2009-11-30]
CHEBI:22917
James Malone
BioportalImporter v.1.2
CS57924 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005164920&type=germplasm
CS57924
http://www.arabidopsis.org/servlets/TairObject?id=1005164920&type=germplasm
James Malone
CS57811 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158835&type=germplasm
James Malone
CS57811
http://www.arabidopsis.org/servlets/TairObject?id=1005158835&type=germplasm
MO_23
treatment
Tomasz Adamusiak
Jie Zheng
A process in which the act is intended to modify or alter some other material entity,
true
James Malone
Ele Holloway
SKUT1
1: The lower jaw of a vertebrate animal. n2. Either the upper or lower part of the beak in birds.[accessedResource: BTO:0001748][accessDate: 2009-11-30]
mandible
BTO:0001748
lower jaw bone
James Malone
BioportalImporter v.1.2
disease free survival
James Malone
A temporal measurement of the period after successful treatment in which there is no appearance of the symptoms or effects of the disease.
James Malone
BioportalImporter v.1.2
The simplest aliphatic alcohol, comprising a methyl and an alcohol group.[accessedResource: CHEBI:17790][accessDate: 2009-11-30]
CHEBI:17790
methanol
noninvasive prostate duct lesions that affect smaller caliber ducts[accessedResource: MP:0009219][accessDate: 2009-11-30]
A neoplastic proliferation of the epithelial cells that line the acini and the ducts of the prostate gland. The neoplastic epithelial cells are confined within the acini and the ducts and they do not invade the surrounding prostatic stroma. Morphologically, it is classified as low or high grade.[accessedResource: NCIt:C4064][accessDate: 2009-11-30]
prostatic intraepithelial neoplasia[accessedResource: MP:0009219][accessDate: 2009-11-30]
MP:0009219
NCIt:C4064
prostate intraepithelial neoplasia
BioportalImporter v.1.2
PIN[accessedResource: MP:0009219][accessDate: 2009-11-30]
Ele Holloway
PIN - Prostatic Intraepithelial Neoplasia[accessedResource: NCIt:C4064][accessDate: 2009-11-30]
Tomasz Adamusiak
Tomasz Adamusiak
Jie Zheng
embryonic day 16.5
James Malone
BioportalImporter v.1.2
hereditary leiomyomatosis and renal cell cancer
NCIt:C51302
Hereditary Leiomyomatosis and Renal Cell Carcinoma[accessedResource: NCIt:C51302][accessDate: 2009-11-30]
HLRCC[accessedResource: NCIt:C51302][accessDate: 2009-11-30]
ZFS:0000025
James Malone
segmentation 10-13 somites
MSH:D011470
GeneRIF:12111704
BPH[accessedResource: NCIt:C2897][accessDate: 2009-11-30]
Benign Hyperplasia of Prostate[accessedResource: NCIt:C2897][accessDate: 2009-11-30]
GeneRIF:12595443
GeneRIF:15129425
benign prostatic hyperplasia, NOS[accessedResource: DOID:11131][accessDate: 2009-11-30]
James Malone
NCIt:C2897
GeneRIF:14678983
Prostatic hyper -benign[accessedResource: DOID:11131][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12530058
GeneRIF:15314639
SNOMEDCT:367483003
GeneRIF:15599946
ICD9:600.0
benign hypertrophy of prostate NOS[accessedResource: DOID:11131][accessDate: 2009-11-30]
GeneRIF:15515049
Increase in constituent cells in the PROSTATE, leading to enlargement of the organ (hypertrophy) and adverse impact on the lower urinary tract function. This can be caused by increased rate of cell proliferation, reduced rate of cell death, or both.[accessedResource: MSH:D011470][accessDate: 2009-11-30]
GeneRIF:15999119
GeneRIF:15178433
GeneRIF:16114059
GeneRIF:12552318
GeneRIF:15492805
GeneRIF:12111701
SNOMEDCT:266569009
GeneRIF:15611997
GeneRIF:12142541
benign prostatic hyperplasia (disorder)[accessedResource: DOID:11131][accessDate: 2009-11-30]
A non-cancerous nodular enlargement of the prostate gland. It is characterized by the presence of epithelial cell nodules, and stromal nodules containing fibrous and smooth muscle elements. It is the most common urologic disorder in men, causing blockage of urine flow.[accessedResource: NCIt:C2897][accessDate: 2009-11-30]
GeneRIF:14604900
GeneRIF:12399530
Benign Hyperplasia of the Prostate[accessedResource: NCIt:C2897][accessDate: 2009-11-30]
Benign Prostate Hyperplasia[accessedResource: NCIt:C2897][accessDate: 2009-11-30]
GeneRIF:12771801
GeneRIF:11550212
Hypertrophy (benign) of prostate[accessedResource: DOID:11131][accessDate: 2009-11-30]
Enlarged prostate - benign[accessedResource: DOID:11131][accessDate: 2009-11-30]
benign prostatic hyperplasia
GeneRIF:15678497
GeneRIF:12673556
GeneRIF:15621731
GeneRIF:15083213
DOID:11131
benign prostatic hypertrophy[accessedResource: DOID:11131][accessDate: 2009-11-30]
GeneRIF:15136785
GeneRIF:16018939
67NR
James Malone
Ele Holloway
dendritic cell-derived osteoclast
cleavage 4-cell
ZFS:0000003
James Malone
James Malone
BioportalImporter v.1.2
flower bud
A bud that will develop into a flower.[accessedResource: BTO:0000470][accessDate: 2009-11-30]
BTO:0000470
TGMA:0000164
The walking appendages of each segment of the ventral adult external thorax.[accessedResource: FBbt:00004640][accessDate: 2009-11-30]
In animals, one of the paired appendages ordinarily used in locomotion and support. In insects, applied only to the three pairs of thoracic legs; in most insects, composed of the coxa, trochanter, femur, tibia, tarsus and posttarsus.[accessedResource: TGMA:0000164][accessDate: 2009-11-30]
FBbt:00004640
invertebrata limb
MAT:0000095
BioportalImporter v.1.2
invertebrate limb
TADS:0000002
James Malone
GeneRIF:12663624
GeneRIF:12004163
GeneRIF:12021142
GeneRIF:12187923
GeneRIF:14563018
GeneRIF:12351486
Diabetes mellitus characterized by insulin deficiency, sudden onset, severe hyperglycemia, rapid progression to ketoacidosis, and death unless treated with insulin. The disease may occur at any age, but is most common in childhood or adolescence.
[Source: NCI Thesaurus C2986]
GeneRIF:15928253
GeneRIF:11916169
Juvenile Diabetes[accessedResource: NCIt:C2986][accessDate: 2009-11-30]
Insulin Dependent Diabetes Mellitus[accessedResource: NCIt:C2986][accessDate: 2009-11-30]
GeneRIF:12479587
GeneRIF:11286636
GeneRIF:12107733
GeneRIF:12185534
GeneRIF:15208781
GeneRIF:12189440
GeneRIF:15483661
GeneRIF:12221281
Insulin Dependent Diabetes[accessedResource: NCIt:C2986][accessDate: 2009-11-30]
GeneRIF:12200073
GeneRIF:11914751
GeneRIF:11975985
GeneRIF:14614560
GeneRIF:12743700
GeneRIF:12457456
James Malone
ICD9:250.93
GeneRIF:12039523
DOID:9744
GeneRIF:12083814
GeneRIF:15189740
GeneRIF:12153746
GeneRIF:12622777
GeneRIF:14557453
NCIt:C2986
GeneRIF:16054858
SNOMEDCT:46635009
GeneRIF:12878786
ICD9:250.91
GeneRIF:12021143
GeneRIF:14583186
GeneRIF:12874455
type I diabetes mellitus
GeneRIF:11981430
Type 1 Diabetes Mellitus[accessedResource: NCIt:C2986][accessDate: 2009-11-30]
Type I Diabetes[accessedResource: NCIt:C2986][accessDate: 2009-11-30]
GeneRIF:12187924
GeneRIF:12351483
GeneRIF:12021138
GeneRIF:14633852
GeneRIF:11916171
GeneRIF:15950078
GeneRIF:12381897
GeneRIF:12118252
GeneRIF:11845233
GeneRIF:12788886
GeneRIF:15786423
GeneRIF:12951629
GeneRIF:12086959
BioportalImporter v.1.2
Type 1 Diabetes[accessedResource: NCIt:C2986][accessDate: 2009-11-30]
GeneRIF:11466400
GeneRIF:11943852
GeneRIF:12819903
GeneRIF:11841494
GeneRIF:14962949
CS8581 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=4473197&type=germplasm
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=4473197&type=germplasm
CS8581
MDAMB157
MDAMB-157
James Malone
preoptic area
birn_anat:birnlex_1706
Tomasz Adamusiak
Jie Zheng
zeugopod
The middle part of the limb (e.g. between the elbow and wrist)[accessedResource: MAT:0000092][accessDate: 2009-11-30]
MAT:0000092
MA:0002716
James Malone
BioportalImporter v.1.2
CHEBI:32588
James Malone
Ele Holloway
BioportalImporter v.1.2
potassium chloride
An inorganic chloride salt that has formula ClK.[accessedResource: CHEBI:32588][accessDate: 2009-11-30]
NCIH1792
James Malone
Ele Holloway
obsolete_chronic lymphocytic leukemia
true
Duplicate with chronic lymphocytic leukemia (EFO_0000095) use this instead
OntologyMappingImporter following DOID:1040
James Malone
chronic lymphoid leukemia
CLL
CHEBI:50161
BioportalImporter v.1.2
A metallotexaphyrin that has formula C52H72GdN5O14.[accessedResource: CHEBI:50161][accessDate: 2009-11-30]
bis(acetato-kappaO){3,3'-[4,5-diethyl-16,17-bis{2-[2-(2-methoxyethoxy)ethoxy]ethoxy}-10,23-dimethyl-13,20,25,26,27-pentaazapentacyclo[20.2.1.1(3,6).1(8,11).0(14,19)]heptacosa-1,3,5,7,9,11(26),12,14,16,18,20,22(25),23-tridecaene-9,24-diyl-kappa(5)N(13),N(20),N(25),N(26),N(27)]dipropan-1-olato}gadolinium[accessedResource: CHEBI:50161][accessDate: 2009-11-30]
motexafin gadolinium
primary cells
James Malone
Ele Holloway
accelerated neurological senescence
XAO:0000128
TADS:0000172
James Malone
MAT:0000051
BioportalImporter v.1.2
EV:0100070
Organ with organ cavity which is continuous proximally with the esophagus and distally with the small intestine. Examples: There is only one stomach.[accessedResource: FMAID:7148][accessDate: 2009-11-30]
TGMA:0001041
stomach
A dilatation of the alimentary canal of a vertebrate communicating anteriorly with the esophagus and posteriorly with the duodenum.[accessedResource: BTO:0001307][accessDate: 2009-11-30]
MA:00000353
BTO:0001307
EMAPA:17021
A flask-shaped posterior region, which retains the blood meal, and which in culicines is capable of much distension.[accessedResource: TGMA:0001041][accessDate: 2009-11-30]
MFO:0003120
EHDAA:2993
SAEL:102
FMAID:7148
AAO:0000579
Capan1
James Malone
Ele Holloway
James Malone
GM12239
SAEL:71
EMAPA:16469
ZFA:0000396
XAO:0000177
nervous system
The nervous system is essentially a biological information highway, and is responsible for controlling all the biological processes and movement in the body, and can also receive information and interpret it via electrical signals which are used in this nervous system. It consists of the Central Nervous System (CNS), essentially the processing area and the Peripheral Nervous System which detects and sends electrical impulses that are used in the nervous system.[accessedResource: BTO:0001484][accessDate: 2009-11-30]
MAT:0000026
NIFSTD:birnlex_844
FMAID:7157
EHDAA:826
AAO:0000324
BioportalImporter v.1.2
WBbt:0005735
TAO:0000396
EV:0100162
James Malone
Tomasz Adamusiak
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.[accessedResource: FBbt:00005093][accessDate: 2009-11-30]
FBbt:00005093
BTO:0001484
MA:0000016
BioportalImporter v.1.2
liposarcoma
Liposarcoma (morphologic abnormality)[accessedResource: DOID:3382][accessDate: 2009-11-30]
GeneRIF:15149855
SNOMEDCT:49430005
SNOMEDCT:254829001
MSH:D008080
A usually painless malignant tumor that arises from adipose tissue. Microscopically, it may contain a spectrum of neoplastic adipocytes ranging from lipoblasts to pleomorphic malignant adipocytes. Representative morphologic variants include: well differentiated, dedifferentiated, pleomorphic, and myxoid/round cell liposarcoma. The metastatic potential is higher in less differentiated tumors.
[Source: NCI Thesaurus C3194]
DOID:3382
Liposarcoma NOS (morphologic abnormality)[accessedResource: DOID:3382][accessDate: 2009-11-30]
James Malone
A malignant tumor derived from primitive or embryonal lipoblastic cells. It may be composed of well-differentiated fat cells or may be dedifferentiated: myxoid (LIPOSARCOMA, MYXOID), round-celled, or pleomorphic, usually in association with a rich network of capillaries. Recurrences are common and dedifferentiated liposarcomas metastasize to the lungs or serosal surfaces. (From Dorland, 27th ed; Stedman, 25th ed)[accessedResource: MSH:D008080][accessDate: 2009-11-30]
GeneRIF:15201968
GeneRIF:14989736
SNOMEDCT:189777004
Liposarcoma (disorder)[accessedResource: DOID:3382][accessDate: 2009-11-30]
NCIt:C3194
Aeromonas hydrophila infection is a bacterial disease caused by infection from the Aeromonas hydrophila bacteria.
James Malone
NCI Metathesaurus: C0085491
Aeromonas hydrophila infection
1-naphthyl isothiocyanate
James Malone
BioportalImporter v.1.2
1-isothiocyanatonaphthalene[accessedResource: CHEBI:35455][accessDate: 2009-11-30]
CHEBI:35455
Clear cell sarcoma of kidney (morphologic abnormality)[accessedResource: DOID:4880][accessDate: 2009-11-30]
Childhood Kidney Clear Cell Sarcoma[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
James Malone
Renal Clear cell sarcoma[accessedResource: DOID:4880][accessDate: 2009-11-30]
BioportalImporter v.1.2
CCSK[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
clear cell sarcoma of the kidney
DOID:4880
SNOMEDCT:24007003
A rare pediatric sarcoma affecting the kidney. It is characterized by the presence of epithelioid or spindle cells forming cords or nests, separated by fibrovascular septa. This type of sarcoma frequently metastasizes to the bones.
[Source: NCI Thesaurus C4264]
Kidney Clear Cell Sarcoma[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
Childhood Clear Cell Sarcoma of the Kidney[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
NCIt:C4264
Pediatric Renal Clear Cell Sarcoma[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
SNOMEDCT:189813000
Childhood Renal Clear Cell Sarcoma[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
clear cell sarcoma of kidney[accessedResource: DOID:4880][accessDate: 2009-11-30]
Pediatric Kidney Clear Cell Sarcoma[accessedResource: NCIt:C4264][accessDate: 2009-11-30]
Mouth[accessedResource: NCIt:C12421][accessDate: 2009-11-30]
Head and Neck, Buccal Cavity[accessedResource: NCIt:C12421][accessDate: 2009-11-30]
Synonym with mouth, use mouth instead see: EFO_0000825
Cavity of mouth[accessedResource: FMA:20292][accessDate: 2009-11-30]
FMA:20292
NCIt:C12421
BioportalImporter v.1.2
obsolete_oral cavity
The cavity located at the upper end of the alimentary canal, behind the teeth and gums that is bounded on the outside by the lips, above by the hard and soft palates and below by the tongue.[accessedResource: NCIt:C12421][accessDate: 2009-11-30]
Orally[accessedResource: NCIt:C12421][accessDate: 2009-11-30]
true
1.8
James Malone
Oral[accessedResource: NCIt:C12421][accessDate: 2009-11-30]
Buccal Cavity[accessedResource: NCIt:C12421][accessDate: 2009-11-30]
embryonic day 8.25
Tomasz Adamusiak
Jie Zheng
HMEC
James Malone
NCIt:C15407
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
family based study
family study [accessedResource: NCI Thesaurus:C15407][accessDate: 2009-09-24]
NCIt:C37364
BTBR mouse
BTBR[accessedResource: NCIt:C37364][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
BioportalImporter v.1.2
autopod
The generic name for hand, paw, foot etc[accessedResource: MAT:0000091][accessDate: 2009-11-30]
MA:0002714
paw
EV:0100452
Tomasz Adamusiak
MAT:0000091
SAEL:45
hand
James Malone
foot
SAEL:41
NIFSTD:nlx_anat_20090603
A phenol that has formula C6H6O.[accessedResource: CHEBI:15882][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
phenol
CHEBI:15882
NCIH1770
James Malone
Ele Holloway
true
obsolete_CTL sensitivity
Heterogeneous cluster that connects the pharynx to the tracheobronchial tree. Examples: There is only one larynx.[accessedResource: FMAID:55097][accessDate: 2009-11-30]
James Malone
EMAPA:18333
FMAID:55097
The modified upper part of the trachea of air-breathing vertebrates that in humans, most other mammals, and a few lower forms contains the vocal cords.[accessedResource: BTO:0001208][accessDate: 2009-11-30]
SAEL:59
larynx
BTO:0001208
BioportalImporter v.1.2
MA:0000414
MAT:0000187
EV:0100039
AAO:0000268
mono-2-ethylhexyl phthalate
A phthalate ester that has formula C16H22O4.[accessedResource: CHEBI:17243][accessDate: 2009-11-30]
CHEBI:17243
2-(2-ethylhexyloxycarbonyl)benzoic acid[accessedResource: CHEBI:17243][accessDate: 2009-11-30]
BioportalImporter v.1.2
Calu6
James Malone
Ele Holloway
James Malone
Senile hyperkeratosis[accessedResource: DOID:8866][accessDate: 2009-11-30]
actinic keratosis
Ele Holloway
DOID:8866
Actinic keratosis (disorder)[accessedResource: DOID:8866][accessDate: 2009-11-30]
BioportalImporter v.1.2
Actinic (Solar) Keratosis[accessedResource: DOID:8866][accessDate: 2009-11-30]
SK - Solar keratosis[accessedResource: DOID:8866][accessDate: 2009-11-30]
Solar keratosis[accessedResource: DOID:8866][accessDate: 2009-11-30]
Actinic keratosis (morphologic abnormality)[accessedResource: DOID:8866][accessDate: 2009-11-30]
GM12248
James Malone
NCI Metathesaurus: C0483368
MedlinePlus: 001381
human granulocytic anaplasmosis
Human granulocytic ehrlichiosis
James Malone
Tomasz Adamusiak
Jie Zheng
James Malone
light
The photoperiod and type (e.g., natural, restricted wavelength) of light exposure.
MO_60
James Malone
MAT:0000025
AAO:0000307
MA:0000015
TAO:0000548
MFO:0002100
ZFA:0000548
muscular system
BioportalImporter v.1.2
BTO:0001485
TADS:0000324
EV:0100146
WBbt:0005737
FBbt:00005069
The bodily system that is composed of skeletal, smooth, and cardiac muscle tissue and functions in movement of the body or of materials through the body, maintenance of posture, and heat production.[accessedResource: BTO:0001485][accessDate: 2009-11-30]
muscule system
muscle system[accessedResource: MAT:0000025][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
NCIt:C12760
A portion of the retina at which the axons of the ganglion cells exit the eyeball to form the optic nerve. No light-sensitive photoreceptors are contained within this portion of the retina.[accessedResource: NCIt:C12760][accessDate: 2009-11-30]
optic disc
Optic Papilla[accessedResource: NCIt:C12760][accessDate: 2009-11-30]
FMA:58634
Optic Nerve Head[accessedResource: NCIt:C12760][accessDate: 2009-11-30]
Optic Disk[accessedResource: NCIt:C12760][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
gastrula 80%-epiboly
true
James Malone
Redundant
A clincal factors is a biomaterial factor that concerns the observation, treatment or measurement of disease within subjects.
obsolete_clinical factor
James Malone
HMEC S1
4-chloro-5-(methylamino)-2-[3-(trifluoromethyl)phenyl]pyridazin-3(2H)-one[accessedResource: CHEBI:50842][accessDate: 2009-11-30]
norflurazon
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:50842
A pyridazinone that has formula C12H9ClF3N3O.[accessedResource: CHEBI:50842][accessDate: 2009-11-30]
James Malone
EMAPA:16405
XAO:0003027
Cardinal body part, which consists of a maximal set of diverse subclasses of organ and organ part spatially associated with a complete set of bones of the appendicular skeleton, it is partially surrounded by skin of limb. Examples: There are only four instances, right upper and lower limbs and left upper and lower limbs.[accessedResource: FMAID:7182][accessDate: 2009-11-30]
vertebrata limb
EHDAA:1697
MA:0000007
vertebrate limb
FMAID:7182
EV:0100483
Limb[accessedResource: FMAID:7182][accessDate: 2009-11-30]
MAT:0000090
Extremity[accessedResource: FMAID:7182][accessDate: 2009-11-30]
BioportalImporter v.1.2
cross sectional study
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
NCIt:C53310
cerebral hemisphere
Either of the two hollow convoluted lateral halves of the cerebrum.[accessedResource: BTO:0000231][accessDate: 2009-11-30]
Ele Holloway
BTO:0000231
James Malone
BioportalImporter v.1.2
GM12249
James Malone
James Malone
Ele Holloway
acute hypotension
James Malone
Ele Holloway
ChaGoK1
James Malone
Ele Holloway
NCIH1838
methyl methanesulfonate
BioportalImporter v.1.2
CHEBI:25255
A methanesulfonate ester that has formula C2H6O3S.[accessedResource: CHEBI:25255][accessDate: 2009-11-30]
AAO:0000145
TADS:0000057
ZFA:0000204
EV:0100069
Gullet[accessedResource: FMAID:7131][accessDate: 2009-11-30]
EHDAA:2937
James Malone
The part of the stomodeum following the pharynx.[accessedResource: TGMA:0000134][accessDate: 2009-11-30]
FBbt:00005381
FMAID:7131
MAT:0000048
esophagus[accessedResource: FBbt:00005381][accessDate: 2009-11-30]
TAO:0000204
A muscular tube that in humans is about nine inches (23 centimeters) long and passes from the pharynx down the neck between the trachea and the spinal column and behind the left bronchus where it pierces the diaphragm slightly to the left of the middle line and joins the cardiac end of the stomach.[accessedResource: BTO:0000959][accessDate: 2009-11-30]
XAO:0000127
Organ with organ cavity which is continuous superiorly with the pharynx and inferiorly with the stomach. Examples: There is only one esophagus.[accessedResource: FMAID:7131][accessDate: 2009-11-30]
MFO:0003000
BTO:0000959
oesophagus
EMAPA:16833
TGMA:0000134
SAEL:74
BioportalImporter v.1.2
An estradiol that has formula C18H24O2.[accessedResource: CHEBI:17160][accessDate: 2009-11-30]
CHEBI:17160
17alpha-estradiol
estra-1,3,5(10)-triene-3,17alpha-diol[accessedResource: CHEBI:17160][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
ZEA:0015175
MAT:0000004
BioportalImporter v.1.2
The individual or generation of a plant exhibiting alternation of generations that bears sex organs.[accessedResource: BTO:0000495][accessDate: 2009-11-30]
PO:0009004
gametophyte
BTO:0000495
GeneRIF:15680239
GeneRIF:15478069
GeneRIF:12825894
GeneRIF:15599404
ICD9:017.92
BioportalImporter v.1.2
GeneRIF:15498158
GeneRIF:14568951
ICD9:017.93
SNOMEDCT:186275005
GeneRIF:16177361
GeneRIF:16224188
GeneRIF:12496428
GeneRIF:12753505
GeneRIF:16002675
GeneRIF:12934195
TB[accessedResource: NCIt:C3423][accessDate: 2009-11-30]
SNOMEDCT:371569005
SNOMEDCT:56717001
SNOMEDCT:187292005
GeneRIF:11907104
GeneRIF:12368450
GeneRIF:15649891
GeneRIF:15804490
GeneRIF:15879133
GeneRIF:12296850
GeneRIF:12942785
NCIt:C3423
GeneRIF:12751024
GeneRIF:12596048
GeneRIF:15695641
GeneRIF:14551880
GeneRIF:15863395
GeneRIF:16077122
GeneRIF:15686559
SNOMEDCT:186274009
ICD9:010-018.99
GeneRIF:12117995
SNOMEDCT:186247008
ICD9:017.96
GeneRIF:12218133
GeneRIF:16103355
GeneRIF:15385470
GeneRIF:12195379
GeneRIF:12234259
GeneRIF:12391840
GeneRIF:12391841
GeneRIF:15061663
GeneRIF:15187146
GeneRIF:14979495
GeneRIF:15322009
GeneRIF:16267303
GeneRIF:12531774
GeneRIF:15879136
GeneRIF:15866927
ICD9:017.9
GeneRIF:15295696
GeneRIF:15050961
GeneRIF:16136464
GeneRIF:15039368
DOID:399
GeneRIF:15993364
GeneRIF:15860225
James Malone
GeneRIF:12714269
GeneRIF:12516771
A chronic, recurrent infection caused by the bacterium Mycobacterium tuberculosis. Tuberculosis (TB) may affect almost any tissue or organ of the body with the lungs being the most common site of infection. The clinical stages of TB are primary or initial infection, latent or dormant infection, and recrudescent or adult-type TB. Ninety to 95% of primary TB infections may go unrecognized. Histopathologically, tissue lesions consist of granulomas which usually undergo central caseation necrosis. Local symptoms of TB vary according to the part affected; acute symptoms include hectic fever, sweats, and emaciation; serious complications include granulomatous erosion of pulmonary bronchi associated with hemoptysis. If untreated, progressive TB may be associated with a high degree of mortality. This infection is frequently observed in immunocompromised individuals with AIDS or a history of illicit IV drug use. --2004[accessedResource: NCIt:C3423][accessDate: 2009-11-30]
GeneRIF:15138193
ICD9:017.90
GeneRIF:12244136
GeneRIF:15500449
ICD9:017.91
GeneRIF:12068984
GeneRIF:14500465
ICD9:017.94
ICD9:017.95
GeneRIF:15774900
SNOMEDCT:186271001
GeneRIF:12075004
GeneRIF:11791667
SNOMEDCT:373576009
SNOMEDCT:186282009
ICD9:017
GeneRIF:15882420
GeneRIF:12960337
GeneRIF:12646604
tuberculosis
GeneRIF:11801672
GeneRIF:12077261
TAO:0000036
BioportalImporter v.1.0
MA:0000324
EHDAA:2189
EV:0100088
EMAPA:16840
MAT:0000024
ZFA:0000036
James Malone
XAO:0000132
liver and biliary system
Is an information entity about the material's (i.e., the patient's) medical record as background information relevant to the experiment.
MO_189
clinical history
Tomasz Adamusiak
Jie Zheng
James Malone
embryonic day 12.5
Tomasz Adamusiak
Jie Zheng
XAO:0003196
FMA:7190
TAO:0001149
olfactory system
BioportalImporter v.1.2
MA:0002445
ZFA:0001149
chemosensory sensory organ[accessedResource: MAT:0000139][accessDate: 2009-11-30]
James Malone
embryonic cuprophilic cell
FBbt:00005625
Jie Zheng
Tomasz Adamusiak
James Malone
The stage or progression of a disease in an organism. Includes pathological staging of cancers and other disease progression. E.g. Dukes C stage describing colon cancer
disease staging
Dukes C stage describing colon cancer
MO_792
GM12716
James Malone
A pyrrolidine alkaloid that has formula C10H14N2.[accessedResource: CHEBI:18723][accessDate: 2009-11-30]
3-(1-methylpyrrolidin-2-yl)pyridine[accessedResource: CHEBI:18723][accessDate: 2009-11-30]
CHEBI:18723
nicotine
James Malone
Ele Holloway
BioportalImporter v.1.2
case control study
NCIt:C15197
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
ZFA:0000108
XAO:0000002
MAT:0000087
OntologyMappingImporter following MAT:0000087
fin
MFO:0079180
TAO:0000108
James Malone
aggressive insulitis
James Malone
Ele Holloway
Capan2
James Malone
Ele Holloway
James Malone
Ele Holloway
neurointermediate lobe
NCIH1793
James Malone
Ele Holloway
EHDAA:2947
MA:0000432
WBbt:0003681
James Malone
TGMA:0000132
EMAPA:16706
SAEL:82
FMAID:46688
MAT:0000049
pharynx
The part of the stomodeum between the mouth and the oesophagus.[accessedResource: TGMA:0000132][accessDate: 2009-11-30]
FBbt:00005380
TAO:0000056
TADS:0000042
The part of the vertebrate alimentary canal between the cavity of the mouth and the esophagus.nThe pharynx of Nematodes is an efficient pump and forces food into the intestines.[accessedResource: BTO:0001049][accessDate: 2009-11-30]
MFO:0003080
BioportalImporter v.1.2
EV:0100065
BTO:0001049
A pteridine that has formula C20H22N8O5.[accessedResource: CHEBI:44185][accessDate: 2009-11-30]
N-(4-{[(2,4-diaminopteridin-6-yl)methyl](methyl)amino}benzoyl)-L-glutamic acid[accessedResource: CHEBI:44185][accessDate: 2009-11-30]
methotrexate
James Malone
BioportalImporter v.1.2
CHEBI:44185
CHEBI:16469
estra-1,3,5(10)-triene-3,17beta-diol[accessedResource: CHEBI:16469][accessDate: 2009-11-30]
BioportalImporter v.1.2
An estradiol that has formula C18H24O2.[accessedResource: CHEBI:16469][accessDate: 2009-11-30]
17beta-estradiol
BTO:0001188
MAT:0000005
The usually underground part of a seed plant body that originates usually from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support, and differs from a stem especially in lacking nodes, buds, and leaves.[accessedResource: BTO:0001188][accessDate: 2009-11-30]
PO:0009005
root
BioportalImporter v.1.2
James Malone
ZEA:0015034
James Malone
Whipple's disease
Intestinal lipodystrophy[accessedResource: DOID:8476][accessDate: 2009-11-30]
ICD9:040.2
whipple disease[accessedResource: DOID:8476][accessDate: 2009-11-30]
DOID:8476
BioportalImporter v.1.2
Whipple's disease (disorder)[accessedResource: DOID:8476][accessDate: 2009-11-30]
A chronic systemic infection by a gram-positive bacterium, Tropheryma whippelii, mainly affecting the SMALL INTESTINE but also the JOINTS; CARDIOVASCULAR SYSTEM; and the CENTRAL NERVOUS SYSTEM. The disease is characterized by fat deposits in the INTESTINAL MUCOSA and LYMPH NODES, malabsorption, DIARRHEA with fatty stools, MALNUTRITION, and ARTHRITIS.[accessedResource: MSH:D008061][accessDate: 2009-11-30]
MSH:D008061
SNOMEDCT:41545003
embryonic day 11.5
Tomasz Adamusiak
Jie Zheng
true
obsolete_clinical history age
The time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage.
Pseudostratified epithelium lining the olfactory region of the nasal cavity, and containing the receptors for the sense of smell.[accessedResource: BTO:0000108][accessDate: 2009-11-30]
NCIt:C33203
BTO:0000108
James Malone
BioportalImporter v.1.2
An epithelium located in the roof, superior conchae, and septum of the nasal cavity. It is formed by ciliated olfactory receptor cells, supporting cells and basal cells. Olfactory glands in the epithelium produce and secrete mucus which forms a layer over the epithelium. The cilia of the receptor cells protrude into the mucous layer where molecular reception with odors occurs and sensory transduction begins.[accessedResource: NCIt:C33203][accessDate: 2009-11-30]
olfactory epithelium
FMA:64803
Sensory olfactory epithelium[accessedResource: FMA:64803][accessDate: 2009-11-30]
GM12155
James Malone
Ele Holloway
Pituitary adenoma (disorder)[accessedResource: DOID:3829][accessDate: 2009-11-30]
pituitary adenoma
DOID:3829
BioportalImporter v.1.2
Tomasz Adamusiak
Adenoma of the Pituitary Gland[accessedResource: DOID:3829][accessDate: 2009-11-30]
Pituitary adenoma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:3829][accessDate: 2009-11-30]
Lewis
James Malone
RGD:737932
skeleton component[accessedResource: MAT:0000032][accessDate: 2009-11-30]
James Malone
skeleton
Set of bones of body[accessedResource: FMAID:23875][accessDate: 2009-11-30]
MA:0000018
FMAID:23875
EMAPA:17213
EHDAA:5047
MAT:0000032
Set of bones in the entire body.[accessedResource: FMAID:23875][accessDate: 2009-11-30]
skeletal system
ZFA:0000434
Set of all bones[accessedResource: FMAID:23875][accessDate: 2009-11-30]
TAO:0000434
BioportalImporter v.1.2
DOID:3078
anaplastic astrocytoma
James Malone
Ele Holloway
BioportalImporter v.1.2
grade III Astrocytic tumor[accessedResource: DOID:3078][accessDate: 2009-11-30]
Astrocytoma, anaplastic (morphologic abnormality)[accessedResource: DOID:3078][accessDate: 2009-11-30]
ethnicity
http://en.wikipedia.org/wiki/Ethnic_group
NIFSTD:birnlex_3016
An ethnic group is a population whose members have a common heritage that is real or presumed such as common culture, language, religion, behaviour or biological trait.
ethnic group
Tomasz Adamusiak
James Malone
NCIH82
James Malone
Ele Holloway
PERSON: James Malone
study design
James Malone
A study type is an experimental factor describing the method of investigating particular types of research questions or solving particular types of problems.
twin study
BioportalImporter v.1.2
N-methyl-N-nitrosomethanamine[accessedResource: CHEBI:35807][accessDate: 2009-11-30]
N-nitrosodimethylamine
CHEBI:35807
A nitrosamine that has formula C2H6N2O.[accessedResource: CHEBI:35807][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
true
Jie Zheng
1.6
Acute Lymphocytic Leukemia
Duplicate with 'disease factor' EFO_0000408.
obsolete_disease state
The name of the pathology diagnosed in the organism from which the biomaterial was derived. The disease state is normal if no disease has been diagnosed. E.g Acute Lymphocytic Leukemia
MO_787
embryonic dorsal epidermis
FBbt:00005744
James Malone
DOID:9805
James Malone
BioportalImporter v.1.2
SNOMEDCT:16814004
Pneumococcal infectious disease (disorder)[accessedResource: DOID:9805][accessDate: 2009-11-30]
Infections with bacteria of the species STREPTOCOCCUS PNEUMONIAE.[accessedResource: MSH:D011008][accessDate: 2009-11-30]
MSH:D011008
GeneRIF:12569171
pneumococcal infection
BioportalImporter v.1.2
CHEBI:18145
(+)-alpha-tocopherol
James Malone
An alpha-tocopherol that has formula C29H50O2.[accessedResource: CHEBI:18145][accessDate: 2009-11-30]
(2R)-2,5,7,8-tetramethyl-2-[(4R,8R)-4,8,12-trimethyltridecyl]-3,4-dihydro-2H-chromen-6-ol[accessedResource: CHEBI:18145][accessDate: 2009-11-30]
true
obsolete_clinical information
NIFSTD:birnlex_1710
EHDAA:5433
FMAID:62009
The caudal part of the roof and the adjoining lateral walls of the third ventricle of the diencephalon, comprising the habenular nuclei and their commissure, pineal body, and commissure of the epithalamus.[accessedResource: BTO:0000175][accessDate: 2009-11-30]
epithalamus
Tomasz Adamusiak
MFO:0079980
ZFA:0000509
TAO:0000509
MA:0000172
BTO:0000175
James Malone
EMAPA:17532
BioportalImporter v.1.2
MAT:0000422
MA:0000925
Nucleus of stria terminalis[accessedResource: FMA:61884][accessDate: 2009-11-30]
FMA:61884
Bed nucleus of stria terminalis[accessedResource: FMA:61884][accessDate: 2009-11-30]
Nuclei of stria terminalis[accessedResource: FMA:61884][accessDate: 2009-11-30]
nucleus of terminal stria
Intercalate nucleus of stria terminalis[accessedResource: FMA:61884][accessDate: 2009-11-30]
Stria terminalis nucleus[accessedResource: FMA:61884][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12138900
SNOMEDCT:188761009
GeneRIF:15223639
GeneRIF:11856346
GeneRIF:12646947
GeneRIF:15723065
Leukemias, General[accessedResource: NCIt:C3161][accessDate: 2009-11-30]
GeneRIF:15515013
GeneRIF:12411326
SNOMEDCT:188766004
ICD9:208.8
GeneRIF:12586625
GeneRIF:15645140
GeneRIF:14704031
GeneRIF:11922610
SNOMEDCT:190162005
GeneRIF:15070702
GeneRIF:12384147
DOID:1240
ICD9:208.80
GeneRIF:12145702
A malignant (clonal) hematologic disorder, involving hematopoietic stem cells and characterized by the presence of primitive or atypical myeloid or lymphoid cells in the bone marrow and the blood. Leukemias are classified as acute or chronic based on the degree of cellular differentiation and the predominant cell type present. Leukemia is usually associated with anemia, fever, hemorrhagic episodes, and splenomegaly. Common leukemias include acute myeloid leukemia, chronic myelogenous leukemia, acute lymphoblastic or precursor lymphoblastic leukemia, and chronic lymphocytic leukemia. Treatment is vital to patient survival; untreated, the natural course of acute leukemias is normally measured in weeks or months, while that of chronic leukemias is more often measured in months or years.
[Source: NCI Thesaurus C3161]
leukemia
GeneRIF:12515866
GeneRIF:11937542
GeneRIF:12773566
GeneRIF:14757439
ICD9:207.81
GeneRIF:15351976
SNOMEDCT:188751002
GeneRIF:12217801
ICD9:208
GeneRIF:12393620
GeneRIF:12454742
GeneRIF:14662771
GeneRIF:11999556
ICD9:208.81
GeneRIF:15744340
GeneRIF:12002748
GeneRIF:15541480
BioportalImporter v.1.2
GeneRIF:12533044
GeneRIF:15856017
GeneRIF:11929767
GeneRIF:12414343
SNOMEDCT:190161003
GeneRIF:11979742
GeneRIF:15475071
GeneRIF:15604256
GeneRIF:12139489
GeneRIF:12648450
GeneRIF:11823049
GeneRIF:15545599
GeneRIF:15585652
GeneRIF:15834506
GeneRIF:11489963
GeneRIF:15705792
James Malone
GeneRIF:12700665
SNOMEDCT:190029004
GeneRIF:12008082
GeneRIF:15735695
GeneRIF:14521941
GeneRIF:15454492
GeneRIF:12682649
GeneRIF:15073036
GeneRIF:12239152
GeneRIF:10437917
GeneRIF:11893077
ICD9:207.8
GeneRIF:15304397
Leukemias[accessedResource: NCIt:C3161][accessDate: 2009-11-30]
GeneRIF:14726393
GeneRIF:15298960
GeneRIF:14990976
GeneRIF:11986949
GeneRIF:12186695
GeneRIF:12002276
GeneRIF:11996108
GeneRIF:14630792
GeneRIF:14996839
GeneRIF:15815718
GeneRIF:16130282
GeneRIF:12700639
GeneRIF:15026336
GeneRIF:14689061
GeneRIF:15756419
ICD9:207.80
GeneRIF:15199122
ICD9:207
GeneRIF:15687235
GeneRIF:12096925
GeneRIF:12208881
GeneRIF:15193261
GeneRIF:12816872
GeneRIF:12901974
GeneRIF:14607752
GeneRIF:15187020
GeneRIF:11792409
GeneRIF:15833859
GeneRIF:15183893
GeneRIF:16081688
GeneRIF:15723338
GeneRIF:12145704
GeneRIF:15895983
This is potentially too broad as well as overlaps with lymphoma and should be obsoleted.
SNOMEDCT:87163000
GeneRIF:12225794
SNOMEDCT:188767008
GeneRIF:15845894
GeneRIF:15856008
GeneRIF:12799277
GeneRIF:12705477
GeneRIF:14691303
GeneRIF:12722639
GeneRIF:15512811
GeneRIF:16002684
GeneRIF:15298716
GeneRIF:12688322
GeneRIF:14519654
GeneRIF:15004329
GeneRIF:14512321
GeneRIF:12082639
GeneRIF:15583855
GeneRIF:12592353
GeneRIF:14615372
GeneRIF:11869944
GeneRIF:16109713
GeneRIF:15475073
GeneRIF:12665591
GeneRIF:12496475
GeneRIF:16103065
GeneRIF:16271957
GeneRIF:12506112
GeneRIF:16088313
GeneRIF:11042511
GeneRIF:14578205
GeneRIF:11999550
GeneRIF:15676214
GeneRIF:15325703
GeneRIF:15144712
GeneRIF:12091340
GeneRIF:14988155
GeneRIF:11764099
GeneRIF:15611294
GeneRIF:15516987
ICD9:208.90
GeneRIF:15964800
GeneRIF:15068389
GeneRIF:12127563
GeneRIF:11830488
GeneRIF:15959530
GeneRIF:14671643
GeneRIF:12482966
GeneRIF:11855785
GeneRIF:11920534
ICD9:208.9
GeneRIF:15860672
GeneRIF:12511424
GeneRIF:16139274
GeneRIF:12096343
GeneRIF:12183458
GeneRIF:12682273
GeneRIF:15725473
GeneRIF:12438221
GeneRIF:15674415
GeneRIF:15704129
GeneRIF:12538698
GeneRIF:12592338
SNOMEDCT:93143009
GeneRIF:12239155
GeneRIF:12203795
GeneRIF:12613527
GeneRIF:14611815
GeneRIF:15567461
GeneRIF:11986947
GeneRIF:16210627
NCIt:C3161
SNOMEDCT:190024009
SNOMEDCT:190025005
GeneRIF:12553058
GeneRIF:12204872
SNOMEDCT:188762002
GeneRIF:15388576
GeneRIF:12393632
GeneRIF:16179912
GeneRIF:12663445
GeneRIF:14737102
GeneRIF:16005964
GeneRIF:15723339
James Malone
Ele Holloway
SNU398
GeneRIF:15026168
GeneRIF:12368187
GeneRIF:15813938
GeneRIF:15954227
GeneRIF:12232784
GeneRIF:14646594
GeneRIF:15212839
GeneRIF:12497622
GeneRIF:12497631
GeneRIF:15024728
GeneRIF:15337312
GeneRIF:15530656
GeneRIF:15152345
GeneRIF:14657172
GeneRIF:12142731
GeneRIF:12600718
GeneRIF:16106215
DOID:10652
GeneRIF:15451372
GeneRIF:12604387
GeneRIF:12112088
GeneRIF:12600716
GeneRIF:14651959
GeneRIF:12600202
GeneRIF:15635706
Alzheimer's disease
GeneRIF:15708435
GeneRIF:14572447
GeneRIF:14999081
GeneRIF:12732730
GeneRIF:15899246
GeneRIF:15555766
GeneRIF:15106838
GeneRIF:11771745
Dementia in Alzheimer's disease (disorder)[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:15665036
GeneRIF:12480753
GeneRIF:16082716
GeneRIF:12160938
GeneRIF:15082170
GeneRIF:12074831
GeneRIF:15464268
GeneRIF:12528817
GeneRIF:15263903
GeneRIF:15181247
GeneRIF:15147516
GeneRIF:16130099
GeneRIF:12566926
GeneRIF:12928051
GeneRIF:11848684
NCIt:C38778
GeneRIF:15255951
GeneRIF:14523627
GeneRIF:11852060
GeneRIF:12614671
GeneRIF:16258844
GeneRIF:12480756
GeneRIF:15356202
GeneRIF:16179263
GeneRIF:16226260
SNOMEDCT:192160005
NIFSTD:birnlex_2092
GeneRIF:16174740
GeneRIF:12270958
GeneRIF:15728175
GeneRIF:15452311
AD[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:11798857
GeneRIF:12770689
GeneRIF:12116197
Alzheimer's Disease Pathway[accessedResource: NCIt:C38778][accessDate: 2009-11-30]
GeneRIF:15111312
GeneRIF:14519527
GeneRIF:12435432
GeneRIF:15182943
GeneRIF:15172102
A degenerative disease of the BRAIN characterized by the insidious onset of DEMENTIA. Impairment of MEMORY, judgment, attention span, and problem solving skills are followed by severe APRAXIAS and a global loss of cognitive abilities. The condition primarily occurs after age 60, and is marked pathologically by severe cortical atrophy and the triad of SENILE PLAQUES; NEUROFIBRILLARY TANGLES; and NEUROPIL THREADS. (From Adams et al., Principles of Neurology, 6th ed, pp1049-57)[accessedResource: MSH:D000544][accessDate: 2009-11-30]
GeneRIF:15210531
GeneRIF:15722183
GeneRIF:12826738
GeneRIF:11927360
James Malone
GeneRIF:12925530
GeneRIF:15716413
GeneRIF:12565129
GeneRIF:15175114
GeneRIF:16079207
GeneRIF:15557325
GeneRIF:12200623
GeneRIF:11771751
GeneRIF:15358178
GeneRIF:15014128
SNOMEDCT:26929004
GeneRIF:15060098
GeneRIF:12505619
GeneRIF:15115757
GeneRIF:12888622
GeneRIF:14746899
GeneRIF:12192622
GeneRIF:12445809
GeneRIF:14717705
GeneRIF:15823754
GeneRIF:12242547
GeneRIF:12509811
GeneRIF:12815750
GeneRIF:12876480
GeneRIF:15193763
NCIt:C2866
GeneRIF:11826038
GeneRIF:15953364
GeneRIF:15893372
GeneRIF:14688411
GeneRIF:15917098
GeneRIF:15546861
GeneRIF:15956169
GeneRIF:16101387
GeneRIF:12626500
GeneRIF:12928512
GeneRIF:12408226
GeneRIF:12200143
GeneRIF:12009501
GeneRIF:15070964
GeneRIF:16098202
GeneRIF:15781969
GeneRIF:14637088
GeneRIF:12098640
GeneRIF:16102903
GeneRIF:12080182
GeneRIF:15759131
GeneRIF:12759460
GeneRIF:15732116
GeneRIF:11837744
GeneRIF:15708437
GeneRIF:9701251
GeneRIF:12873803
GeneRIF:12417381
GeneRIF:15452128
GeneRIF:11992568
GeneRIF:12527400
GeneRIF:15068254
GeneRIF:14978286
GeneRIF:12650976
GeneRIF:15770150
GeneRIF:15365176
GeneRIF:12070657
GeneRIF:15601849
GeneRIF:14739533
GeneRIF:15034766
GeneRIF:12882323
GeneRIF:12972157
GeneRIF:12928053
GeneRIF:15192701
GeneRIF:15737439
Alzheimer's disease (disorder)[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:14625044
GeneRIF:14722078
GeneRIF:15453269
GeneRIF:11831556
GeneRIF:12824768
GeneRIF:12149413
GeneRIF:12895443
GeneRIF:15048650
A dementia which is an incurable disease of unknown cause, starting in late middle age or in old age, that results in progressive memory loss, impaired thinking, disorientation, and changes in personality and mood, that leads in advanced cases to a profound decline in cognitive and physical functioning, and that is marked histologically by the degeneration of brain neurons especially in the cerebral cortex and by the presence of neurofibrillary tangles and plaques containing beta-amyloid.[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:14739536
GeneRIF:11940690
GeneRIF:12111440
GeneRIF:12809550
SNOMEDCT:192164001
GeneRIF:15776278
GeneRIF:11971084
GeneRIF:12107813
BioportalImporter v.1.2
Tomasz Adamusiak
GeneRIF:16150694
GeneRIF:15375590
GeneRIF:12641733
GeneRIF:15050722
GeneRIF:15355315
GeneRIF:12707938
GeneRIF:15456940
GeneRIF:12177374
GeneRIF:12127670
GeneRIF:15106853
GeneRIF:14521990
GeneRIF:12459318
GeneRIF:11771749
GeneRIF:12614934
GeneRIF:15211644
GeneRIF:12770691
GeneRIF:12111806
GeneRIF:15975076
GeneRIF:15094456
GeneRIF:15621017
GeneRIF:12508915
GeneRIF:12112084
GeneRIF:12387451
GeneRIF:14663182
GeneRIF:11939591
GeneRIF:12876460
GeneRIF:11847218
GeneRIF:15178951
GeneRIF:15313836
GeneRIF:12133495
GeneRIF:15059642
GeneRIF:12600719
GeneRIF:14701757
GeneRIF:12117364
GeneRIF:12707937
GeneRIF:12480749
GeneRIF:12960780
GeneRIF:15509549
GeneRIF:15184629
MSH:D000544
GeneRIF:14985339
GeneRIF:15236409
GeneRIF:12787059
GeneRIF:12499843
GeneRIF:15465084
GeneRIF:15068244
GeneRIF:12796468
GeneRIF:12645087
GeneRIF:16111477
GeneRIF:12417379
GeneRIF:11841602
GeneRIF:12891359
GeneRIF:11552008
GeneRIF:15837559
GeneRIF:16116430
GeneRIF:12535780
GeneRIF:12175481
GeneRIF:12460603
GeneRIF:15082191
GeneRIF:15610181
GeneRIF:12032152
GeneRIF:15931081
GeneRIF:15255950
GeneRIF:15882808
GeneRIF:15203119
GeneRIF:14739535
GeneRIF:16002400
GeneRIF:15944016
GeneRIF:15075440
GeneRIF:14661818
GeneRIF:16116115
GeneRIF:11936240
GeneRIF:14991845
GeneRIF:15026113
Dementia of the Alzheimer's type[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:12151789
GeneRIF:12499840
GeneRIF:15567486
GeneRIF:12605101
GeneRIF:15034937
GeneRIF:16098915
GeneRIF:11756426
GeneRIF:13678670
GeneRIF:14757935
GeneRIF:12499050
GeneRIF:12483461
GeneRIF:15228592
GeneRIF:12742739
GeneRIF:15056725
GeneRIF:15167696
GeneRIF:15123740
GeneRIF:15207261
GeneRIF:12565837
GeneRIF:12401548
GeneRIF:12459519
GeneRIF:12969266
GeneRIF:12109594
GeneRIF:12740599
GeneRIF:15699049
GeneRIF:16023140
GeneRIF:16286548
GeneRIF:12702875
Dementia in Alzheimer's disease, unspecified (disorder)[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:11840502
GeneRIF:15338333
GeneRIF:15084795
GeneRIF:12226093
GeneRIF:11849768
GeneRIF:14708344
GeneRIF:12876265
GeneRIF:15016430
GeneRIF:12697290
GeneRIF:12025816
GeneRIF:12707936
GeneRIF:15485486
GeneRIF:12531514
GeneRIF:15193429
GeneRIF:15745979
GeneRIF:15024730
GeneRIF:14614898
GeneRIF:12727335
GeneRIF:14515137
GeneRIF:12807433
GeneRIF:12514700
GeneRIF:15277615
GeneRIF:11927634
GeneRIF:15364413
GeneRIF:15860461
GeneRIF:12939405
GeneRIF:15068237
A progressive, neurodegenerative disease characterized by loss of function and death of nerve cells in several areas of the brain leading to loss of cognitive function such as memory and language.
[Source: NCI Thesaurus C2866]
GeneRIF:12023056
GeneRIF:15313842
GeneRIF:15053964
GeneRIF:12555245
GeneRIF:15087549
GeneRIF:11905990
GeneRIF:15967987
GeneRIF:15331147
GeneRIF:16027741
GeneRIF:11278808
GeneRIF:12551918
GeneRIF:15577914
GeneRIF:12807963
GeneRIF:11837743
GeneRIF:15860464
GeneRIF:12422374
GeneRIF:12147333
GeneRIF:12438920
GeneRIF:12509807
GeneRIF:14991457
GeneRIF:16000144
GeneRIF:15091317
GeneRIF:15155565
GeneRIF:15585340
GeneRIF:11771746
GeneRIF:14519529
GeneRIF:12145324
GeneRIF:12362316
ICD9:331.0
GeneRIF:15804423
GeneRIF:12627474
GeneRIF:15144856
GeneRIF:12218659
GeneRIF:11592857
GeneRIF:11831025
GeneRIF:12692477
GeneRIF:16181410
GeneRIF:12694406
GeneRIF:14675603
GeneRIF:15370375
GeneRIF:14639046
GeneRIF:12928052
GeneRIF:12816543
GeneRIF:12893422
GeneRIF:12489797
GeneRIF:15596614
GeneRIF:15342129
GeneRIF:12084708
GeneRIF:15755860
Alzheimer's Dementia[accessedResource: NCIt:C2866][accessDate: 2009-11-30]
GeneRIF:16231093
GeneRIF:11920850
GeneRIF:14523088
GeneRIF:12914969
GeneRIF:15106847
GeneRIF:12408231
GeneRIF:12068009
GeneRIF:15802910
GeneRIF:12221172
GeneRIF:15030408
GeneRIF:11897170
GeneRIF:14761950
GeneRIF:15804918
GeneRIF:12859671
GeneRIF:12890766
GeneRIF:12609057
GeneRIF:15013567
GeneRIF:15975077
GeneRIF:15522224
GeneRIF:12824062
GeneRIF:14765129
GeneRIF:12223024
Alzheimers Dementia[accessedResource: DOID:10652][accessDate: 2009-11-30]
GeneRIF:12486154
EV:0100106
MAT:0000171
BioportalImporter v.1.2
James Malone
seminal vesicle
FBbt:00004958
BTO:0001234
Either of a pair of glandular pouches that lie one on either side of the male reproductive tract and in the human male secrete a sugar- and protein-containing fluid into the ejaculatory duct.[accessedResource: BTO:0001234][accessDate: 2009-11-30]
FMAID:19386
Seminal gland[accessedResource: FMAID:19386][accessDate: 2009-11-30]
A microgram is a mass unit which is equal to 1 gram x 10^-9
Tomasz Adamusiak
BioportalImporter v.1.2
UO:0000024
Jie Zheng
A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.[accessedResource: UO:0000024][accessDate: 2009-11-30]
James Malone
MO_796
nanogram
ng[accessedResource: UO:0000024][accessDate: 2009-11-30]
James Malone
GM12156
MO_688
Tomasz Adamusiak
UO:0000042
BioportalImporter v.1.2
Jie Zheng
A substance unit equal to 10^[-12] mol.[accessedResource: UO:0000042][accessDate: 2009-11-30]
James Malone
pmol[accessedResource: UO:0000042][accessDate: 2009-11-30]
A picomole is a substance unit equal to 10^-12 mol.
picomole
MFO:0003460
Multicellular anatomical structure with largely bona-fide boundary that transduces some sensory stimulus to the nervous system.[accessedResource: FBbt:00005155][accessDate: 2009-11-30]
sensory system
WBbt:0005832
TAO:0000182
MAT:0000031
James Malone
BioportalImporter v.1.2
AAO:0000555
ZFA:0000282
FBbt:00005155
MA:0002442
RGD:70508
NIFSTD:birnlex_266
NIFSTD:birnlex_214
Tomasz Adamusiak
James Malone
Sprague Dawley
GeneRIF:12161822
GeneRIF:11840509
Unspecified bipolar affective disorder, NOS (disorder)[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:12192619
GeneRIF:15450783
Unspecified bipolar affective disorder (disorder)[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:12815743
GeneRIF:12082561
GeneRIF:14531760
GeneRIF:12496953
GeneRIF:15539862
James Malone
GeneRIF:15940297
GeneRIF:14604453
Unspecified bipolar affective disorder, unspecified (disorder)[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:16044170
GeneRIF:14966479
GeneRIF:16168956
GeneRIF:15257153
MANIC DEPRESSIVE ILLNESS[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:14985387
GeneRIF:11840505
GeneRIF:12951196
GeneRIF:15917720
GeneRIF:12097806
BioportalImporter v.1.2
MSH:D001714
GeneRIF:15909293
GeneRIF:15660667
Manic Depressive disorder[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:15820318
GeneRIF:11901356
GeneRIF:11930170
GeneRIF:11702051
GeneRIF:12610658
SNOMEDCT:13746004
GeneRIF:15983625
DOID:3312
GeneRIF:14699425
SNOMEDCT:191654006
GeneRIF:15806582
A major affective disorder marked by severe mood swings (manic or major depressive episodes) and a tendency to remission and recurrence.[accessedResource: MSH:D001714][accessDate: 2009-11-30]
GeneRIF:12782961
GeneRIF:15799788
GeneRIF:12498692
GeneRIF:12664313
GeneRIF:15452587
GeneRIF:15622415
Depressive-manic psych.[accessedResource: DOID:3312][accessDate: 2009-11-30]
NIFSTD:birnlex_12754
bipolar disorder
ICD9:296.80
GeneRIF:16044173
GeneRIF:14678452
GeneRIF:12232779
Manic-Depression[accessedResource: NCIt:C34423][accessDate: 2009-11-30]
GeneRIF:12949534
Manic-depressive syndrome NOS[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:15167705
SNOMEDCT:192365005
GeneRIF:15050861
GeneRIF:15211633
GeneRIF:15111989
GeneRIF:12555230
GeneRIF:15576061
GeneRIF:12565145
GeneRIF:14743183
GeneRIF:14729229
Tomasz Adamusiak
GeneRIF:15261714
GeneRIF:15630410
GeneRIF:12111480
GeneRIF:12565915
SNOMEDCT:191646009
GeneRIF:12808434
GeneRIF:15824745
GeneRIF:15838535
GeneRIF:12140781
Bipolar disorder, unspecified[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:15885920
GeneRIF:14967554
Bipolar disorder (disorder)[accessedResource: DOID:3312][accessDate: 2009-11-30]
GeneRIF:14729237
NCIt:C34423
GeneRIF:15737668
SNOMEDCT:191647000
GeneRIF:14582141
GeneRIF:12647258
James Malone
Ele Holloway
NCIH838
James Malone
WEB:http://en.wikipedia.org/wiki/Cardiomyopathy#Ischemic_cardiomyopathy
Ischemic cardiomyopathy is a cardiomyopathy in which a weakness in the muscle of the heart due to inadequate oxygen delivery to the myocardium with coronary artery disease being the most common cause.
ischemic cardiomyopathy
NCIH187
James Malone
Ele Holloway
distant metastasis free survival
James Malone
A temporal measure of the length of time that a patient will remain alive without the disease getting worse.
nifedipine
A dihydropyridine that has formula C17H18N2O6.[accessedResource: CHEBI:7565][accessDate: 2009-11-30]
CHEBI:7565
dimethyl 2,6-dimethyl-4-(2-nitrophenyl)-1,4-dihydropyridine-3,5-dicarboxylate[accessedResource: CHEBI:7565][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
embryonic dorsal apodeme
FBbt:00005745
EHDAA:3694
The middle of the three primary divisions of the developing vertebrate brain or the corresponding part of the adult brain.[accessedResource: BTO:0000138][accessDate: 2009-11-30]
ZFA:0000128
midbrain
EV:0100242
SAEL:68
TAO:0000128
FMAID:61993
Tomasz Adamusiak
MFO:0002420
NIFSTD:birnlex_1667
BioportalImporter v.1.2
Organ component of neuraxis that has as its parts the tectum, cerebral peduncle, midbrain tegmentum and cerebral aqueduct. Examples: There is only one midbrain.[accessedResource: FMAID:61993][accessDate: 2009-11-30]
BTO:0000138
MAT:0000106
XAO:0000014
EMAPA:16974
MA:0000207
James Malone
mesencephalon[accessedResource: MAT:0000106][accessDate: 2009-11-30]
clinical treatment
The current clinical treatment(s) of the patient from which the biosource is derived. E.g. radiotherapy
radiotherapy
MO_384
Tomasz Adamusiak
Jie Zheng
James Malone
A microgram is a mass unit which is equal to 1 gram x 10^-15
A mass unit which is equal to 10^[-15] g.[accessedResource: UO:0000026][accessDate: 2009-11-30]
femtogram
UO:0000026
fg[accessedResource: UO:0000026][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
GeneRIF:15716416
temporal lobe epilepsy
GeneRIF:16095760
GeneRIF:15452305
Tomasz Adamusiak
James Malone
NIFSTD:birnlex_12733
GeneRIF:14510824
GeneRIF:12470703
GeneRIF:16254490
GeneRIF:15111672
GeneRIF:15245492
GeneRIF:15193619
GeneRIF:12205652
DOID:3328
GeneRIF:15145077
GeneRIF:12115687
GeneRIF:11951051
Temporal lobe epilepsy (disorder) [Ambiguous][accessedResource: DOID:3328][accessDate: 2009-11-30]
GeneRIF:12686399
BioportalImporter v.1.2
SNOMEDCT:193000002
GeneRIF:15592755
Temporal lobe epilepsy (disorder)[accessedResource: DOID:3328][accessDate: 2009-11-30]
GeneRIF:14625043
GeneRIF:15672539
GeneRIF:15246112
GeneRIF:15079010
GeneRIF:14503638
A localization-related (focal) form of epilepsy characterized by recurrent seizures that arise from foci within the temporal lobe, most commonly from its mesial aspect. A wide variety of psychic phenomena may be associated, including illusions, hallucinations, dyscognitive states, and affective experiences. The majority of complex partial seizures (see EPILEPSY, COMPLEX PARTIAL) originate from the temporal lobes. Temporal lobe seizures may be classified by etiology as cryptogenic, familial, or symptomatic (i.e., related to an identified disease process or lesion). (From Adams et al., Principles of Neurology, 6th ed, p321)[accessedResource: MSH:D004833][accessDate: 2009-11-30]
GeneRIF:12122039
GeneRIF:12601092
GeneRIF:15799783
GeneRIF:15048887
GeneRIF:14643764
MSH:D004833
FBbt:00004852
EMAPA:18682
BioportalImporter v.1.2
MA:0000408
MAT:0000186
BTO:0000405
penis
A male organ of copulation that in male mammals including humans usually functions as the channel by which urine leaves the body.[accessedResource: BTO:0000405][accessDate: 2009-11-30]
EHDAA:9380
FMAID:9707
James Malone
EV:0100107
SAEL:80
CHEBI:50138
lonidamine[accessedResource: CHEBI:50138][accessDate: 2009-11-30]
1-(2,4-dichlorobenzyl)-1H-indazole-3-carboxylic acid
BioportalImporter v.1.2
An indazole that has formula C15H10Cl2N2O2.[accessedResource: CHEBI:50138][accessDate: 2009-11-30]
The smooth muscle lining the uterus.[accessedResource: NCIt:C12314][accessDate: 2009-11-30]
NCIt:C12314
The smooth muscle coat of the uterus, which forms the main mass of the organ.[accessedResource: BTO:0000907][accessDate: 2009-11-30]
BTO:0000907
James Malone
BioportalImporter v.1.2
myometrium
Leiomyomosarcoma, no subtype (morphologic abnormality)[accessedResource: DOID:1967][accessDate: 2009-11-30]
Leiomyosarcoma NOS (morphologic abnormality)[accessedResource: DOID:1967][accessDate: 2009-11-30]
DOID:1967
James Malone
SNOMEDCT:51549004
MSH:D007890
GeneRIF:15051039
SNOMEDCT:189790006
NCIt:C3158
BioportalImporter v.1.2
An uncommon, aggressive malignant smooth muscle neoplasm, usually occurring in post-menopausal women. It is characterized by a proliferation of neoplastic spindle cells. Morphologic variants include epithelioid, granular cell, inflammatory and myxoid leimyosarcomas.[accessedResource: NCIt:C3158][accessDate: 2009-11-30]
GeneRIF:15024701
A sarcoma containing large spindle cells of smooth muscle. Although it rarely occurs in soft tissue, it is common in the viscera. It is the most common soft tissue sarcoma of the gastrointestinal tract and uterus. The median age of patients is 60 years. (From Dorland, 27th ed; Holland et al., Cancer Medicine, 3d ed, p1865)[accessedResource: MSH:D007890][accessDate: 2009-11-30]
GeneRIF:15051038
GeneRIF:12177782
leiomyosarcoma
Leiomyosarcomas[accessedResource: NCIt:C3158][accessDate: 2009-11-30]
GeneRIF:11759055
James Malone
Ele Holloway
SNU387
James Malone
Ele Holloway
Calu1
BioportalImporter v.1.2
FMAID:7158
EMAPA:16727
AAO:0000541
XAO:0000117
MA:0000327
TADS:0000043
TAO:0000272
James Malone
.[accessedResource: FBbt:00005024][accessDate: 2009-11-30]
EHDAA:2203
MFO:0003160
respiratory system
Functional system which consists of structures involved in respiration.[accessedResource: FMAID:7158][accessDate: 2009-11-30]
EV:0100036
SAEL:90
BTO:0000203
MAT:0000030
Apparatus respiratorius[accessedResource: FMAID:7158][accessDate: 2009-11-30]
FBbt:00005024
A system of organs subserving the function of respiration and in air-breathing vertebrates consisting typically of the lungs and their nervous and circulatory supply and the channels by which these are continuous with the outer air.[accessedResource: BTO:0000203][accessDate: 2009-11-30]
GM12234
James Malone
FMAID:12516
BioportalImporter v.1.2
XAO:0000431
EV:0100063
EHDAA:8009
MA:0000348
EMAPA:17938
SAEL:110
1: One of the hard bony appendages that are borne on the jaws or in many of the lower vertebrates on other bones in the walls of the mouth or pharynx and serve especially for the prehension and mastication of food and as weapons of offense and defense.n2: Any of various usually hard and sharp processes especially about the mouth of an invertebrate.[accessedResource: BTO:0000397][accessDate: 2009-11-30]
tooth
BTO:0000397
Organ with a cavity which consist of dentine and enamel. Examples: incisor, molar.[accessedResource: FMAID:12516][accessDate: 2009-11-30]
James Malone
ZFA:0000644
James Malone
RGD:61103
WKY
James Malone
FBbt:00005476
dorsal apodeme specific anlage
A 6-aminopurine that has formula C12H11N5.[accessedResource: CHEBI:29022][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:29022
N-benzyladenine
N-benzyl-9H-purin-6-amine[accessedResource: CHEBI:29022][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
Masticatory Muscle[accessedResource: NCIt:C13074][accessDate: 2009-11-30]
Masticatory Muscles[accessedResource: NCIt:C13074][accessDate: 2009-11-30]
BTO:0001755
Muscles arising in the zygomatic arch that close the jaw. (MeSH)
[Source: NCI Thesaurus C13074]
NCIt:C13074
masseter muscle
A thick muscle in the cheek that closes the jaws during chewing.[accessedResource: BTO:0001755][accessDate: 2009-11-30]
B cell derived cell line
James Malone
Ele Holloway
OE19
true
BioportalImporter v.1.2
obsolete_aspirin
2-(acetyloxy)benzoic acid[accessedResource: CHEBI:15365][accessDate: 2009-11-30]
duplicate common name of acetylsalycilic acid. deprecated in favour of this
CHEBI:15365
acetylsalicylic acid[accessedResource: CHEBI:15365][accessDate: 2009-11-30]
1.8
visual cortex
MAT:0000509
The area of the occipital lobe of the cerebral cortex concerned with vision; it consists of the first visual area or striate c. (Brodmann's area 17) and two other areas, the second visual area or parastriate area (Brodmann's area 18) and the third visual area or peristriate area (Brodmann's area 19).[accessedResource: BTO:0001857][accessDate: 2009-11-30]
Striate cortex[accessedResource: FMAID:236871][accessDate: 2009-11-30]
BioportalImporter v.1.2
MA:0000914
BTO:0001857
EV:0100469
FMAID:236871
James Malone
Primary visual cortex[accessedResource: FMAID:236871][accessDate: 2009-11-30]
DOID:7474
Mesothelioma (malignant) of pleura (disorder)[accessedResource: DOID:7474][accessDate: 2009-11-30]
malignant pleural mesothelioma
GeneRIF:15829320
GeneRIF:14719068
James Malone
Malignant Mesothelioma of the Pleura[accessedResource: NCIt:C7376][accessDate: 2009-11-30]
BioportalImporter v.1.2
Malignant Mesothelioma of Pleura[accessedResource: NCIt:C7376][accessDate: 2009-11-30]
GeneRIF:15014036
NCIt:C7376
SNOMEDCT:254645002
mg[accessedResource: UO:0000022][accessDate: 2009-11-30]
Tomasz Adamusiak
A milligram is a mass unit which is equal to one-millionth of a kilogram.
Jie Zheng
BioportalImporter v.1.2
MO_949
milligram
UO:0000022
A mass unit which is equal to one thousandth of a gram or 10^[-3] g.[accessedResource: UO:0000022][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
Ele Holloway
DOID:4358
metastatic melanoma
James Malone
Ele Holloway
SNU449
James Malone
FBbt:00005670
embryonic esophageal ganglion
Leydig cell
James Malone
BioportalImporter v.1.2
CL:0000178
testis - leydig cell
interstitial cell[accessedResource: CL:0000178][accessDate: 2009-11-30]
Caki2
James Malone
Ele Holloway
FBbt:00005538
clypeo-labral primordium
James Malone
FBbt:00004954
male gonad
MAT:0000131
SAEL:93
James Malone
BTO:0001363
testicle
Definitive germ cell of the male sex.[accessedResource: FMAID:67338][accessDate: 2009-11-30]
A typically paired male reproductive gland that produces sperm and that in most mammals is contained within the scrotum at sexual maturity.[accessedResource: BTO:0001363][accessDate: 2009-11-30]
ZFA:0009006
testis
WBbt:0005321
BioportalImporter v.1.2
MA:0002765
James Malone
GM12236
TAO:0000163
renal system
EMAPA:17366
FBbt:00005056
Urinary system[accessedResource: FMAID:7159][accessDate: 2009-11-30]
WBbt:0005736
SAEL:116
ZFA:0000163
EV:0100095
MAT:0000027
EHDAA:5901
Systema urinaria[accessedResource: FMAID:7159][accessDate: 2009-11-30]
FMAID:7159
renal/urinary system[accessedResource: MAT:0000027][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
XAO:0000143
TADS:0000162
DOID:4905
Carcinoma of pancreas (disorder)[accessedResource: DOID:4905][accessDate: 2009-11-30]
pancreatic carcinoma
Ele Holloway
BioportalImporter v.1.2
Tomasz Adamusiak
Carcinoma of pancreas[accessedResource: DOID:4905][accessDate: 2009-11-30]
Exocrine Pancreas Carcinoma[accessedResource: DOID:4905][accessDate: 2009-11-30]
Dahl salt-sensitive
RGD:1582190
James Malone
ArrayExpress production team
RNAi profiling
James Malone
RNAi profiling is an experiment type in which double stranded RNA is synthesized with a sequence complementary to a gene(s) of interest and introduced into a cell or organism, where it is recognized as exogenous genetic material and activates the RNAi pathway resulting in knockdown of the transcripts and providing a means to study downstream changes in gene expression.
5-[2-(4-hydroxyphenyl)ethenyl]benzene-1,3-diol[accessedResource: CHEBI:27881][accessDate: 2009-11-30]
CHEBI:27881
A stilbenol that has formula C14H12O3.[accessedResource: CHEBI:27881][accessDate: 2009-11-30]
resveratrol
James Malone
Ele Holloway
BioportalImporter v.1.2
BioportalImporter v.1.2
An acetylcysteine that has formula C5H9NO3S.[accessedResource: CHEBI:28939][accessDate: 2009-11-30]
CHEBI:28939
N-acetyl-L-cysteine
The proximal part of the limb (e.g. between shoulder and elbow)[accessedResource: MAT:0000093][accessDate: 2009-11-30]
stylopod
James Malone
BioportalImporter v.1.2
MAT:0000093
MA:0002717
DOID:640
encephalomyelitis
GeneRIF:15310853
MSH:D004679
Encephalitis &/or myelitis[accessedResource: DOID:640][accessDate: 2009-11-30]
Encephalomyelitis NOS (disorder)[accessedResource: DOID:640][accessDate: 2009-11-30]
SNOMEDCT:62950007
NCIt:C34580
A general term indicating inflammation of the BRAIN and SPINAL CORD, often used to indicate an infectious process, but also applicable to a variety of autoimmune and toxic-metabolic conditions. There is significant overlap regarding the usage of this term and ENCEPHALITIS in the literature.[accessedResource: MSH:D004679][accessDate: 2009-11-30]
BioportalImporter v.1.2
Encephalomyelitis NOS[accessedResource: DOID:640][accessDate: 2009-11-30]
GeneRIF:12496452
SNOMEDCT:230196000
Encephalitis/myelitis NOS[accessedResource: DOID:640][accessDate: 2009-11-30]
Encephalitis/myelitis NOS (disorder)[accessedResource: DOID:640][accessDate: 2009-11-30]
Encephalomyelitis (disorder)[accessedResource: DOID:640][accessDate: 2009-11-30]
James Malone
OE21
James Malone
Ele Holloway
James Malone
BioportalImporter v.1.2
ectoderm
The outer of the three germ layers of the embryo (the other two being mesoderm and endoderm). Ectoderm gives rise to epidermis and neural tissue.[accessedResource: BTO:0000315][accessDate: 2009-11-30]
BTO:0000315
FBbt:00005428
James Malone
Temporal lobe is the ventrolateral lobe of five lobes comprising each cerebral hemisphere. It is bounded dorsally by the lateral fissure and posteriorly by an arbitrary border shared with the occipital lobe.[accessedResource: FMAID:61825][accessDate: 2009-11-30]
BTO:0001355
One of the two parietal lobes of the brain located behind the frontal lobe at the top of the brain. Parietal Lobe, Right - Damage to this area can cause visuo-spatial deficits (e.g., the patient may have difficulty finding their way around new, or even familiar, places). Parietal Lobe, Left - Damage to this area may disrupt a patient's ability to understand spoken and/or written language. The parietal lobes contain the primary sensory cortex which controls sensation (touch, pressure). Behind the primary sensory cortex is a large association area that controls fine sensation (judgment of texture, weight, size, shape).[accessedResource: BTO:0001355][accessDate: 2009-11-30]
Temporal cortex[accessedResource: FMAID:61825][accessDate: 2009-11-30]
temporal lobe
MAT:0000508
BioportalImporter v.1.2
EMAPA:18797
FMAID:61825
EV:0100169
2-(3,4-dihydroxyphenyl)-3,5,7-trihydroxy-4H-chromen-4-one[accessedResource: CHEBI:16243][accessDate: 2009-11-30]
BioportalImporter v.1.2
A pentahydroxyflavone that has formula C15H10O7.[accessedResource: CHEBI:16243][accessDate: 2009-11-30]
CHEBI:16243
quercetin
An abscisic acid that has formula C15H20O4.[accessedResource: CHEBI:2365][accessDate: 2009-11-30]
CHEBI:2365
(2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid[accessedResource: CHEBI:2365][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
(+)-abscisic acid
bacterial disease
James Malone
A bacterial disease is a disease factor that is caused primarily by bacteria.
embryonic epipharynx
FBbt:00005614
James Malone
Jie Zheng
BioportalImporter v.1.2
A microgram is a mass unit which is equal to 1 gram x 10^-6
microgram
µg
ug[accessedResource: UO:0000023][accessDate: 2009-11-30]
UO:0000023
Tomasz Adamusiak
A mass unit which is equal to one millionth of a gram or 10^[-6] g.[accessedResource: UO:0000023][accessDate: 2009-11-30]
MO_438
James Malone
James Malone
A nucleated cell of the myeloid or lymphoid lineages, found in blood or other tissue.[accessedResource: CL:0000738][accessDate: 2009-11-30]
immune cell[accessedResource: CL:0000738][accessDate: 2009-11-30]
BioportalImporter v.1.2
white blood cell[accessedResource: CL:0000738][accessDate: 2009-11-30]
leucocyte[accessedResource: CL:0000738][accessDate: 2009-11-30]
CL:0000738
Any of the blood cells that are colorless, lack hemoglobin, contain a nucleus, and include the lymphocytes, monocytes, neutrophils, eosinophils, and basophils.[accessedResource: BTO:0000751][accessDate: 2009-11-30]
BTO:0000751
leukocyte
SNU423
James Malone
Ele Holloway
Either of the paired ducts in the human male that are formed by the junction of the duct from the seminal vesicle with the vas deferens, pass through the prostate, and open into or close to the prostatic utricle.[accessedResource: BTO:0001580][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
BTO:0001580
FMAID:19325
EMAPA:19088
FBbt:00004965
TADS:0000489
MAT:0000170
ejaculatory duct
FMAID:60201
SAEL:21
Cochlear[accessedResource: NCIt:C12395][accessDate: 2009-11-30]
EV:0100363
Tomasz Adamusiak
NCIt:C12395
BTO:0000267
The snail shell-shaped auditory component of the inner ear. It contains the sensory organ of hearing.
[Source: NCI Thesaurus C12395]
Cochlear part of bony labyrinth[accessedResource: FMAID:60201][accessDate: 2009-11-30]
XAO:0000197
cochlea
BioportalImporter v.1.2
James Malone
A division of the bony labyrinth of the inner ear of higher vertebrates that is usually coiled like a snail shell and is the seat of the hearing organ.[accessedResource: BTO:0000267][accessDate: 2009-11-30]
EHDAA:4716
EMAPA:17597
MA:0000240
Cochlear Organ[accessedResource: NCIt:C12395][accessDate: 2009-11-30]
NIFSTD:birnlex_1190
MAT:0000144
adult muscle precursor primordium
FBbt:00005516
James Malone
BioportalImporter v.1.2
A mechanoreceptor cell located in the organ of Corti that is sensitive to auditory stimuli and in the vestibular apparatus that is sensitive to movement of the head. In each case the accessory sensory structures are arranged so that appropriate stimuli cause movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system.[accessedResource: CL:0000202][accessDate: 2009-11-30]
NIFSTD:sao630986029
Tomasz Adamusiak
auditory hair cell[accessedResource: CL:0000202][accessDate: 2009-11-30]
cochlear hair cell
James Malone
CL:0000202
CS57544
CS57544 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158568&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158568&type=germplasm
James Malone
PEL-5
James Malone
Ele Holloway
James Malone
Ele Holloway
ML2
embryonic foregut
James Malone
FBbt:00005606
Knock in expression is a process in which a gene is replaced by an altered version of the same gene using homologous recombination resulting in a gain of function.
James Malone
knock in expression
Tomasz Adamusiak
strain or line design
MO_462
developmental stage
puberty
Jie Zheng
A developmental stage is an information entity about some identifiable period in an organism's life cycle e.g. puberty
James Malone
Tomasz Adamusiak
true
MO_878
Tomasz Adamusiak
Publication in preparation before submitting to a journal.
in preparation
true
obsolete platform because the distinction between instrument and platform is very fuzzy
obsolete_platform
The specific version (such as manufacturer, model, etc.) of a technology that is used to carry out a laboratory or computational experiment.
Tomasz Adamusiak
Ele Holloway
3H-1,2-dithiole-3-thione
CHEBI:50866
GeneRIF:12881718
GeneRIF:15948146
1.5
Glial Neoplasm[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:15015772
GeneRIF:12231538
GeneRIF:15973152
true
GeneRIF:15273738
GeneRIF:15201971
GeneRIF:15469737
GeneRIF:12810672
GeneRIF:12198774
GeneRIF:12907597
GeneRIF:15088070
GeneRIF:11809417
A benign or malignant brain and spinal cord tumor that arises from glial cells (astrocytes, oligodendrocytes, ependymal cells). Tumors that arise from astrocytes are called astrocytic tumors or astrocytomas. Tumors that arise from oligodendrocytes are called oligodendroglial tumors. Tumors that arise from ependymal cells are called ependymomas.[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
glial tumors[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
Benign and malignant central nervous system neoplasms derived from glial cells (i.e., astrocytes, oligodendrocytes, and ependymocytes). Astrocytes may give rise to astrocytomas (ASTROCYTOMA) or glioblastoma multiforme (see GLIOBLASTOMA). Oligodendrocytes give rise to oligodendrogliomas (OLIGODENDROGLIOMA) and ependymocytes may undergo transformation to become EPENDYMOMA; CHOROID PLEXUS NEOPLASMS; or colloid cysts of the third ventricle. (From Escourolle et al., Manual of Basic Neuropathology, 2nd ed, p21)[accessedResource: MSH:D005910][accessDate: 2009-11-30]
GeneRIF:12545160
GeneRIF:15332324
GeneRIF:15774464
Tumor of Neuroglia[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
SNOMEDCT:189926000
GeneRIF:12850541
GeneRIF:14530312
GeneRIF:16389900
GeneRIF:16033775
GeneRIF:11716067
GeneRIF:12388547
GeneRIF:15160992
GeneRIF:16215635
GeneRIF:15509526
Glioma[accessedResource: DOID:2627][accessDate: 2009-11-30]
GeneRIF:15657358
GeneRIF:11949822
GeneRIF:15958622
GeneRIF:15072448
Gliomas (morphologic abnormality)[accessedResource: DOID:2627][accessDate: 2009-11-30]
GeneRIF:12130632
GeneRIF:15056287
Neuroglial Neoplasm[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:15580296
GeneRIF:11705870
GeneRIF:12843260
GeneRIF:11859970
GeneRIF:12684632
GeneRIF:14997014
GeneRIF:11930164
GeneRIF:12735302
GeneRIF:12962281
GeneRIF:16098466
DOID:2627
GeneRIF:12496285
GeneRIF:12764090
Neuroglial tumor[accessedResource: DOID:2627][accessDate: 2009-11-30]
GeneRIF:15557754
GeneRIF:14597411
GeneRIF:12576462
Neoplasm of Neuroglia[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:15737330
GeneRIF:12509854
GeneRIF:15383564
GeneRIF:15254085
MSH:D005910
GeneRIF:16084492
GeneRIF:12125964
GeneRIF:16049340
GeneRIF:15882793
GeneRIF:11836615
GeneRIF:12821932
GeneRIF:15047712
SNOMEDCT:189908003
GeneRIF:15256062
GeneRIF:15184909
GeneRIF:15816541
GeneRIF:12133571
GeneRIF:16264179
GeneRIF:16304992
GeneRIF:15269346
SNOMEDCT:115240006
GeneRIF:15126357
GeneRIF:15809742
Tumors of Neuroglia[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:15527101
Neoplasm of the Neuroglia[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:12738994
GeneRIF:15989758
GeneRIF:11844831
GeneRIF:15812817
GeneRIF:11920587
GeneRIF:15469871
GeneRIF:15123617
Glioma NOS (morphologic abnormality)[accessedResource: DOID:2627][accessDate: 2009-11-30]
GeneRIF:15893739
GeneRIF:14504888
GeneRIF:15580288
GeneRIF:15198128
GeneRIF:14719118
GeneRIF:15814461
GeneRIF:15218947
GeneRIF:15870690
GeneRIF:14705150
GeneRIF:15684595
GeneRIF:12629150
GeneRIF:14991747
SNOMEDCT:74532006
GeneRIF:15015771
GeneRIF:15696967
GeneRIF:15361550
GeneRIF:13130092
GeneRIF:12084351
GeneRIF:15547763
GeneRIF:15671555
GeneRIF:12507885
GeneRIF:12518988
GeneRIF:11716069
GeneRIF:12843258
GeneRIF:12963026
Tumor of the Neuroglia[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:15867349
GeneRIF:14603470
GeneRIF:11716065
GeneRIF:12651906
GeneRIF:12507886
GeneRIF:11948808
James Malone
GeneRIF:12778072
GeneRIF:12932816
GeneRIF:16033774
GeneRIF:14633698
BioportalImporter v.1.2
GeneRIF:12957651
GeneRIF:12651623
GeneRIF:9109541
GeneRIF:15161654
GeneRIF:12698196
GeneRIF:15138575
GeneRIF:15201989
GeneRIF:12783249
Glioma (morphologic abnormality)[accessedResource: DOID:2627][accessDate: 2009-11-30]
Neoplasms of Neuroglia[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
GeneRIF:15589840
GeneRIF:15592495
GeneRIF:15696973
GeneRIF:11856869
GeneRIF:12856717
glial cell tumor[accessedResource: DOID:2627][accessDate: 2009-11-30]
GeneRIF:12118245
GeneRIF:14676120
GeneRIF:15193433
GeneRIF:15788675
GeneRIF:16027728
GeneRIF:13130506
GeneRIF:15094455
GeneRIF:15743799
GeneRIF:12600989
GeneRIF:15791479
Replaced with central nervous system cancer (EFO_0000326)
obsolete_glioma
GeneRIF:12609716
GeneRIF:16092940
GeneRIF:15041728
GeneRIF:12061725
Neuroglial Neoplasms[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
Glioma NOS[accessedResource: DOID:2627][accessDate: 2009-11-30]
GeneRIF:14558597
GeneRIF:12799382
GeneRIF:15915502
GeneRIF:11913980
NCIt:C3059
GeneRIF:15334059
GeneRIF:15867356
GeneRIF:12730958
GeneRIF:15531913
GeneRIF:12883693
Glial Tumor[accessedResource: NCIt:C3059][accessDate: 2009-11-30]
A benign or malignant brain and spinal cord tumor that arises from glial cells (astrocytes, oligodendrocytes, ependymal cells). Tumors that arise from astrocytes are called astrocytic tumors or astrocytomas. Tumors that arise from oligodendrocytes are called oligodendroglial tumors. Tumors that arise from ependymal cells are called ependymomas. -- 2004
[Source: NCI Thesaurus C3059]
GeneRIF:15451022
GeneRIF:12388552
GeneRIF:15178645
GeneRIF:15469933
NCIH720
James Malone
Ele Holloway
BioportalImporter v.1.2
NCIt:C2951
GeneRIF:12829439
GeneRIF:12127815
GeneRIF:16015705
GeneRIF:12829997
GeneRIF:14961153
MSH:D008103
James Malone
GeneRIF:15982324
GeneRIF:15765409
GeneRIF:15094940
GeneRIF:12532467
GeneRIF:11953887
GeneRIF:15239259
Cirrhosis[accessedResource: DOID:5082][accessDate: 2009-11-30]
Cirrhosis of liver NOS[accessedResource: DOID:5082][accessDate: 2009-11-30]
Cirrhosis of liver NOS (disorder)[accessedResource: DOID:5082][accessDate: 2009-11-30]
GeneRIF:15808312
SNOMEDCT:235891006
GeneRIF:15104370
GeneRIF:14768003
Liver disease in which the normal microcirculation, the gross vascular anatomy, and the hepatic architecture have been variably destroyed and altered with fibrous septa surrounding regenerated or regenerating parenchymal nodules.[accessedResource: MSH:D008103][accessDate: 2009-11-30]
GeneRIF:16255765
cirrhosis of liver
GeneRIF:15956070
GeneRIF:12945872
GeneRIF:15742396
GeneRIF:12631357
Liver Cirrhosis[accessedResource: DOID:5082][accessDate: 2009-11-30]
GeneRIF:15172884
GeneRIF:15222038
GeneRIF:16098781
GeneRIF:12971960
GeneRIF:12757931
GeneRIF:12842454
SNOMEDCT:19943007
GeneRIF:15710227
GeneRIF:15550559
GeneRIF:15737463
DOID:5082
GeneRIF:14669345
GeneRIF:15368451
Cirrhosis of liver (disorder)[accessedResource: DOID:5082][accessDate: 2009-11-30]
GeneRIF:15094224
GeneRIF:15956705
Tomasz Adamusiak
BioportalImporter v.1.2
UO:0000102
A nanoliter is a volume unit which is equal to one thousandth of one millionth of a liter or 10^-9 L.
nanoliter
Jie Zheng
MO_754
A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.[accessedResource: UO:0000102][accessDate: 2009-11-30]
nl[accessedResource: UO:0000102][accessDate: 2009-11-30]
James Malone
James Malone
A tiling path experiment is an experiment type in which a tiling path array (where probes are arrayed covering target regions e.g. a genome or chromosome at very high density) is used to identify transcribed regions.
ArrayExpress production team
tiling path
CHEBI:18248
An iron group element that has formula Fe.[accessedResource: CHEBI:18248][accessDate: 2009-11-30]
iron
James Malone
Ele Holloway
BioportalImporter v.1.2
lymphoid neoplasm
Tomasz Adamusiak
James Malone
hematological neoplasm
hematological cancer
blood cancer
anticholesteremic drug
CHEBI:35821
CHEBI:35821
James Malone
BioportalImporter v.1.2
A substance used to lower plasma cholesterol levels.[accessedResource: CHEBI:35821][accessDate: 2009-11-30]
James Malone
TERV
FBbt:00005159
gustatory sensory organ[accessedResource: MAT:0000275][accessDate: 2009-11-30]
Gustatory system[accessedResource: FMAID:7194][accessDate: 2009-11-30]
MAT:0000275
BioportalImporter v.1.2
ZFA:0001101
James Malone
FMAID:7194
Gustatory organ system[accessedResource: FMAID:7194][accessDate: 2009-11-30]
Any sense organ (FBbt:00005155) that has function 'detection of chemical stimulus involved in sensory perception of taste (GO:0050912)'.[accessedResource: FBbt:00005159][accessDate: 2009-11-30]
TAO:0001101
taste system
3 days post planting
Tomasz Adamusiak
Jie Zheng
James Malone
MO_467
age
A temporal measurement of the time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting).
g[accessedResource: UO:0000021][accessDate: 2009-11-30]
Jie Zheng
gram
A gram is a mass unit which is equal to one-thousanth of a kilogram.
A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.[accessedResource: UO:0000021][accessDate: 2009-11-30]
MO_825
James Malone
UO:0000021
Tomasz Adamusiak
BioportalImporter v.1.2
R1
James Malone
Ele Holloway
James Malone
FBbt:00005612
embryonic esophagus
MJ
James Malone
Ele Holloway
GeneRIF:15082767
BioportalImporter v.1.2
DOID:2962
GeneRIF:12095617
Cockayne's syndrome[accessedResource: DOID:2962][accessDate: 2009-11-30]
Cokayne syndrome[accessedResource: DOID:2962][accessDate: 2009-11-30]
GeneRIF:12748643
MSH:D003057
cockayne syndrome
GeneRIF:11809892
GeneRIF:16246722
SNOMEDCT:21086008
NCIt:C9460
James Malone
A syndrome characterized by multiple system abnormalities including DWARFISM; PHOTOSENSITIVITY DISORDERS; PREMATURE AGING; and HEARING LOSS. It is caused by mutations of a number of autosomal recessive genes encoding proteins that involve transcriptional-coupled DNA REPAIR processes. Cockayne syndrome is classified by the severity and age of onset. Type I (classical; CSA) is early childhood onset in the second year of life; type II (congenital; CSB) is early onset at birth with severe symptoms; type III (xeroderma pigmentosum; XP) is late childhood onset with mild symptoms.[accessedResource: MSH:D003057][accessDate: 2009-11-30]
keratinocyte
CL:0000312
BTO:0000667
Skin cell, of the keratinized layer of epidermis: its characteristic intermediate filament protein is cytokeratin.[accessedResource: BTO:0000667][accessDate: 2009-11-30]
An epidermal cell which synthesizes keratin and undergoes a characteristic change as it moves upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell.[accessedResource: CL:0000312][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
Tomasz Adamusiak
compound treatment design
MO_555
epithelial cell derived cell line
GeneRIF:12782393
GeneRIF:11857752
Plexiform neurofibroma (disorder)[accessedResource: DOID:5151][accessDate: 2009-11-30]
SNOMEDCT:403818001
plexiform neurofibroma
Tomasz Adamusiak
A type of neurofibroma manifesting as a diffuse overgrowth of subcutaneous tissue, usually involving the face, scalp, neck, and chest but occasionally occurring in the abdomen or pelvis. The tumors tend to progress, and may extend along nerve roots to eventually involve the spinal roots and spinal cord. This process is almost always a manifestation of NEUROFIBROMATOSIS 1. (From Adams et al., Principles of Neurology, 6th ed, p1016; J Pediatr 1997 Nov;131(5):678-82)[accessedResource: MSH:D018318][accessDate: 2009-11-30]
SNOMEDCT:41252002
BioportalImporter v.1.2
Plexiform neurofibroma (morphologic abnormality)[accessedResource: DOID:5151][accessDate: 2009-11-30]
An elongated and multinodular neurofibroma, formed when the tumor involves either multiple trunks of a plexus or multiple fascicles of a large nerve, such as the sciatic. Some plexiform neurofibromas resemble a bag of worms, others produce a massive ropy enlargement of the nerve. (Adapted from WHO.)[accessedResource: NCIt:C3797][accessDate: 2009-11-30]
NIFSTD:birnlex_12606
James Malone
MSH:D018318
DOID:5151
NCIt:C3797
Tomasz Adamusiak
submitted
Publication submitted to a journal for publication.
James Malone
CL:0000679
glutamatergic neuron
James Malone
Ele Holloway
NCIH747
bicuculline
Tomasz Adamusiak
Ele Holloway
CHEBI:3092
HCC38
James Malone
transcription profiling
A transcription profiling is an experiment type in which the transcriptome of a biological sample is analysed.
ArrayExpress production team
James Malone
GeneRIF:12297838
GeneRIF:12148114
GeneRIF:12557137
GeneRIF:16339124
GeneRIF:15842357
Liver disorder NOS (disorder)[accessedResource: DOID:409][accessDate: 2009-11-30]
GeneRIF:15661915
GeneRIF:15286165
GeneRIF:11929053
Pathological processes of the LIVER.[accessedResource: MSH:D008107][accessDate: 2009-11-30]
GeneRIF:12006706
GeneRIF:12085365
GeneRIF:15112358
Unspecified disorder of liver[accessedResource: DOID:409][accessDate: 2009-11-30]
GeneRIF:12000722
Hepatic Disorder[accessedResource: NCIt:C3196][accessDate: 2009-11-30]
GeneRIF:15719405
GeneRIF:12794718
NCIt:C3196
GeneRIF:12143056
ICD9:573.9
SNOMEDCT:197375001
GeneRIF:12823590
GeneRIF:12149233
disease of the liver (disorder)[accessedResource: DOID:409][accessDate: 2009-11-30]
SNOMEDCT:235856003
DOID:409
GeneRIF:12823592
Liver Disorder[accessedResource: NCIt:C3196][accessDate: 2009-11-30]
GeneRIF:12724528
Liver disorder NOS[accessedResource: DOID:409][accessDate: 2009-11-30]
SNOMEDCT:197551000
GeneRIF:15969449
GeneRIF:12532447
GeneRIF:11898128
liver disease
Any disease or dysfunction of the liver and the intrahepatic bile ducts.[accessedResource: NCIt:C3196][accessDate: 2009-11-30]
James Malone
GeneRIF:12029628
GeneRIF:15246202
GeneRIF:14624764
BioportalImporter v.1.2
MSH:D008107
GeneRIF:12705907
GeneRIF:11929052
GeneRIF:15235035
GeneRIF:12830005
GeneRIF:15377291
disorder of liver (disorder)[accessedResource: DOID:409][accessDate: 2009-11-30]
GeneRIF:12445411
disease of liver [Ambiguous][accessedResource: DOID:409][accessDate: 2009-11-30]
GeneRIF:15944310
GeneRIF:15774823
GeneRIF:15653097
GeneRIF:11810299
CHEBI:35718
CHEBI:35718
James Malone
BioportalImporter v.1.2
A substance that destroys fungi by suppressing their ability to grow or reproduce. Antifungal drugs differ from industrial fungicides in that they defend against fungi present in human or animal tissues.[accessedResource: CHEBI:35718][accessDate: 2009-11-30]
antifungal drug
GeneRIF:16047841
GeneRIF:14631123
ICD9:710.3
NCIt:C26744
SNOMEDCT:396230008
Dermatopolymyositis, unspecified (disorder)[accessedResource: DOID:10223][accessDate: 2009-11-30]
Dermatomyositis (disorder)[accessedResource: DOID:10223][accessDate: 2009-11-30]
GeneRIF:16097959
Dermatopolymyositis, unspecified[accessedResource: DOID:10223][accessDate: 2009-11-30]
MSH:D003882
Polymyositis with skin involvement[accessedResource: DOID:10223][accessDate: 2009-11-30]
James Malone
dermatomyositis
DOID:10223
BioportalImporter v.1.2
GeneRIF:15752564
A subacute or chronic inflammatory disease of muscle and skin, marked by proximal muscle weakness and a characteristic skin rash. The illness occurs with approximately equal frequency in children and adults. The skin lesions usually take the form of a purplish rash (or less often an exfoliative dermatitis) involving the nose, cheeks, forehead, upper trunk, and arms. The disease is associated with a complement mediated intramuscular microangiopathy, leading to loss of capillaries, muscle ischemia, muscle-fiber necrosis, and perifascicular atrophy. The childhood form of this disease tends to evolve into a systemic vasculitis. Dermatomyositis may occur in association with malignant neoplasms. (From Adams et al., Principles of Neurology, 6th ed, pp1405-6)[accessedResource: MSH:D003882][accessDate: 2009-11-30]
GeneRIF:15146429
SNOMEDCT:203795006
GeneRIF:12147628
James Malone
Ele Holloway
Ramos
NCIt:C35256
BioportalImporter v.1.2
aicardi syndrome
DOID:8461
Aicardi's syndrome (disorder)[accessedResource: DOID:8461][accessDate: 2009-11-30]
James Malone
SNOMEDCT:80651009
Aicardi's syndrome[accessedResource: DOID:8461][accessDate: 2009-11-30]
embryonic frontal ganglion
James Malone
FBbt:00005668
A blood cell especially of an invertebrate animal.[accessedResource: BTO:0000571][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
CL:0000387
BTO:0000571
hemocyte
GeneRIF:12711118
BioportalImporter v.1.2
large cell neuroendocrine carcinoma
SNOMEDCT:128628002
NCIt:C6875
A usually aggressive carcinoma composed of large malignant cells which display neuroendocrine characteristics. It is characterized by the presence of high mitotic activity and necrotic changes. The vast majority of cases are positive for neuron-specific enolase. Representative examples include lung, breast, cervical, and thymic neuroendocrine carcinomas.
[Source: NCI Thesaurus C6875]
James Malone
DOID:5721
Large cell neuroendocrine carcinoma (morphologic abnormality)[accessedResource: DOID:5721][accessDate: 2009-11-30]
GeneRIF:12605092
Tomasz Adamusiak
disease state design
MO_902
James Malone
Ele Holloway
NCIH748
granulocyte
A polymorphonuclear white blood cell with granule-containing cytoplasm.[accessedResource: BTO:0000539][accessDate: 2009-11-30]
A leukocyte with abundant granules in the cytoplasm.[accessedResource: CL:0000094][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CL:0000094
BTO:0000539
HCC70
James Malone
INS-1
Pancreatic beta -cell line of rat origin.[accessedResource: BTO:0002135][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
MCC:0000246
BTO:0002135
CHEBI:53049
Tomasz Adamusiak
Ele Holloway
1-fluoro-2,4-dinitrobenzene
MO_220
ploidy
haploid, diploid, triploid
The number of single sets of chromosomes in the cell or an organism e.g., haploid, diploid, triploid, etc.
Tomasz Adamusiak
Jie Zheng
James Malone
James Malone
BioportalImporter v.1.2
An agent that inhibits protein kinases.[accessedResource: CHEBI:37699][accessDate: 2009-11-30]
protein kinase inhibitor
CHEBI:37699
CHEBI:37699
NCI Metathesaurus: C0038445
stria vascularis
NIFSTD:birnlex_2525
A stria vascularis is part of a cochlea and is the upper part of the spiral ligament of thescala media that contains numerous small blood vessels.
The upper part of the spiral ligament of the scala media that contains numerous small blood vessels;nA layer of vascular tissue consisting of epithelial cells, mesothelial cells, and probably some neuroectoderm; it covers the outer wall of the cochlear duct and is thought to secrete the endolymph.[accessedResource: BTO:0001819][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
BTO:0001819
James Malone
James Malone
Tomasz Adamusiak
UO:0000043
A substance unit equal to 10^[-15] mol.[accessedResource: UO:0000043][accessDate: 2009-11-30]
A femtomole is a substance unit equal to 10^-15 mol.
BioportalImporter v.1.2
fmol[accessedResource: UO:0000043][accessDate: 2009-11-30]
femtomole
Jie Zheng
MO_689
United States Patent 20040023256
translation profiling
A translation profiling is an experiment type in which surface-bound, translationally competent ribosome complexes are used to generate a translation profile for mRNA, which mRNA may be a single molecular species, or a combination of species, including complex mixtures such as those found in the set of mRNAs isolated from a cell or tissue. One or more components of the surface-bound ribosome complex may be labeled at specific positions to permit analysis of multiple or single molecules for determination of ribosomal conformational changes and translation kinetics. Translation profiles are used as the basis for comparison of an mRNA or set of mRNA species. The translation profile can be used to determine such characteristics as kinetics of initiation, kinetic of elongation, identity of the polypeptide product, and the like. Analysis of translation profiles may be used to determine differential gene expression, optimization of mRNA sequences for expression, screening drug candidates for an effect on translation.
James Malone
GeneRIF:15845485
sepsis
James Malone
GeneRIF:12947340
GeneRIF:12052963
GeneRIF:11770048
GeneRIF:12946935
GeneRIF:15131465
GeneRIF:16260097
GeneRIF:12480554
GeneRIF:15383576
GeneRIF:12218141
GeneRIF:12219031
GeneRIF:14525968
GeneRIF:14659593
GeneRIF:12117955
GeneRIF:15030585
GeneRIF:12198614
GeneRIF:15645239
GeneRIF:12959973
GeneRIF:12093893
GeneRIF:11876758
GeneRIF:12472775
GeneRIF:15717270
GeneRIF:15128822
GeneRIF:12031601
systemic infection[accessedResource: DOID:2288][accessDate: 2009-11-30]
Septicemia[accessedResource: NCIt:C3364][accessDate: 2009-11-30]
SNOMEDCT:91302008
GeneRIF:15634936
GeneRIF:16239554
GeneRIF:15124023
GeneRIF:14688199
GeneRIF:12946943
Systemic inflammatory response syndrome with a proven or suspected infectious etiology. When sepsis is associated with organ dysfunction distant from the site of infection, it is called severe sepsis. When sepsis is accompanied by HYPOTENSION despite adequate fluid infusion, it is called SEPTIC SHOCK.[accessedResource: MSH:D018805][accessDate: 2009-11-30]
GeneRIF:15947070
GeneRIF:15557190
GeneRIF:15650061
GeneRIF:12219025
GeneRIF:15155262
GeneRIF:12296849
GeneRIF:15504976
GeneRIF:12643861
GeneRIF:15760677
GeneRIF:12615620
GeneRIF:12147224
GeneRIF:14991091
GeneRIF:12517942
GeneRIF:15563579
GeneRIF:15834314
GeneRIF:15845478
GeneRIF:12022759
GeneRIF:15244040
GeneRIF:15634264
GeneRIF:15201701
GeneRIF:14993594
GeneRIF:15211109
GeneRIF:12055255
GeneRIF:15472172
GeneRIF:15328161
GeneRIF:12006369
GeneRIF:15489631
GeneRIF:12117983
The presence of pathogenic microorganisms in the blood stream causing a rapidly progressing systemic reaction that may lead to shock. Symptoms include fever, chills, tachycardia, and increased respiratory rate. It is a medical emergency that requires urgent medical attention.[accessedResource: NCIt:C3364][accessDate: 2009-11-30]
GeneRIF:15834309
GeneRIF:15803053
GeneRIF:15240146
GeneRIF:15545825
GeneRIF:11774822
GeneRIF:15034057
GeneRIF:15614130
GeneRIF:12027409
NCIt:C3364
GeneRIF:15890324
GeneRIF:12604029
GeneRIF:15579460
GeneRIF:15545827
GeneRIF:15489642
GeneRIF:14517747
GeneRIF:12218091
GeneRIF:12593995
A disease of infectious agent resulting from the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions. These pathogens are able to cause disease in animals and/or plants. Infectious pathologies are usually qualified as contagious disease (also called communicable disease) due to their potentiality of transmission from one person or species to another.[accessedResource: DOID:2288][accessDate: 2009-11-30]
MSH:D018805
GeneRIF:12032273
GeneRIF:15129283
GeneRIF:12496437
GeneRIF:15585684
BioportalImporter v.1.2
GeneRIF:15319291
GeneRIF:12571074
GeneRIF:16207247
GeneRIF:11956648
GeneRIF:15050965
GeneRIF:15733912
GeneRIF:12869495
GeneRIF:15187138
GeneRIF:12721157
GeneRIF:14966572
GeneRIF:11776298
GeneRIF:14660484
GeneRIF:15155612
GeneRIF:14634136
GeneRIF:15554961
MO_791
Tomasz Adamusiak
BioportalImporter v.1.2
Temperature is a physical quality of the thermal energy of a system.
PATO:0000146
Jie Zheng
A physical quality of the thermal energy of a system.[accessedResource: PATO:0000146][accessDate: 2009-11-30]
temperature
James Malone
James Malone
Ele Holloway
MOLT16
embryonic foregut sensory structure
FBbt:00005616
James Malone
SNOMEDCT:404053004
alveolar rhabdomyosarcoma
James Malone
GeneRIF:15140004
GeneRIF:11846302
Alveolar rhabdomyosarcoma (disorder)[accessedResource: DOID:4051][accessDate: 2009-11-30]
GeneRIF:16157701
MSH:D018232
BioportalImporter v.1.2
A form of RHABDOMYOSARCOMA occurring mainly in adolescents and young adults, affecting muscles of the extremities, trunk, orbital region, etc. It is extremely malignant, metastasizing widely at an early stage. Few cures have been achieved and the prognosis is poor. "Alveolar" refers to its microscopic appearance simulating the cells of the respiratory alveolus. (Holland et al., Cancer Medicine, 3d ed, p2188)[accessedResource: MSH:D018232][accessDate: 2009-11-30]
SNOMEDCT:63449009
A rapidly growing malignant mesenchymal neoplasm. It is characterized by the presence of round cells with myoblastic differentiation and a fibrovascular stroma resembling an alveolar growth pattern. The tumor usually presents in the extremities.[accessedResource: NCIt:C3749][accessDate: 2009-11-30]
DOID:4051
Alveolar rhabdomyosarcoma (morphologic abnormality)[accessedResource: DOID:4051][accessDate: 2009-11-30]
NCIt:C3749
GeneRIF:12039929
James Malone
Ele Holloway
S1
dose response design
Tomasz Adamusiak
MO_485
The process of marking a material in some way for experimental purposes. E.g. the labelling of a nucleic acid with biotin in a microarray experiment
Tomasz Adamusiak
Jie Zheng
James Malone
MO_471
labelling
HEK-293H
James Malone
Jie Zheng
Tomasz Adamusiak
substantia nigra and ventral tegmental area
James Malone
HEK293
James Malone
Ele Holloway
NCIH810
MO_183
growth condition
Tomasz Adamusiak
Jie Zheng
James Malone
A role that a material entity can play which enables particular conditions used to grow organisms or parts of the organism. This includes isolated environments such as cultures and open environments such as field studies.
CHEBI:30351
Tomasz Adamusiak
Ele Holloway
2,2'-bipyridine
James Malone
BioportalImporter v.1.2
ZEA:0015085
PO:0020136
male inflorescence
Publication published in a journal.
Tomasz Adamusiak
published
A drug used to prevent nausea or vomiting. An antiemetic may act by a wide range of mechanisms: it might affect the medullary control centers (the vomiting center and the chemoreceptive trigger zone) or affect the peripheral receptors.[accessedResource: CHEBI:50919][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:50919
CHEBI:50919
antiemetic
kidney derived cell line
derived mass unit
A dervied mass unit is a derived unit which is a measure of the the amount of matter/energy of a physical object, derived from the base unit for mass.
James Malone
PERSON: James Malone
HEK293T
James Malone
HOS
James Malone
Ele Holloway
A precursor cell destined to differentiate into smooth muscle myocytes.[accessedResource: CL:0000514][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
CL:0000514
smooth muscle myoblast
adult foregut precursor
FBbt:00005611
James Malone
SUM52PE
James Malone
organism part comparison design
MO_953
Tomasz Adamusiak
James Malone
Ele Holloway
SK-MEL-2
8-(3-chlorostyryl) caffeine
Caffeine substituted at its 8-position by an (E)-3-chlorostyryl group.[accessedResource: CHEBI:53115][accessDate: 2009-11-30]
Ele Holloway
8-CSC
1,3,7-trimethyl-8-(3-chlorostyryl)xanthine
CSC
James Malone
8-[(E)-2-(3-chlorophenyl)ethenyl]-1,3,7-trimethyl-3,7-dihydro-1H-purine-2,6-dione[accessedResource: CHEBI:53115][accessDate: 2009-11-30]
CHEBI:53115
BioportalImporter v.1.2
James Malone
EHDAA:9144
MA:0000347
A fleshy movable process of the floor of the mouths of most vertebrates that bears sensory end organs and small glands and functions especially in taking and swallowing food and in humans as a speech organ.[accessedResource: BTO:0001385][accessDate: 2009-11-30]
SAEL:109
MAT:0000040
EMAPA:18870
EV:0100058
XAO:0000446
FMAID:54640
BioportalImporter v.1.2
BTO:0001385
tongue
An anatomical modifier is a quality which inheres in an organism part.
anatomical modifier
James Malone
MAT:0000476
D341Med
James Malone
Ele Holloway
James Malone
BioportalImporter v.1.2
female inflorescence
ZEA:0015084
PO:0020126
James Malone
BioportalImporter v.1.2
A fluorinated steroid that has formula C22H29FO5.[accessedResource: CHEBI:41879][accessDate: 2009-11-30]
CHEBI:41879
9-fluoro-11beta,17,21-trihydroxy-16alpha-methylpregna-1,4-diene-3,20-dione[accessedResource: CHEBI:41879][accessDate: 2009-11-30]
dexamethasone
James Malone
Tomasz Adamusiak
C[accessedResource: UO:0000027][accessDate: 2009-11-30]
degree celsius
Jie Zheng
MO_980
BioportalImporter v.1.2
degree centigrade
A temperature derived unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K.[accessedResource: UO:0000027][accessDate: 2009-11-30]
UO:0000027
Degree celsius is a temperature derived unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K.
James Malone
Ele Holloway
NCIH1666
CHEBI:17303
morphine
James Malone
Ele Holloway
BioportalImporter v.1.2
A morphinane alkaloid that has formula C17H19NO3.[accessedResource: CHEBI:17303][accessDate: 2009-11-30]
17-methyl-7,8-didehydro-4,5alpha-epoxymorphinan-3,6alpha-diol[accessedResource: CHEBI:17303][accessDate: 2009-11-30]
L3 larva
WBls:0000035
The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch.
FMAID:87217
descending thoracic aorta
Tomasz Adamusiak
Jie Zheng
minute
James Malone
BioportalImporter v.1.2
min[accessedResource: UO:0000031][accessDate: 2009-11-30]
A time unit which is equal to 60 seconds.[accessedResource: UO:0000031][accessDate: 2009-11-30]
A minute is a derived time unit which is equal to 60 seconds.
UO:0000031
HeLa
James Malone
Tomasz Adamusiak
BioportalImporter v.1.2
A convenient source of human endothelial cells are those that line the large vein in the umbilical cord which is usually discarded together with the placenta after childbirth. The cells can be removed as a fairly pure suspension by mild enzymatic treatment of the vein followed by some mechanical distraction and will grow relatively easily in culture, retaining their differentiated characteristics for several passages.[accessedResource: BTO:0001949][accessDate: 2009-11-30]
HUVEC cell
BTO:0001949
SUM44PE
James Malone
James Malone
FBbt:00005646
adult hindgut precursor
James Malone
Ele Holloway
HPAC
protein kinase C inhibitor
CHEBI:37700
CHEBI:37700
James Malone
Tomasz Adamusiak
MO_841
organism status design
James Malone
Ele Holloway
NCIH1650
FBbt:00001433
embryonic ganglion mother cell
James Malone
BioportalImporter v.1.2
Any ganglion mother cell (FBbt:00005149) that is part of some embryo (FBbt:00000052).[accessedResource: FBbt:00001433][accessDate: 2009-11-30]
James Malone
MAT:0000043
gut[accessedResource: MAT:0000043][accessDate: 2009-11-30]
intestines[accessedResource: MAT:0000043][accessDate: 2009-11-30]
adult alimentary canal[accessedResource: MAT:0000043][accessDate: 2009-11-30]
FMAID:7199
EHDAA:518
WBbt:0005772
intestine
The fluid-feeding habit of adult mosquitoes is reflected in the structure and ultrastructure of the alimentary canal.[accessedResource: TGMA:0001819][accessDate: 2009-11-30]
Bowel[accessedResource: FMAID:7199][accessDate: 2009-11-30]
XAO:0000129
MFO:0003040
BTO:0000648
MA:0000328
BioportalImporter v.1.2
TGMA:0001819
TADS:0000165
EV:0100071
TAO:0001338
ZFA:0001338
AAO:0000246
The tubular part of the alimentary canal that extends from the stomach to the anus.[accessedResource: BTO:0000648][accessDate: 2009-11-30]
SAEL:55
adrenal neuroblast
James Malone
CL:0000337
neuroblast (sensu Vertebrata)
dibenzazepines
CHEBI:47804
James Malone
Ele Holloway
BioportalImporter v.1.2
dibenzoazepine[accessedResource: CHEBI:47804][accessDate: 2009-11-30]
dibenzazepine
Jie Zheng
James Malone
Tomasz Adamusiak
degree fahrenheit
A temperature derived unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.[accessedResource: UO:0000195][accessDate: 2009-11-30]
UO:0000195
BioportalImporter v.1.2
MO_812
F[accessedResource: UO:0000195][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:53003
naphthalene-1,5-diamine
A naphthalenediamine compound having amino substituents in the 1- and 5-positions.[accessedResource: CHEBI:53003][accessDate: 2009-11-30]
"1,5-naphthalenediamine"
http://www.arabidopsis.org/servlets/TairObject?id=1005158695&type=germplasm
CS57671 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158695&type=germplasm
James Malone
CS57671
D283Med
James Malone
Ele Holloway
GeneRIF:12893022
GeneRIF:15879687
GeneRIF:16088850
Coronary Disease[accessedResource: NCIt:C26732][accessDate: 2009-11-30]
GeneRIF:14747236
GeneRIF:12588779
GeneRIF:15607533
GeneRIF:12074827
An imbalance between myocardial functional requirements and the capacity of the CORONARY VESSELS to supply sufficient blood flow. It is a form of MYOCARDIAL ISCHEMIA (insufficient blood supply to the heart muscle) caused by a decreased capacity of the coronary vessels.[accessedResource: MSH:D003327][accessDate: 2009-11-30]
GeneRIF:12151850
GeneRIF:11859854
GeneRIF:15598085
GeneRIF:14695459
GeneRIF:12362314
GeneRIF:12594357
GeneRIF:11889198
Coronary Artery Disease[accessedResource: NCIt:C26732][accessDate: 2009-11-30]
BioportalImporter v.1.2
Narrowing of the coronary arteries due to fatty deposits inside the arterial walls.[accessedResource: NCIt:C26732][accessDate: 2009-11-30]
DOID:3393
GeneRIF:12151853
GeneRIF:15920035
GeneRIF:12588754
CHD
GeneRIF:12801611
GeneRIF:15199365
GeneRIF:12207101
GeneRIF:12879153
GeneRIF:15887860
GeneRIF:15585218
GeneRIF:15585208
GeneRIF:15692099
GeneRIF:15784171
MSH:D003327
GeneRIF:12117730
GeneRIF:12925562
GeneRIF:12818402
NCIt:C26732
GeneRIF:15837082
GeneRIF:12666851
GeneRIF:15877284
GeneRIF:16159602
James Malone
GeneRIF:15585206
GeneRIF:14576201
Coronary heart disease is a cardiovascular disease in which there is a failure of coronary circulation to supply adequate circulation to cardiac muscle and surrounding tissue.
GeneRIF:12030385
GeneRIF:11947914
GeneRIF:15825968
GeneRIF:14592833
GeneRIF:15379752
GeneRIF:12104085
GeneRIF:11972304
GeneRIF:11916624
Coronary Heart Disease
GeneRIF:15193812
GeneRIF:16113535
GeneRIF:15454272
GeneRIF:12408999
CHD - Coronary heart disease[accessedResource: DOID:3393][accessDate: 2009-11-30]
GeneRIF:12842840
GeneRIF:12676816
GeneRIF:11919305
GeneRIF:15653107
GeneRIF:11862316
GeneRIF:14967821
GeneRIF:15920055
James Malone
Ele Holloway
NCIH1651
desferrioxamine B
BioportalImporter v.1.2
An acyclic desferrioxamine that has formula C25H48N6O8.[accessedResource: CHEBI:4356][accessDate: 2009-11-30]
CHEBI:4356
N'-{5-[acetyl(hydroxy)amino]pentyl}-N-(5-{4-[(5-aminopentyl)(hydroxy)amino]-4-oxobutanamido}pentyl)-N-hydroxybutanediamide[accessedResource: CHEBI:4356][accessDate: 2009-11-30]
1.8
BioportalImporter v.1.2
obsolete_phyllid
BTO:0000713
MAT:0000276
James Malone
true
A lateral outgrowth from a plant stem that is typically a flattened expanded variably shaped greenish organ, constitutes a unit of the foliage, and functions primarily in food manufacture by photosynthesis.[accessedResource: BTO:0000713][accessDate: 2009-11-30]
duplication
leaf of a moss or liverwort[accessedResource: MAT:0000276][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
A jasmonate ester that has formula C13H20O3.[accessedResource: CHEBI:15929][accessDate: 2009-11-30]
methyl (-)-jasmonate
CHEBI:15929
methyl {(1R,2R)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl}acetate[accessedResource: CHEBI:15929][accessDate: 2009-11-30]
postmenopausal
James Malone
NCI Thesaurus:C0232970
FMAID:3768
aortic arch
Arch of aorta[accessedResource: FMAID:3768][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
James Malone
BioportalImporter v.1.2
An hour is a derived time unit which is equal to 3600 seconds or 60 minutes.
A time unit which is equal to 3600 seconds or 60 minutes.[accessedResource: UO:0000032][accessDate: 2009-11-30]
UO:0000032
h[accessedResource: UO:0000032][accessDate: 2009-11-30]
hour
hippocampus CA1
birn_anat:birnlex_1197
MA:0000950
Tomasz Adamusiak
James Malone
FBbt:00005786
The most important structure of the insect's excretory organ, which may comprise cystiform or labyrinthine highly versatile tubules having their outlet into the initial section of the rectum.[accessedResource: FBbt:00005786][accessDate: 2009-11-30]
Malpighian tubule
MAT:0000123
There are five Malpighian tubules that are attached to the alimentary canal posteriorly.[accessedResource: TGMA:0001038][accessDate: 2009-11-30]
FBbt:00005725
TGMA:0001038
BTO:0000810
Any of a group of long blind vessels opening into the posterior part of the alimentary canal in most insects and some other arthropods and functioning primarily as excretory organs.[accessedResource: BTO:0000810][accessDate: 2009-11-30]
TADS:0000163
BioportalImporter v.1.2
HPAFII
James Malone
Ele Holloway
Tomasz Adamusiak
sex design
MO_575
James Malone
HepaRG
CHEBI:23527
cytochalasin B
BTO:0001295
skeletal system of head[accessedResource: MAT:0000340][accessDate: 2009-11-30]
EHDAA:6029
MAT:0000340
cranial skeleton[accessedResource: MAT:0000340][accessDate: 2009-11-30]
1: The skull of a vertebrate.n2: The portion of the skull enclosing the brain; the braincase.[accessedResource: BTO:0001295][accessDate: 2009-11-30]
cranium
James Malone
The sclerotized skull-like part of the head.[accessedResource: TGMA:0000003][accessDate: 2009-11-30]
FMAID:87596
gustatory system
EMAPA:17680
TAO:0000737
ZFA:0000737
BioportalImporter v.1.2
TGMA:0000003
craniofacial skeleton bone
MA:0000316
NCIH1703
James Malone
Ele Holloway
James Malone
Ele Holloway
NCIH69
James Malone
Ele Holloway
BioportalImporter v.1.2
(1aR,1bS,4aR,7aS,7bS,8R,9R,9aS)-9a-acetoxy-4a,7b-dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1a,1b,4,4a,5,7a,7b,8,9,9a-decahydro-1H-cyclopropa[3,4]benzo[1,2-e]azulen-9-yl tetradecanoate[accessedResource: CHEBI:37537][accessDate: 2009-11-30]
phorbol 13-acetate 12-myristate
CHEBI:37537
A phorbol ester that has formula C36H56O8.[accessedResource: CHEBI:37537][accessDate: 2009-11-30]
A dorsal fin
MAT:0000483
James Malone
geometric modifier
A geometric modifier is an anatomical modifier which describes some quality about the geometric position of some organism part.
James Malone
Ele Holloway
DBTRG05MG
James Malone
leaf vascular tissue
CHEBI:25016
lead
James Malone
Ele Holloway
BioportalImporter v.1.2
A carbon group element that has formula Pb.[accessedResource: CHEBI:25016][accessDate: 2009-11-30]
Thoracic part of aorta[accessedResource: FMAID:3786][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
thoracic aorta
FMAID:3786
amol[accessedResource: UO:0000044][accessDate: 2009-11-30]
MO_977
attomole
A substance unit equal to 10^[-18] mol.[accessedResource: UO:0000044][accessDate: 2009-11-30]
Tomasz Adamusiak
James Malone
Jie Zheng
An attomole is a substance unit equal to 10^-18 mol.
UO:0000044
BioportalImporter v.1.2
species design
MO_675
Tomasz Adamusiak
blood cell
CL:0000081
Tomasz Adamusiak
BioportalImporter v.1.2
A cell found predominately in the blood.[accessedResource: CL:0000081][accessDate: 2009-11-30]
James Malone
HepG2
adult midgut precursor
FBbt:00000449
James Malone
HSSultan
James Malone
Ele Holloway
TADS:0000551
NIFSTD:birnlex_1153
The array of photoreceptors & the cells that support them in a compound eye.[accessedResource: FBbt:00004200][accessDate: 2009-11-30]
Inner layer of eyeball[accessedResource: FMAID:58301][accessDate: 2009-11-30]
FBbt:00004200
XAO:0000009
EV:0100348
retina
James Malone
EMAPA:17168
Tomasz Adamusiak
MFO:0003600
The sensory membrane that lines the eye, is composed of several layers including one containing the rods and cones, and functions as the immediate instrument of vision by receiving the image formed by the lens and converting it into chemical and nervous signals which reach the brain by way of the optic nerve.[accessedResource: BTO:0001175][accessDate: 2009-11-30]
MA:0000276
MAT:0000142
FMAID:58301
BioportalImporter v.1.2
TAO:0000152
EHDAA:4757
ZFA:0000152
BTO:0001175
Tunica interna of eyeball[accessedResource: FMAID:58301][accessDate: 2009-11-30]
SAEL:91
Layer of wall of eyeball which is continuous with optic nerve.[accessedResource: FMAID:58301][accessDate: 2009-11-30]
A cysteine that has formula C3H7NO2S.[accessedResource: CHEBI:17561][accessDate: 2009-11-30]
CHEBI:17561
L-cysteine[accessedResource: CHEBI:17561][accessDate: 2009-11-30]
cysteine
BioportalImporter v.1.2
James Malone
T47D
James Malone
Ele Holloway
BioportalImporter v.1.2
A retinoic acid that has formula C20H28O2.[accessedResource: CHEBI:6067][accessDate: 2009-11-30]
(2Z,4E6E,8E)-3,7-dimethyl-9-(2,6,6-trimethylcyclohex-1-en-1-yl)nona-2,4,6,8-tetraenoic acid[accessedResource: CHEBI:6067][accessDate: 2009-11-30]
isotretinoin
CHEBI:6067
James Malone
Ele Holloway
NCIH1694
James Malone
Ele Holloway
DB
MAT:0000477
tissue modifier
James Malone
A tissue modifier is an anatomical modifier which describes some quality about a tissue.
A nasal placode
An organic heteropentacyclic compound that has formula C23H24O8.[accessedResource: CHEBI:52289][accessDate: 2009-11-30]
wortmannin
CHEBI:52289
(1S,6bR,9aS,11R,11bR)-9a,11b-dimethyl-1-[(methyloxy)methyl]-3,6,9-trioxo-1,6,6b,7,8,9,9a,10,11,11b-decahydro-3H-furo[4,3,2-de]indeno[4,5-h]isochromen-11-yl acetate[accessedResource: CHEBI:52289][accessDate: 2009-11-30]
James Malone
Ele Holloway
BioportalImporter v.1.2
James Malone
Ele Holloway
NCIH716
Descending abdominal aorta[accessedResource: FMAID:3789][accessDate: 2009-11-30]
BioportalImporter v.1.2
Jie Zheng
Abdominal part of aorta[accessedResource: FMAID:3789][accessDate: 2009-11-30]
Pars abdominalis aortae[accessedResource: FMAID:3789][accessDate: 2009-11-30]
abdominal aorta
FMAID:3789
Tomasz Adamusiak
UO:0000029
MO_795
A microsecond is a time unit which is equal to one millionth of a second or 10^-6 s.
Jie Zheng
us[accessedResource: UO:0000029][accessDate: 2009-11-30]
A time unit which is equal to one millionth of a second or 10^[-6] s.[accessedResource: UO:0000029][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
µs
microsecond
James Malone
BTO:0000052
stomatal complex
James Malone
MAT:0000346
PO:0002000
The epidermal complex consisting of two guard cells and the pore between them.[accessedResource: BTO:0000052][accessDate: 2009-11-30]
BioportalImporter v.1.2
A pair of neurohemal organs located on the walls of the aorta just behind the brain. The corpora cardiaca release their store of PTTH only after they receive a signal from neurosecretory cells in the brain.[accessedResource: BTO:0000432][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
corpus cardiacum
FBbt:00005799
BTO:0000432
adult
EV:0300070
OntologyMappingImporter following MAT:0000403
WBIs:0000041
NIFSTD:birnlex_681
MAT:0000403
James Malone
EVM:2990028
Tomasz Adamusiak
XAO:1000009
NIFSTD:birnlex_228
FBdv:00005369
CS57710 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158734&type=germplasm
CS57710
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158734&type=germplasm
James Malone
BioportalImporter v.1.2
loess transformation
OBI_0200071
A loess transformation is a data transformation that takes as input a collection of real number pairs (x, y) and, after performing (one or more) loess fittings, utilizes the resulting curves to transform each (x, y) in the input into (x, y-f(x)) where f(x) is one of the fitted curves.[accessedResource: OBI_0200071][accessDate: 2009-11-30]
(22S,25S)-5alpha-spirosolan-3beta-ol[accessedResource: CHEBI:9629][accessDate: 2009-11-30]
tomatidine
BioportalImporter v.1.2
CHEBI:9629
HH
James Malone
Ele Holloway
phenotype is synonymous with quality
true
obsolete_phenotypic factor
line
MO_859
obsolete_strain
Jie Zheng
this class was originally 'strain or line'
1.8
A population or type of organisms that is geneticaly different from others of the same species and possessing a set of defined characteristics.
Tomasz Adamusiak
true
consolodated into organism hierarchy
James Malone
EHDAA:1900
James Malone
EV:0100020
Heart Ventricle[accessedResource: NCIt:C12730][accessDate: 2009-11-30]
A chamber of the heart which receives blood from a corresponding atrium and from which blood is forced into the arteries.[accessedResource: BTO:0000862][accessDate: 2009-11-30]
MAT:0000497
General anatomical term which refers to a chamber of an organ with cavitated organ parts. Examples: right ventricle of heart, lateral ventricle of brain.[accessedResource: FMAID:82553][accessDate: 2009-11-30]
BioportalImporter v.1.2
ZFA:0000009
Cardiac Ventricles[accessedResource: NCIt:C12730][accessDate: 2009-11-30]
FMAID:82553
MA:0000091
NCIt:C12730
ventricle
Ventricles, Heart[accessedResource: NCIt:C12730][accessDate: 2009-11-30]
MFO:0080920
Cardiac Ventricle[accessedResource: NCIt:C12730][accessDate: 2009-11-30]
The lower right and left chambers of the heart. The right pumps venous blood into the lungs and the left pumps oxygenated blood into the systemic arterial circulation. (MeSH)[accessedResource: NCIt:C12730][accessDate: 2009-11-30]
EMAPA:17331
BTO:0000862
TAO:0000009
Malme3M
James Malone
Ele Holloway
http://www.arabidopsis.org/servlets/TairObject?id=1005158620&type=germplasm
CS57596
James Malone
CS57596 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158620&type=germplasm
James Malone
RAW264.7
James Malone
Ele Holloway
HMCB
ICD9:171.8
SNOMEDCT:269469005
James Malone
Connective Tissue Sarcoma[accessedResource: NCIt:C9306][accessDate: 2009-11-30]
Sarcoma of the Soft Tissue and Bone[accessedResource: NCIt:C9118][accessDate: 2009-11-30]
Malignant Neoplasm of Soft Tissue[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
ICD9:171.6
GeneRIF:12435619
ICD9:171.7
Soft Tissue Sarcoma[accessedResource: NCIt:C9306][accessDate: 2009-11-30]
Malignant Soft Tissue Neoplasm[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
GeneRIF:12112526
Malignant Tumor of the Soft Tissue[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
GeneRIF:15809709
SNOMEDCT:187985009
GeneRIF:12539045
A usually aggressive malignant mesenchymal cell tumor most commonly arising from muscle, fat, fibrous tissue, bone, cartilage, and blood vessels. Sarcomas occur in both children and adults. The prognosis depends largely on the degree of differentiation (grade) of the tumor. Representative subtypes are liposarcoma, leiomyosarcoma, osteosarcoma, and chondrosarcoma.
[Source: NCI Thesaurus C9118]
Type of cancer of the bone, cartilage, fat, muscle, blood vessels, or other connective or supportive tissue.
GeneRIF:14507652
GeneRIF:14612455
NCIt:C9306
Malignant Tumor of Soft Tissue[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
Malignant Neoplasm of the Soft Tissue[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
SNOMEDCT:189764008
Malignant Soft Tissue Tumor[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
ICD9:171.0
GeneRIF:12610779
BioportalImporter v.1.2
Sarcoma of Soft Tissue[accessedResource: NCIt:C9306][accessDate: 2009-11-30]
DOID:1115
ICD9:171.5
GeneRIF:16154137
Sarcoma of the Soft Tissue[accessedResource: NCIt:C9306][accessDate: 2009-11-30]
Sarcoma of Soft Tissue and Bone[accessedResource: NCIt:C9118][accessDate: 2009-11-30]
GeneRIF:15018431
GeneRIF:11953898
ICD9:171.9
GeneRIF:15201968
ICD9:171.2
ICD9:171
GeneRIF:16327442
GeneRIF:15710230
GeneRIF:15716602
ICD9:171.4
A malignant mesenchymal neoplasm arising exclusively from the soft tissues. Representative examples include soft tissue sarcoma, extraosseous Ewing sarcoma/peripheral primitive neuroectodermal tumor, and malignant hemangiopericytoma.[accessedResource: NCIt:C4867][accessDate: 2009-11-30]
NCIt:C4867
GeneRIF:14710346
NCIt:C9118
SNOMEDCT:2424003
sarcoma
ICD9:171.3
CHEBI:50629
James Malone
BioportalImporter v.1.2
A cyclooxygenase inhibitor with specificity for cyclooxygenase 2.[accessedResource: CHEBI:50629][accessDate: 2009-11-30]
cyclooxygenase 2 inhibitor
CHEBI:50629
BioportalImporter v.1.2
fludrocortisone
A mineralocorticoid that has formula C21H29FO5.[accessedResource: CHEBI:50885][accessDate: 2009-11-30]
9-fluoro-11beta,17,21-trihydroxypregn-4-ene-3,20-dione[accessedResource: CHEBI:50885][accessDate: 2009-11-30]
CHEBI:50885
paraventricular nucleus
James Malone
Ele Holloway
GM11830
James Malone
die swap replicate
MO_901
A die swap replicate is a replicate role which is borne by one of a pair of replicate assays in which LabeledExtracts derived from the same BioMaterial used for both assays (e.g., a hybridization or a 2-D gel run) differ only in that the dyes used for labeling have been reversed, e.g., assay 1: A-Cy3 vs. B-Cy5, and assay 2: A-Cy5 vs. B-Cy3. The purpose of using dye-swap replicate pairs is to assess or remove dye-specific biases from the combined experimental results.
James Malone
Tomasz Adamusiak
Jie Zheng
James Malone
NIFSTD:birnlex_2087
MO_192
phenotype
The observable form taken by some character (or group of characters) in an individual or an organism, excluding pathology and disease. The detectable outward manifestations of a specific genotype.
NIFSTD:birnlex_1672
corpus striatum
James Malone
Striatum[accessedResource: NCIt:C12448][accessDate: 2009-11-30]
Striate Body[accessedResource: NCIt:C12448][accessDate: 2009-11-30]
Either of a pair of masses of nervous tissue within the brain that contain two large nuclei of gray matter separated by sheets of white matter.[accessedResource: BTO:0001311][accessDate: 2009-11-30]
dorsal striatum
NCIt:C12448
BioportalImporter v.1.2
BTO:0001311
Striped gray and white matter consisting of the neostriatum and paleostriatum (globus pallidus). It is located in front of and lateral to the thalamus in each cerebral hemisphere. The gray substance is made up of the caudate nucleus and the lentiform nucleus. The white matter is the internal capsule. (MeSH)[accessedResource: NCIt:C12448][accessDate: 2009-11-30]
NIFSTD:nlx_anat_20090201
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
PATO:0001338
mixed sex population
The total number of individuals inhabiting a particular region or area.
A biological sex quality inhering in a population of multiple sexes.[accessedResource: PATO:0001338][accessDate: 2009-11-30]
HEL9217
James Malone
Ele Holloway
true
obsolete_strain factor
James Malone
1.8
consolodated all strains into organism hierarchy
cardiac muscle cell[accessedResource: CL:0000746][accessDate: 2009-11-30]
cardiomyocyte[accessedResource: CL:0000746][accessDate: 2009-11-30]
NIFSTD:sao658938043
BioportalImporter v.1.2
Tomasz Adamusiak
CL:0000746
James Malone
A heart muscle cell.[accessedResource: BTO:0001539][accessDate: 2009-11-30]
BTO:0001539
cardiac myocyte
Adrenergic uptake inhibitors are drugs that block the transport of adrenergic transmitters into axon terminals or into storage vesicles within terminals. The tricyclic antidepressants and amphetamines are among the therapeutically important drugs that may act via inhibition of adrenergic transport. Many of these drugs also block transport of serotonin.[accessedResource: CHEBI:35640][accessDate: 2009-11-30]
CHEBI:35640
BioportalImporter v.1.2
CHEBI:35640
adrenergic uptake inhibitor
James Malone
GeneRIF:12707933
GeneRIF:14623370
GeneRIF:12643442
GeneRIF:15211634
GeneRIF:15194506
GeneRIF:15337252
GeneRIF:12960753
GeneRIF:16005437
GeneRIF:15768050
GeneRIF:12762588
GeneRIF:12911617
GeneRIF:15820319
GeneRIF:16176390
GeneRIF:16139171
GeneRIF:12707930
GeneRIF:14572619
GeneRIF:12210271
GeneRIF:12851458
GeneRIF:15670788
GeneRIF:15707951
GeneRIF:15719395
GeneRIF:15248869
GeneRIF:16027740
GeneRIF:12476325
GeneRIF:15340354
GeneRIF:12111645
GeneRIF:12815739
GeneRIF:12824740
ICD9:295.90
GeneRIF:12808428
GeneRIF:15739191
GeneRIF:15768049
GeneRIF:11880198
GeneRIF:12145742
GeneRIF:15276698
GeneRIF:12497607
GeneRIF:14767724
GeneRIF:12555232
GeneRIF:15838535
GeneRIF:14960334
GeneRIF:15364420
GeneRIF:15318035
GeneRIF:15756053
GeneRIF:15124027
GeneRIF:14623375
GeneRIF:12399140
GeneRIF:11922883
GeneRIF:15041036
GeneRIF:14623369
GeneRIF:11986986
GeneRIF:12746393
GeneRIF:12364586
GeneRIF:14684836
ICD9:295.82
GeneRIF:15522253
GeneRIF:12624948
GeneRIF:12782967
GeneRIF:14699440
GeneRIF:11840505
GeneRIF:12874601
GeneRIF:11959925
GeneRIF:16044173
GeneRIF:15231749
GeneRIF:15211624
GeneRIF:11979062
GeneRIF:15261699
GeneRIF:15184063
GeneRIF:14973229
GeneRIF:12799614
GeneRIF:16139173
GeneRIF:14532331
GeneRIF:12149917
GeneRIF:12207142
GeneRIF:15532024
GeneRIF:15545978
GeneRIF:15781144
GeneRIF:14684465
GeneRIF:15184103
GeneRIF:15793701
GeneRIF:12363390
GeneRIF:16223700
GeneRIF:15705354
GeneRIF:15913960
GeneRIF:14732600
GeneRIF:15961543
GeneRIF:15564895
GeneRIF:12921913
Tomasz Adamusiak
GeneRIF:12627459
GeneRIF:12082567
GeneRIF:15362566
GeneRIF:12724619
GeneRIF:12454527
GeneRIF:12496953
GeneRIF:11807413
GeneRIF:12815737
GeneRIF:15162166
GeneRIF:14699426
GeneRIF:15913964
GeneRIF:12815738
GeneRIF:15363474
GeneRIF:14755437
GeneRIF:16056147
GeneRIF:16046005
GeneRIF:12915235
GeneRIF:15953671
GeneRIF:15917270
GeneRIF:14729827
GeneRIF:11959426
ICD9:295.9
GeneRIF:15318034
GeneRIF:12476323
ICD9:295.80
GeneRIF:11920853
GeneRIF:15121479
GeneRIF:15338334
GeneRIF:15211626
GeneRIF:12223255
GeneRIF:16026766
GeneRIF:15274031
GeneRIF:15091315
GeneRIF:11986985
GeneRIF:12090821
GeneRIF:15647480
GeneRIF:15653269
GeneRIF:15303101
GeneRIF:12808432
GeneRIF:15329799
GeneRIF:15882913
GeneRIF:11803524
GeneRIF:15197397
GeneRIF:16044171
GeneRIF:15318033
GeneRIF:15671176
SNOMEDCT:192327003
GeneRIF:15289817
GeneRIF:15305151
GeneRIF:15522255
GeneRIF:12884975
GeneRIF:12210277
GeneRIF:11840504
GeneRIF:15274030
GeneRIF:12082558
GeneRIF:14569272
GeneRIF:15660667
GeneRIF:11803525
GeneRIF:14744462
GeneRIF:12402217
GeneRIF:15219469
GeneRIF:15098000
GeneRIF:12634474
GeneRIF:15820318
GeneRIF:11104840
GeneRIF:14732601
GeneRIF:15694262
GeneRIF:11803513
GeneRIF:15091314
GeneRIF:15631889
GeneRIF:14732589
GeneRIF:14754787
GeneRIF:12149916
GeneRIF:12425946
GeneRIF:15870291
GeneRIF:12140778
GeneRIF:15318028
GeneRIF:15630410
GeneRIF:12812986
GeneRIF:14985387
GeneRIF:15774266
GeneRIF:14755440
GeneRIF:12815736
GeneRIF:12109966
GeneRIF:12270648
GeneRIF:15939883
GeneRIF:15820227
NCIt:C3362
GeneRIF:12799619
GeneRIF:12506198
GeneRIF:15900221
ICD9:295
GeneRIF:11891283
GeneRIF:11840510
GeneRIF:15858820
GeneRIF:12815735
GeneRIF:15449241
GeneRIF:15167695
SNOMEDCT:191526005
ICD9:295.81
ICD9:295.8
GeneRIF:12474144
GeneRIF:15998189
GeneRIF:12097806
GeneRIF:12098102
GeneRIF:11952921
GeneRIF:14647391
GeneRIF:15927374
GeneRIF:15940296
GeneRIF:15465982
GeneRIF:14623371
GeneRIF:12691788
GeneRIF:12605097
GeneRIF:15007393
GeneRIF:16084002
GeneRIF:12192610
GeneRIF:15841096
GeneRIF:15737668
GeneRIF:15038995
GeneRIF:12082559
GeneRIF:15219467
GeneRIF:12648734
ICD9:295.85
ICD9:295.94
DOID:5419
GeneRIF:15219675
GeneRIF:15576061
GeneRIF:16039051
GeneRIF:16152568
GeneRIF:14618545
GeneRIF:15464270
GeneRIF:14741324
GeneRIF:12808430
GeneRIF:11807415
GeneRIF:12782962
GeneRIF:15048642
GeneRIF:12605094
GeneRIF:12399954
GeneRIF:15124015
GeneRIF:14966479
GeneRIF:16011574
GeneRIF:15211620
GeneRIF:15221639
GeneRIF:11042361
GeneRIF:15601604
GeneRIF:14642436
GeneRIF:12627456
GeneRIF:12814864
GeneRIF:14509080
GeneRIF:14755439
GeneRIF:15292665
GeneRIF:15211629
BioportalImporter v.1.2
GeneRIF:15151706
GeneRIF:16056149
GeneRIF:15066891
GeneRIF:12875921
GeneRIF:16037677
GeneRIF:11681838
GeneRIF:15194870
GeneRIF:15389752
GeneRIF:11807409
GeneRIF:15363473
GeneRIF:15885920
GeneRIF:15668720
GeneRIF:15861039
GeneRIF:12591580
GeneRIF:15508520
GeneRIF:15362017
GeneRIF:15211628
GeneRIF:14729256
GeneRIF:12815733
GeneRIF:15274033
GeneRIF:15254796
GeneRIF:15617864
GeneRIF:15694236
SNOMEDCT:191528006
GeneRIF:12722515
GeneRIF:12950712
GeneRIF:12140776
GeneRIF:15271586
GeneRIF:15318026
GeneRIF:12439825
schizophrenia
GeneRIF:12478479
GeneRIF:15310849
GeneRIF:15564899
GeneRIF:12682740
GeneRIF:12218662
GeneRIF:15657645
GeneRIF:11702055
GeneRIF:15271585
GeneRIF:15539862
GeneRIF:15167690
GeneRIF:12610647
GeneRIF:12960750
GeneRIF:14582144
GeneRIF:14755443
GeneRIF:15450681
GeneRIF:15009827
GeneRIF:15945063
GeneRIF:12782960
ICD9:295.93
GeneRIF:12898568
GeneRIF:15738936
GeneRIF:15900227
GeneRIF:14623376
GeneRIF:11840500
GeneRIF:15564900
GeneRIF:15531077
GeneRIF:12497630
GeneRIF:15660663
GeneRIF:15048641
GeneRIF:14518171
ICD9:295.84
GeneRIF:15653259
GeneRIF:15094474
GeneRIF:12815740
SNOMEDCT:191579000
GeneRIF:14639047
GeneRIF:14755438
GeneRIF:15820333
GeneRIF:15820226
GeneRIF:15940305
GeneRIF:12007452
SNOMEDCT:58214004
NIFSTD:birnlex_2104
GeneRIF:14699424
GeneRIF:16082709
GeneRIF:12873802
GeneRIF:14623368
GeneRIF:12867516
ICD9:295.83
GeneRIF:11803454
GeneRIF:12436019
GeneRIF:15452587
GeneRIF:14732590
GeneRIF:15277408
GeneRIF:15652872
GeneRIF:15824744
GeneRIF:15124004
GeneRIF:15726117
James Malone
GeneRIF:15305146
GeneRIF:15211633
GeneRIF:15114630
GeneRIF:16039057
GeneRIF:12931209
GeneRIF:13129656
CS57598
http://www.arabidopsis.org/servlets/TairObject?id=1005158622&type=germplasm
CS57598 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158622&type=germplasm
James Malone
James Malone
Ele Holloway
NALM1
RKO
James Malone
flufenamic acid
James Malone
BioportalImporter v.1.2
2-{[3-(trifluoromethyl)phenyl]amino}benzoic acid[accessedResource: CHEBI:42638][accessDate: 2009-11-30]
CHEBI:42638
CL:0000218
A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons.[accessedResource: CL:0000218][accessDate: 2009-11-30]
Schwann cell
James Malone
BioportalImporter v.1.2
mating type alpha
PATO:0001344
MO_637
James Malone
BioportalImporter v.1.2
A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids.[accessedResource: PATO:0001344][accessDate: 2009-11-30]
GM11831
James Malone
James Malone
BioportalImporter v.1.2
tomatine
CHEBI:9630
(22S,25S)-5alpha-spirosolan-3beta-yl beta-D-glucopyranosyl-(1->2)-[beta-D-xylopyranosyl-(1->3)]-beta-D-glucopyranosyl-(1->4)-beta-D-galactopyranoside[accessedResource: CHEBI:9630][accessDate: 2009-11-30]
A spirostanyl glycoside that has formula C50H83NO21.[accessedResource: CHEBI:9630][accessDate: 2009-11-30]
caudal ganglionic eminence
James Malone
A caudal ganglionic eminence is a transitory brain structure present in the embryonic and fetal stages of brain development and that is located towards the caudal end.
MO_952
A biological replicate is a replicate role that consists of independent biological replicates made from different individual BioSources.
James Malone
biological replicate
pertussis[accessedResource: DOID:1116][accessDate: 2009-11-30]
pertussis
Pertussis (disorder)[accessedResource: DOID:1116][accessDate: 2009-11-30]
GeneRIF:12946329
DOID:1116
GeneRIF:12464013
Whooping cough due to B. pertussis[accessedResource: DOID:1116][accessDate: 2009-11-30]
ICD9:033.0
James Malone
MSH:D014917
Whooping cough due to bordetella pertussis [B. pertussis][accessedResource: DOID:1116][accessDate: 2009-11-30]
GeneRIF:15341649
SNOMEDCT:27836007
GeneRIF:16239529
A respiratory infection caused by BORDETELLA PERTUSSIS and characterized by paroxysmal coughing ending in a prolonged crowing intake of breath.[accessedResource: MSH:D014917][accessDate: 2009-11-30]
GeneRIF:12220988
GeneRIF:15716435
BioportalImporter v.1.2
GeneRIF:15845471
whooping cough
A phenothiazine that has formula C21H26N2S2.[accessedResource: CHEBI:9566][accessDate: 2009-11-30]
CHEBI:9566
thioridazine
10-[2-(1-methylpiperidin-2-yl)ethyl]-2-(methylsulfanyl)-10H-phenothiazine[accessedResource: CHEBI:9566][accessDate: 2009-11-30]
BioportalImporter v.1.2
cardiogenic mesoderm[accessedResource: FBbt:00005541][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
cardiac mesoderm[accessedResource: FBbt:00005541][accessDate: 2009-11-30]
CardMes[accessedResource: FBbt:00005541][accessDate: 2009-11-30]
cardiac mesoderm primordium
FBbt:00005541
CardMesP2[accessedResource: FBbt:00005541][accessDate: 2009-11-30]
James Malone
Ele Holloway
B140H
Tomasz Adamusiak
investigator
MO_769
James Malone
CS57706
http://www.arabidopsis.org/servlets/TairObject?id=1005158730&type=germplasm
CS57706 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158730&type=germplasm
GeneRIF:16051896
GeneRIF:15116266
stroke
GeneRIF:12871362
Syndrome, Stroke[accessedResource: NCIt:C3390][accessDate: 2009-11-30]
GeneRIF:15790561
GeneRIF:15829914
GeneRIF:15159412
GeneRIF:15725398
GeneRIF:14500938
GeneRIF:15935385
MSH:D020521
GeneRIF:15135928
GeneRIF:14644079
GeneRIF:15947272
GeneRIF:15009965
GeneRIF:15494442
GeneRIF:12038800
GeneRIF:15764676
GeneRIF:15623683
GeneRIF:12456385
James Malone
Stroke and cerebrovascular accident unspecified (disorder)[accessedResource: DOID:3455][accessDate: 2009-11-30]
GeneRIF:12907815
GeneRIF:12122874
GeneRIF:15894537
Cerebrovascular accident (disorder)[accessedResource: DOID:3455][accessDate: 2009-11-30]
CVA - Cerebrovascular accident unspecified[accessedResource: DOID:3455][accessDate: 2009-11-30]
GeneRIF:15044955
GeneRIF:16131797
GeneRIF:15731479
GeneRIF:14605330
GeneRIF:15080888
Cerebrovascular Accident, (CVA)[accessedResource: NCIt:C3390][accessDate: 2009-11-30]
GeneRIF:15701167
GeneRIF:15861005
GeneRIF:14517540
GeneRIF:15155526
GeneRIF:15516929
GeneRIF:15056284
GeneRIF:14500739
GeneRIF:15896953
SNOMEDCT:230690007
GeneRIF:15910856
GeneRIF:15567334
NCIt:C3390
GeneRIF:15114595
GeneRIF:15277638
GeneRIF:15890883
Cerebrovascular accident (disorder) [Ambiguous][accessedResource: DOID:3455][accessDate: 2009-11-30]
GeneRIF:16020760
GeneRIF:16051894
DOID:3455
GeneRIF:12123486
GeneRIF:12586134
GeneRIF:11926892
GeneRIF:15272143
GeneRIF:15947254
GeneRIF:14512079
GeneRIF:14770184
GeneRIF:16131798
Tomasz Adamusiak
GeneRIF:14671240
GeneRIF:14681304
BioportalImporter v.1.2
NIFSTD:birnlex_12783
GeneRIF:16085363
GeneRIF:15891996
GeneRIF:15108283
GeneRIF:14753448
A group of pathological conditions characterized by sudden, non-convulsive loss of neurological function due to BRAIN ISCHEMIA or INTRACRANIAL HEMORRHAGES. Stroke is classified by the type of tissue NECROSIS, such as the anatomic location, vasculature involved, etiology, age of the affected individual, and hemorrhagic vs. non-hemorrhagic nature. (From Adams et al., Principles of Neurology, 6th ed, pp777-810)[accessedResource: MSH:D020521][accessDate: 2009-11-30]
GeneRIF:15673342
GeneRIF:15576653
CVA (cerebral vascular accident)[accessedResource: DOID:3455][accessDate: 2009-11-30]
GeneRIF:12695749
GeneRIF:16141422
GeneRIF:15138244
Stroke NOS (disorder)[accessedResource: DOID:3455][accessDate: 2009-11-30]
GeneRIF:15613145
GeneRIF:15634282
GeneRIF:11935032
Cerebrovascular Accident[accessedResource: NCIt:C3390][accessDate: 2009-11-30]
GeneRIF:15677572
GeneRIF:16051899
GeneRIF:12515395
GeneRIF:15341589
GeneRIF:12011770
GeneRIF:12843357
GeneRIF:14643574
GeneRIF:15640973
GeneRIF:12855940
GeneRIF:15090053
GeneRIF:11823528
GeneRIF:16109906
GeneRIF:12393616
SNOMEDCT:313267000
A sudden, nonconvulsive loss of neurologic function due to an ischemic or hemorrhagic intracranial vascular event. In general, cerebrovascular accidents are classified by anatomic location in the brain, vascular distribution, etiology, age of the affected individual, and hemorrhagic vs. nonhemorrhagic nature. (From Adams et al., Principles of Neurology, 6th ed, pp777-810)[accessedResource: NCIt:C3390][accessDate: 2009-11-30]
GeneRIF:11822892
GeneRIF:16262627
GeneRIF:15232611
GeneRIF:14961162
GeneRIF:14507642
GeneRIF:14574075
SNOMEDCT:270883006
GeneRIF:12598732
GeneRIF:15178823
GeneRIF:12508918
GeneRIF:16237435
CVA[accessedResource: NCIt:C3390][accessDate: 2009-11-30]
GeneRIF:16179580
GeneRIF:12140663
GeneRIF:16165118
GeneRIF:15456942
GeneRIF:12947326
GeneRIF:15914769
GeneRIF:15201542
GeneRIF:12464678
GeneRIF:14655755
GeneRIF:15681302
GeneRIF:14753436
GeneRIF:12006921
Stroke/CVA - undefined[accessedResource: DOID:3455][accessDate: 2009-11-30]
GeneRIF:11570818
GeneRIF:15916851
James Malone
Ele Holloway
HEC1B
http://www.arabidopsis.org/servlets/TairObject?id=1005158625&type=germplasm
CS57601 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158625&type=germplasm
James Malone
CS57601
GeneRIF:11898127
HSMN V[accessedResource: DOID:2476][accessDate: 2009-11-30]
A group of inherited diseases that share similar phenotypes but are genetically diverse. Different genetic loci for autosomal recessive, autosomal dominant, and x-linked forms of hereditary spastic paraplegia have been identified. Clinically, patients present with slowly progressive distal limb weakness and lower extremity spasticity. Peripheral sensory neurons may be affected in the later stages of the disease. (J Neurol Neurosurg Psychiatry 1998 Jan;64(1):61-6; Curr Opin Neurol 1997 Aug;10(4):313-8)[accessedResource: MSH:D015419][accessDate: 2009-11-30]
MSH:D015419
DOID:2476
SNOMEDCT:39912006
GeneRIF:15159500
GeneRIF:15667412
GeneRIF:15858810
hereditary spastic paraplegia
GeneRIF:12134148
Hereditary spastic paraplegia (disorder)[accessedResource: DOID:2476][accessDate: 2009-11-30]
GeneRIF:15939438
GeneRIF:15248095
James Malone
GeneRIF:12355402
SNOMEDCT:76043009
GeneRIF:12490534
ICD9:334.1
GeneRIF:11704932
GeneRIF:16026783
GeneRIF:15452312
GeneRIF:12161613
BioportalImporter v.1.2
MT3
James Malone
Ele Holloway
129X1/SvJ is a substrain of the mouse strain 129 as described in Jackson Laboratory http://jaxmice.jax.org/strain/000691.html Note this strain was formerly called 129X1
Tomasz Adamusiak
James Malone
http://jaxmice.jax.org/strain/000691.html
NIFSTD:birnlex_557
129X1
129X1/SvJ
James Malone
BioportalImporter v.1.2
lipocyte[accessedResource: CL:0000136][accessDate: 2009-11-30]
adipocyte[accessedResource: CL:0000136][accessDate: 2009-11-30]
fat cell
A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of tryglycerides.[accessedResource: CL:0000136][accessDate: 2009-11-30]
CL:0000136
CHEBI:16842
BioportalImporter v.1.2
formaldehyde
An aldehyde that has formula CH2O.[accessedResource: CHEBI:16842][accessDate: 2009-11-30]
GM07357
James Malone
motor cortex
James Malone
MO_641
James Malone
technical replicate
A technical replicate is a replicate role where the same BioSample is use e.g. the same pool of RNA used to assess technical (as opposed to biological) variation within an experiment.
brain structure developmental tissue
James Malone
A brain structure developmental tissue is a nervous system developmental tissue from which mature, fully developed brain structures will emerge during growth of an organism.
CHEBI:27999
N-[(butylamino)carbonyl]-4-methylbenzenesulfonamide[accessedResource: CHEBI:27999][accessDate: 2009-11-30]
An urea that has formula C12H18N2O3S.[accessedResource: CHEBI:27999][accessDate: 2009-11-30]
BioportalImporter v.1.2
tolbutamide
CS57709 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158733&type=germplasm
CS57709
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158733&type=germplasm
institution
NIFSTD:birnlex_2085
MO_601
Tomasz Adamusiak
B117P
James Malone
Ele Holloway
1.4
James Malone
The paired upper chambers of the heart. The left atrium receives oxygenated blood from the pulmonary vein and pumps blood into the left ventricle. The right atrium receives venous deoxygenated blood from the entire body via the superior and inferior vena cavae and pumps blood into the right ventricle.
[Source: NCI Thesaurus C12728]
In the heart, the atrium is an upper chamber found on both sides of the heart. The left atrium receives red, oxygenated blood from the lungs by way of the pulmonary veins. The right atrium receives dark red blood from the other parts of the body.[accessedResource: BTO:0000903][accessDate: 2009-11-30]
BioportalImporter v.1.2
Heart Atrium[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
Atria, Cardiac[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
NCIt:C12728
obsolete_cardiac atrium
atrial chamber
Cardiac Atrium[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
Atrium of Heart[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
Heart Atria[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
Auricle of Heart[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
true
Atrium[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
BTO:0000903
Use atrium instead : EFO_0000277
Atria of Heart[accessedResource: NCIt:C12728][accessDate: 2009-11-30]
GeneRIF:14753493
Subarachnoid haemorrhage[accessedResource: DOID:11236][accessDate: 2009-11-30]
SNOMEDCT:195162008
BioportalImporter v.1.2
SNOMEDCT:21454007
GeneRIF:15331787
subarachnoid hemorrhage
Subarachnoid hemorrhage NOS (disorder)[accessedResource: DOID:11236][accessDate: 2009-11-30]
ICD9:430
GeneRIF:15297630
GeneRIF:12677022
GeneRIF:15665056
GeneRIF:15091109
GeneRIF:15947258
MSH:D013345
GeneRIF:15947264
DOID:11236
Bleeding into the intracranial or spinal SUBARACHNOID SPACE, most resulting from INTRACRANIAL ANEURYSM rupture. It can occur after traumatic injuries (SUBARACHNOID HEMORRHAGE, TRAUMATIC). Clinical features include HEADACHE; NAUSEA; VOMITING, nuchal rigidity, variable neurological deficits and reduced mental status.[accessedResource: MSH:D013345][accessDate: 2009-11-30]
Subarachnoid hemorrhage (disorder)[accessedResource: DOID:11236][accessDate: 2009-11-30]
GeneRIF:15381648
James Malone
James Malone
Ele Holloway
HEC1A
The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules.[accessedResource: CL:0000182][accessDate: 2009-11-30]
A liver cell.[accessedResource: BTO:0000575][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CL:0000182
BTO:0000575
hepatocyte
James Malone
Ele Holloway
MV4II
GeneRIF:15004750
GeneRIF:15459013
GeneRIF:16053025
GeneRIF:12047365
GeneRIF:15735647
MSH:D012507
sarcoidosis
GeneRIF:12180727
NCIt:C34995
GeneRIF:15713215
GeneRIF:15976369
DOID:11335
GeneRIF:14601651
GeneRIF:12413001
GeneRIF:15750046
SNOMEDCT:31541009
An idiopathic systemic inflammatory granulomatous disorder comprised of epithelioid and multinucleated giant cells with little necrosis. It usually invades the lungs with fibrosis and may also involve lymph nodes, skin, liver, spleen, eyes, phalangeal bones, and parotid glands.[accessedResource: MSH:D012507][accessDate: 2009-11-30]
GeneRIF:15702130
ICD9:135
GeneRIF:14597055
GeneRIF:12091241
Boeck Sarcoid, any site[accessedResource: DOID:11335][accessDate: 2009-11-30]
Sarcoidosis (disorder)[accessedResource: DOID:11335][accessDate: 2009-11-30]
GeneRIF:12068984
GeneRIF:12039524
BioportalImporter v.1.2
GeneRIF:16053028
GeneRIF:15332393
GeneRIF:15942292
James Malone
GeneRIF:15083893
GeneRIF:15019280
GeneRIF:14551164
GeneRIF:16236915
GeneRIF:14508706
GeneRIF:12366781
B117H
James Malone
Ele Holloway
James Malone
R8
FMA:54510
Ele Holloway
Oculomotor nuclear complex[accessedResource: FMA:54510][accessDate: 2009-11-30]
James Malone
Nucleus of third cranial nerve[accessedResource: FMA:54510][accessDate: 2009-11-30]
Nucleus of oculomotor nerve[accessedResource: FMA:54510][accessDate: 2009-11-30]
BioportalImporter v.1.2
EV:0100250
Third cranial nerve nucleus[accessedResource: FMA:54510][accessDate: 2009-11-30]
oculomotor nucleus
GM11829
James Malone
CHEBI:42471
forskolin
A labdane diterpenoid that has formula C22H34O7.[accessedResource: CHEBI:42471][accessDate: 2009-11-30]
(3R,4aR,5S,6S,6aS,10S,10aR,10bS)-3-ethenyl-6,10,10b-trihydroxy-3,4a,7,7,10a-pentamethyl-1-oxododecahydro-1H-benzo[f]chromen-5-yl acetate[accessedResource: CHEBI:42471][accessDate: 2009-11-30]
BioportalImporter v.1.2
preadipocyte
A precursor to an adipocyte.[accessedResource: BTO:0001107][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
BTO:0001107
James Malone
hemopoietic stem cell[accessedResource: CL:0000037][accessDate: 2009-11-30]
hematopoietic stem cell
CL:0000037
BioportalImporter v.1.2
colony forming unit hematopoietic
HSC[accessedResource: CL:0000037][accessDate: 2009-11-30]
A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system.[accessedResource: CL:0000037][accessDate: 2009-11-30]
James Malone
carcinoma
A type of malignant cancer that arises from epithelial cells tending to infiltrate the surrounding tissues and give rise to metastases.
hormone
A non-nucleated disk-shaped cell formed by extrusion from megakaryocytes, found in the blood of all mammals, and mainly involved in blood coagulation.[accessedResource: CL:0000233][accessDate: 2009-11-30]
platelet
CL:0000233
James Malone
BioportalImporter v.1.2
blood platelet[accessedResource: CL:0000233][accessDate: 2009-11-30]
CS57704
http://www.arabidopsis.org/servlets/TairObject?id=1005158728&type=germplasm
CS57704 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158728&type=germplasm
James Malone
CHEBI:16523
Tomasz Adamusiak
Ele Holloway
D-serine
James Malone
Ele Holloway
BC-1
James Malone
Ele Holloway
HDMYZ
CHEBI:35705
An agent that suppresses immune function by one of several mechanisms of action. Classical cytotoxic immunosuppressants act by inhibiting DNA synthesis. Others may act through activation of T-cells or by inhibiting the activation of helper cells. In addition, an immunosuppressive agent is a role played by a compound which is exhibited by a capability to diminish the extent and/or voracity of an immune response.[accessedResource: CHEBI:35705][accessDate: 2009-11-30]
immunosuppressive agent
James Malone
CHEBI:35705
BioportalImporter v.1.2
plasma cell neoplasm
James Malone
NCIt:C27837
Crohn's disease
DOID:4039
James Malone
Gastritis Associated with Crohn Disease[accessedResource: NCIt:C27837][accessDate: 2009-11-30]
Crohn's Associated Gastritis[accessedResource: NCIt:C27837][accessDate: 2009-11-30]
Gastritis Associated with Crohn's Disease[accessedResource: NCIt:C27837][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
GM07056
James Malone
amoxicillin
6beta-[(2R)-2-amino-2-(4-hydroxyphenyl)acetamido]-2,2-dimethylpenam-3alpha-carboxylic acid[accessedResource: CHEBI:2676][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:2676
A penicillin that has formula C16H19N3O5S.[accessedResource: CHEBI:2676][accessDate: 2009-11-30]
http://en.wikipedia.org/wiki/BALB/c
NIFSTD:birnlex_206
Tomasz Adamusiak
James Malone
BALB/c is a mouse strain of albion mice.
BALB/c
NC37
James Malone
Ele Holloway
An alkene that has formula C2H4.[accessedResource: CHEBI:18153][accessDate: 2009-11-30]
CHEBI:18153
ethene
James Malone
BioportalImporter v.1.2
nutraceutical
CHEBI:50733
James Malone
BioportalImporter v.1.2
A product in capsule, tablet or liquid form that provide essential nutrients, such as a vitamin, an essential mineral, a protein, an herb, or similar nutritional substance.[accessedResource: CHEBI:50733][accessDate: 2009-11-30]
CHEBI:50733
647V
James Malone
Ele Holloway
CS57586
CS57586 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158610&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158610&type=germplasm
James Malone
MO_763
hardware manufacturer
Tomasz Adamusiak
PATO:0000047
BioportalImporter v.1.2
James Malone
MO_680
NCIt:C28421
Jie Zheng
Term applied to any organism able to undergo sexual reproduction in order to differentiate the individuals or types involved. Sexual reproduction is defined as the ability to exchange genetic material with the potential of recombinant progeny.
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.[accessedResource: PATO:0000047][accessDate: 2009-11-30]
Tomasz Adamusiak
The assemblage of physical properties or qualities by which male is distinguished from female; the physical difference between male and female; the distinguishing peculiarity of male or female.[accessedResource: NCIt:C28421][accessDate: 2009-11-30]
sex
leprosy
BioportalImporter v.1.2
ICD9:030
GeneRIF:15072129
ICD9:030.8
GeneRIF:15880118
SNOMEDCT:81004002
GeneRIF:15306847
GeneRIF:15755200
GeneRIF:15356162
DOID:1024
GeneRIF:14737177
SNOMEDCT:187316006
GeneRIF:12447749
GeneRIF:12646604
ICD9:030.9
James Malone
SNOMEDCT:186339006
double-positive, alpha-beta immature T lymphocyte[accessedResource: CL:0000809][accessDate: 2009-11-30]
CL:0000809
nontransformed thymocyte
double-positive, alpha-beta thymocyte[accessedResource: CL:0000809][accessDate: 2009-11-30]
DP thymocyte
BioportalImporter v.1.2
James Malone
A thymocyte expressing the alpha-beta T cell receptor complex as well as both the CD4 and CD8 coreceptors.[accessedResource: CL:0000809][accessDate: 2009-11-30]
DP cell[accessedResource: CL:0000809][accessDate: 2009-11-30]
use EFO_0000527
obsolete_hemopoietic progenitor cell
true
CL:0000037
James Malone
hemopoietic stem cell[accessedResource: CL:0000037][accessDate: 2009-11-30]
BioportalImporter v.1.2
HSC[accessedResource: CL:0000037][accessDate: 2009-11-30]
A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system.[accessedResource: CL:0000037][accessDate: 2009-11-30]
hematopoietic stem cell[accessedResource: CL:0000037][accessDate: 2009-11-30]
Location of cancer, primary or metastatic
Jie Zheng
James Malone
cancer site
MO_26
This will be obsoleted in near future.
Tomasz Adamusiak
James Malone
Ele Holloway
B140P
SNOMEDCT:74728003
Hypopituitarism (disorder)[accessedResource: DOID:9406][accessDate: 2009-11-30]
Hypopituitarism: [NOS] or [Sheehan's syndrome] or [Simmond's disease] or [Panhypopituitarism][accessedResource: DOID:9406][accessDate: 2009-11-30]
BioportalImporter v.1.2
Pituitary insufficiency NOS[accessedResource: DOID:9406][accessDate: 2009-11-30]
A condition of diminution or cessation of secretion of one or more hormones from the anterior pituitary gland. This may result from surgical or radiation ablation, non-secretory pituitary neoplasms, metastatic tumors, infarction, pituitary apoplexy, infiltrative or granulomatous processes, and other conditions.[accessedResource: NCIt:C62591][accessDate: 2009-11-30]
GeneRIF:15928241
DOID:9406
James Malone
Pituitary hypofunction[accessedResource: DOID:9406][accessDate: 2009-11-30]
GeneRIF:12651888
Pituitary Insufficiency[accessedResource: NCIt:C62591][accessDate: 2009-11-30]
MSH:D007018
GeneRIF:14714741
hypopituitarism
GeneRIF:12717343
Hypopituitarism NOS (disorder)[accessedResource: DOID:9406][accessDate: 2009-11-30]
NCIt:C62591
GeneRIF:15800844
SNOMEDCT:237681002
Diminution or cessation of secretion of one or more hormones from the anterior pituitary gland (including LH; FOLLICLE STIMULATING HORMONE; SOMATOTROPIN; and CORTICOTROPIN). This may result from surgical or radiation ablation, non-secretory PITUITARY NEOPLASMS, metastatic tumors, infarction, PITUITARY APOPLEXY, infiltrative or granulomatous processes, and other conditions.[accessedResource: MSH:D007018][accessDate: 2009-11-30]
GeneRIF:14581620
IPC[accessedResource: CL:0000784][accessDate: 2009-11-30]
CL:0000784
lymphoid dendritic cell[accessedResource: CL:0000784][accessDate: 2009-11-30]
A dendritic cell type of distinct morphology, localization, and surface marker expression from other dendritic cell types and associated with early stage immune responses, particularly the release of physiologically abundant amounts of type I interferons in response to infection.[accessedResource: CL:0000784][accessDate: 2009-11-30]
plasmacytoid dendritic cell
T-associated plasma cell[accessedResource: CL:0000784][accessDate: 2009-11-30]
plasmacytoid T cell[accessedResource: CL:0000784][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
pDC[accessedResource: CL:0000784][accessDate: 2009-11-30]
interferon-producing cell[accessedResource: CL:0000784][accessDate: 2009-11-30]
plasmacytoid monocyte[accessedResource: CL:0000784][accessDate: 2009-11-30]
DC2[accessedResource: CL:0000784][accessDate: 2009-11-30]
James Malone
CS57705 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158729&type=germplasm
CS57705
http://www.arabidopsis.org/servlets/TairObject?id=1005158729&type=germplasm
CHEBI:7959
D-penicillamine
Tomasz Adamusiak
Ele Holloway
protocol parameter
James Malone
CHEBI:35717
sedative drug
CHEBI:35717
FBbt:00001690
James Malone
crystal cell
129xC57BL/6 is a substrain of the mouse strain 129 as described in article PUBMED ID 15015938
129xC57BL/6
PUBMED ID: 15015938
James Malone
James Malone
CHEBI:50527
arsenic oxides
James Malone
GM07345
James Malone
CS57587
CS57587 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158611&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158611&type=germplasm
James Malone
A process whereby a stress state is applied parallel or tangential to a face of the material.
shear stressing
CHEBI:50683
CHEBI:50683
James Malone
folic acid reductase inhibitor
ethyl nitrosourea
N-ethyl-N-nitrosourea[accessedResource: CHEBI:23995][accessDate: 2009-11-30]
1-ethyl-1-nitrosourea[accessedResource: CHEBI:23995][accessDate: 2009-11-30]
BioportalImporter v.1.2
A urea compound having ethyl and nitroso substituents in the 1-position.[accessedResource: CHEBI:23995][accessDate: 2009-11-30]
CHEBI:23995
639V
James Malone
Ele Holloway
NCIH1048
James Malone
Ele Holloway
BioportalImporter v.1.2
BTO:0001784
Peyers Patch (MMHCC)[accessedResource: NCIt:C22562][accessDate: 2009-11-30]
Peyer's patch
Any of numerous large oval patches of closely aggregated nodules of lymphoid tissue in the walls of the small intestine esp. in the ileum that partially or entirely disappear in advanced life and in typhoid fever become the seat of ulcers which may perforate the intestines.[accessedResource: BTO:0001784][accessDate: 2009-11-30]
James Malone
NCIt:C22562
stigma
James Malone
MAT:0000524
BioportalImporter v.1.2
BTO:0001303
The usually apical part of the pistil of a flower which receives the pollen grains and on which they germinate.[accessedResource: BTO:0001303][accessDate: 2009-11-30]
PO:0009073
funder
Tomasz Adamusiak
MO_520
MO_743
James Malone
Jie Zheng
A nanomole is a substance unit equal to one thousandth of one millionth of a mole or 10^-9 mol.
UO:0000041
A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.[accessedResource: UO:0000041][accessDate: 2009-11-30]
nanomole
Tomasz Adamusiak
nmol[accessedResource: UO:0000041][accessDate: 2009-11-30]
BioportalImporter v.1.2
DEL cells
James Malone
ZFA:0000711
MDCC-MSB1
BTO:0000392
plasma cell
A terminally differentiated cell of the B lymphocyte lineage that produces antibodies; plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern.[accessedResource: BTO:0000392][accessDate: 2009-11-30]
multiple myeloma tumour cell
BioportalImporter v.1.2
A terminally differentiated, post-mitotic, antibody secreting cell of the B cell lineage with the phenotype CD138-positive, surface immunonoglobulin-negative, and MHC Class II-negative. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern and are devoted to producing large amounts of immunoglobulin.[accessedResource: CL:0000786][accessDate: 2009-11-30]
CL:0000786
plasmacyte[accessedResource: CL:0000786][accessDate: 2009-11-30]
James Malone
Tomasz Adamusiak
true
malignant tumor
malignant neoplasia
James Malone
malignant tumour
cancer
ductal carcinoma in situ
NIFSTD:birnlex_406
A malignant neoplasm in which new abnormal tissue grow by excessive cellular division and proliferation more rapidly than normal and continues to grow after the stimuli that initiated the new growth cease.
BC-3
James Malone
Ele Holloway
CS57699 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158723&type=germplasm
James Malone
CS57699
http://www.arabidopsis.org/servlets/TairObject?id=1005158723&type=germplasm
1.8
James Malone
Synonymous with lymphoid neoplasm EFO_0001642 - use instead.
true
haematological neoplasm
DOID:253
OntologyMappingImporter following DOID:253
obsolete_hematological neoplasm
James Malone
Ele Holloway
22Rv1
Uterus, corpus[accessedResource: NCIt:C12316][accessDate: 2009-11-30]
corpus uteri
The Corpus uteri, or body of uterus, is the part of the uterus above the isthmus, comprising about two thirds of the non-pregnant organ.[accessedResource: NCIt:C12316][accessDate: 2009-11-30]
James Malone
Uterine Body[accessedResource: NCIt:C12316][accessDate: 2009-11-30]
BioportalImporter v.1.2
corpus[accessedResource: NCIt:C12316][accessDate: 2009-11-30]
NCIt:C12316
CHEBI:35679
A substance used to treat hyperlipidemia (an excess of lipids in the blood).[accessedResource: CHEBI:35679][accessDate: 2009-11-30]
CHEBI:35679
James Malone
BioportalImporter v.1.2
antilipemic drug
James Malone
Ele Holloway
5637
Poisonous substance produced by a biological organism such as a microbe, animal or plant.[accessedResource: CHEBI:27026][accessDate: 2009-11-30]
NIFSTD:birnlex_2103
BioportalImporter v.1.2
CHEBI:27026
toxin
Tomasz Adamusiak
2-(3,4-dihydroxyphenyl)-3,7-dihydroxy-4H-chromen-4-one[accessedResource: CHEBI:42567][accessDate: 2009-11-30]
CHEBI:42567
BioportalImporter v.1.2
A tetrahydroxyflavone that has formula C15H10O6.[accessedResource: CHEBI:42567][accessDate: 2009-11-30]
fisetin
BioportalImporter v.1.2
James Malone
CHEBI:50646
bone density conservation agent
CHEBI:50646
An agent that inhibits bone resorption and/or favor bone mineralization and bone regeneration. Used to heal bone fractures and to treat metabolic bone diseases.[accessedResource: CHEBI:50646][accessDate: 2009-11-30]
C57BL/10
C57BL/10 is a mouse strain as described in Jackson Laboratory http://www.informatics.jax.org/searches/reference.cgi?7550
James Malone
http://www.informatics.jax.org/searches/reference.cgi?7550
James Malone
juvenile days 30-44
ZFS:0000042
(1S)-2-{[(1E)-1-[(3R,4R,5S)-3-(acetyloxy)-4-hydroxy-1-azabicyclo[3.1.0]hex-2-ylidene]-2-{[(1Z)-1-(hydroxymethylidene)-2-oxopropyl]amino}-2-oxoethyl]amino}-1-[(2S)-2-methyloxiran-2-yl]-2-oxoethyl 3-methoxy-5-methylnaphthalene-1-carboxylate[accessedResource: CHEBI:50862][accessDate: 2009-11-30]
A naphthalene that has formula C31H33N3O11.[accessedResource: CHEBI:50862][accessDate: 2009-11-30]
azinomycin B
James Malone
BioportalImporter v.1.2
CHEBI:50862
Jie Zheng
K[accessedResource: UO:0000012][accessDate: 2009-11-30]
A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.[accessedResource: UO:0000012][accessDate: 2009-11-30]
James Malone
A kelvin is a thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.
kelvin
UO:0000012
BioportalImporter v.1.2
MO_614
Tomasz Adamusiak
GM07034
James Malone
BioportalImporter v.1.2
micromole
µmol
Tomasz Adamusiak
UO:0000039
Jie Zheng
umol[accessedResource: UO:0000039][accessDate: 2009-11-30]
MO_752
A substance unit equal to a millionth of a mol or 10^[-6] mol.[accessedResource: UO:0000039][accessDate: 2009-11-30]
James Malone
James Malone
plant ovary
The enlarged rounded usually basal portion of the pistil or gynoecium of an angiospermous plant that bears the ovules and consists of one or more carpels[accessedResource: BTO:0000750][accessDate: 2009-11-30]
MAT:0000517
PO:0009072
BioportalImporter v.1.2
BTO:0000750
James Malone
CS57591 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158615&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158615&type=germplasm
CS57591
Tomasz Adamusiak
MO_695
data coder
James Malone
Ele Holloway
NALM6
SNOMEDCT:409704009
Neurinoma[accessedResource: NCIt:C3269][accessDate: 2009-11-30]
NCIt:C6556
GeneRIF:12118253
SNOMEDCT:404022001
A tumor of the peripheral nervous system composed of neoplastic Schwann cells. The vast majority of schwannomas follow a benign clinical course. Only rare cases associated with a malignant clinical course have been reported.[accessedResource: NCIt:C3269][accessDate: 2009-11-30]
Psammomatous schwannoma[accessedResource: DOID:3192][accessDate: 2009-11-30]
Ancient Neurilemmoma[accessedResource: NCIt:C6556][accessDate: 2009-11-30]
NIFSTD:birnlex_12603
BioportalImporter v.1.2
James Malone
GeneRIF:14566860
Degenerated Neurilemmoma[accessedResource: NCIt:C6556][accessDate: 2009-11-30]
MSH:D009442
SNOMEDCT:404023006
Neurilemmoma[accessedResource: NCIt:C3269][accessDate: 2009-11-30]
GeneRIF:12665675
SNOMEDCT:985004
NCIt:C3269
GeneRIF:12444102
GeneRIF:13679444
GeneRIF:14612918
Neurilemmoma (disorder)[accessedResource: DOID:3192][accessDate: 2009-11-30]
Ancient Schwannoma[accessedResource: NCIt:C6556][accessDate: 2009-11-30]
Tomasz Adamusiak
GeneRIF:15837555
Degenerated Schwannoma[accessedResource: NCIt:C6556][accessDate: 2009-11-30]
GeneRIF:15850583
schwannoma
DOID:3192
A neoplasm that arises from SCHWANN CELLS of the cranial, peripheral, and autonomic nerves. Clinically, these tumors may present as a cranial neuropathy, abdominal or soft tissue mass, intracranial lesion, or with spinal cord compression. Histologically, these tumors are encapsulated, highly vascular, and composed of a homogenous pattern of biphasic fusiform-shaped cells that may have a palisaded appearance. (From DeVita Jr et al., Cancer: Principles and Practice of Oncology, 5th ed, pp964-5)[accessedResource: MSH:D009442][accessDate: 2009-11-30]
gamma-tocopherol
CHEBI:18185
Tomasz Adamusiak
Ele Holloway
A benign, borderline, or malignant fibroepithelial neoplasm arising from the breast and rarely the prostate gland. It may recur following resection. The recurrence rates are higher for borderline and malignant phyllodes tumors. In borderline and malignant phyllodes tumors metastases to distant anatomic sites can occur. The incidence of metastases is higher in malignant phyllodes tumors.
[Source: NCI Thesaurus C2977]
DOID:2608
GeneRIF:15044924
Cystosarcoma phyllodes NOS (morphologic abnormality)[accessedResource: DOID:2608][accessDate: 2009-11-30]
Cystosarcoma phyllodes, NOS[accessedResource: DOID:2608][accessDate: 2009-11-30]
A type of connective tissue neoplasm arising from intralobular stroma of the BREAST. It is characterized by the rapid enlargement of an asymmetric firm mobile mass. Histologically, its leaf-like stromal clefts are lined by EPITHELIAL CELLS.[accessedResource: MSH:D003557][accessDate: 2009-11-30]
SNOMEDCT:189825002
Cystosarcoma phyllodes[accessedResource: DOID:2608][accessDate: 2009-11-30]
NCIt:C2977
phyllodes tumor
BioportalImporter v.1.2
James Malone
MSH:D003557
SNOMEDCT:71232009
Phyllodes neoplasm[accessedResource: DOID:2608][accessDate: 2009-11-30]
PO:0009029
The floral organ that produces pollen; consisting of an anther and filament.[accessedResource: BTO:0001559][accessDate: 2009-11-30]
BTO:0001559
ZEA:0015134
MAT:0000515
James Malone
stamen
BioportalImporter v.1.2
head disease
The name of the pathology diagnosed in the organism from which the biomaterial was derived. The disease state is normal if no disease has been diagnosed. E.g Acute Lymphocytic Leukemia
James Malone
BioportalImporter v.1.2
DOID:4149
disorder of head (disorder)[accessedResource: DOID:4149][accessDate: 2009-11-30]
CS57701
http://www.arabidopsis.org/servlets/TairObject?id=1005158725&type=germplasm
James Malone
CS57701 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158725&type=germplasm
James Malone
Ele Holloway
BC-2
GeneRIF:11741828
1.8
GeneRIF:15351423
GeneRIF:11891182
A heterogenous group of inherited muscular dystrophy that can be autosomal dominant or autosomal recessive. There are many forms (called LGMDs) involving genes encoding muscle membrane proteins such as the sarcoglycan (SARCOGLYCANS) complex that interacts with DYSTROPHIN. The disease is characterized by progressing wasting and weakness of the proximal muscles of arms and legs around the HIPS and SHOULDERS (the pelvic and shoulder girdles).[accessedResource: MSH:D049288][accessDate: 2009-11-30]
GeneRIF:12499399
obsolete_calpainopathy
GeneRIF:15385448
true
duplicate of limb-girdle muscular dystrophy EFO_0000758
GeneRIF:15087111
GeneRIF:12032588
SNOMEDCT:93153005
James Malone
GeneRIF:14600260
GeneRIF:16344347
GeneRIF:14981167
MSH:D049288
Leyden-Mbius muscular dystrophy[accessedResource: DOID:11724][accessDate: 2009-11-30]
DOID:11724
BioportalImporter v.1.2
GeneRIF:12428213
Muscular Dystrophies, Limb-Girdle[accessedResource: DOID:11724][accessDate: 2009-11-30]
GeneRIF:11822024
Muscular dystrophy, limb-girdle[accessedResource: DOID:11724][accessDate: 2009-11-30]
limb-girdle muscular dystrophy type 2A
cortex is ambiguous as class under brain so removed
true
Cortical[accessedResource: NCIt:C12443][accessDate: 2009-11-30]
James Malone
1.8
NCIt:C12443
The surface layer of gray matter of the cerebrum that functions chiefly in coordination of sensory and motor information.[accessedResource: BTO:0000233][accessDate: 2009-11-30]
BTO:0000233
Cerebral Cortex[accessedResource: NCIt:C12443][accessDate: 2009-11-30]
BioportalImporter v.1.2
NIFSTD:birnlex_1494
Tomasz Adamusiak
obsolete_cortex
CHEBI:35703
BioportalImporter v.1.2
xenobiotics[accessedResource: CHEBI:35703][accessDate: 2009-11-30]
A xenobiotic (Greek, xenos "foreign"; bios "life") is a compound that is foreign to a living organism. Principal xenobiotics include: drugs, carcinogens and various compounds that have been introduced into the environment by artificial means.[accessedResource: CHEBI:35703][accessDate: 2009-11-30]
James Malone
xenobiotic
CHEBI:35703
James Malone
Ele Holloway
1A2
CHEBI:42491
BioportalImporter v.1.2
flavone
2-phenyl-4H-chromen-4-one[accessedResource: CHEBI:42491][accessDate: 2009-11-30]
A flavone that has formula C15H10O2.[accessedResource: CHEBI:42491][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:50630
CHEBI:50630
cyclooxygenase 1 inhibitor
A cyclooxygenase inhibitor with specificity for cyclooxygenase 1.[accessedResource: CHEBI:50630][accessDate: 2009-11-30]
James Malone
BALB/cByJ
BALB is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/001026.html
http://jaxmice.jax.org/strain/001026.html
GM07055
James Malone
UO:0000040
mmol[accessedResource: UO:0000040][accessDate: 2009-11-30]
millimole
James Malone
BioportalImporter v.1.2
A substance unit equal to a thousandth of a mol or 10^[-3] mol.[accessedResource: UO:0000040][accessDate: 2009-11-30]
A millimole is a substance unit equal to a thousandth of a mol or 10^[-3] mol.
MAT:0000402
child[accessedResource: MAT:0000402][accessDate: 2009-11-30]
XAO:1000010
juvenile stage
James Malone
BioportalImporter v.1.2
EV:0300051
young adult[accessedResource: MAT:0000402][accessDate: 2009-11-30]
bicalutamide
An amide that has formula C18H14F4N2O4S.[accessedResource: CHEBI:3090][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
(2R)-N-[4-cyano-3-(trifluoromethyl)phenyl]-3-[(4-fluorophenyl)sulfonyl]-2-hydroxy-2-methylpropanamide[accessedResource: CHEBI:3090][accessDate: 2009-11-30]
CHEBI:3090
CHEBI:153671
endothelin-1
Tomasz Adamusiak
Ele Holloway
Tomasz Adamusiak
MO_753
data analyst
James Malone
Ele Holloway
NAMALWA
GeneRIF:12969506
DOID:2945
GeneRIF:15958670
BioportalImporter v.1.2
GeneRIF:15306699
SARS-CoV infection[accessedResource: DOID:2945][accessDate: 2009-11-30]
GeneRIF:15518555
A viral disorder characterized by high FEVER, dry COUGH, shortness of breath (DYSPNEA) or breathing difficulties, and atypical PNEUMONIA. A virus in the genus CORONAVIRUS is the suspected agent.[accessedResource: MSH:D045169][accessDate: 2009-11-30]
SNOMEDCT:398447004
MSH:D045169
GeneRIF:15840526
GeneRIF:15766558
GeneRIF:15187168
SARS-associated coronavirus[accessedResource: DOID:2945][accessDate: 2009-11-30]
Severe acute respiratory syndrome is a respiratory tract infection described as a severe respiratory illness that is transmitted especially by contact with infectious material (as respiratory droplets or body fluids), is caused by a single-stranded RNA virus of the genus Coronavirus (SARS-CoV), is characterized by fever, headache, body aches, a dry cough, and hypoxia and usually by pneumonia.[accessedResource: DOID:2945][accessDate: 2009-11-30]
GeneRIF:16299304
GeneRIF:15381116
GeneRIF:15749762
GeneRIF:15452265
GeneRIF:16195357
GeneRIF:15326590
James Malone
GeneRIF:15243926
ICD9:079.82
severe acute respiratory syndrome
GeneRIF:15788388
GeneRIF:14647384
SARS[accessedResource: DOID:2945][accessDate: 2009-11-30]
GeneRIF:15731040
GeneRIF:15992957
GeneRIF:15569689
GeneRIF:15345712
GeneRIF:15522242
CS57595 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158619&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158619&type=germplasm
CS57595
James Malone
The female reproductive part of a flower, consisting of stigma, style, and ovary.[accessedResource: BTO:0000072][accessDate: 2009-11-30]
carpel
PO:0009030
James Malone
MAT:0000516
BTO:0000072
BioportalImporter v.1.2
inhibitor
CHEBI:35222
A substance that diminishes the rate of a chemical reaction.[accessedResource: CHEBI:35222][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
prefrontal cortex
BTO:0002807
BioportalImporter v.1.2
FMAID:224850
Tomasz Adamusiak
James Malone
The prefrontal cortex is the anterior part of the frontal lobes of the brain, lying in front of the motor and premotor areas.[accessedResource: BTO:0002807][accessDate: 2009-11-30]
Prefrontal association cortex[accessedResource: FMAID:224850][accessDate: 2009-11-30]
BTO:0002675
Paired neuropil structure, situated postero-dorsally in the protocerebrum, which are thought to be crucial to olfactory associative learning and memory. Mushroom bodies are divided into: the calyx, closest to the cortex, which receives sensory interneuron afferents; a thick axon bundle called the pedunculus, which extends from the calyx to the base of the lobes; the mushroom body lobe system consisting of a vertical branch composed of two intertwined lobes (alpha and alpha') and a medial branch consisting of three parallel lobes (beta, beta' and gamma).[accessedResource: FBbt:00005801][accessDate: 2009-11-30]
BioportalImporter v.1.2
MAT:0000336
corpora pedunculata[accessedResource: FBbt:00005801][accessDate: 2009-11-30]
FBbt:00005801
The Drosophila mushroom bodies (MBs), paired brain structures composed of vertical and medial lobes, achieve their final organization at metamorphosis.[accessedResource: BTO:0002675][accessDate: 2009-11-30]
James Malone
mushroom body
SUDHL5
James Malone
Ele Holloway
BioportalImporter v.1.2
FMA:7133
ventricular septum
BTO:0002483
The partition that separates the left ventricle from the right ventricle, consisting of a muscular and a membranous part.[accessedResource: BTO:0002483][accessDate: 2009-11-30]
James Malone
interventricular septum
Cardiac septum which separates the right ventricle from the left ventricle.[accessedResource: FMA:7133][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158701&type=germplasm
James Malone
CS57677
CS57677 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158695&type=germplasm
The temperature that a biosource is exposed to.
exposure temperature
James Malone
James Malone
sensory system disease
A sensory system disease is a disease which has as location the sensory system.
An experiment in which sequencing technology (Solexa/454) is used to generate RNA sequence, analyse the transcibed regions of the genome, and or to quantitate transcript abundance
RNA-sequencing
ArrayExpress Production Team
RNA-seq
A concentration unit is a dervied unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
James Malone
BioportalImporter v.1.2
A derived unit which represents a standard measurement of how much of a given substance there is mixed with another substance.[accessedResource: UO:0000051][accessDate: 2009-11-30]
Jie Zheng
MO_61
concentration unit
MO_86
UO:0000051
Tomasz Adamusiak
second
s[accessedResource: UO:0000010][accessDate: 2009-11-30]
UO:0000010
James Malone
BioportalImporter v.1.2
A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.[accessedResource: UO:0000010][accessDate: 2009-11-30]
A second is a time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
FBbt:00001791
James Malone
dorsal histoblast nest abdominal
FMAID:19234
vasa deferentia[accessedResource: MAT:0000129][accessDate: 2009-11-30]
James Malone
TADS:0000486
Deferent duct[accessedResource: FMAID:19234][accessDate: 2009-11-30]
MA:0000413
MAT:0000129
SAEL:120
WBbt:0005337
EV:0100105
FBbt:00004968
BioportalImporter v.1.2
ductus deferens
EMAPA:18681
Vas deferens[accessedResource: FMAID:19234][accessDate: 2009-11-30]
OntologyMappingImporter following MAT:0000218
James Malone
plant sperm
PO:0000084
MAT:0000218
corneal epithelium
BioportalImporter v.1.2
NCIt:C12928
James Malone
Stratified squamous epithelium that covers the outer surface of the cornea. (MeSH)[accessedResource: NCIt:C12928][accessDate: 2009-11-30]
Posterior epithelium of cornea: the mesothelial layer covering the posterior surface of the posterior limiting lamina of the cornea; it was once believed to extend to the anterior surface of the stroma of the iris.[accessedResource: BTO:0000287][accessDate: 2009-11-30]
BTO:0000287
larval stage
tadpole stage[accessedResource: MAT:0000400][accessDate: 2009-11-30]
WBIs:0000023
FBdv:00005336
XAO:1000008
MAT:0000400
James Malone
BioportalImporter v.1.2
CS57824 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158848&type=germplasm
CS57824
http://www.arabidopsis.org/servlets/TairObject?id=1005158848&type=germplasm
James Malone
Chronic inflammatory and autoimmune disease in which the salivary and lacrimal glands undergo progressive destruction by lymphocytes and plasma cells resulting in decreased production of saliva and tears. The primary form, often called sicca syndrome, involves both KERATOCONJUNCTIVITIS SICCA and XEROSTOMIA. The secondary form includes, in addition, the presence of a connective tissue disease, usually rheumatoid arthritis.[accessedResource: MSH:D012859][accessDate: 2009-11-30]
NCIt:C26883
James Malone
Syndrome, Sjogren's[accessedResource: NCIt:C26883][accessDate: 2009-11-30]
Sicca (Sjogren's) syndrome[accessedResource: DOID:12894][accessDate: 2009-11-30]
Sjgren's syndrome (disorder)[accessedResource: DOID:12894][accessDate: 2009-11-30]
MSH:D012859
DOID:12894
SNOMEDCT:83901003
BioportalImporter v.1.2
Sjogren's disease[accessedResource: DOID:12894][accessDate: 2009-11-30]
sjogren syndrome
BioportalImporter v.1.2
insulin resistance
DOID:2017
diminished effectiveness of insulin in lowering plasma glucose levels[accessedResource: MP:0005331][accessDate: 2009-11-30]
MP:0005331
HP:0000855
Drug resistance to insulin (disorder)[accessedResource: DOID:2017][accessDate: 2009-11-30]
Tomasz Adamusiak
Ele Holloway
Heart muscle[accessedResource: FMAID:9462][accessDate: 2009-11-30]
FMAID:9462
Muscle of heart[accessedResource: FMAID:9462][accessDate: 2009-11-30]
cardiac muscle[accessedResource: MAT:0000453][accessDate: 2009-11-30]
XAO:0000065
ZFA:0001319
BTO:0000199
BTO:0000901
TAO:0001319
EMAPA:16208
EV:0100022
The principal muscle tissue of the vertebrate heart made up of striated fibers that appear to be separated from each other under the electron microscope but that function in long-term rhythmic contraction as if in protoplasmic continuity.[accessedResource: BTO:0000199][accessDate: 2009-11-30]
Muscle layer of organ which has as its parts the myocardium proper and the conducting system of the heart.[accessedResource: FMAID:9462][accessDate: 2009-11-30]
MA:0000080
James Malone
MAT:0000453
myocardium
The middle and thickest layer of the heart wall, composed of cardiac muscle.[accessedResource: BTO:0000901][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12228786
GeneRIF:15028053
GeneRIF:9722616
GeneRIF:15671429
GeneRIF:12824162
GeneRIF:15705965
GeneRIF:14651967
GeneRIF:14574075
GeneRIF:15467744
BioportalImporter v.1.2
GeneRIF:12554751
James Malone
GeneRIF:12920062
atrial fibrillation
auricular fibrillation[accessedResource: DOID:11276][accessDate: 2009-11-30]
MSH:D001281
DOID:11276
Abnormal cardiac rhythm that is characterized by rapid, uncoordinated firing of electrical impulses in the upper chambers of the heart (HEART ATRIA). In such case, blood cannot be effectively pumped into the lower chambers of the heart (HEART VENTRICLES). It is caused by abnormal impulse generation.[accessedResource: MSH:D001281][accessDate: 2009-11-30]
GeneRIF:15459252
GeneRIF:15289369
GeneRIF:15297374
GeneRIF:14678810
SNOMEDCT:49436004
GeneRIF:11748095
GeneRIF:15610520
GeneRIF:16301177
GeneRIF:11839628
GeneRIF:15249499
GeneRIF:12089346
GeneRIF:16377932
GeneRIF:12205093
GeneRIF:15023884
GeneRIF:12607777
GeneRIF:12808105
GeneRIF:12093745
GeneRIF:15368194
GeneRIF:12522251
GeneRIF:15922306
GeneRIF:12154005
ICD9:427.31
GeneRIF:14652651
GeneRIF:11956217
Atrial fibrillation (disorder)[accessedResource: DOID:11276][accessDate: 2009-11-30]
Tomasz Adamusiak
James Malone
Wistar
RGD:10044
NIFSTD:birnlex_320
http://phenome.jax.org/pub-cgi/phenome/mpdcgi?rtn=strains/details&strainid=7
NIFSTD:birnlex_393
C57BL/6J
C57BL/6J is a mouse strain as described in Jackson Laboratory http://phenome.jax.org/pub-cgi/phenome/mpdcgi?rtn=strains/details&strainid=7
Tomasz Adamusiak
James Malone
James Malone
Bornean Orangutan
Pongo pygmaeus
NCITaxon:9600
SNOMEDCT:46720004
DOID:9291
ICD9:214
GeneRIF:12970064
SNOMEDCT:93163002
A benign, usually painless, well-circumscribed lipomatous tumor composed of adipose tissue.[accessedResource: NCIt:C3192][accessDate: 2009-11-30]
James Malone
SNOMEDCT:189018005
SNOMEDCT:189776008
ICD9:214.9
SNOMEDCT:189013001
ICD9:214.8
lipoma
BioportalImporter v.1.2
ICD9:214.1
NCIt:C3192
BCBL-1
James Malone
Ele Holloway
Ewing Sarcoma/Peripheral Primitive Neuroectodermal Tumor[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
GeneRIF:15581626
NCIt:C4817
A small round cell tumor that lacks morphologic, immunohistochemical, and electron microscopic evidence of neuroectodermal differentiation. It represents one of the two ends of the spectrum called Ewing's sarcoma/peripheral neuroectodermal tumor. It affects mostly males under age 20, and it can occur in soft tissue or bone. Pain and the presence of a mass are the most common clinical symptoms.[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
BioportalImporter v.1.2
Ewing Family of Tumors[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
Ewing's sarcoma (morphologic abnormality)[accessedResource: DOID:3369][accessDate: 2009-11-30]
Ewing Sarcoma[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
DOID:3369
GeneRIF:12172985
Ewing's Family of Tumours[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
GeneRIF:11956622
Ewing's Family of Tumors[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
ES[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
Tumors of the Ewing's Family[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
GeneRIF:15282325
GeneRIF:11992404
GeneRIF:11313995
MSH:D012512
GeneRIF:15919668
GeneRIF:12527902
GeneRIF:15273724
Ewing's sarcoma/Peripheral Primitive Neuroectodermal tumor[accessedResource: DOID:3369][accessDate: 2009-11-30]
A malignant tumor of the bone which always arises in the medullary tissue, occurring more often in cylindrical bones. There are conspicuous foci of necrosis in association with irregular masses of small, regular, rounded or ovoid cells with very scanty cytoplasm. The tumor occurs usually before the age of 20, about twice as frequently in males as in females. (From Dorland, 27th ed; Stedman, 25th ed)[accessedResource: MSH:D012512][accessDate: 2009-11-30]
NCIt:C27291
GeneRIF:14528100
Ewing's Tumor[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
Ewing's sarcoma
James Malone
GeneRIF:12447693
GeneRIF:12054564
A spectrum of malignant tumors, affecting mostly males under age 20, characterized morphologically by the presence of small round cells. Ewing sarcoma and peripheral primitive neuroectodermal tumor represent the ends of a spectrum, with Ewing sarcoma lacking evidence of neural differentiation and the markers that characterize the peripheral primitive neuroectodermal tumor. Ewing sarcoma and peripheral primitive neuroectodermal tumor may share cytogenetic abnormalities, proto-oncogene expression, cell culture and immunohistochemical abnormalities. These tumors may occur in the soft tissues or the bones. Pain and the presence of a mass are the most common clinical symptoms.[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
GeneRIF:12557222
GeneRIF:15044653
GeneRIF:15328192
GeneRIF:15748890
GeneRIF:15310753
GeneRIF:15077162
A spectrum of malignant tumors, affecting mostly males under age 20, characterized morphologically by the presence of small round cells. Ewing sarcoma and peripheral primitive neuroectodermal tumor represent the ends of a spectrum, with Ewing sarcoma lacking evidence of neural differentiation and the markers that characterize the peripheral primitive neuroectodermal tumor. Ewing sarcoma and peripheral primitive neuroectodermal tumor may share cytogenetic abnormalities, proto-oncogene expression, cell culture and immunohistochemical abnormalities. These tumors may occur in the soft tissues or the bones. Pain and the presence of a mass are the most common clinical symptoms. -- 2004
[Source: NCI Thesaurus C27291]
GeneRIF:14977835
GeneRIF:12700668
SNOMEDCT:76909002
scott syndrome
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158715&type=germplasm
James Malone
CS57691 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158715&type=germplasm
CS57691
The life of an organism, a surgical operation as processual context for a nosocomical infection, the spatiotemporal context occupied by a process of cellular meiosis, the spatiotemporal region occupied by the development of a cancer tumor.
James Malone
A temporal entity is an entity that has temporal parts and that happens, unfolds or develops through time. An occurrent is something which exists over time, rather than existing completely at many times
Derived from BFO: Occurrent
temporal measurement
BioportalImporter v.1.2
James Malone
EMAPA:17550
Metepencephalon[accessedResource: FMAID:62004][accessDate: 2009-11-30]
BTO:0000041
EHDAA:7588
Organ component of neuraxis that has as its parts the medullary reticular formation, inferior olivary complex and cochlear nuclear complex, among other structures. Examples: There is only one medulla oblongata.[accessedResource: FMAID:62004][accessDate: 2009-11-30]
NIFSTD:birnlex_957
Tomasz Adamusiak
medulla oblongata
SAEL:65
SAEL:13
FMAID:62004
The part of the vertebrate brain that is continuous posteriorly with the spinal cord and that contains the centers controlling involuntary vital functions.[accessedResource: BTO:0000041][accessDate: 2009-11-30]
Bulb[accessedResource: FMAID:62004][accessDate: 2009-11-30]
MAT:0000111
EV:0100275
MA:0000206
ZFA:0000545
TAO:0000545
CHEBI:50792
James Malone
CHEBI:50792
estrogen receptor antagonist
Tunica mucosa (Endometrium)[accessedResource: FMAID:17742][accessDate: 2009-11-30]
EV:0100115
The mucous membrane lining the uterus.[accessedResource: BTO:0001422][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
endometrium
BTO:0001422
FMAID:17742
MAT:0000319
ampere
James Malone
BioportalImporter v.1.2
UO:0000011
An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.[accessedResource: UO:0000011][accessDate: 2009-11-30]
An ampere is an electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.
A[accessedResource: UO:0000011][accessDate: 2009-11-30]
MSH:D015440
BioportalImporter v.1.2
GeneRIF:15726416
Lepromatous leprosy (disorder)[accessedResource: DOID:10887][accessDate: 2009-11-30]
Lepromatous leprosy [type L][accessedResource: DOID:10887][accessDate: 2009-11-30]
James Malone
ICD9:030.0
GeneRIF:12743658
SNOMEDCT:21560005
GeneRIF:12445799
Type L leprosy[accessedResource: DOID:10887][accessDate: 2009-11-30]
lepromatous leprosy
A chronic communicable infection which is a principal or polar form of LEPROSY. This disorder is caused by MYCOBACTERIUM LEPRAE and produces diffuse granulomatous skin lesions in the form of nodules, macules, or papules. The peripheral nerves are involved symmetrically and neural sequelae occur in the advanced stage.[accessedResource: MSH:D015440][accessDate: 2009-11-30]
DOID:10887
James Malone
FMA:22532
tibialis anterior muscle
knee joint
James Malone
FMA:35175
knee
An assay which uses array based technology to determine information about nucleic acids or proteins
array assay
A gene expression hybridization on an Affymetrix U133 chip
James Malone
BTO:0001366
a primitive plant body of gametophytes that has not differentiated into roots, stems or leaves[accessedResource: MAT:0000248][accessDate: 2009-11-30]
thallus
MAT:0000248
BioportalImporter v.1.2
A plant body that is characteristic of thallophytes , lacks differentiation into distinct members (as stem, leaves, and roots), and does not grow from an apical point.[accessedResource: BTO:0001366][accessDate: 2009-11-30]
DOID:6188
iatrogenic Kaposi's sarcoma
Tomasz Adamusiak
Ele Holloway
ZFS:0000043
juvenile days 45-89
James Malone
James Malone
BioportalImporter v.1.2
conjunctival epithelium
NCIt:C32365
MSH:D049288
GeneRIF:12032588
GeneRIF:15385448
A heterogenous group of inherited muscular dystrophy that can be autosomal dominant or autosomal recessive. There are many forms (called LGMDs) involving genes encoding muscle membrane proteins such as the sarcoglycan (SARCOGLYCANS) complex that interacts with DYSTROPHIN. The disease is characterized by progressing wasting and weakness of the proximal muscles of arms and legs around the HIPS and SHOULDERS (the pelvic and shoulder girdles).[accessedResource: MSH:D049288][accessDate: 2009-11-30]
Erb's muscular dystrophy
GeneRIF:16344347
GeneRIF:15087111
SNOMEDCT:93153005
Leyden-Mbius muscular dystrophy[accessedResource: DOID:11724][accessDate: 2009-11-30]
GeneRIF:11891182
GeneRIF:14981167
limb-girdle muscular dystrophy
GeneRIF:11822024
James Malone
GeneRIF:15351423
Muscular Dystrophies, Limb-Girdle[accessedResource: DOID:11724][accessDate: 2009-11-30]
GeneRIF:12499399
DOID:11724
GeneRIF:12428213
GeneRIF:11741828
GeneRIF:14600260
BioportalImporter v.1.2
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158849&type=germplasm
CS57825 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158849&type=germplasm
CS57825
SUDHL6
James Malone
Ele Holloway
C2C12
James Malone
Wistar-Furth
RGD:1357955
James Malone
NCIt:C32161
James Malone
AV node[accessedResource: FMAID:9478][accessDate: 2009-11-30]
MAT:0000498
Subdivision of conducting system of heart which is located in the muscular part of the interatrial septum that is continuous with the atrioventricular bundle.[accessedResource: FMAID:9478][accessDate: 2009-11-30]
MA:0000095
FMAID:9478
A-V Node[accessedResource: NCIt:C32161][accessDate: 2009-11-30]
BioportalImporter v.1.2
Node of Tawara[accessedResource: FMAID:9478][accessDate: 2009-11-30]
atrioventricular node
ZFA:0000044
AV nodal muscle tissue[accessedResource: FMAID:9478][accessDate: 2009-11-30]
TAO:0005070
Atrioventricular nodal muscle tissue[accessedResource: FMAID:9478][accessDate: 2009-11-30]
Aschoff-Tawara node[accessedResource: FMAID:9478][accessDate: 2009-11-30]
http://www.informatics.jax.org/external/festing/mouse/docs/C57BL.shtml
NIFSTD:birnlex_398
C57BL/6 is a mouse strain as described in Jackson Laboratory http://www.informatics.jax.org/external/festing/mouse/docs/C57BL.shtml
Tomasz Adamusiak
James Malone
C57BL/6
James Malone
CS57692 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158716&type=germplasm
CS57692
http://www.arabidopsis.org/servlets/TairObject?id=1005158716&type=germplasm
Monoclonal Gammopathy of Unknown Significance[accessedResource: NCIt:C3996][accessDate: 2009-11-30]
DOID:7442
monoclonal gammopathy
SNOMEDCT:277577000
GeneRIF:14677065
James Malone
NCIt:C3996
Benign Monoclonal Gammopathy[accessedResource: NCIt:C3996][accessDate: 2009-11-30]
Monoclonal gammopathy of undetermined significance (morphologic abnormality)[accessedResource: DOID:7442][accessDate: 2009-11-30]
Monoclonal Gammopathy of Undetermined Significance[accessedResource: NCIt:C3996][accessDate: 2009-11-30]
BioportalImporter v.1.2
monoclonal gammopathy of uncertain significance[accessedResource: DOID:7442][accessDate: 2009-11-30]
A plasma cell disorder in which an abnormal amount of a single immunoglobulin is present in the serum. Up to 25% of cases of monoclonal gammopathy of undetermined significance (MGUS) progress to a B-cell malignancy or myeloma. MGUS may occur in conjunction with various carcinomas, chronic inflammatory and infectious conditions, and other diseases.
[Source: NCI Thesaurus C3996]
SNOMEDCT:35601003
Monoclonal gammopathy of uncertain significance (disorder)[accessedResource: DOID:7442][accessDate: 2009-11-30]
MGUS[accessedResource: NCIt:C3996][accessDate: 2009-11-30]
Rattus rattus
NCITaxon:10117
James Malone
black rat
James Malone
blastula dome
ZFS:0000015
James Malone
BioportalImporter v.1.2
A unit of molarity is a derived concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.
A derived concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.[accessedResource: UO:0000061][accessDate: 2009-11-30]
unit of molarity
UO:0000061
James Malone
Ele Holloway
BC-5
FBbt:00005526
dorsal epidermis primordium
James Malone
FUM1 is a yeast strain as described in http://www.genedb.org/genedb/Search?organism=cerevisiae&name=YPL262W&isid=true
James Malone
FUM1
http://www.genedb.org/genedb/Search?organism=cerevisiae&name=YPL262W&isid=true
Tomasz Adamusiak
James Malone
Jie Zheng
MO_372
virus
http://purl.org/obo/owl/NCBITaxon#NCBITaxon_10239
James Malone
Tuberculoid leprosy [type T][accessedResource: DOID:1025][accessDate: 2009-11-30]
BioportalImporter v.1.2
Type T leprosy[accessedResource: DOID:1025][accessDate: 2009-11-30]
SNOMEDCT:70143003
ICD9:030.1
MSH:D015441
A principal or polar form of LEPROSY in which the skin lesions are few and are sharply demarcated. Peripheral nerve involvement is pronounced and may be severe. Unlike lepromatous leprosy (LEPROSY, LEPROMATOUS), the lepromin test is positive. Tuberculoid leprosy is rarely a source of infection to others.[accessedResource: MSH:D015441][accessDate: 2009-11-30]
tuberculoid leprosy
DOID:1025
Smooth leprosy[accessedResource: DOID:1025][accessDate: 2009-11-30]
The structure into which a haploid microspore develops; contains a halpoid tube nucleus and two haploid sperm nuclei at maturity.[accessedResource: BTO:0001097][accessDate: 2009-11-30]
BTO:0001097
PO:0020097
James Malone
MAT:0000216
BioportalImporter v.1.2
pollen
James Malone
BioportalImporter v.1.2
NIFSTD:nifext_5156
Tomasz Adamusiak
estrogen
A steroid hormone that stimulates or controls the development and maintenance of female sex characteristics in mammals by binding to oestrogen receptors. The oestrogens are named for their importance in the oestrous cycle.[accessedResource: CHEBI:50114][accessDate: 2009-11-30]
CHEBI:50114
The stage in life when sex glands become functional. It is characterized by the development of secondary sex characteristics, reproductive functions, and growth spurts.[accessedResource: NCIt:C82393][accessDate: 2009-11-30]
Tomasz Adamusiak
James Malone
BioportalImporter v.1.2
puberty
NCIt:C82393
DNA sequencing
An assay in which -sequencing technology (e.g. Solexa/454) is used to determine NDNA sequence
DNA-seq
ArrayExpress Production Team
James Malone
BioportalImporter v.1.2
topoisomerase II inhibitor
CHEBI:50750
An inhibitor of DNA topoisomerase II, which catalyses ATP-dependent breakage of both strands of DNA, passage of the unbroken strands through the breaks, and rejoining of the broken strands.[accessedResource: CHEBI:50750][accessDate: 2009-11-30]
CHEBI:50750
TAO:0000151
MAT:0000117
EMAPA:16579
BioportalImporter v.1.2
The first kidney is all vertebrates - it is transitional and disappears soon after it has formed.[accessedResource: MAT:0000117][accessDate: 2009-11-30]
1. The primordial kidney; a vestigial excretory structure or its rudiments developing in the embryo at four weeks, before the mesonephros. Although nonfunctional, its duct is later used by the mesonephros, which arises caudal to it.n2. The definitive excretory organ of primitive fishes.[accessedResource: BTO:0001541][accessDate: 2009-11-30]
EHDAA:1017
MFO:0003340
pronephros
James Malone
ZFA:0000151
BTO:0001541
XAO:0002000
EV:3000635
James Malone
Ele Holloway
SUDHL10
GeneRIF:15556291
GeneRIF:12850481
ICD9:282.69
BioportalImporter v.1.2
GeneRIF:15834635
SNOMEDCT:127040003
GeneRIF:14579408
GeneRIF:15153712
DOID:10923
GeneRIF:11869935
GeneRIF:15297857
ICD9:282.6
GeneRIF:15388579
GeneRIF:15609334
GeneRIF:12677174
ICD9:282.68
GeneRIF:15556687
SNOMEDCT:191195005
SNOMEDCT:191199004
GeneRIF:15023184
GeneRIF:14967817
GeneRIF:12773623
GeneRIF:12714517
GeneRIF:15271798
GeneRIF:12549821
GeneRIF:12673836
GeneRIF:12928439
sickle cell disease
Sickle Cell Anemia[accessedResource: NCIt:C34383][accessDate: 2009-11-30]
GeneRIF:14683458
A blood disorder characterized by the appearance of sickle-shaped red blood cells and anemia.[accessedResource: NCIt:C34383][accessDate: 2009-11-30]
GeneRIF:12601490
NCIt:C34383
GeneRIF:15586174
GeneRIF:15855323
ICD9:282.60
James Malone
GeneRIF:15662557
GeneRIF:14755370
BioportalImporter v.1.2
macroglobulinemia
primary macroglobulinemia[accessedResource: DOID:9080][accessDate: 2009-11-30]
Waldenstrom's macroglobulinemia (morphologic abnormality)[accessedResource: DOID:9080][accessDate: 2009-11-30]
Waldenstrom's macroglob'naemia[accessedResource: DOID:9080][accessDate: 2009-11-30]
Tomasz Adamusiak
Macroglobulinemia NOS (disorder)[accessedResource: DOID:9080][accessDate: 2009-11-30]
Ele Holloway
Waldenstrom's macroglobulinaemia[accessedResource: DOID:9080][accessDate: 2009-11-30]
Waldenstrm macroglobulinemia (disorder)[accessedResource: DOID:9080][accessDate: 2009-11-30]
Waldenstrom's macroglobulinemia (disorder)[accessedResource: DOID:9080][accessDate: 2009-11-30]
DOID:9080
Lymphoplasmacytic Lymphoma/Waldenstrom Macroglobulinemia[accessedResource: DOID:9080][accessDate: 2009-11-30]
Macroglobulinemia (disorder)[accessedResource: DOID:9080][accessDate: 2009-11-30]
larval day 5
James Malone
ZFS:0000037
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158850&type=germplasm
CS57826
CS57826 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158850&type=germplasm
NIFSTD:birnlex_982
James Malone
BTO:0002434
Tomasz Adamusiak
A large raphe nucleus extending from the anterior part of the pons through the mesencephalon; its neurons are serotoninergic.[accessedResource: BTO:0002434][accessDate: 2009-11-30]
BioportalImporter v.1.2
dorsal raphe nucleus
m[accessedResource: UO:0000008][accessDate: 2009-11-30]
UO:0000008
James Malone
BioportalImporter v.1.2
Jie Zheng
A meter is a length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
Tomasz Adamusiak
A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.[accessedResource: UO:0000008][accessDate: 2009-11-30]
metre
MO_367
meter
male gamete
BioportalImporter v.1.2
sperm
FMAID:67338
FBbt:00004954
SAEL:93
Mature sperm cell[accessedResource: FMAID:67338][accessDate: 2009-11-30]
Spermatozoon[accessedResource: FMAID:67338][accessDate: 2009-11-30]
ZFA:0009006
A mature, haploid male gamete.[accessedResource: FBbt:00004954][accessDate: 2009-11-30]
WBbt:0005321
MAT:0000131
James Malone
spermatazoon
MA:0002765
Definitive germ cell of the male sex.[accessedResource: FMAID:67338][accessDate: 2009-11-30]
ZFS:0000010
blastula 512-cell
James Malone
RGD:1358153
James Malone
Copenhagen
A stem cell that can give rise to mulitple lineages of cells.[accessedResource: CL:0000048][accessDate: 2009-11-30]
multipotent stem cell
multipotent adult progenitor cell
multi fate stem cell[accessedResource: CL:0000048][accessDate: 2009-11-30]
CL:0000048
James Malone
BioportalImporter v.1.2
MO_498
atmosphere
The atmospheric conditions used to culture or grow an organism.
Tomasz Adamusiak
Jie Zheng
James Malone
BT483
James Malone
Follicular Adenoma of the Thyroid[accessedResource: NCIt:C3684][accessDate: 2009-11-30]
Follicular Adenoma of Thyroid[accessedResource: NCIt:C3684][accessDate: 2009-11-30]
James Malone
GeneRIF:15887854
SNOMEDCT:55021007
BioportalImporter v.1.2
follicular thyroid adenoma
NCIt:C3684
Follicular Adenoma of Thyroid Gland[accessedResource: NCIt:C3684][accessDate: 2009-11-30]
Follicular Adenoma of the Thyroid Gland[accessedResource: NCIt:C3684][accessDate: 2009-11-30]
GeneRIF:14666683
A benign epithelial tumor with a glandular organization.[accessedResource: MSH:D000236][accessDate: 2009-11-30]
GeneRIF:11994357
Thyroid follicular adenoma (disorder)[accessedResource: DOID:6204][accessDate: 2009-11-30]
Follicular adenoma (morphologic abnormality)[accessedResource: DOID:6204][accessDate: 2009-11-30]
Follicular Adenoma[accessedResource: NCIt:C3684][accessDate: 2009-11-30]
MSH:D000236
DOID:6204
GeneRIF:14576819
Thyroid Gland Follicular Adenoma[accessedResource: NCIt:C3684][accessDate: 2009-11-30]
SNOMEDCT:255034006
James Malone
dorsal ectoderm primordium
FBbt:00005527
Daudi Burkitt's lymphoma cell line
James Malone
A molar is a unit of molarity which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).[accessedResource: UO:0000062][accessDate: 2009-11-30]
M[accessedResource: UO:0000062][accessDate: 2009-11-30]
BioportalImporter v.1.2
MO_936
Jie Zheng
Tomasz Adamusiak
molar
James Malone
UO:0000062
James Malone
Duplication with acute promyelocytic leukemia (EFO_0000224)
1.5
true
obsolete_promyelocytic leukemia
James Malone
joint component
NCITaxon:4932
James Malone
baker's yeast
Saccharomyces cerevisiae
kilogram
MO_846
James Malone
A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.[accessedResource: UO:0000009][accessDate: 2009-11-30]
kg[accessedResource: UO:0000009][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
A kilogram is a mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
UO:0000009
Jie Zheng
DOID:1023
Midborderline leprosy (disorder)[accessedResource: DOID:1023][accessDate: 2009-11-30]
BioportalImporter v.1.2
ICD9:030.3
James Malone
Borderline leprosy [group B][accessedResource: DOID:1023][accessDate: 2009-11-30]
Borderline or dimorphous leprosy[accessedResource: DOID:1023][accessDate: 2009-11-30]
SNOMEDCT:400154003
SNOMEDCT:400008009
borderline leprosy
A form of LEPROSY in which there are clinical manifestations of both principal types (lepromatous and tuberculoid). The disease may shift toward one of these two polar or principal forms.[accessedResource: MSH:D015439][accessDate: 2009-11-30]
Borderline leprosy (disorder)[accessedResource: DOID:1023][accessDate: 2009-11-30]
MSH:D015439
NIFSTD:birnlex_2117
experimental process
experiment
James Malone
Ele Holloway
SUDHL16
James Malone
BioportalImporter v.1.2
NCIt:C33346
Posterior central gyrus[accessedResource: FMA:61896][accessDate: 2009-11-30]
postcentral gyrus
FMA:61896
Postcentral convolution[accessedResource: FMA:61896][accessDate: 2009-11-30]
Postrolandic gyrus[accessedResource: FMA:61896][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
A medial cleft or depression dividing the left and right protocerebrum and containing numerous large and small somata of neurosecretory and neuromodulatory neurons.[accessedResource: FBbt:00005802][accessDate: 2009-11-30]
pars intercerebralis
MAT:0000337
FBbt:00005802
CHEBI:50739
estrogen receptor modulator
James Malone
BioportalImporter v.1.2
CHEBI:50739
A substance that possess antiestrogenic actions but can also produce estrogenic effects as well. It acts as complete or partial agonist or as antagonist. It can be either steroidal or nonsteroidal in structure.[accessedResource: CHEBI:50739][accessDate: 2009-11-30]
CHEBI:16236
ethanol
Tomasz Adamusiak
BioportalImporter v.1.2
NIFSTD:nlx_chem_20090205
James Malone
An ethanol that has formula C2H6O.[accessedResource: CHEBI:16236][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158851&type=germplasm
CS57827
CS57827 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158851&type=germplasm
James Malone
Tomasz Adamusiak
Ele Holloway
internal carotid artery stenosis
SNOMEDCT:233964008
decidua basalis
James Malone
BioportalImporter v.1.2
NCIt:C32426
MSH:D018279
signet ring cell carcinoma
NCIt:C3774
Signet ring carcinoma NOS (morphologic abnormality)[accessedResource: DOID:3493][accessDate: 2009-11-30]
Signet Ring cell Adenocarcinoma[accessedResource: DOID:3493][accessDate: 2009-11-30]
GeneRIF:11788899
James Malone
A poorly differentiated adenocarcinoma in which the nucleus is pressed to one side by a cytoplasmic droplet of mucus. It usually arises in the gastrointestinal system.[accessedResource: MSH:D018279][accessDate: 2009-11-30]
BioportalImporter v.1.2
Signet ring cell carcinoma (morphologic abnormality)[accessedResource: DOID:3493][accessDate: 2009-11-30]
DOID:3493
A usually aggressive, poorly differentiated invasive adenocarcinoma characterized by the presence of malignant glandular cells in which the nucleus is pressed to one side by the presence of intracytoplasmic mucus. It may arise from the stomach, small and large intestine, ampulla of Vater, appendix, gallbladder, pancreas, lung, bladder, breast, and prostate gland.
[Source: NCI Thesaurus C3774]
SNOMEDCT:87737001
SNOMEDCT:189702009
James Malone
larval day 4
ZFS:0000036
The slender tube formed by the pollen grain that penetrates an ovule and releases the male gametes.[accessedResource: BTO:0001276][accessDate: 2009-11-30]
MAT:0000217
BTO:0001276
James Malone
pollen tube
PO:0006345
BioportalImporter v.1.2
James Malone
SAEL:36
BTO:0000408
MA:0000397
epididymus
EV:0100103
MAT:0000130
BioportalImporter v.1.2
A system of ductules emerging posteriorly from the testis that holds sperm during maturation and that forms a tangled mass before uniting into a single coiled duct which is continuous with the vas deferens.[accessedResource: BTO:0000408][accessDate: 2009-11-30]
FMAID:18255
EMAPA:19290
James Malone
Ele Holloway
BCKN-1
mouse strain
Strain or line specific to mouse
James Malone
BioportalImporter v.1.2
EHDAA:8677
James Malone
EMAPA:18248
MA:0000139
FMAID:5034
SAEL:63
lymphatic system
atopic eczema
SNOMEDCT:200769008
ICD9:691.8
ICD9:691
DOID:2771
James Malone
BioportalImporter v.1.2
blastula 30%-epiboly
James Malone
ZFS:0000016
James Malone
BT549
Ewing's Family of Tumors[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
Ewing's sarcoma (morphologic abnormality)[accessedResource: DOID:3369][accessDate: 2009-11-30]
duplicate of EFO_0000174 Ewing's sarcoma
GeneRIF:14977835
MSH:D012512
GeneRIF:12700668
Ewing Sarcoma/Peripheral Primitive Neuroectodermal Tumor[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
Ewing's sarcoma/Peripheral Primitive Neuroectodermal tumor[accessedResource: DOID:3369][accessDate: 2009-11-30]
GeneRIF:11956622
A spectrum of malignant tumors, affecting mostly males under age 20, characterized morphologically by the presence of small round cells. Ewing sarcoma and peripheral primitive neuroectodermal tumor represent the ends of a spectrum, with Ewing sarcoma lacking evidence of neural differentiation and the markers that characterize the peripheral primitive neuroectodermal tumor. Ewing sarcoma and peripheral primitive neuroectodermal tumor may share cytogenetic abnormalities, proto-oncogene expression, cell culture and immunohistochemical abnormalities. These tumors may occur in the soft tissues or the bones. Pain and the presence of a mass are the most common clinical symptoms.[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
ES[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
BioportalImporter v.1.2
Ewing Family of Tumors[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
GeneRIF:11313995
GeneRIF:15919668
Ewing Sarcoma[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
GeneRIF:15328192
Ewing's Tumor[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
NCIt:C27291
GeneRIF:15581626
GeneRIF:14528100
GeneRIF:15748890
GeneRIF:12447693
A small round cell tumor that lacks morphologic, immunohistochemical, and electron microscopic evidence of neuroectodermal differentiation. It represents one of the two ends of the spectrum called Ewing's sarcoma/peripheral neuroectodermal tumor. It affects mostly males under age 20, and it can occur in soft tissue or bone. Pain and the presence of a mass are the most common clinical symptoms.[accessedResource: NCIt:C4817][accessDate: 2009-11-30]
Ewing's Family of Tumours[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
GeneRIF:12557222
Ewings sarcoma[accessedResource: DOID:3369][accessDate: 2009-11-30]
Tumors of the Ewing's Family[accessedResource: NCIt:C27291][accessDate: 2009-11-30]
true
GeneRIF:11992404
GeneRIF:12172985
GeneRIF:12527902
A spectrum of malignant tumors, affecting mostly males under age 20, characterized morphologically by the presence of small round cells. Ewing sarcoma and peripheral primitive neuroectodermal tumor represent the ends of a spectrum, with Ewing sarcoma lacking evidence of neural differentiation and the markers that characterize the peripheral primitive neuroectodermal tumor. Ewing sarcoma and peripheral primitive neuroectodermal tumor may share cytogenetic abnormalities, proto-oncogene expression, cell culture and immunohistochemical abnormalities. These tumors may occur in the soft tissues or the bones. Pain and the presence of a mass are the most common clinical symptoms. -- 2004
[Source: NCI Thesaurus C27291]
obsolete_Ewing family tumor
NCIt:C4817
GeneRIF:12054564
GeneRIF:15044653
DOID:3369
GeneRIF:15282325
SNOMEDCT:76909002
GeneRIF:15273724
A malignant tumor of the bone which always arises in the medullary tissue, occurring more often in cylindrical bones. There are conspicuous foci of necrosis in association with irregular masses of small, regular, rounded or ovoid cells with very scanty cytoplasm. The tumor occurs usually before the age of 20, about twice as frequently in males as in females. (From Dorland, 27th ed; Stedman, 25th ed)[accessedResource: MSH:D012512][accessDate: 2009-11-30]
1.8
GeneRIF:15310753
GeneRIF:15077162
James Malone
true
James Malone
Duplication: use class EFO_0001988
obsolete_lateral geniculate nucleus
MA:0000869
1.6
Jie Zheng
A millimolar is a unit of molarity which is equal to one thousandth of a molar or 10^-3 M.
A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.[accessedResource: UO:0000063][accessDate: 2009-11-30]
UO:0000063
mM[accessedResource: UO:0000063][accessDate: 2009-11-30]
Tomasz Adamusiak
MO_509
James Malone
BioportalImporter v.1.2
millimolar
James Malone
dorsal ectoderm anlage in statu nascendi
FBbt:00005832
1.5
true
obsolete_precursor T lymphoblastic leukemia
obsolete - duplication with T cell acute lymphoblastic
leukemia EFO_0000209 use this instead
James Malone
NCITaxon:4896
fission yeast
S. pombe
Schizosaccharomyces pombe
James Malone
Wistar-Kyoto
RGD:1359002
James Malone
Cocaine drug dependence NOS (disorder)[accessedResource: DOID:9975][accessDate: 2009-11-30]
Cocaine dependence, unspecified use[accessedResource: DOID:9975][accessDate: 2009-11-30]
DOID:9975
Cocaine dependence (disorder)[accessedResource: DOID:9975][accessDate: 2009-11-30]
cocaine addiction
Mental and behavioral disorder due to use of cocaine: dependence syndrome (disorder)[accessedResource: DOID:9975][accessDate: 2009-11-30]
Cocaine Dependence[accessedResource: DOID:9975][accessDate: 2009-11-30]
Cocaine dependence, unspecified (disorder)[accessedResource: DOID:9975][accessDate: 2009-11-30]
Ele Holloway
Tomasz Adamusiak
BioportalImporter v.1.2
UO:0000006
James Malone
BioportalImporter v.1.2
substance unit
A substance unit is a base unit which is a standardised quantity of an element or compound with uniform composition.
A base unit which is a standardized quantity of an element or compound with uniform composition.[accessedResource: UO:0000006][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
lung endoderm
colorectal carcinoma
James Malone
OntologyMappingImporter following MAT:0000220
PO:0020147
apical root meristem
MAT:0000220
ZEA:0015150
James Malone
ZFS:0000040
James Malone
larval day 14-20
NCIt:C32836
FMA:3947
internal carotid artery
James Malone
BioportalImporter v.1.2
CS57828
CS57828 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158852&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158852&type=germplasm
James Malone
retinal ganglion
James Malone
Ele Holloway
SR
The portion of the pharynx that lies below the upper edge of the epiglottis and opens into the larynx and esophagus.[accessedResource: BTO:0001740][accessDate: 2009-11-30]
NCIt:C12246
laryngopharynx
James Malone
Hypopharynx[accessedResource: NCIt:C12246][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0001740
The lower part of the pharynx that connects to the esophagus.[accessedResource: NCIt:C12246][accessDate: 2009-11-30]
James Malone
RGD:1578695
Syracuse High Avoidance
Time of survival is an information entity which is about the length of time a material entity has survived after some adverse event, such as infection from a disease.
PERSON: James Malone
time of survival
James Malone
ml/l[accessedResource: UO:0000207][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
UO:0000207
A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.[accessedResource: UO:0000207][accessDate: 2009-11-30]
A milliliter per liter is a unit of concentrationdefined as a volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
milliliter per liter
placenta
MAT:0000279
BTO:0001078
EVM:2000256
EV:3000466
James Malone
BioportalImporter v.1.2
SAEL:84
EV:0100119
The vascular organ in mammals except monotremes and marsupials that unites the fetus to the maternal uterus and mediates its metabolic exchanges through a more or less intimate association of uterine mucosal with chorionic and usually allantoic tissues; also: an analogous organ in another animal.[accessedResource: BTO:0001078][accessDate: 2009-11-30]
MA:0000386
FMAID:63934
gastric cancer
BioportalImporter v.1.2
ICD9:230.2
DOID:9138
gastric carcinoma
Carcinoma in situ of stomach[accessedResource: DOID:9138][accessDate: 2009-11-30]
Carcinoma in situ of stomach (disorder)[accessedResource: DOID:9138][accessDate: 2009-11-30]
James Malone
Gastric Carcinoma in situ[accessedResource: DOID:9138][accessDate: 2009-11-30]
Carcinoma in situ of stomach NOS (disorder)[accessedResource: DOID:9138][accessDate: 2009-11-30]
A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.[accessedResource: CL:0000084][accessDate: 2009-11-30]
BioportalImporter v.1.2
T cell
pancreatic T effector cell
Th2
Th1
T lymphocyte[accessedResource: CL:0000084][accessDate: 2009-11-30]
James Malone
CL:0000084
NIFSTD:birnlex_1031
BioportalImporter v.1.2
tegmentum
James Malone
MA:0000212
Tegmentum of midbrain[accessedResource: FMAID:62393][accessDate: 2009-11-30]
Midbrain tegmentum[accessedResource: FMAID:62393][accessDate: 2009-11-30]
Subdivision of the midbrain lying anterior to the tectum and posterior to the substantia nigra and cerebral peduncle.[accessedResource: FMAID:62393][accessDate: 2009-11-30]
Tomasz Adamusiak
ZFA:0001354
TAO:0001354
Mesencephalic tegmentum[accessedResource: FMAID:62393][accessDate: 2009-11-30]
EMAPA:18215
MAT:0000452
FMAID:62393
Duplicate with astrocytic tumor (EFO_0000272)
GeneRIF:12393263
Astrocytoma of brain (disorder)[accessedResource: DOID:3069][accessDate: 2009-11-30]
GeneRIF:12829373
GeneRIF:14729615
GeneRIF:12023424
true
GeneRIF:15494521
Astroglioma[accessedResource: NCIt:C6958][accessDate: 2009-11-30]
GeneRIF:14654927
Astrocytoma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:3069][accessDate: 2009-11-30]
GeneRIF:12740910
GeneRIF:14603438
GeneRIF:15652402
GeneRIF:11922706
GeneRIF:12237771
Astrocytoma[accessedResource: DOID:3069][accessDate: 2009-11-30]
GeneRIF:15643521
DOID:3069
Neoplasms of the brain and spinal cord derived from glial cells which vary from histologically benign forms to highly anaplastic and malignant tumors. Fibrillary astrocytomas are the most common type and may be classified in order of increasing malignancy (grades I through IV). In the first two decades of life, astrocytomas tend to originate in the cerebellar hemispheres; in adults, they most frequently arise in the cerebrum and frequently undergo malignant transformation. (From Devita et al., Cancer: Principles and Practice of Oncology, 5th ed, pp2013-7; Holland et al., Cancer Medicine, 3d ed, p1082)[accessedResource: MSH:D001254][accessDate: 2009-11-30]
GeneRIF:12850541
GeneRIF:15973775
SNOMEDCT:38713004
MSH:D001254
GeneRIF:12203396
SNOMEDCT:254938000
GeneRIF:12916719
GeneRIF:12819022
GeneRIF:12385586
James Malone
GeneRIF:12747804
GeneRIF:12168116
GeneRIF:12133571
GeneRIF:11836615
NCIt:C6958
GeneRIF:12077339
Astrocytic Tumor[accessedResource: NCIt:C6958][accessDate: 2009-11-30]
A glial tumor of the brain or spinal cord showing astrocytic differentiation. It includes the following clinicopathological entities: pilocytic astrocytoma, diffuse astrocytoma, anaplastic astrocytoma, pleomorphic xanthoastrocytoma, subependymal giant cell astrocytoma, and glioblastoma.
[Source: NCI Thesaurus C6958]
GeneRIF:12185598
GeneRIF:11958417
GeneRIF:12519873
obsolete_astrocytic tumor
GeneRIF:12435805
GeneRIF:15799819
GeneRIF:11783119
Astrocytic Neoplasm[accessedResource: NCIt:C6958][accessDate: 2009-11-30]
GeneRIF:12111824
GeneRIF:16103883
GeneRIF:15289301
1.5
BioportalImporter v.1.2
GeneRIF:15902504
GeneRIF:15178645
fibromatosis
A poorly circumscribed neoplasm arising from the soft tissues. It is characterized by the presence of spindle-shaped fibroblasts and an infiltrative growth pattern.[accessedResource: C3042][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
C3042
James Malone
Ele Holloway
HT
FMAID:9671
James Malone
EV:0100049
A clear, watery, sometimes faintly yellowish fluid derived from body tissues that contains white blood cells and circulates throughout the lymphatic system, returning to the venous bloodstream through the thoracic duct. Lymph acts to remove bacteria and certain proteins from the tissues, transport fat from the small intestine, and supply mature lymphocytes to the blood.[accessedResource: BTO:0000855][accessDate: 2009-11-30]
BTO:0000855
BioportalImporter v.1.2
Transudate contained in the lumen of lymphatic vessel.[accessedResource: FMAID:9671][accessDate: 2009-11-30]
MAT:0000055
lymph
MA:0002520
James Malone
BioportalImporter v.1.2
cervix epithelium
NCIt:C49218
MA:0001724
James Malone
blastula 256-cell
ZFS:0000009
NCIt:C12346
An acinous gland that is about the size and shape of an almond, secretes tears, and is situated laterally and superiorly to the bulb of the eye in a shallow depression on the inner surface of the frontal bone.[accessedResource: BTO:0000044][accessDate: 2009-11-30]
lacrimal gland
Paired, almond-shaped exocrine glands situated superior and posterior to each orbit of the eye that produce and secrete the watery serous component of tears.[accessedResource: NCIt:C12346][accessDate: 2009-11-30]
James Malone
BTO:0000044
BioportalImporter v.1.2
A luminous intensity unit is a base unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.
A base unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.[accessedResource: UO:0000007][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
UO:0000007
luminous intensity unit
pancreatic endoderm
Tomasz Adamusiak
Jie Zheng
James Malone
Split into two terms. RNA-seq and DNA-seq
1.8
An experiment in which re-sequencing technology (Solexa/454) is used to generate sequence which can be used to determine nucleic acid sequence, analyse the transcibed regions of the genome, or to quantitate transcript abundance
obsolete_re-sequencing
ArrayExpress production team
ZFS:0000038
larval day 6
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158858&type=germplasm
CS57834
James Malone
CS57834 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158858&type=germplasm
ChIP-seq is an assay in which chromatin immunoprecipitation with high throughput sequencing to identify the cistrome of DNA-associated proteins.
Helen Parkinson
ChIP-seq
http://en.wikipedia.org/wiki/Chip-Sequencing
FMA:10635
James Malone
external carotid artery
ST486
James Malone
Ele Holloway
The probabilty of continuance of life or existence especially under adverse conditions; Probably need a parent survival metric or similar
James Malone
survival probability
James Malone
duplicate of EFO_0001220
1.8
true
obsolete_MOLT4
James Malone
cervical neck region
Any of the rounded masses of lymphoid tissue that are surrounded by a capsule of connective tissue, are distributed along the lymphatic vessels, and contain numerous lymphocytes which filter the flow of lymph.[accessedResource: BTO:0000784][accessDate: 2009-11-30]
James Malone
MA:00000139
EV:0100050
BioportalImporter v.1.2
lymph node
BTO:0000784
FMAID:5034
MAT:0000442
Syracuse Low Avoidance
James Malone
RGD:1578703
Neuraxis tectum[accessedResource: FMAID:83902][accessDate: 2009-11-30]
TAO:0001353
EMAPA:19051
tectum
MA:0000211
James Malone
ZFA:0001353
MFO:0080060
BTO:0001793
BioportalImporter v.1.2
Midbrain tectum[accessedResource: FMAID:83902][accessDate: 2009-11-30]
The dorsal part of the midbrain including the corpora quadrigemina.[accessedResource: BTO:0001793][accessDate: 2009-11-30]
FMAID:83902
MAT:0000451
CL:0000477
follicle cell
James Malone
duplicate of T-cell lymphoblastic lymphoma EFO_0000209
James Malone
obsolete_T-cell lymphoblastic lymphoma
true
1.8
density unit
UO:0000182
A derived unit which is a standard measure of the influence exerted by some mass.[accessedResource: UO:0000182][accessDate: 2009-11-30]
A density unit is a derived unit which is a standard measure of the influence exerted by some mass.
James Malone
BioportalImporter v.1.2
Astrocytoma of brain (disorder)[accessedResource: DOID:3069][accessDate: 2009-11-30]
GeneRIF:15799819
GeneRIF:12023424
GeneRIF:12111824
Tomasz Adamusiak
GeneRIF:15178645
Astroglioma[accessedResource: NCIt:C6958][accessDate: 2009-11-30]
NIFSTD:birnlex_12619
GeneRIF:14729615
Astrocytoma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:3069][accessDate: 2009-11-30]
GeneRIF:12740910
GeneRIF:14603438
GeneRIF:15652402
GeneRIF:15494521
GeneRIF:11922706
GeneRIF:14654927
GeneRIF:15643521
DOID:3069
GeneRIF:15973775
SNOMEDCT:38713004
SNOMEDCT:254938000
GeneRIF:12916719
GeneRIF:12819022
GeneRIF:12385586
GeneRIF:12747804
GeneRIF:12168116
GeneRIF:12237771
Neoplasms of the brain and spinal cord derived from glial cells which vary from histologically benign forms to highly anaplastic and malignant tumors. Fibrillary astrocytomas are the most common type and may be classified in order of increasing malignancy (grades I through IV). In the first two decades of life, astrocytomas tend to originate in the cerebellar hemispheres; in adults, they most frequently arise in the cerebrum and frequently undergo malignant transformation. (From Devita et al., Cancer: Principles and Practice of Oncology, 5th ed, pp2013-7; Holland et al., Cancer Medicine, 3d ed, p1082)[accessedResource: MSH:D001254][accessDate: 2009-11-30]
A glial tumor of the brain or spinal cord showing astrocytic differentiation. It includes the following clinicopathological entities: pilocytic astrocytoma, diffuse astrocytoma, anaplastic astrocytoma, pleomorphic xanthoastrocytoma, subependymal giant cell astrocytoma, and glioblastoma.
[Source: NCI Thesaurus C6958]
GeneRIF:12185598
GeneRIF:12519873
Astrocytic Tumor[accessedResource: NCIt:C6958][accessDate: 2009-11-30]
GeneRIF:12850541
MSH:D001254
astrocytoma
GeneRIF:12203396
GeneRIF:12435805
GeneRIF:11783119
James Malone
GeneRIF:16103883
GeneRIF:15289301
BioportalImporter v.1.2
GeneRIF:12133571
GeneRIF:11836615
Astrocytic Neoplasm[accessedResource: NCIt:C6958][accessDate: 2009-11-30]
GeneRIF:15902504
NCIt:C6958
GeneRIF:12077339
GeneRIF:11958417
GeneRIF:12393263
GeneRIF:12829373
James Malone
Goto-Kakizaki
http://www.taconic.com/wmspage.cfm?parm1=757
Goto-Kakizaki is a rat strain as described in http://www.taconic.com/wmspage.cfm?parm1=757
CL:0000187
NIFSTD:sao519252327
Tomasz Adamusiak
James Malone
muscle cell
BioportalImporter v.1.2
myocyte[accessedResource: CL:0000187][accessDate: 2009-11-30]
A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle.[accessedResource: CL:0000187][accessDate: 2009-11-30]
PATO:0001341
MO_659
James Malone
BioportalImporter v.1.2
mating type a
A S. cerevisiae mating type cells that secrete a pheromone that in alpha haploids stimulates processes that lead to mating.[accessedResource: PATO:0001341][accessDate: 2009-11-30]
James Malone
Pan paniscus
pygmy chimpanzee
Bonobo
NCITaxon:9597
James Malone
BioportalImporter v.1.2
A centrally-located portion of the brain affected by Huntington's Disease. The putamen is structurally similar to the caudate nucleus together with which it composes what is termed the striatum.[accessedResource: BTO:0000212][accessDate: 2009-11-30]
BTO:0000212
caudate putamen
James Malone
BioportalImporter v.1.2
An electric current unit is a base unit which is a standard measure of the flow of electric charge.
A base unit which is a standard measure of the flow of electric charge.[accessedResource: UO:0000004][accessDate: 2009-11-30]
UO:0000004
electric current unit
KSHV[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
human herpesvirus 8
Kaposi Sarcoma-Associated Herpes Virus[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
HHV8[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
Ele Holloway
Virus-HHV8[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
Kaposi Sarcoma Herpes Virus[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
BioportalImporter v.1.2
Tomasz Adamusiak
A gammaherpesvirus that contributes to the development of Kaposi sarcoma.[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
HHV-8[accessedResource: NCIt:C14327][accessDate: 2009-11-30]
NCIt:C14327
GeneRIF:14741210
GeneRIF:12654965
GeneRIF:12091319
GeneRIF:12798793
BioportalImporter v.1.2
A heterogeneous group of inherited MYOPATHIES, characterized by wasting and weakness of the SKELETAL MUSCLE. They are categorized by the sites of MUSCLE WEAKNESS; AGE OF ONSET; and INHERITANCE PATTERNS.[accessedResource: MSH:D009136][accessDate: 2009-11-30]
Hereditary progressive muscular dystrophy[accessedResource: DOID:9884][accessDate: 2009-11-30]
GeneRIF:16115818
MSH:D009136
GeneRIF:12011280
GeneRIF:12609503
GeneRIF:12145747
Hereditary progressive muscular dystrophy (disorder)[accessedResource: DOID:9884][accessDate: 2009-11-30]
Hereditary progressive muscular dystrophy NOS (disorder)[accessedResource: DOID:9884][accessDate: 2009-11-30]
Muscular dystrophy NOS[accessedResource: DOID:9884][accessDate: 2009-11-30]
GeneRIF:12657835
GeneRIF:15221789
GeneRIF:15371336
ICD9:359.1
GeneRIF:16286249
GeneRIF:16130093
Muscular dystrophy (disorder)[accessedResource: DOID:9884][accessDate: 2009-11-30]
GeneRIF:12189167
GeneRIF:12783988
GeneRIF:16098969
GeneRIF:15833432
GeneRIF:15848172
GeneRIF:14652796
James Malone
Hereditary progressive muscular dystrophy, NOS[accessedResource: DOID:9884][accessDate: 2009-11-30]
SNOMEDCT:193236007
GeneRIF:12387816
GeneRIF:12736685
muscular dystrophy
GeneRIF:11792810
DOID:9884
GeneRIF:15668457
GeneRIF:12196663
GeneRIF:12192640
GeneRIF:12057917
SNOMEDCT:193225000
GeneRIF:14985349
SNOMEDCT:73297009
GeneRIF:14512171
GeneRIF:16084089
GeneRIF:15365169
GeneRIF:11829483
Muscular Dystrophies[accessedResource: DOID:9884][accessDate: 2009-11-30]
GeneRIF:12609502
leaf of a moss or liverwort[accessedResource: MAT:0000276][accessDate: 2009-11-30]
phyllid
James Malone
BioportalImporter v.1.2
MAT:0000276
BTO:0000258
choroid plexus
BioportalImporter v.1.2
James Malone
The choroid plexus is tissue located in the spaces inside the brain called ventricles. The choroid plexus makes the fluid that fills the ventricles and surrounds the brain and spinal cord.[accessedResource: BTO:0000258][accessDate: 2009-11-30]
The choroid plexus is a brain structure located in the spaces inside the brain called ventricles. The choroid plexus makes the fluid that fills the ventricles and surrounds the brain and spinal cord.
intestinal endoderm
Tomasz Adamusiak
Jie Zheng
James Malone
NCIt:C32078
BTO:0002354
BioportalImporter v.1.2
Ankle Joint[accessedResource: NCIt:C32078][accessDate: 2009-11-30]
ankle
A gliding joint between the distal ends of the tibia and fibula and the proximal end of the talus.
[Source: NCI Thesaurus C32078]
The highest of the tarsal bones and the one that articulates with the tibia and fibula to form the ankle joint.[accessedResource: BTO:0002354][accessDate: 2009-11-30]
SNU475
James Malone
Ele Holloway
NCIt:C12232
James Malone
BioportalImporter v.1.2
Uvula of palate[accessedResource: FMA:55022][accessDate: 2009-11-30]
uvula
FMA:55022
A set of symptoms or conditions that occur together and suggest the presence of a certain disease or an increased chance of developing the disease.
syndrome
James Malone
NCI Metathesaurus http://ncimeta.nci.nih.gov/MetaServlet/ResultServlet?cui=C0039082 Date accessed: 30th October 2007
division of carotid artery
James Malone
BioportalImporter v.1.2
Subdivision of common carotid artery[accessedResource: FMA:70504][accessDate: 2009-11-30]
Common carotid arterial subdivision[accessedResource: FMA:70504][accessDate: 2009-11-30]
FMA:70504
James Malone
CS57835 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158859&type=germplasm
CS57835
http://www.arabidopsis.org/servlets/TairObject?id=1005158859&type=germplasm
stage II endometrioid carcinoma
James Malone
UO:0000176
James Malone
BioportalImporter v.1.2
milligram per milliliter
mg/ml[accessedResource: UO:0000176][accessDate: 2009-11-30]
A milligram per milliliter is a density unit which is equal to mass of an object in milligrams divided by the volume in milliliters.
A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.[accessedResource: UO:0000176][accessDate: 2009-11-30]
Fisher344 is a rat strain as described in http://www.ratmap.org/ShowStrainDetails.html?strain=72
F344
James Malone
Fischer 344
http://www.ratmap.org/ShowStrainDetails.html?strain=72
TAO:0000029
James Malone
SAEL:50
ZFA:0000029
FMAID:67687
MA:0000195
MAT:0000107
XAO:0000015
rhombencephalon[accessedResource: MAT:0000107][accessDate: 2009-11-30]
Tomasz Adamusiak
EMAPA:16916
EHDAA:3514
Organ component of neuraxis that has as its parts the pons, cerebellum and medulla oblongata . Examples: There is only one hindbrain.[accessedResource: FMAID:67687][accessDate: 2009-11-30]
MFO:0002340
NIFSTD:birnlex_942
hindbrain
BTO:0000672
The posterior of the three primary divisions of the developing vertebrate brain or the corresponding part of the adult brain that includes the cerebellum, the medulla oblongata, and in mammals the pons and that controls autonomic functions and equilibrium.[accessedResource: BTO:0000672][accessDate: 2009-11-30]
BioportalImporter v.1.2
lymph vessel
TAO:0005105
Segment of lymphatic tree organ, the wall and lumen of which are continuous with those of the veins, directly or indirectly; together with other lymphatic vessels and lymph nodes, it constitutes the lymphatic tree organ. Examples: bronchomediastinal lymph duct, thoracic duct.[accessedResource: FMAID:30315][accessDate: 2009-11-30]
MAT:0000443
BTO:0000752
lymphatic vessel[accessedResource: MAT:0000443][accessDate: 2009-11-30]
A vessel that contains or conveys lymph, that originates as an interfibrillar or intercellular cleft or space in a tissue or organ, and that if small has no distinct walls or walls composed only of endothelial cells and if large resembles a vein in structure.[accessedResource: BTO:0000752][accessDate: 2009-11-30]
MA:0000138
James Malone
XAO:0000375
BioportalImporter v.1.2
FMAID:30315
RGD:1581618
Okamoto-Aoki
James Malone
James Malone
Caco-2
James Malone
Pan troglodytes
Common Chimpanzee
NCITaxon:9598
James Malone
larval day 7-13
ZFS:0000039
ZFS:0000011
James Malone
blastula 1k-cell
GeneRIF:15695771
GeneRIF:12920078
DOID:13294
SNOMEDCT:268815007
GeneRIF:12376298
GeneRIF:15712600
ICD9:764.90
ICD9:764.96
ICD9:764.92
GeneRIF:14692644
ICD9:764.93
ICD9:764.91
ICD9:764.97
GeneRIF:15166008
GeneRIF:12576245
GeneRIF:11903419
GeneRIF:15371566
GeneRIF:12832488
GeneRIF:12788896
James Malone
ICD9:764.98
ICD9:764.94
GeneRIF:12072378
GeneRIF:14688210
GeneRIF:12362237
SNOMEDCT:22033007
ICD9:764.99
ICD9:764.95
fetal growth restriction
BioportalImporter v.1.2
GeneRIF:11809917
GeneRIF:12433638
GeneRIF:11738801
GeneRIF:15625086
GeneRIF:11738800
ICD9:764.9
GeneRIF:11924936
ZFS:0000041
James Malone
larval day 21-29
PO:0004542
BTO:0001181
James Malone
BioportalImporter v.1.2
rhizome
A somewhat elongate usually horizontal subterranean plant stem that is often thickened by deposits of reserve food material, produces shoots above and roots below, and is distinguished from a true root in possessing buds, nodes, and usually scalelike leaves.[accessedResource: BTO:0001181][accessDate: 2009-11-30]
MAT:0000219
GeneRIF:12736724
GeneRIF:15140234
GeneRIF:15827341
Malignant melanoma (disorder)[accessedResource: DOID:1909][accessDate: 2009-11-30]
GeneRIF:12239452
GeneRIF:15572761
GeneRIF:15150307
GeneRIF:11962515
GeneRIF:12459645
GeneRIF:15833878
GeneRIF:15547691
GeneRIF:15208686
GeneRIF:14991539
GeneRIF:12243754
GeneRIF:15073111
GeneRIF:14719109
GeneRIF:14713106
GeneRIF:15161053
GeneRIF:15146471
GeneRIF:12482591
GeneRIF:12189238
GeneRIF:12230496
GeneRIF:12704387
GeneRIF:15592448
GeneRIF:14666660
GeneRIF:15024080
GeneRIF:11992541
GeneRIF:15716025
GeneRIF:11992548
GeneRIF:15466193
GeneRIF:12939282
GeneRIF:15210734
GeneRIF:15998788
GeneRIF:11809675
GeneRIF:12183361
GeneRIF:15848191
GeneRIF:15184373
GeneRIF:15856458
GeneRIF:12789289
GeneRIF:12759390
GeneRIF:14695152
GeneRIF:14727087
GeneRIF:15724013
GeneRIF:11828258
GeneRIF:12072543
GeneRIF:12014625
GeneRIF:12665595
GeneRIF:15607961
GeneRIF:14646619
GeneRIF:12198771
GeneRIF:15855653
GeneRIF:15753377
Malignant melanoma NOS (morphologic abnormality)[accessedResource: DOID:1909][accessDate: 2009-11-30]
GeneRIF:12894561
GeneRIF:11801603
GeneRIF:12140376
GeneRIF:14732231
GeneRIF:16272362
GeneRIF:11830592
GeneRIF:15856464
GeneRIF:15897876
GeneRIF:15809735
GeneRIF:15093732
GeneRIF:12702150
GeneRIF:12777976
GeneRIF:12170182
GeneRIF:16129781
GeneRIF:15277467
SNOMEDCT:372244006
GeneRIF:15362372
GeneRIF:12619120
GeneRIF:12028585
GeneRIF:15856016
GeneRIF:15386421
GeneRIF:12208877
GeneRIF:15313890
GeneRIF:15782137
GeneRIF:15608673
GeneRIF:15009102
GeneRIF:12783933
GeneRIF:16189525
GeneRIF:16021575
GeneRIF:12516095
GeneRIF:14581607
GeneRIF:14618632
GeneRIF:14583455
GeneRIF:12682852
A malignant neoplasm derived from cells that are capable of forming melanin, which may occur in the skin of any part of the body, in the eye, or, rarely, in the mucous membranes of the genitalia, anus, oral cavity, or other sites. It occurs mostly in adults and may originate de novo or from a pigmented nevus or malignant lentigo. Melanomas frequently metastasize widely, and the regional lymph nodes, liver, lungs, and brain are likely to be involved. The incidence of malignant skin melanomas is rising rapidly in all parts of the world. (Stedman, 25th ed; from Rook et al., Textbook of Dermatology, 4th ed, p2445)[accessedResource: MSH:D008545][accessDate: 2009-11-30]
GeneRIF:15694309
GeneRIF:14961576
GeneRIF:11828253
A malignant, usually aggressive tumor composed of atypical, neoplastic melanocytes. Most often, melanomas arise in the skin (cutaneous melanomas) and include the following histologic subtypes: superficial spreading melanoma, nodular melanoma, acral lentiginous melanoma, and lentigo maligna melanoma. Cutaneous melanomas may arise from acquired or congenital melanocytic or dysplastic nevi. Melanomas may also arise in other anatomic sites including the gastrointestinal system, eye, urinary tract, and reproductive system. Melanomas frequently metastasize to lymph nodes, liver, lungs, and brain.[accessedResource: NCIt:C3224][accessDate: 2009-11-30]
GeneRIF:15998953
GeneRIF:14555513
GeneRIF:12655789
GeneRIF:12883362
GeneRIF:16040804
GeneRIF:12376466
GeneRIF:12067988
GeneRIF:12218055
GeneRIF:12230495
GeneRIF:12439754
GeneRIF:14508519
GeneRIF:15492811
GeneRIF:12168790
GeneRIF:12538712
GeneRIF:15714116
GeneRIF:12068308
GeneRIF:12821780
GeneRIF:12060397
GeneRIF:12631591
GeneRIF:12750156
GeneRIF:11844832
GeneRIF:16232302
GeneRIF:15140228
GeneRIF:15014019
GeneRIF:12021307
GeneRIF:11807902
GeneRIF:11822878
GeneRIF:12018852
GeneRIF:15107545
GeneRIF:15161700
GeneRIF:16354196
GeneRIF:14500642
GeneRIF:15009703
GeneRIF:11828257
GeneRIF:15187113
GeneRIF:16081848
GeneRIF:12606943
GeneRIF:15814740
GeneRIF:15832175
GeneRIF:12777979
GeneRIF:15373782
GeneRIF:12696065
GeneRIF:12124804
GeneRIF:12618768
GeneRIF:15743794
GeneRIF:14559981
GeneRIF:10449755
GeneRIF:12017286
MSH:D008545
Naevocarcinoma[accessedResource: DOID:1909][accessDate: 2009-11-30]
GeneRIF:16103065
GeneRIF:15491322
GeneRIF:12706526
GeneRIF:11500805
GeneRIF:12454511
GeneRIF:16277028
GeneRIF:12823444
GeneRIF:11891198
SNOMEDCT:2092003
GeneRIF:16140982
GeneRIF:15383569
GeneRIF:12058259
GeneRIF:15834638
GeneRIF:12710945
GeneRIF:15149859
GeneRIF:15993843
GeneRIF:15001714
GeneRIF:15305155
GeneRIF:12161512
GeneRIF:15009726
GeneRIF:12459643
GeneRIF:12082534
GeneRIF:14675203
GeneRIF:16211213
GeneRIF:15714119
GeneRIF:12972299
GeneRIF:12490317
GeneRIF:14729600
GeneRIF:12080186
GeneRIF:12533668
GeneRIF:11930117
GeneRIF:12096926
GeneRIF:12459646
GeneRIF:15024700
GeneRIF:15064726
GeneRIF:15026369
GeneRIF:15265913
GeneRIF:12445207
GeneRIF:15645118
GeneRIF:14630948
GeneRIF:15851010
GeneRIF:15328193
GeneRIF:15305164
GeneRIF:12074634
GeneRIF:14522897
GeneRIF:16098042
GeneRIF:12485936
GeneRIF:12209993
melanoma
NCIt:C3224
GeneRIF:12362978
GeneRIF:12140380
GeneRIF:15009721
GeneRIF:15557124
GeneRIF:15843590
GeneRIF:15564140
GeneRIF:15721302
GeneRIF:12920221
GeneRIF:15832174
GeneRIF:15373802
GeneRIF:14506702
GeneRIF:12235125
GeneRIF:16007121
GeneRIF:11936276
GeneRIF:12230498
GeneRIF:15955107
GeneRIF:12095976
GeneRIF:16098052
GeneRIF:15373781
GeneRIF:12875987
GeneRIF:15551350
GeneRIF:12670917
GeneRIF:15373779
GeneRIF:15843517
GeneRIF:12036934
GeneRIF:15305193
GeneRIF:15210957
GeneRIF:15191558
GeneRIF:14612926
GeneRIF:12716902
GeneRIF:12883368
GeneRIF:11918086
GeneRIF:12883358
GeneRIF:15201995
GeneRIF:12687014
GeneRIF:12384558
GeneRIF:12950144
GeneRIF:11962738
GeneRIF:12072536
GeneRIF:15610525
GeneRIF:11992404
GeneRIF:14726258
GeneRIF:15832775
GeneRIF:15179189
GeneRIF:15880589
GeneRIF:12664607
GeneRIF:15201991
GeneRIF:15257316
GeneRIF:15781639
GeneRIF:12140383
GeneRIF:12855667
GeneRIF:12810628
Malignant Melanoma[accessedResource: NCIt:C3224][accessDate: 2009-11-30]
GeneRIF:15816840
GeneRIF:12140378
GeneRIF:15610528
GeneRIF:11839575
GeneRIF:12927791
GeneRIF:15688405
GeneRIF:16008690
GeneRIF:15366927
GeneRIF:12850810
GeneRIF:15009731
GeneRIF:11884449
GeneRIF:15987741
GeneRIF:12208865
GeneRIF:15577328
GeneRIF:15869411
GeneRIF:12848854
James Malone
GeneRIF:14757863
GeneRIF:12670907
GeneRIF:14634801
GeneRIF:12438452
GeneRIF:15014028
BioportalImporter v.1.2
GeneRIF:15273735
GeneRIF:12839565
GeneRIF:15817166
GeneRIF:15469480
GeneRIF:15657897
GeneRIF:14735200
DOID:1909
GeneRIF:14585195
Malignant melanoma, morphology (morphologic abnormality)[accessedResource: DOID:1909][accessDate: 2009-11-30]
GeneRIF:15999103
GeneRIF:12530093
GeneRIF:11812790
GeneRIF:11996105
GeneRIF:14602237
GeneRIF:12107107
GeneRIF:12296515
GeneRIF:12170178
GeneRIF:15760339
GeneRIF:15955106
GeneRIF:12920225
GeneRIF:12777984
GeneRIF:15166498
SNOMEDCT:269503007
GeneRIF:14676121
GeneRIF:15907783
GeneRIF:12747754
GeneRIF:15649154
GeneRIF:15509546
GeneRIF:15024079
GeneRIF:15618925
GeneRIF:14704859
GeneRIF:15009113
GeneRIF:14962105
GeneRIF:15577313
GeneRIF:12086670
GeneRIF:12650606
GeneRIF:12949795
GeneRIF:15557758
GeneRIF:16033529
GeneRIF:12793438
GeneRIF:12405287
GeneRIF:15880581
GeneRIF:15743795
GeneRIF:12366697
GeneRIF:14999777
GeneRIF:15179190
GeneRIF:15610524
GeneRIF:15133491
GeneRIF:15305153
GeneRIF:12729801
GeneRIF:14632199
GeneRIF:15634901
GeneRIF:11500806
GeneRIF:11959101
GeneRIF:12950721
GeneRIF:15979576
GeneRIF:15983061
GeneRIF:12958194
GeneRIF:12538723
GeneRIF:15897908
GeneRIF:16234564
GeneRIF:15330192
GeneRIF:12824159
GeneRIF:14696968
GeneRIF:12684636
GeneRIF:15009718
GeneRIF:15991050
GeneRIF:15221796
GeneRIF:12170183
GeneRIF:11781826
GeneRIF:12650602
GeneRIF:15299072
GeneRIF:12115481
GeneRIF:12579526
GeneRIF:14744083
GeneRIF:15475451
GeneRIF:15492257
GeneRIF:15009714
BioportalImporter v.1.2
DOID:5683
hereditary breast and ovarian cancer
Ele Holloway
BRCA1[accessedResource: DOID:5683][accessDate: 2009-11-30]
Tomasz Adamusiak
BRCA2[accessedResource: DOID:5683][accessDate: 2009-11-30]
Familiar Breast and Ovarian Cancer syndrome[accessedResource: DOID:5683][accessDate: 2009-11-30]
hereditary breast ovarian cancer[accessedResource: DOID:5683][accessDate: 2009-11-30]
BioportalImporter v.1.2
Jie Zheng
MO_48
temperature unit
A base unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.[accessedResource: UO:0000005][accessDate: 2009-11-30]
Tomasz Adamusiak
A temperature unit is a base unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
James Malone
UO:0000005
BTO:0001442
brain ventricle
James Malone
BioportalImporter v.1.2
Any of the system of communicating cavities in the brain that are continuous with the central canal of the spinal cord.[accessedResource: BTO:0001442][accessDate: 2009-11-30]
A brain ventricle is a brain structure consisting of communicating cavities in the brain that are continuous with the central canal of the spinal cord.
ICD9:366.46
GeneRIF:11864421
GeneRIF:12485166
GeneRIF:15277496
GeneRIF:15570218
ICD9:366.44
GeneRIF:12944971
GeneRIF:12089525
GeneRIF:15016766
NCIt:C26713
SNOMEDCT:193622008
ICD9:366
SNOMEDCT:193623003
SNOMEDCT:193570009
GeneRIF:15041957
GeneRIF:11955914
SNOMEDCT:128306009
GeneRIF:12620964
GeneRIF:15623749
GeneRIF:16179416
BioportalImporter v.1.2
SNOMEDCT:193608008
James Malone
GeneRIF:12079281
GeneRIF:12475213
DOID:83
GeneRIF:15286169
cataract
GeneRIF:12360425
GeneRIF:15249368
GeneRIF:12426373
GeneRIF:9813099
SNOMEDCT:193620000
GeneRIF:15452067
Partial or complete opacity of the crystalline lens of one or both eyes that decreases visual acuity and eventually results in blindness. Some cataracts appear in infancy or in childhood, but most develop in older individuals. (Sternberg Diagnostic Surgical Pathology, 3rd ed.)[accessedResource: NCIt:C26713][accessDate: 2009-11-30]
GeneRIF:15004872
SNOMEDCT:247053007
GeneRIF:15347804
GeneRIF:15322286
ICD9:366.8
ICD9:366.9
GeneRIF:15101113
GeneRIF:15064679
GeneRIF:16310481
GeneRIF:15342707
GeneRIF:12942049
ICD9:366.4
GeneRIF:11904300
GeneRIF:12724621
GeneRIF:15208569
GeneRIF:15709761
GeneRIF:12356818
liver endoderm
Tomasz Adamusiak
Jie Zheng
A heart component is an animal component that is part of some heart.
heart component
James Malone
submandibular gland
Submaxillary Gland[accessedResource: NCIt:C12233][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0001316
One of the three chief, paired salivary glands, predominantly serous, lying partly above and partly below the posterior half of the base of the mandible.[accessedResource: BTO:0001316][accessDate: 2009-11-30]
One of two salivary glands in the neck, located in the space bound by the two bellies of the digastric muscle and the angle of the mandible. It discharges through the submandibular duct. (MeSH)
[Source: NCI Thesaurus C12233]
James Malone
NCIt:C12233
James Malone
FBbt:00005831
dorsal imaginal precursor
James Malone
Ele Holloway
SNU5
James Malone
BioportalImporter v.1.2
Any substance which when absorbed into a living organism may modify one or more of its functions. The term is generally accepted for a substance taken for a therapeutic purpose, but is also commonly used for abused substances.[accessedResource: CHEBI:23888][accessDate: 2009-11-30]
drug role
CHEBI:23888
CS57836 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158860&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158860&type=germplasm
James Malone
CS57836
GeneRIF:12839562
GeneRIF:15833746
GeneRIF:15855645
GeneRIF:12858451
GeneRIF:12618866
GeneRIF:16109415
GeneRIF:16098034
GeneRIF:12847692
MSH:D012595
SNOMEDCT:89155008
PSS (progressive systemic sclerosis)[accessedResource: DOID:418][accessDate: 2009-11-30]
GeneRIF:12757775
GeneRIF:15797863
GeneRIF:15654958
GeneRIF:15247510
GeneRIF:12888869
BioportalImporter v.1.2
GeneRIF:14764526
GeneRIF:12777465
systemic scleroderma
GeneRIF:14662895
GeneRIF:15471851
GeneRIF:16025105
GeneRIF:15500643
GeneRIF:15722417
GeneRIF:12609057
GeneRIF:15468358
GeneRIF:12692352
GeneRIF:12528118
GeneRIF:15068249
GeneRIF:15345711
GeneRIF:12493731
GeneRIF:16081813
GeneRIF:14872500
GeneRIF:15110723
GeneRIF:16112028
ICD9:710.1
GeneRIF:16081426
GeneRIF:14729510
GeneRIF:11904440
Scleroderma (& [systemic sclerosis])[accessedResource: DOID:418][accessDate: 2009-11-30]
GeneRIF:12233882
GeneRIF:12847691
James Malone
GeneRIF:12508774
GeneRIF:15641797
GeneRIF:14730633
GeneRIF:15593213
GeneRIF:14722617
Scleroderma syndrome[accessedResource: DOID:418][accessDate: 2009-11-30]
GeneRIF:15215176
GeneRIF:14730619
GeneRIF:12843267
GeneRIF:15149850
GeneRIF:12015245
GeneRIF:11796184
GeneRIF:15818662
GeneRIF:14705224
GeneRIF:16049784
GeneRIF:12388554
GeneRIF:12925209
GeneRIF:12374741
DOID:418
GeneRIF:15622541
Progressive systemic sclerosis[accessedResource: DOID:418][accessDate: 2009-11-30]
GeneRIF:12009077
Systemic sclerosis[accessedResource: DOID:418][accessDate: 2009-11-30]
GeneRIF:12007723
GeneRIF:15896720
GeneRIF:15146426
A chronic multi-system disorder of CONNECTIVE TISSUE. It is characterized by SCLEROSIS in the SKIN, the LUNGS, the HEART, the GASTROINTESTINAL TRACT, the KIDNEYS, and the MUSCULOSKELETAL SYSTEM. Other important features include diseased small BLOOD VESSELS and AUTOANTIBODIES. The disorder is named for its most prominent feature (hard skin), and classified into subsets by the extent of skin thickening: LIMITED SCLERODERMA and DIFFUSE SCLERODERMA.[accessedResource: MSH:D012595][accessDate: 2009-11-30]
GeneRIF:12629514
GeneRIF:12784398
GeneRIF:14613297
GeneRIF:12091308
Scleroderma[accessedResource: DOID:418][accessDate: 2009-11-30]
GeneRIF:12913118
GeneRIF:12528119
GeneRIF:14705223
GeneRIF:14613485
GeneRIF:15146427
systemic lupus erythematosus
EV:0400043
systemic lupus erythematosus
CL:0000617
GABAergic neuron
James Malone
The substantia nigra is located in the mesencephalon (mid brain) region of the brain. It is part of the basal ganglia.[accessedResource: BTO:0000143][accessDate: 2009-11-30]
MAT:0000504
BTO:0000143
FMAID:67947
James Malone
Soemmering's substance[accessedResource: FMAID:67947][accessDate: 2009-11-30]
substantia nigra
EV:0100247
MA:0000210
BioportalImporter v.1.2
Nucleus of basis pedunculi[accessedResource: FMAID:67947][accessDate: 2009-11-30]
Subdivision of the midbrain anterior to the midbrain tegmentum which contains darkly pigmented neurons.[accessedResource: FMAID:67947][accessDate: 2009-11-30]
CHEBI:50159
canrenoate
BioportalImporter v.1.2
17beta-hydroxy-3-oxo-21a-homopregna-4,6-dien-21a-oate[accessedResource: CHEBI:50159][accessDate: 2009-11-30]
A steroid acid anion that has formula C22H29O4.[accessedResource: CHEBI:50159][accessDate: 2009-11-30]
stage I endometrioid carcinoma
James Malone
Dahl salt-resistant
RGD:1582184
James Malone
FBbt:00004511
TGMA:0000007
BTO:0000074
Paired, segmented, jointed, sensory appendage attached to the anterior of the head capsule, between the eyes.[accessedResource: FBbt:00004511][accessDate: 2009-11-30]
BioportalImporter v.1.2
antenna
MAT:0000086
One of the paired anterior appendicular organs of the insect head.[accessedResource: TGMA:0000007][accessDate: 2009-11-30]
James Malone
One of a pair of slender movable segmented sensory organs on the head of insects, myriapods, and crustaceans.[accessedResource: BTO:0000074][accessDate: 2009-11-30]
Olive Baboon
James Malone
NCITaxon:9555
Papio anubis
GeneRIF:15100674
BioportalImporter v.1.2
GeneRIF:15356575
GeneRIF:16123393
GeneRIF:15066132
GeneRIF:16210640
GeneRIF:12642833
GeneRIF:16027362
GeneRIF:15976383
GeneRIF:15723126
GeneRIF:11940068
GeneRIF:11801688
GeneRIF:15528385
GeneRIF:15087305
James Malone
GeneRIF:15604153
GeneRIF:15115168
GeneRIF:12915772
DOID:2841
GeneRIF:15722346
GeneRIF:15677460
GeneRIF:14764726
GeneRIF:12847279
GeneRIF:14734765
GeneRIF:12751728
GeneRIF:12373000
GeneRIF:11709756
GeneRIF:11466391
GeneRIF:15223611
SNOMEDCT:195967001
GeneRIF:15944327
GeneRIF:15696081
GeneRIF:11786643
GeneRIF:12575459
GeneRIF:12672051
GeneRIF:15585884
A chronic respiratory disease manifested as difficulty breathing due to the narrowing of bronchial passageways.[accessedResource: NCIt:C28397][accessDate: 2009-11-30]
GeneRIF:11692107
GeneRIF:15531759
GeneRIF:15020290
GeneRIF:14520724
GeneRIF:12225952
GeneRIF:11907117
GeneRIF:12847242
GeneRIF:16168397
GeneRIF:12110844
GeneRIF:15059480
GeneRIF:14610476
GeneRIF:14657864
GeneRIF:12530117
GeneRIF:14657873
GeneRIF:16148052
GeneRIF:15153795
GeneRIF:16304252
GeneRIF:11839568
GeneRIF:12620968
GeneRIF:15612961
GeneRIF:12897738
SNOMEDCT:195979001
GeneRIF:15007350
GeneRIF:12063528
GeneRIF:12938094
GeneRIF:12406828
GeneRIF:12165540
GeneRIF:12876407
GeneRIF:15059478
GeneRIF:11744622
GeneRIF:11898000
GeneRIF:15179560
GeneRIF:14734780
GeneRIF:15764725
GeneRIF:14692664
asthma
GeneRIF:12047364
GeneRIF:12091879
GeneRIF:15879427
GeneRIF:16143586
GeneRIF:16115819
GeneRIF:12915771
GeneRIF:12209087
GeneRIF:16215326
GeneRIF:16026590
GeneRIF:16081847
GeneRIF:15207712
GeneRIF:12682233
SNOMEDCT:196015005
GeneRIF:12813022
SNOMEDCT:196013003
GeneRIF:12077275
GeneRIF:15947423
GeneRIF:11956218
GeneRIF:15318163
GeneRIF:16043121
NCIt:C28397
GeneRIF:16081038
GeneRIF:12900517
GeneRIF:15356558
GeneRIF:14633511
GeneRIF:12530118
GeneRIF:15454733
GeneRIF:16034130
GeneRIF:12524255
GeneRIF:11813133
ICD9:493.92
GeneRIF:11897983
GeneRIF:15007351
GeneRIF:11710537
GeneRIF:15003938
GeneRIF:11842300
GeneRIF:11972612
GeneRIF:11972486
GeneRIF:12370400
GeneRIF:16236836
GeneRIF:12145647
GeneRIF:12774669
GeneRIF:12083965
GeneRIF:15709049
GeneRIF:12671058
GeneRIF:14564349
GeneRIF:15557163
GeneRIF:14564352
GeneRIF:11994485
GeneRIF:15051937
GeneRIF:15007353
GeneRIF:16036415
GeneRIF:15496624
GeneRIF:12861851
GeneRIF:15300848
GeneRIF:12237016
GeneRIF:12482203
ICD9:493.90
GeneRIF:15744536
GeneRIF:14707054
GeneRIF:15548573
GeneRIF:12325261
GeneRIF:11896460
GeneRIF:15282200
GeneRIF:16098057
GeneRIF:15345705
GeneRIF:14597484
GeneRIF:15696078
GeneRIF:15602630
GeneRIF:12204890
GeneRIF:15059493
GeneRIF:11668616
GeneRIF:15356557
GeneRIF:15743779
GeneRIF:15192232
GeneRIF:11907124
GeneRIF:15961692
GeneRIF:12234263
GeneRIF:16236890
GeneRIF:12530121
GeneRIF:12897754
GeneRIF:16150927
GeneRIF:16024972
GeneRIF:12376349
GeneRIF:14761934
GeneRIF:15817799
GeneRIF:11725301
GeneRIF:15579447
GeneRIF:12204872
GeneRIF:16000330
GeneRIF:12646606
GeneRIF:11912176
GeneRIF:12794006
ICD9:493
GeneRIF:12063521
GeneRIF:11842292
GeneRIF:15853952
GeneRIF:11953202
SNOMEDCT:266365004
GeneRIF:12789231
GeneRIF:12396623
GeneRIF:15282199
ICD9:493.8
GeneRIF:15201134
GeneRIF:14718253
GeneRIF:12045241
GeneRIF:15105161
GeneRIF:14682393
GeneRIF:12091169
GeneRIF:15039137
GeneRIF:15941840
GeneRIF:15478389
GeneRIF:11466392
ICD9:504
GeneRIF:15988535
GeneRIF:15634264
GeneRIF:12594058
GeneRIF:12754192
ICD9:493.9
GeneRIF:16021473
GeneRIF:15073379
GeneRIF:12754510
GeneRIF:12170265
GeneRIF:15148962
GeneRIF:14754534
GeneRIF:15467329
GeneRIF:12626595
GeneRIF:11692112
GeneRIF:15131571
GeneRIF:15710598
GeneRIF:12568496
GeneRIF:12730147
A connective-tissue cell of mesenchymal origin that secretes proteins and especially molecular collagen from which the extracellular fibrillar matrix of connective tissue forms.[accessedResource: BTO:0000452][accessDate: 2009-11-30]
NIFSTD:nlx_cell_20090201
fibroblast
A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.[accessedResource: CL:0000057][accessDate: 2009-11-30]
BioportalImporter v.1.2
CL:0000057
primary dermal fibroblast
James Malone
mouse embryonic fibroblast
BTO:0000452
Tomasz Adamusiak
James Malone
ZFS:0000008
blastula 128-cell
CORL279
James Malone
Ele Holloway
Juvenile rheumatoid arthritis NOS (disorder)[accessedResource: DOID:677][accessDate: 2009-11-30]
Ele Holloway
juvenile arthritis[accessedResource: DOID:677][accessDate: 2009-11-30]
DOID:677
Juvenile rheumatoid arthritis (disorder)[accessedResource: DOID:677][accessDate: 2009-11-30]
Juvenile seropositive polyarthritis[accessedResource: DOID:677][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
Juvenile chronic arthritis (disorder)[accessedResource: DOID:677][accessDate: 2009-11-30]
Juvenile rheumatoid a.[accessedResource: DOID:677][accessDate: 2009-11-30]
Juvenile idiopathic arthritis (disorder)[accessedResource: DOID:677][accessDate: 2009-11-30]
Juvenile rheumatoid arthritis, NOS[accessedResource: DOID:677][accessDate: 2009-11-30]
chronic childhood arthritis
Juvenile rheumatoid arthritis[accessedResource: DOID:677][accessDate: 2009-11-30]
NCIH1573
James Malone
Ele Holloway
CHEBI:31746
kainic acid
BioportalImporter v.1.2
(3S,4R)-3-(carboxymethyl)-4-(prop-1-en-2-yl)-L-proline[accessedResource: CHEBI:31746][accessDate: 2009-11-30]
A pyrrolidinemonocarboxylic acid that has formula C10H15NO4.[accessedResource: CHEBI:31746][accessDate: 2009-11-30]
James Malone
MO_928
The process of obtaining quantifiable values from the scanned image of the array. Exact synonyms: image analysis, image quantification
feature extraction
Tomasz Adamusiak
Jie Zheng
James Malone
cadmium compounds
CHEBI:22978
Tomasz Adamusiak
James Malone
chronic myeloproliferative disorder
James Malone
dorsal metathoracic disc
FBbt:00001779
James Malone
Ele Holloway
HT1376
Adenocarcinoma of Uterine Cervix[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
Adenocarcinoma of Cervix Uteri[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
An adenocarcinoma arising from the cervical epithelium. It accounts for approximately 15% of invasive cervical carcinomas. Increased numbers of sexual partners and human papilloma virus (HPV) infection are risk factors. Grossly, advanced cervical adenocarcinoma may present as an exophytic mass, an ulcerated lesion, or diffuse cervical enlargement. Microscopically, the majority of cervical adenocarcinomas are of the endocervical (mucinous) type.[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
BioportalImporter v.1.2
cervical adenocarcinoma
DOID:3702
Adenocarcinoma of the Cervix Uteri[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
NCIt:C4029
James Malone
Cervix Uteri Adenocarcinoma[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
Adenocarcinoma of Cervix[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
Adenocarcinoma of the Cervix[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
Cervix Adenocarcinoma[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
Adenocarcinoma of the Uterine Cervix[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
Uterine Cervix Adenocarcinoma[accessedResource: NCIt:C4029][accessDate: 2009-11-30]
neurohemal organ
TADS:0000245
BTO:0002106
A system of neurons that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system.[accessedResource: BTO:0002106][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
GM12815
James Malone
similar to CL:0000837, but in fetal liver
Tomasz Adamusiak
Jie Zheng
fetal liver hematopoietic progenitor cell
esophageal endoderm
Tomasz Adamusiak
Jie Zheng
NCIH522
James Malone
Ele Holloway
GeneRIF:14523459
GeneRIF:15213099
GeneRIF:12576428
GeneRIF:11937267
ICD9:205.1
GeneRIF:15790787
GeneRIF:12351404
chronic myeloid leukemia NOS (disorder)[accessedResource: DOID:8552][accessDate: 2009-11-30]
CML[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:12734675
GeneRIF:15716990
BioportalImporter v.1.2
GeneRIF:15676212
MSH:D015464
GeneRIF:15556610
GeneRIF:12821944
chronic myeloid leukaemia[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:12130516
GeneRIF:15481444
Myeloid leukemia, chronic[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:15583852
GeneRIF:12505259
GeneRIF:14656881
Obsolete: Duplication: use EFO_0000339 instead
GeneRIF:12144533
CML - chronic Myelogenous Leukemia[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:15388581
chronic myelogenous leukemia, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:8552][accessDate: 2009-11-30]
Clonal hematopoetic disorder caused by an acquired genetic defect in PLURIPOTENT STEM CELLS. It starts in MYELOID CELLS of the bone marrow, invades the blood and then other organs. The condition progresses from a stable, more indolent, chronic phase (LEUKEMIA, MYELOID, CHRONIC PHASE) lasting up to 7 years, to an advanced phase composed of an accelerated phase (LEUKEMIA, MYELOID, ACCELERATED PHASE) and BLAST CRISIS.[accessedResource: MSH:D015464][accessDate: 2009-11-30]
true
GeneRIF:15735728
chronic myeloid leukemia, disease (disorder)[accessedResource: DOID:8552][accessDate: 2009-11-30]
GeneRIF:11830496
GeneRIF:11861294
GeneRIF:16361542
GeneRIF:15167915
GeneRIF:12393722
James Malone
GeneRIF:12576338
GeneRIF:15621754
GeneRIF:12964051
GeneRIF:15569990
GeneRIF:12408765
DOID:8552
obsolete_chronic myeloid leukemia
GeneRIF:12740446
GeneRIF:15626746
GeneRIF:14586403
James Malone
NIFSTD:birnlex_1263
The rostral extensions of the ventricular system of the brain consisting of two cavities, one on each side of the brain within the central regions of each cerebral hemisphere. Cerebrospinal fluid flows from the lateral ventricles into the centrally third ventricle via the foramen of Monroe.[accessedResource: C12834][accessDate: 2009-11-30]
Lateral Ventricle of Brain[accessedResource: C12834][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0000879
Lateral Ventricles[accessedResource: C12834][accessDate: 2009-11-30]
C12834
lateral ventricle
Tomasz Adamusiak
An internal cavity in each cerebral hemisphere that consists of a central body and three cornua including an anterior one curving forward and outward, a posterior one curving backward, and an inferior one curving downward.[accessedResource: BTO:0000879][accessDate: 2009-11-30]
CL:0000352
BTO:0001086
embryonic stem cell
Totipotent cell cultured from early embryo. Have the advantage that following modification in vitrothey can be used to produce chimeric embryos and thus transgenic animals.[accessedResource: BTO:0001086][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
UO:0000003
MO_166
Jie Zheng
Tomasz Adamusiak
MO_103
James Malone
A time unit is a base unit which is a standard measure of the dimension in which events occur in sequence.
BioportalImporter v.1.2
time unit
A base unit which is a standard measure of the dimension in which events occur in sequence.[accessedResource: UO:0000003][accessDate: 2009-11-30]
An assay is a process with the objective to create as an output information about a material entity (bearing evaluant role).
A planned process with the objective to produce information about some evaluant[accessedResource: OBI_0000070][accessDate: 2009-11-30]
OBI_0000070
James Malone
assay
BioportalImporter v.1.2
A hybridization on a microarray.
In most female insects, an ectodermal pouch derived from the posteroventral part of abdominal segment VIII (possibly IX in some insects) and sometimes adjacent parts of the abdominal venter; ending anteriorly at the posterior end of the common oviduct. In mosquitoes and some other insects, the roof of the vagina is formed by the venter of abdominal segment IX; partially divided transversely by the spermathecal eminence and sometimes the upper vaginal sclerites.[accessedResource: TGMA:0000607][accessDate: 2009-11-30]
MAT:0000128
vagina
MA:0000394
FBbt:00004925
EMAPA:18986
EV:0100117
A canal in a female mammal that leads from the uterus to the external orifice of the genital canal.[accessedResource: BTO:0000243][accessDate: 2009-11-30]
James Malone
FMAID:19949
TADS:0000441
TGMA:0000607
BioportalImporter v.1.2
Organ with organ cavity which connects the cervical canal of uterus to the vestibule of vagina. Examples: There is only one vagina.[accessedResource: FMAID:19949][accessDate: 2009-11-30]
BTO:0000243
James Malone
BioportalImporter v.1.2
Adenoma of the Liver Cells[accessedResource: NCIt:C3758][accessDate: 2009-11-30]
HCA[accessedResource: NCIt:C3758][accessDate: 2009-11-30]
Liver Cell Adenoma[accessedResource: NCIt:C3758][accessDate: 2009-11-30]
A benign epithelial neoplasm arising from the hepatocytes. Grossly, it appears as a soft, round mass which often contains areas of hemorrhage and necrosis. Morphologically, the neoplastic cells resemble normal hepatocytes and form plates separated by sinusoids. Most patients have a history of contraceptive or anabolic steroids use.
[Source: NCI Thesaurus C3758]
Adenoma of Liver Cells[accessedResource: NCIt:C3758][accessDate: 2009-11-30]
NCIt:C3758
hepatocellular adenoma
MA:0000057
BioportalImporter v.1.2
A mammalian heat-producing tissue occurring especially in human newborns and in hibernators.[accessedResource: BTO:0000156][accessDate: 2009-11-30]
James Malone
BTO:0000156
MAT:0000198
NCIt:C22704
Brown Adipose Tissue[accessedResource: NCIt:C22704][accessDate: 2009-11-30]
brown fat
Adipose Tissue - Brown (MMHCC)[accessedResource: NCIt:C22704][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
James Malone
family history
Family history is a form of clinicaly history specifically about relevant aspects of genetic preconditions or family member's clinical history.
MO_59
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
CL:0000837
hemopoietic progenitor cell[accessedResource: CL:0000837][accessDate: 2009-11-30]
A progenitor cell of any hematopoietic lineage, potentially multipotent.[accessedResource: CL:0000837][accessDate: 2009-11-30]
hematopoietic progenitor cell
CORL23
James Malone
Ele Holloway
An oxo monocarboxylic acid that has formula C12H18O3.[accessedResource: CHEBI:18292][accessDate: 2009-11-30]
{(1R,2R)-3-oxo-2-[(2Z)-pent-2-en-1-yl]cyclopentyl}acetic acid[accessedResource: CHEBI:18292][accessDate: 2009-11-30]
BioportalImporter v.1.2
jasmonic acid
CHEBI:18292
camptothecin
BioportalImporter v.1.2
A pyranoindolizinoquinoline that has formula C20H16N2O4.[accessedResource: CHEBI:27656][accessDate: 2009-11-30]
(4S)-4-ethyl-4-hydroxy-1H-pyrano[3',4':6,7]indolizino[1,2-b]quinoline-3,14(4H,12H)-dione[accessedResource: CHEBI:27656][accessDate: 2009-11-30]
James Malone
CHEBI:27656
NCIH1563
James Malone
Ele Holloway
James Malone
Ele Holloway
HT3
FBbt:00005498
dorsal pharyngeal muscle primordium
James Malone
myeloid neoplasm
GM12872
James Malone
ZFA:0000026
A transversely oriented set of cells located deep to the enveloping layer on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland;The fish hatching gland is a unicellular holocrine gland. Although it has recently been found that the precursors or immature forms of the gland cells considerably migrate in the embryonic body during development (see later), the final location of the hatching gland cells in fish is generally restricted to anterior and/or dorsal regions of a well-grown prehatching embryo. In medaka, the final location is somewhat unique: The giant gland cells are mostly localized in the inner surface of the buccal (or pharyngeal) cavity.[accessedResource: BTO:0000558][accessDate: 2009-11-30]
James Malone
TAO:0000026
hatching gland
MAT:0000180
BTO:0000558
BioportalImporter v.1.2
EVM:2000364
A cord arising from the navel that connects the fetus with the placenta; also: yolk stalk[accessedResource: BTO:0001415][accessDate: 2009-11-30]
EV:0100127
FMAID:85541
James Malone
EHDAA:158
MAT:0000280
EV:3000467
BioportalImporter v.1.2
SAEL:113
BTO:0001415
umbilical cord
GeneRIF:16081882
SNOMEDCT:413846005
GeneRIF:14676438
GeneRIF:15718407
GeneRIF:15702235
GeneRIF:12921631
GeneRIF:12137602
GeneRIF:10413721
COLD (chronic obstructive lung disease)[accessedResource: DOID:3083][accessDate: 2009-11-30]
chronic obstructive airways disease NOS (disorder)[accessedResource: DOID:3083][accessDate: 2009-11-30]
GeneRIF:15596681
GeneRIF:11829455
Chronic Obstructive Pulmonary Disease, (COPD)[accessedResource: NCIt:C3199][accessDate: 2009-11-30]
SNOMEDCT:13645005
GeneRIF:12816735
Disease (COPD), Chronic Obstructive[accessedResource: NCIt:C3199][accessDate: 2009-11-30]
COPD[accessedResource: NCIt:C3199][accessDate: 2009-11-30]
GeneRIF:12853070
NCIt:C3199
GeneRIF:15795697
GeneRIF:12884528
James Malone
chronic obstructive pulmonary disease
chronic obstructive airways disease NOS[accessedResource: DOID:3083][accessDate: 2009-11-30]
chronic obstructive airway disease[accessedResource: DOID:3083][accessDate: 2009-11-30]
A disease of chronic diffuse irreversible airflow obstruction. Subcategories of COPD include CHRONIC BRONCHITIS and PULMONARY EMPHYSEMA.[accessedResource: MSH:D029424][accessDate: 2009-11-30]
GeneRIF:14718422
chronic obstructive pulmonary disease finding[accessedResource: DOID:3083][accessDate: 2009-11-30]
MSH:D029424
GeneRIF:12838617
COLD[accessedResource: NCIt:C3199][accessDate: 2009-11-30]
GeneRIF:15039137
GeneRIF:11953106
BioportalImporter v.1.2
GeneRIF:12016104
GeneRIF:15843147
chronic obstructive lung disease [Ambiguous][accessedResource: DOID:3083][accessDate: 2009-11-30]
GeneRIF:15994391
GeneRIF:11667971
GeneRIF:15038404
GeneRIF:14530202
GeneRIF:12761563
COPD NOS[accessedResource: DOID:3083][accessDate: 2009-11-30]
GeneRIF:16236890
Chronic Obstructive Lung Disease[accessedResource: NCIt:C3199][accessDate: 2009-11-30]
GeneRIF:15820782
GeneRIF:15723202
GeneRIF:12838770
GeneRIF:11757623
chronic obstructive lung disease (disorder)[accessedResource: DOID:3083][accessDate: 2009-11-30]
DOID:3083
GeneRIF:14985398
GeneRIF:16126934
Chronic Obstructive Airways Disease[accessedResource: NCIt:C3199][accessDate: 2009-11-30]
GeneRIF:15766560
GeneRIF:16166745
GeneRIF:12172904
GeneRIF:16002569
GeneRIF:14720432
GeneRIF:12861851
SNOMEDCT:196003006
GeneRIF:15175276
James Malone
Ele Holloway
NCIH524
Embryonic endoderm[accessedResource: FMAID:85519][accessDate: 2009-11-30]
definitive endoderm
FMAID:85519
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
embryonic structure
An embryonic specific part is an organism part which is specific to embryos.
An anatomical structure that exists only before the organism is fully formed. In mammals, for example, a structure that exists only prior to the birth of the organism. This structure may be normal or abnormal.[accessedResource: BTO:0000174][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
BTO:0000174
spermathecum
spermatheca[accessedResource: MAT:0000168][accessDate: 2009-11-30]
seminal receptacle[accessedResource: MAT:0000168][accessDate: 2009-11-30]
TGMA:0000560
BioportalImporter v.1.2
TADS:0000434
WBbt:0005319
FBbt:00004921
MAT:0000168
James Malone
In most female insects, the usual sperm storage organ; a posteroventral ectodermal caecum of abdominal segment VIII located just behind the common oviduct; attached to the anterodorsal end of the vagina if the latter is developed; usually single but sometimes up to four are present. In mosquitoes, one, two or three may be present, each consisting of a spermathecal capsule at the end of a spermathecal duct.[accessedResource: TGMA:0000560][accessDate: 2009-11-30]
James Malone
A viral disease is a disease factor that is caused primarily by the infection or otherise hosting of a virus.
viral disease
DNA assay
James Malone
An assay with input DNA
PO:0020121
lateral root
James Malone
BioportalImporter v.1.2
An adipose tissue associated with the amphibiian gonad[accessedResource: MAT:0000456][accessDate: 2009-11-30]
fat body sensu amphibia
Fat_bodies[accessedResource: MAT:0000456][accessDate: 2009-11-30]
MAT:0000456
AAO:0000157
duplicate with EFO_0002059
obsolete_HT1080
James Malone
Ele Holloway
1.8
true
James Malone
Ele Holloway
NCIH1437
linoleic acids
CHEBI:25048
CHEBI:50095
6-N-butanoyl-2'-O-butanoyladenosine 3',5'-(hydrogen phosphate)[accessedResource: CHEBI:50095][accessDate: 2009-11-30]
bucladesine
BioportalImporter v.1.2
TGMA:0000131
The anterior opening of the stomodeum located between the cibarium and pharynx; not to be confused with the secondary mouth (anterior opening of the cibarium) or the tertiary mouth (anterior opening of the food meatus).[accessedResource: TGMA:0000131][accessDate: 2009-11-30]
TAO:0000547
MAT:0000038
James Malone
MA:0000341
BioportalImporter v.1.2
XAO:0003029
ZFA:0000547
XAO:0000126
EMAPA:16262
FBbt:00003126
EV:0100057
AAO:0000053
Oral part of face[accessedResource: FMAID:49184][accessDate: 2009-11-30]
mouth
FMAID:49184
Oral region[accessedResource: FMAID:49184][accessDate: 2009-11-30]
TADS:0000040
The natural opening through which food passes into the body of an animal and which in vertebrates is typically bounded externally by the lips and internally by the pharynx and encloses the tongue, gums, and teeth.[accessedResource: BTO:0001090][accessDate: 2009-11-30]
WBbt:0005255
BTO:0001090
oral cavity[accessedResource: MAT:0000038][accessDate: 2009-11-30]
James Malone
GM12813
familial combined hyperlipidemia
SNOMEDCT:267434003
GeneRIF:12370850
BioportalImporter v.1.2
SNOMEDCT:238040008
MSH:D006950
ICD9:272.2
Mixed hyperlipidaemia[accessedResource: DOID:13809][accessDate: 2009-11-30]
Familial combined hyperlipidemia (disorder) [Ambiguous][accessedResource: DOID:13809][accessDate: 2009-11-30]
Familial multiple lipoprotein-type hyperlipidemia (disorder)[accessedResource: DOID:13809][accessDate: 2009-11-30]
GeneRIF:12468272
Mixed Hyperlipidemia[accessedResource: DOID:13809][accessDate: 2009-11-30]
GeneRIF:12738753
GeneRIF:14991056
GeneRIF:16076849
Type IIb Hyperlipoproteinemia[accessedResource: DOID:13809][accessDate: 2009-11-30]
Hyperbetalipoproteinemia with prebetalipoproteinemia[accessedResource: DOID:13809][accessDate: 2009-11-30]
GeneRIF:15959806
GeneRIF:11979403
James Malone
A type of familial lipid metabolism disorder characterized by a variable pattern of elevated plasma CHOLESTEROL and/or TRIGLYCERIDES. Multiple genes on different chromosomes may be involved, such as the major late transcription factor (UPSTREAM STIMULATORY FACTORS) on CHROMOSOME 1.[accessedResource: MSH:D006950][accessDate: 2009-11-30]
Mixed hyperlipidemia (disorder)[accessedResource: DOID:13809][accessDate: 2009-11-30]
Familial combined hyperlipidemia (disorder)[accessedResource: DOID:13809][accessDate: 2009-11-30]
GeneRIF:14680975
GeneRIF:12006395
DOID:13809
GeneRIF:15976322
GeneRIF:12401883
SNOMEDCT:299465007
GeneRIF:15136067
CORL105
James Malone
Ele Holloway
MAT:0000034
Arterial subtree[accessedResource: FMAID:50720][accessDate: 2009-11-30]
TAO:0000005
arterial system[accessedResource: MAT:0000034][accessDate: 2009-11-30]
BioportalImporter v.1.2
ZFA:0000005
EMAPA:16201
artery
XAO:0000114
Arterial vessel[accessedResource: FMAID:50720][accessDate: 2009-11-30]
MA:0000061
FMAID:50720
BTO:0000573
Any of the tubular branching muscular- and elastic-walled vessels that carry blood from the heart through the body.[accessedResource: BTO:0000573][accessDate: 2009-11-30]
EV:0100026
Subdivision of arterial tree (organ) which consists of branching sets of tubes (arterial trunk) that form a tree; together with other arterial trees (organ part), it constitutes an arterial tree (organ). Examples: pulmonary arterial tree, right coronary arterial tree, superior mesenteric tree.[accessedResource: FMAID:50720][accessDate: 2009-11-30]
Arterial tree organ part[accessedResource: FMAID:50720][accessDate: 2009-11-30]
EHDAA:396
James Malone
MFO:0002900
myelocyte
A cell derived from a promyelocyte. It differentiates into a metamyelocyte. It has a diameter of 10-18 micrometer, and an oval or round nucleus with finely granulated chromatin.[accessedResource: NCIt:C13115][accessDate: 2009-11-30]
NCIt:C13115
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
biceps femoris
NCIt:C53147
James Malone
BioportalImporter v.1.2
A muscle in the back of the thigh. Its action involves the knee flexion and hip extension.
[Source: NCI Thesaurus C53147]
James Malone
Ele Holloway
NCIH441
XAO:0000163
Thymus[accessedResource: FMAID:9607][accessDate: 2009-11-30]
ZFA:0001078
TAO:0001078
Thymus gland[accessedResource: FMAID:9607][accessDate: 2009-11-30]
MA:0000142
BioportalImporter v.1.2
FMAID:9607
true
EHDAA:9119
MFO:0003240
EV:0100138
SAEL:107
obsolete_thymus
EMAPA:18768
MAT:0000080
James Malone
BTO:0001408
locus coeruleus
embryonic gastric caecum
James Malone
FBbt:00005629
Tomasz Adamusiak
Jie Zheng
small adipocyte
GeneRIF:15535131
GeneRIF:15985194
GeneRIF:12202149
ICD9:043.2
GeneRIF:15181567
ICD9:042.2
HUMAN IMMUNODEFICIENCY VIRUS [HIV] INFECTION[accessedResource: DOID:526][accessDate: 2009-11-30]
SNOMEDCT:187453001
GeneRIF:15660419
GeneRIF:11834941
GeneRIF:16015368
GeneRIF:12834106
Human immunodeficiency virus infection (disorder)[accessedResource: DOID:526][accessDate: 2009-11-30]
GeneRIF:15192272
GeneRIF:11861282
ICD9:042.0
GeneRIF:15117454
ICD9:042-042.99
GeneRIF:11932418
GeneRIF:12482395
GeneRIF:15265023
GeneRIF:12964117
GeneRIF:12237292
Includes the spectrum of human immunodeficiency virus infections that range from asymptomatic seropositivity, thru AIDS-related complex (ARC), to acquired immunodeficiency syndrome (AIDS).[accessedResource: MSH:D015658][accessDate: 2009-11-30]
GeneRIF:12847229
GeneRIF:15879099
GeneRIF:15869407
GeneRIF:14688346
human immunodeficiency virus
GeneRIF:12829794
GeneRIF:12468426
GeneRIF:15708596
GeneRIF:12679439
GeneRIF:15057492
GeneRIF:12514416
GeneRIF:12640191
GeneRIF:12531788
GeneRIF:15242539
GeneRIF:12368356
GeneRIF:12757260
ICD9:043.0
GeneRIF:11937573
James Malone
ICD9:043.1
GeneRIF:12131187
Human immunodeficiency virus infection[accessedResource: DOID:526][accessDate: 2009-11-30]
GeneRIF:12619446
GeneRIF:15821887
GeneRIF:12220649
GeneRIF:15556689
GeneRIF:12639247
Human immunodeficiency virus disease[accessedResource: DOID:526][accessDate: 2009-11-30]
GeneRIF:12552446
GeneRIF:14645006
GeneRIF:14984591
GeneRIF:12713059
GeneRIF:15702055
HIV infection[accessedResource: DOID:526][accessDate: 2009-11-30]
GeneRIF:12767998
GeneRIF:15737629
DOID:526
GeneRIF:12645627
GeneRIF:14554087
HIV
GeneRIF:14501804
ICD9:044.0
GeneRIF:11466389
GeneRIF:15661918
Unspecified human immunodeficiency virus [HIV] disease (disorder)[accessedResource: DOID:526][accessDate: 2009-11-30]
ICD9:042
GeneRIF:14985764
GeneRIF:15829920
GeneRIF:14983032
GeneRIF:12751031
GeneRIF:15596839
GeneRIF:15018667
GeneRIF:11709782
GeneRIF:12769187
GeneRIF:11862398
GeneRIF:11801693
NCIt:C3108
ICD9:042.9
GeneRIF:12193696
GeneRIF:15555533
GeneRIF:14687494
GeneRIF:15564514
GeneRIF:12900520
GeneRIF:12192009
GeneRIF:15175077
GeneRIF:12427285
GeneRIF:12610138
GeneRIF:12803993
GeneRIF:15156567
GeneRIF:14764743
BioportalImporter v.1.2
GeneRIF:12051740
GeneRIF:16136472
GeneRIF:12639246
GeneRIF:14501803
GeneRIF:12594292
GeneRIF:12960279
GeneRIF:15751767
GeneRIF:15326605
GeneRIF:14978126
GeneRIF:12473840
GeneRIF:15452260
GeneRIF:12586555
SNOMEDCT:86406008
ICD9:044.9
GeneRIF:15741250
GeneRIF:15297876
GeneRIF:12884293
SNOMEDCT:187438009
ICD9:043.3
GeneRIF:12815099
GeneRIF:12510154
Human immunodeficiency virus [HIV] disease[accessedResource: DOID:526][accessDate: 2009-11-30]
ICD9:042.1
GeneRIF:12167863
Human immunodeficiency virus disease (disorder)[accessedResource: DOID:526][accessDate: 2009-11-30]
GeneRIF:15541354
GeneRIF:15319853
GeneRIF:16081817
GeneRIF:15272203
GeneRIF:15128805
GeneRIF:15466648
GeneRIF:12515722
GeneRIF:16284526
GeneRIF:16156786
GeneRIF:11466339
MSH:D015658
ICD9:043.9
GeneRIF:15864119
GeneRIF:15735450
GeneRIF:12767990
GeneRIF:12100031
GeneRIF:14502291
GeneRIF:15585099
GeneRIF:11983108
GeneRIF:12513914
An assay with input RNA
RNA assay
James Malone
Skin of vulva[accessedResource: FMAID:225311][accessDate: 2009-11-30]
MA:0000395
EV:0100118
vulva
BTO:0001055
The external female genital organs, including the clitoris, vaginal lips, and the opening to the vagina.[accessedResource: BTO:0001055][accessDate: 2009-11-30]
MAT:0000169
James Malone
FBbt:00004926
FMAID:225311
BioportalImporter v.1.2
Skin of female pudendum[accessedResource: FMAID:225311][accessDate: 2009-11-30]
WBbt:0006748
auditory system
AAO:0000631
ZFA:0001138
ear
MFO:0003660
Tomasz Adamusiak
XAO:0000189
EV:0100353
NIFSTD:birnlex_1062
BTO:0000368
BioportalImporter v.1.2
MAT:0000138
EHDAA:502
EMAPA:16193
auditory apparatus[accessedResource: MAT:0000138][accessDate: 2009-11-30]
TAO:0001138
James Malone
The organ of hearing.[accessedResource: BTO:0000368][accessDate: 2009-11-30]
FMAID:52780
MA:0000236
lapatinib
A quinazoline that has formula C29H26ClFN4O4S.[accessedResource: CHEBI:49603][accessDate: 2009-11-30]
CHEBI:49603
BioportalImporter v.1.2
N-[3-chloro-4-(3-fluorobenzyloxy)phenyl]-6-[5-({[2-(methanesulfonyl)ethyl]amino}methyl)furan-2-yl]quinazolin-4-amine[accessedResource: CHEBI:49603][accessDate: 2009-11-30]
A fatty acid anion that has formula C4H7O2.[accessedResource: CHEBI:17968][accessDate: 2009-11-30]
butyrate
BioportalImporter v.1.2
CHEBI:17968
butanoate[accessedResource: CHEBI:17968][accessDate: 2009-11-30]
HT1197
James Malone
Ele Holloway
James Malone
FBbt:00001778
dorsal mesothoracic disc
FMAID:67343
Fertilized oocyte[accessedResource: FMAID:67343][accessDate: 2009-11-30]
Cervical canal of uterus[accessedResource: FMAID:17740][accessDate: 2009-11-30]
EV:0100114
Cervix of uterus[accessedResource: FMAID:17740][accessDate: 2009-11-30]
Cervical canal[accessedResource: FMAID:17740][accessDate: 2009-11-30]
SAEL:118
Uterine cervix[accessedResource: FMAID:17740][accessDate: 2009-11-30]
James Malone
A constricted portion of an organ or part; especially: the narrow outer end of the uterus.[accessedResource: BTO:0001421][accessDate: 2009-11-30]
Ovum[accessedResource: FMAID:67343][accessDate: 2009-11-30]
FMAID:17740
BTO:0001421
X chromosome-bearing ovum[accessedResource: FMAID:67343][accessDate: 2009-11-30]
Mature ovum[accessedResource: FMAID:67343][accessDate: 2009-11-30]
BioportalImporter v.1.2
cervix
MAT:0000292
X-bearing ovum[accessedResource: FMAID:67343][accessDate: 2009-11-30]
Neck of uterus[accessedResource: FMAID:17740][accessDate: 2009-11-30]
facioscapulohumeral muscular dystrophy
GeneRIF:12874395
SNOMEDCT:399091004
An autosomal dominant degenerative muscle disease characterized by slowly progressive weakness of the muscles of the face, upper-arm, and shoulder girdle. The onset of symptoms usually occurs in the first or second decade of life. Affected individuals usually present with impairment of upper extremity elevation. This tends to be followed by facial weakness, primarily involving the orbicularis oris and orbicularis oculi muscles. (Neuromuscul Disord 1997;7(1):55-62; Adams et al., Principles of Neurology, 6th ed, p1420)[accessedResource: MSH:D020391][accessDate: 2009-11-30]
DOID:11727
GeneRIF:15520407
James Malone
BioportalImporter v.1.2
Landouzy Dejerine muscular dystrophy[accessedResource: DOID:11727][accessDate: 2009-11-30]
MSH:D020391
GeneRIF:15551024
NCIH1436
James Malone
Ele Holloway
James Malone
Ele Holloway
COLO829
GM12814
James Malone
Fetal Blood[accessedResource: NCIt:C22560][accessDate: 2009-11-30]
Blood (fetal) (MMHCC)[accessedResource: NCIt:C22560][accessDate: 2009-11-30]
fetal blood cell
NCIt:C22560
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
sciatic nerve
NCIt:C52810
The largest nerve of the body: origin, sacral plexus-L4-S3; it leaves the pelvis through the greater sciatic foramen; branches, divides into the tibial and common peroneal nerves, usually in lower third of thigh; distribution-see individual branches, in this table; modality, general sensory and motor.[accessedResource: BTO:0001221][accessDate: 2009-11-30]
The longest single nerve that is formed by the merging of the ventral rami of the L4, L5, and S1 in the pelvis and passes down the lower limb where it divides into the common peroneal and tibial nerves.[accessedResource: NCIt:C52810][accessDate: 2009-11-30]
James Malone
FMA:19034
BioportalImporter v.1.2
BTO:0001221
NCIH446
James Malone
Ele Holloway
BioportalImporter v.1.2
MAT:0000448
BTO:0001067
pineal gland
A small, cone-shaped organ in the brain of most vertebrates that secretes the hormone melatonin.[accessedResource: BTO:0001067][accessDate: 2009-11-30]
MFO:0079940
FMAID:62033
XAO:0000160
EV:0100131
Circumventricular organ of neuraxis which is shaped like a pine cone and attached on the midline near the posterior and habenular commissures of the epithalamus.[accessedResource: FMAID:62033][accessDate: 2009-11-30]
Pineal body[accessedResource: FMAID:62033][accessDate: 2009-11-30]
James Malone
MA:0000175
Tomasz Adamusiak
James Malone
polycythemia vera
BTO:0000146
The part of the brain composed of the mesencephalon, pons, and medulla oblongata and connecting the spinal cord with the forebrain and cerebrum.[accessedResource: BTO:0000146][accessDate: 2009-11-30]
brain stem
James Malone
Tomasz Adamusiak
BioportalImporter v.1.2
NIFSTD:birnlex_1565
large adipocyte
Tomasz Adamusiak
Jie Zheng
NCIH508
James Malone
Ele Holloway
white fat
MAT:0000199
MA:0000058
James Malone
BioportalImporter v.1.2
An assay with input protein
protein assay
James Malone
GeneRIF:12634405
Acquired human immunodeficiency virus infection syndrome NOS (disorder)[accessedResource: DOID:635][accessDate: 2009-11-30]
GeneRIF:12944981
GeneRIF:11744690
BioportalImporter v.1.2
GeneRIF:11950939
GeneRIF:14506268
GeneRIF:15793370
GeneRIF:15814716
GeneRIF:12964118
SNOMEDCT:62479008
An acquired defect of cellular immunity associated with infection by the human immunodeficiency virus (HIV), a CD4-positive T-lymphocyte count under 200 cells/microliter or less than 14% of total lymphocytes, and increased susceptibility to opportunistic infections and malignant neoplasms. Clinical manifestations also include emaciation (wasting) and dementia. These elements reflect criteria for AIDS as defined by the CDC in 1993.[accessedResource: MSH:D000163][accessDate: 2009-11-30]
AIDS (disorder)[accessedResource: DOID:635][accessDate: 2009-11-30]
Acquired Immunodeficiency Syndrome, AIDS[accessedResource: NCIt:C2851][accessDate: 2009-11-30]
Acquired immunodeficiency syndrome is a HIV infection consisting of a disease of the human immune system that is characterized cytologically especially by a reduction in the numbers of CD4-bearing helper T cells to 20 percent or less of normal thereby rendering the subject highly vulnerable to life-threatening conditions (as Pneumocystis carinii pneumonia) and to some that become life threatening (as Kaposi's sarcoma) and that is caused by infection with HIV commonly transmitted in infected blood especially during illicit intravenous drug use and in bodily secretions (as semen) during sexual intercourse.[accessedResource: DOID:635][accessDate: 2009-11-30]
NCIt:C2851
MSH:D000163
acquired immunodeficiency syndrome[accessedResource: DOID:635][accessDate: 2009-11-30]
GeneRIF:16014568
GeneRIF:15865925
acquired immunedeficiency syndrome
GeneRIF:15327898
AIDS
GeneRIF:14555765
Acquired immune deficiency syndrome[accessedResource: DOID:635][accessDate: 2009-11-30]
GeneRIF:14699011
GeneRIF:15809899
GeneRIF:15377788
GeneRIF:12468426
GeneRIF:15042330
GeneRIF:12854077
GeneRIF:14523088
GeneRIF:12749011
GeneRIF:12761559
GeneRIF:12750160
GeneRIF:12427286
Acquired Immune Deficiency[accessedResource: DOID:635][accessDate: 2009-11-30]
GeneRIF:11121048
GeneRIF:14557639
DOID:635
Acquired immune defic. syndr.[accessedResource: DOID:635][accessDate: 2009-11-30]
GeneRIF:14990729
SNOMEDCT:186715004
James Malone
GeneRIF:12501250
GeneRIF:12114533
GeneRIF:12372282
GeneRIF:12134147
A syndrome resulting from the acquired deficiency of cellular immunity caused by the human immunodeficiency virus (HIV). It is characterized by the reduction of the Helper T-lymphocytes in the peripheral blood and the lymph nodes. Symptoms include generalized lymphadenopathy, fever, weight loss, and chronic diarrhea. Patients with AIDS are especially susceptible to opportunistic infections (usually pneumocystis carinii pneumonia, cytomegalovirus (CMV) infections, tuberculosis, candida infections, and cryptococcosis), and the development of malignant neoplasms (usually non-Hodgkin's lymphoma and Kaposi's sarcoma). The human immunodeficiency virus is transmitted through sexual contact, sharing of contaminated needles, or transfusion of contaminated blood. -- 2004[accessedResource: NCIt:C2851][accessDate: 2009-11-30]
GeneRIF:15637236
ZFA:0000669
MAT:0000084
The soft, fatty, vascular tissue that fills most bone cavities and is the source of red blood cells and many white blood cells.[accessedResource: BTO:0000141][accessDate: 2009-11-30]
TAO:0000669
bone marrow
XAO:0000123
James Malone
EV:0100046
BioportalImporter v.1.2
FMAID:9608
SAEL:11
BTO:0000141
Medulla ossea[accessedResource: FMAID:9608][accessDate: 2009-11-30]
MA:0000134
deltoid
James Malone
BioportalImporter v.1.2
NCIt:C32446
(5S,6R,7E,9E,11Z,13E,15S)-5,6,15-trihydroxyicosa-7,9,11,13-tetraenoic acid[accessedResource: CHEBI:6498][accessDate: 2009-11-30]
Tomasz Adamusiak
BioportalImporter v.1.2
NIFSTD:nifext_5168
CHEBI:6498
lipoxin A4
A lipoxin that has formula C20H32O5.[accessedResource: CHEBI:6498][accessDate: 2009-11-30]
HuNS1
James Malone
Ele Holloway
true
NCIt:C12462
Duplicate use EFO_0000900
BioportalImporter v.1.2
obsolete_dorsal root ganglion
Sensory ganglia located on the dorsal spinal roots within the vertebral column. (MeSH)[accessedResource: NCIt:C12462][accessDate: 2009-11-30]
Dorsal Root Ganglion[accessedResource: NCIt:C12462][accessDate: 2009-11-30]
Subdivision of venous tree (organ) which consists of branching sets of tubes (venous trunks) that form a tree; together with other venous trees (organ part), it constitutes a venous tree (organ). Examples: subclavian venous tree, jugular tree, extrahepatic portal tree, common iliac venous tree.[accessedResource: FMAID:50723][accessDate: 2009-11-30]
EV:0100031
Venous vessel[accessedResource: FMAID:50723][accessDate: 2009-11-30]
BioportalImporter v.1.2
BTO:0000234
Venous subtree[accessedResource: FMAID:50723][accessDate: 2009-11-30]
FMAID:50723
MA:0000066
vein
venous system[accessedResource: MAT:0000037][accessDate: 2009-11-30]
EHDAA:486
Venous tree organ part[accessedResource: FMAID:50723][accessDate: 2009-11-30]
EMAPA:16240
James Malone
Any of the tubular branching vessels that carry blood from the capillaries toward the heart.[accessedResource: BTO:0000234][accessDate: 2009-11-30]
TAO:0000082
XAO:0000115
ZFA:0000082
MAT:0000037
James Malone
The procedure used to obtain something from a mixture or compound by chemical or physical or mechanical means, e.g. DNA/RNA extraction
DNA/RNA extraction
extraction protocol
A bisphenol that has formula C15H16O2.[accessedResource: CHEBI:33216][accessDate: 2009-11-30]
bisphenol A
BioportalImporter v.1.2
CHEBI:33216
4,4'-(propane-2,2-diyl)diphenol[accessedResource: CHEBI:33216][accessDate: 2009-11-30]
GM12763
James Malone
UO:0000033
James Malone
BioportalImporter v.1.2
A time unit which is equal to 24 hours.[accessedResource: UO:0000033][accessDate: 2009-11-30]
A day is a derived time unit which is equal to 24 hours.
day
The tough exterior covering of a woody root or stem; specifically: the tissues outside the cambium that include an inner layer especially of secondary phloem and an outer layer of periderm.[accessedResource: BTO:0001301][accessDate: 2009-11-30]
BTO:0001301
MAT:0000360
BioportalImporter v.1.2
bark
James Malone
PO:0004518
A light-perceptive organ consisting of an aggregation of optic elements (ommatidia) generally located on each side of the head; the cuticular part (cornea) consists of several hundred circular corneal facets (lenses); bounded by the ocular sclerite.[accessedResource: TGMA:0000024][accessDate: 2009-11-30]
BTO:0000439
FBbt:00004508
MAT:0000140
The compound eye is a light sensing organ composed of ommatidia.[accessedResource: FBbt:00004508][accessDate: 2009-11-30]
AAO:0000632
Orbital region[accessedResource: FMAID:54448][accessDate: 2009-11-30]
BioportalImporter v.1.2
visual system
NIFSTD:birnlex_1169
TAO:0001127
TAO:0000107
FMAID:54448
Tomasz Adamusiak
ZFA:0000107
EV:0100336
adult compound eye[accessedResource: MAT:0000140][accessDate: 2009-11-30]
XAO:0000179
MA:0000261
TADS:0000061
An organ of sight; especially: a nearly spherical hollow organ that is lined with a sensitive retina, is lodged in a bony orbit in the skull, is the vertebrate organ of sight, and is normally paired.n2: All the visible structures within and surrounding the orbit and including eyelids, eyelashes, and eyebrows.[accessedResource: BTO:0000439][accessDate: 2009-11-30]
EHDAA:936
EMAPA:16198
Orbital part of face[accessedResource: FMAID:54448][accessDate: 2009-11-30]
eye
MFO:0003480
James Malone
TGMA:0000024
gene name
Adrenal Gland Paraganglioma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
Intraadrenal Paraganglioma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
Adrenal Gland Chromaffin Paraganglioma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
Adrenal Gland Chromaffinoma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
BioportalImporter v.1.2
Adrenal Medullary Pheochromocytoma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
James Malone
Phaeochromocytoma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
Chromaffin Paraganglioma of the Adrenal Gland[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
A benign or malignant neuroendocrine neoplasm of the sympathetic nervous system that secretes catecholamines. It arises from the chromaffin cells of the adrenal medulla. Clinical presentation includes headaches, palpitations, chest and abdominal pain, hypertension, fever, and tremor. Microscopically, a characteristic nesting (zellballen) growth pattern is usually seen. Other growth patterns including trabecular pattern may also be present.[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
NCIt:C3326
adrenal gland pheochromocytoma
Adrenal Pheochromocytoma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
Pheochromocytoma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
PCC[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
Adrenal Medullary Paraganglioma[accessedResource: NCIt:C3326][accessDate: 2009-11-30]
endometrioid carcinoma
An adenocarcinoma characterized by the presence of cells resembling the glandular cells of the ENDOMETRIUM. It is a common histological type of ovarian CARCINOMA and ENDOMETRIAL CARCINOMA. There is a high frequency of co-occurrence of this form of adenocarcinoma in both tissues.[accessedResource: MSH:D018269][accessDate: 2009-11-30]
GeneRIF:15781627
Female Reproductive Endometrioid Carcinoma[accessedResource: NCIt:C3769][accessDate: 2009-11-30]
DOID:3000
An adenocarcinoma characterized by the presence of malignant glandular epithelial cells resembling endometrial cells. It can arise from the uterine body, ovary, fallopian tube, cervix, vagina, and uterine ligament.
[Source: NCI Thesaurus C3769]
GeneRIF:14599866
MSH:D018269
SNOMEDCT:30289006
GeneRIF:14559803
Endometrioid Carcinoma of Female Reproductive System[accessedResource: DOID:3000][accessDate: 2009-11-30]
James Malone
Endometrioid carcinoma (morphologic abnormality)[accessedResource: DOID:3000][accessDate: 2009-11-30]
NCIt:C3769
GeneRIF:11957146
Endometrioid Carcinoma of the Female Reproductive System[accessedResource: NCIt:C3769][accessDate: 2009-11-30]
GeneRIF:14559989
GeneRIF:11748987
Endometrioid Adenocarcinoma[accessedResource: NCIt:C3769][accessDate: 2009-11-30]
BioportalImporter v.1.2
The lateral expansion of the posterior part of the cibarium.[accessedResource: TGMA:0000124][accessDate: 2009-11-30]
James Malone
unfertilised egg
ZFA:0009008
female gamete
SAEL:114
BioportalImporter v.1.2
TGMA:0000124
MA:0000388
unfertilized egg
FBbt:00015288
MAT:0000124
James Malone
Tomasz Adamusiak
The physical state or matrix used to provide nutrients to the organism (e.g., liquid, agar, soil).
probably a role
MO_545
Jie Zheng
media
liquid, agar, soil
Primordium of the circular visceral muscle of the trunk. Becomes distinct from the rest of the trunk mesoderm by stage 11 when 2 distinct layers of trunk mesoderm are apparent, the inner of which is the circular visceral muscle primordium. By stage 12, these cells form a palisade consisting of a dorsal row an a ventral row of tightly packed cells. These cells adhere to the anterior and posterior midgut rudiments as they extend. During dorsal closure they spread out to encircle the midgut.[accessedResource: FBbt:00017015][accessDate: 2009-11-30]
circular visceral mesoderm primordium
James Malone
BioportalImporter v.1.2
FBbt:00017015
The excretory organ of the embryo, arising caudal to the pronephros or pronephric rudiments and using its duct; it consists of a long tube in the lower part of the body cavity, running parallel with the vertebral axis and joined at right angles by a row of twisting tubes.[accessedResource: BTO:0001542][accessDate: 2009-11-30]
BTO:0001542
mesonephros - adult[accessedResource: MAT:0000118][accessDate: 2009-11-30]
mesonephros
James Malone
BioportalImporter v.1.2
mesonephrpric kidney[accessedResource: MAT:0000118][accessDate: 2009-11-30]
MFO:0003300
The functioning kidney in fish and amphibia[accessedResource: MAT:0000118][accessDate: 2009-11-30]
MAT:0000118
ZFA:0000529
TAO:0000529
XAO:0000154
BTO:0000124
PO:0020048
microspore
BioportalImporter v.1.2
James Malone
Haploid cells produced by meiosis in the anthers of angiosperms; four microspores are produced from a single microsporocyte.[accessedResource: BTO:0000124][accessDate: 2009-11-30]
MAT:0000215
instrument design
James Malone
An instrument design is an information entity that describes the setup and design of an instrument.
NCIt:C25218
Tomasz Adamusiak
Procedure[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
SURGICAL AND MEDICAL PROCEDURES[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
Jie Zheng
Intervention[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
An activity that produces an effect, or that is intended to alter the course of a disease in a patient or population. This is a general term that encompasses the medical, social, behavioral, and environmental acts that can have preventive, therapeutic, or palliative effects.[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
medical procedure
BioportalImporter v.1.2
Intervention Strategies[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
Intervention or Procedure[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
Interventional[accessedResource: NCIt:C25218][accessDate: 2009-11-30]
NCIH661
James Malone
Ele Holloway
NCIH1623
James Malone
Ele Holloway
leg
James Malone
A limb of an animal used especially for supporting the body and for walking.[accessedResource: BTO:0000721][accessDate: 2009-11-30]
BioportalImporter v.1.2
One of the two lower extremities in humans used for locomotion and support.[accessedResource: NCIt:C32974][accessDate: 2009-11-30]
BTO:0000721
NCIt:C32974
MA:0000113
EV:0100312
Any of the three membranes that envelop the brain and spinal cord.[accessedResource: BTO:0000144][accessDate: 2009-11-30]
BTO:0000144
FMAID:9589
BioportalImporter v.1.2
SAEL:66
MAT:0000113
James Malone
EMAPA:17764
EHDAA:3688
meninges
FBbt:00005489
James Malone
dorsal trunk specific anlage
HuPT4
James Malone
Ele Holloway
Azoospermia (finding)[accessedResource: DOID:14227][accessDate: 2009-11-30]
James Malone
GeneRIF:15064832
GeneRIF:15379971
MSH:D009845
A condition of suboptimal concentration of SPERMATOZOA in the ejaculated SEMEN to ensure successful FERTILIZATION of an OVUM. In humans, oligospermia is defined as a sperm count below 20 million per milliliter semen.[accessedResource: MSH:D009845][accessDate: 2009-11-30]
GeneRIF:15044259
GeneRIF:12634316
DOID:14227
BioportalImporter v.1.2
GeneRIF:12399529
GeneRIF:16123080
GeneRIF:11499325
GeneRIF:16275267
GeneRIF:15253135
azoospermia
GeneRIF:12366783
GeneRIF:12161499
GeneRIF:11869379
GeneRIF:12399527
ICD9:606.0
GeneRIF:16213863
GeneRIF:15220464
GM12812
James Malone
EHDAA:420
1: A hollow muscular organ of vertebrate animals that by its rhythmic contraction acts as a force pump maintaining the circulation of the blood. n2: A structure in an invertebrate animal functionally analogous to the vertebrate heart.[accessedResource: BTO:0000562][accessDate: 2009-11-30]
FBbt:00003154
TAO:0000114
EV:0100018
heart
XAO:0000064
ZFA:0000114
FMAID:7088
SAEL:47
James Malone
BioportalImporter v.1.2
TADS:0000147
EMAPA:16105
BTO:0000562
Organ with cavitated organ parts, which is continuous with the systemic and
pulmonary arterial and venous trees. Examples: There is only one heart.[accessedResource: FMAID:7088][accessDate: 2009-11-30]
MFO:0080860
MAT:0000036
James Malone
BioportalImporter v.1.2
UO:0000034
A week is a derived time unit which is equal to 7 days.
A time unit which is equal to 7 days.[accessedResource: UO:0000034][accessDate: 2009-11-30]
week
BioportalImporter v.1.2
CHEBI:3139
(betaR)-N(alpha)-{[6-amino-2-((1S)-3-amino-1-{[(2S)-2,3-diamino-3-oxopropyl]amino}-3-oxopropyl)-5-methylpyrimidin-4-yl]carbonyl}-beta-{2-O-[3-O-(aminocarbonyl)-alpha-D-mannopyranosyl]-alpha-L-gulopyranosyloxy}-N-[(1R,2S,3S)-5-({(1S,2R)-1-[({2-[4-({[3-(dimethylsulfonio)propyl]amino}carbonyl)-2,4'-bi-1,3-thiazol-2'-yl]ethyl}amino)carbonyl]-2-hydroxypropyl}amino)-3-hydroxy-4-methyl-5-oxopentan-2-yl]-L-histidinamide[accessedResource: CHEBI:3139][accessDate: 2009-11-30]
A bleomycin that has formula C55H84N17O21S3.[accessedResource: CHEBI:3139][accessDate: 2009-11-30]
bleomycin A2
xylem
BioportalImporter v.1.2
MAT:0000363
A complex tissue in the vascular system of higher plants that consists of vessels, tracheids, or both usually together with wood fibers and parenchyma cells, functions chiefly in conduction of water and dissolved minerals but also in support and food storage, and typically constitutes the woody element (as of a plant stem).[accessedResource: BTO:0001468][accessDate: 2009-11-30]
BTO:0001468
PO:0005352
James Malone
CHEBI:16412
BioportalImporter v.1.2
lipopolysaccharide
Natural compounds consisting of a trisaccharide repeating unit (two heptose units and octulosonic acid) with oligosaccharide side chains and 3-hydroxytetradecanoic acid units (they are a major constituent of the cell walls of Gram-negative bacteria).[accessedResource: CHEBI:16412][accessDate: 2009-11-30]
XAO:0003033
SAEL:72
AAO:0000334
MFO:0003640
FBbt:00005157
EMAPA:16542
TAO:0001149
FMAID:46472
nose
BioportalImporter v.1.2
BTO:0000840
EHDAA:1502
EV:0100037
James Malone
Any sense organ (FBbt:00005155) that has function 'detection of chemical stimulus involved in sensory perception (GO:0050907)'.[accessedResource: FBbt:00005157][accessDate: 2009-11-30]
ZFA:0001149
1a: The part of the face that bears the nostrils and covers the anterior part of the nasal cavity; broadly: this part together with the nasal cavity.nb: The anterior part of the head at the top or end of the muzzle: snout, proboscis.n2. The vertebrate olfactory organ.[accessedResource: BTO:0000840][accessDate: 2009-11-30]
XAO:0000201
MA:0000281
*Subdivision of face which consists of the nasal skeleton, nasal septum and nasal cavity.[accessedResource: FMAID:46472][accessDate: 2009-11-30]
CL:0000785
James Malone
BioportalImporter v.1.2
A B cell that is mature, having left the bone marrow. Initially, these cells are IgM-positive and IgD-positive, and they can be activated by antigen.[accessedResource: CL:0000785][accessDate: 2009-11-30]
mature B-lymphocyte[accessedResource: CL:0000785][accessDate: 2009-11-30]
721 B lymphoblasts
mature B cell
DOID:10314
Endocarditis (disorder)[accessedResource: DOID:10314][accessDate: 2009-11-30]
Inflammation of the endocardium.
[Source: NCI Thesaurus C34582]
Inflammation of the inner lining of the heart (ENDOCARDIUM), the continuous membrane lining the four chambers and HEART VALVES. It is often caused by microorganisms including bacteria, viruses, fungi, and rickettsiae. Left untreated, endocarditis can damage heart valves and become life-threatening.[accessedResource: MSH:D004696][accessDate: 2009-11-30]
SNOMEDCT:56819008
endocarditis
A heart disease involving non-infectious inflammation of the endocardium (inner layer of the heart).[accessedResource: DOID:10314][accessDate: 2009-11-30]
BioportalImporter v.1.2
non-infective endocarditis[accessedResource: DOID:10314][accessDate: 2009-11-30]
Endocarditis NOS[accessedResource: DOID:10314][accessDate: 2009-11-30]
MSH:D004696
James Malone
NCIt:C34582
gene
Illumina genome analyzer II
Is an instrument is which supports massively parallel sequencing of nucleic acids
Helen Parkinson
high throughput sequencer
BioportalImporter v.1.0
James Malone
FMAID:7209
TADS:0000400
ZFA:0000403
TAO:0000403
FBbt:00004865
animal ovary
AAO:0000371
SAEL:76
MA:0000384
MAT:0000125
EMAPA:17962
XAO:0000258
EV:0100111
EHDAA:8124
FBbt:00005072
James Malone
BioportalImporter v.1.2
circular visceral muscle fibers
circular visceral muscle fiber[accessedResource: FBbt:00005072][accessDate: 2009-11-30]
FMAID:7203
1: One of a pair of vertebrate organs situated in the body cavity near the spinal column that excrete waste products of metabolism, in humans are bean-shaped organs about 4 1/2 inches (11 1/2 centimeters) long lying behind the peritoneum in a mass of fatty tissue, and consist chiefly of nephrons by which urine is secreted, collected, and discharged into a main cavity whence it is conveyed by the ureter to the bladder.n2: Any of various excretory organs of invertebrate animals.[accessedResource: BTO:0000671][accessDate: 2009-11-30]
AAO:0000250
MAT:0000119
metanephros
EMAPA:17373
SAEL:57
MA:0000368
BioportalImporter v.1.2
EV:0100096
kidney
EHDAA:5911
WBbt:0005775
James Malone
BTO:0000671
OntologyMappingImporter following MAT:0000214
James Malone
megaspore
PO:0020019
MAT:0000214
embryonic day 18.5
Tomasz Adamusiak
Jie Zheng
Analyte role is a role borne by a molecular entity and realized in an analyte assay which achieves the objective to measure the magnitude/concentration/amount of the analyte in the entity bearing evaluant role[accessedResource: OBI_0000275][accessDate: 2009-11-30]
Analyte role is a role borne by a material entity and realized by implementation of an analyte measuring assay with objective to detect the magnitude/concentration/ amount of the analyte in the entity bearing evaluant role.
OBI_0000275
analyte
James Malone
BioportalImporter v.1.2
GeneRIF:15775704
GeneRIF:15184081
GeneRIF:11462247
GeneRIF:15215328
GeneRIF:16230078
Inflammation of the pancreas.[accessedResource: NCIt:C3306][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:15316224
GeneRIF:16038043
GeneRIF:14762792
GeneRIF:12360463
James Malone
GeneRIF:12120224
GeneRIF:11702203
GeneRIF:14688470
MSH:D010195
GeneRIF:14526128
GeneRIF:12401800
INFLAMMATION of the PANCREAS. Pancreatitis is classified as acute unless there are computed tomographic or endoscopic retrograde cholangiopancreatographic findings of CHRONIC PANCREATITIS (International Symposium on Acute Pancreatitis, Atlanta, 1992). The two most common forms of acute pancreatitis are ALCOHOLIC PANCREATITIS and gallstone pancreatitis.[accessedResource: MSH:D010195][accessDate: 2009-11-30]
GeneRIF:15237442
GeneRIF:12825076
GeneRIF:15572849
GeneRIF:11825647
GeneRIF:15786540
DOID:4989
NCIt:C3306
GeneRIF:12011155
GeneRIF:15458925
GeneRIF:12765848
pancreatitis
GeneRIF:12227654
GeneRIF:12360464
GeneRIF:11961487
SNOMEDCT:75694006
RKOE6
James Malone
Ele Holloway
James Malone
Ele Holloway
NCIH1618
FBbt:00000489
dorsal prothoracic pharyngeal muscle
James Malone
Hep3B
James Malone
Ele Holloway
A lithium salt that has formula ClLi.[accessedResource: CHEBI:48607][accessDate: 2009-11-30]
lithium chloride
BioportalImporter v.1.2
CHEBI:48607
James Malone
BioportalImporter v.1.2
NCIt:C34184
Gonadal Ridge[accessedResource: NCIt:C34184][accessDate: 2009-11-30]
embryonic gonadal ridge
James Malone
GM12761
obsolete_experiment
NIFSTD:birnlex_2117
Tomasz Adamusiak
TAO:0000097
EV:0100379
ZFA:0000097
carotid artery
MA:0001925
XAO:0000345
Common carotid artery[accessedResource: FMAID:3939][accessDate: 2009-11-30]
FMAID:3939
A key artery located in the front of the neck that carries blood from the heart to the brain. Cholesterol plaques on the inner wall of the carotid artery can lead to stroke.[accessedResource: BTO:0000168][accessDate: 2009-11-30]
EHDAA:6373
Trunk of common carotid tree[accessedResource: FMAID:3939][accessDate: 2009-11-30]
BTO:0000168
BioportalImporter v.1.2
James Malone
EMAPA:18609
germ cell
The reproductive cell in multicellular organisms.[accessedResource: CL:0000586][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
CL:0000586
A thiopurine that has formula C9H7N7O2S.[accessedResource: CHEBI:2948][accessDate: 2009-11-30]
James Malone
6-[(1-methyl-4-nitro-1H-imidazol-5-yl)sulfanyl]-7H-purine[accessedResource: CHEBI:2948][accessDate: 2009-11-30]
CHEBI:2948
azathioprine
BioportalImporter v.1.2
TBP-105Q
TBP-105Q is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/008075.html
James Malone
JAX:8075Â Â Â Â
MO_939
Tomasz Adamusiak
translational bias design
array
Helen Parkinson
An instrument which consists of nucleic acid or protein molecules bound to a substrate
microarray
BioportalImporter v.1.2
NCIt:C12396
The outer layer of the adrenal gland. It secretes mineralocorticoids, androgens, and glucocorticoids. (MeSH)
[Source: NCI Thesaurus C12396]
BTO:0000045
Cortex of suprarenal gland[accessedResource: FMAID:15632][accessDate: 2009-11-30]
EMAPA:18427
James Malone
Suprarenal cortex[accessedResource: FMAID:15632][accessDate: 2009-11-30]
XAO:0000165
MA:0000118
Cortex of adrenal gland[accessedResource: NCIt:C12396][accessDate: 2009-11-30]
Cortical[accessedResource: NCIt:C12396][accessDate: 2009-11-30]
adrenal cortex
MAT:0000494
The outer portion of the adrenal glands that produces several steroid hormones, including cortisol and aldosterone.[accessedResource: BTO:0000045][accessDate: 2009-11-30]
EV:0100136
MA:0000385
EMAPA:18984
EV:0100112
MAT:0000126
TADS:0000415
Organ with organ cavity which connects the uterine cavity to the peritoneal cavity. Examples: There are only two uterine tubes, the right and the left uterine tubes.[accessedResource: FMAID:18245][accessDate: 2009-11-30]
BioportalImporter v.1.2
Uterine tube[accessedResource: FMAID:18245][accessDate: 2009-11-30]
Fallopian tube[accessedResource: FMAID:18245][accessDate: 2009-11-30]
TAO:0000560
FMAID:18245
FBbt:00004911
oviduct
ZFA:0000560
A long slender tube that extends from the upper lateral cornu of the uterus to the region of the ovary of the same side; it is attached to the broad ligament by the mesosalpinx, and consists of an ampulla, an infundibulum, an isthmus, two ostia, and a pars uterina.[accessedResource: BTO:0000980][accessDate: 2009-11-30]
BTO:0000980
James Malone
CHEBI:46661
asbestos
BioportalImporter v.1.2
Fibrous incombustible mineral composed of magnesium and calcium silicates with or without other elements.[accessedResource: CHEBI:46661][accessDate: 2009-11-30]
http://www.arabidopsis.org/servlets/TairObject?id=1005158847&type=germplasm
CS57823 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158847&type=germplasm
CS57823
James Malone
true
obsolete_material type
redundant now and is synonymous to material type.
population of an organism, organism, organism part, cell
Controlled terms for the state of the BioMaterial. Each state (BioSource, different BioSamples, and LabeledExtract) have MaterialTypes. Examples are population of an organism, organism, organism part, cell
James Malone
Ele Holloway
SW1116
A subcategory of chronic obstructive pulmonary disease (COPD). It occurs in people who smoke and suffer from chronic bronchitis. It is characterized by inflation of the alveoli, alveolar wall damage, and reduction in the number of alveoli, resulting in difficulty breathing.[accessedResource: NCIt:C3348][accessDate: 2009-11-30]
NCIt:C3348
Pulmonary Emphysema[accessedResource: NCIt:C3348][accessDate: 2009-11-30]
emphysema
James Malone
BioportalImporter v.1.2
GeneRIF:14519636
GeneRIF:12152785
Malignant Neurilemmoma[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Neoplasms which arise from nerve sheaths formed by SCHWANN CELLS in the PERIPHERAL NERVOUS SYSTEM or by OLIGODENDROCYTES in the CENTRAL NERVOUS SYSTEM. Malignant peripheral nerve sheath tumors, NEUROFIBROMA, and NEURILEMMOMA are relatively common tumors in this category.[accessedResource: MSH:D018317][accessDate: 2009-11-30]
MSH:D018317
NCIt:C3798
Malignant Peripheral Nerve Sheath Tumour[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
GeneRIF:14991838
An uncommon, highly aggressive malignant tumor, arising from the peripheral nerves and affecting mostly adults in their third to sixth decades of life. It usually occurs in medium-sized and large nerves of the buttock, thigh, upper arm, or the paraspinal region. It may be associated with neurofibromatosis 1 (NF1).
[Source: NCI Thesaurus C3798]
GeneRIF:12917360
GeneRIF:12782393
malignant peripheral nerve sheath tumor
James Malone
Malignant Neoplasm of the Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
BioportalImporter v.1.2
GeneRIF:12730955
Malignant peripheral nerve sheath tumor (morphologic abnormality)[accessedResource: DOID:5940][accessDate: 2009-11-30]
MPNST[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant peripheral nerve sheath tumor [dup] (morphologic abnormality)[accessedResource: DOID:5940][accessDate: 2009-11-30]
SNOMEDCT:404037002
Malignant Neurilemoma[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Neoplasm of Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant peripheral nerve sheath tumor (disorder)[accessedResource: DOID:5940][accessDate: 2009-11-30]
Malignant Tumor of the Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
Malignant Schwannoma[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
GeneRIF:11642720
Malignant Tumor of Peripheral Nerve Sheath[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
GeneRIF:12660952
DOID:5940
SNOMEDCT:19897006
Malignant Peripheral Nerve Sheath Neoplasm[accessedResource: NCIt:C3798][accessDate: 2009-11-30]
MO_945
Jie Zheng
BioportalImporter v.1.2
DNA
deoxyribonucleic acid[accessedResource: CHEBI:16991][accessDate: 2009-11-30]
NIFSTD:sao454034570
High molecular weight, linear polymers, composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contain the genetic information of organisms.[accessedResource: CHEBI:16991][accessDate: 2009-11-30]
James Malone
CHEBI:16991
Tomasz Adamusiak
DNA is a chemical compound which has a high molecular weight, linear polymers and is composed of nucleotides containing deoxyribose and linked by phosphodiester bonds; DNA contains the genetic information of organisms.
deoxyribonucleic acids[accessedResource: CHEBI:16991][accessDate: 2009-11-30]
chronic pancreatitis (disorder)[accessedResource: DOID:13315][accessDate: 2009-11-30]
DOID:13315
CP - chronic pancreatitis[accessedResource: DOID:13315][accessDate: 2009-11-30]
GeneRIF:12131767
relapsing pancreatitis[accessedResource: DOID:13315][accessDate: 2009-11-30]
SNOMEDCT:235494005
chronic pancreatitis (disorder) [Ambiguous][accessedResource: DOID:13315][accessDate: 2009-11-30]
GeneRIF:14657708
GeneRIF:11950817
ICD9:577.1
GeneRIF:15097871
GeneRIF:12647793
GeneRIF:15097853
GeneRIF:15855826
GeneRIF:12142743
GeneRIF:15802940
INFLAMMATION of the PANCREAS that is characterized by recurring or persistent ABDOMINAL PAIN with or without STEATORRHEA or DIABETES MELLITUS. It is characterized by the irregular destruction of the pancreatic parenchyma which may be focal, segmental, or diffuse.[accessedResource: MSH:D050500][accessDate: 2009-11-30]
Relapsing pancreatitis (disorder)[accessedResource: DOID:13315][accessDate: 2009-11-30]
SNOMEDCT:233870001
BioportalImporter v.1.2
MSH:D050500
GeneRIF:15749232
GeneRIF:12808117
SNOMEDCT:234689009
James Malone
recurrent pancreatitis (disorder)[accessedResource: DOID:13315][accessDate: 2009-11-30]
Pancreatitis, recurrent[accessedResource: DOID:13315][accessDate: 2009-11-30]
GeneRIF:15066699
chronic pancreatitis
OntologyMappingImporter following MAT:0000213
James Malone
PO:0020094
MAT:0000213
plant egg
James Malone
Ele Holloway
NCIH630
James Malone
Ele Holloway
RL
A large muscle in the back of the lower leg. Its action involves the plantar flexion of the foot.[accessedResource: NCIt:C32666][accessDate: 2009-11-30]
The largest and most superficial muscle of the calf of the leg arising by two heads from the condyles of the femur and attaching to a tendon that becomes part of the Achilles tendon.[accessedResource: BTO:0000506][accessDate: 2009-11-30]
BioportalImporter v.1.2
Gastrocnemius Muscle[accessedResource: NCIt:C32666][accessDate: 2009-11-30]
BTO:0000506
NCIt:C32666
James Malone
gastrocnemius
James Malone
BioportalImporter v.1.2
lisinopril
CHEBI:43755
A dipeptide that has formula C21H31N3O5.[accessedResource: CHEBI:43755][accessDate: 2009-11-30]
N(2)-[(1S)-1-carboxy-3-phenylpropyl]-L-lysyl-L-proline[accessedResource: CHEBI:43755][accessDate: 2009-11-30]
Duplicate with EFO_0001187
true
obsolete_HepG2
1.8
James Malone
Ele Holloway
dorsal ridge
FBbt:00000090
James Malone
Acquired immune deficiency syndrome dementia complex[accessedResource: DOID:1305][accessDate: 2009-11-30]
DOID:1305
AIDS dementia
Tomasz Adamusiak
AIDS with dementia (disorder)[accessedResource: DOID:1305][accessDate: 2009-11-30]
NCIt:C2864
HIV associated cognitive and motor complex[accessedResource: DOID:1305][accessDate: 2009-11-30]
Ele Holloway
BioportalImporter v.1.2
AIDS dementia complex[accessedResource: DOID:1305][accessDate: 2009-11-30]
James Malone
Ele Holloway
NCIH1581
JAX:100010
B6C3F1 is a mouse strain as described in Jackson Laboratory http://jaxmice.jax.org/strain/100010.html
James Malone
B6C3F1
The main trunk of a plant; specifically: a primary plant axis that develops buds and shoots instead of roots.[accessedResource: BTO:0001300][accessDate: 2009-11-30]
James Malone
PO:0009047
BioportalImporter v.1.2
stem
BTO:0001300
MAT:0000239
GM12762
James Malone
CL:0000622
acinar cell
Tomasz Adamusiak
Jie Zheng
TAO:0000471
General anatomical term which refers to a chamber or cavity to which are connected one or more chambers or passageways. Examples: right atrium of heart, atrium of middle nasal meatus, atrium of tympanic cavity, atrium of alveolus.[accessedResource: FMAID:85574][accessDate: 2009-11-30]
FBbt:00005615
MAT:0000496
James Malone
BTO:0000903
MA:0000073
In the heart, the atrium is an upper chamber found on both sides of the heart. The left atrium receives red, oxygenated blood from the lungs by way of the pulmonary veins. The right atrium receives dark red blood from the other parts of the body.[accessedResource: BTO:0000903][accessDate: 2009-11-30]
EMAPA:16688
atrium
ZFA0000471
EHDAA:1265
FMAID:85574
EV:0100018
MFO:0080900
cardiac atrium
The paired upper chambers of the heart. The left atrium receives oxygenated blood from the pulmonary vein and pumps blood into the left ventricle. The right atrium receives venous deoxygenated blood from the entire body via the superior and inferior vena cavae and pumps blood into the right ventricle.
[Source: NCI Thesaurus C12728]
BioportalImporter v.1.2
EV:0100456
vessel[accessedResource: MAT:0000393][accessDate: 2009-11-30]
MFO:0002960
vasculature[accessedResource: MAT:0000393][accessDate: 2009-11-30]
TAO:0001079
SAEL:9
BTO:0001102
BioportalImporter v.1.2
James Malone
blood vessel
Any of the vessels through which blood circulates in the body.[accessedResource: BTO:0001102][accessDate: 2009-11-30]
MAT:0000393
1-chloro-2-[(2-chloroethyl)sulfanyl]ethane[accessedResource: CHEBI:25434][accessDate: 2009-11-30]
An ethyl sulfide that has formula C4H8Cl2S.[accessedResource: CHEBI:25434][accessDate: 2009-11-30]
bis(2-chloroethyl) sulfide
James Malone
BioportalImporter v.1.2
CHEBI:25434
Tomasz Adamusiak
MO_694
secreted protein identification design
James Malone
CS57822
http://www.arabidopsis.org/servlets/TairObject?id=1005158846&type=germplasm
CS57822 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158846&type=germplasm
James Malone
Ele Holloway
SW1088
James Malone
CL:0000015
male germ cell
testis - germ cell
adrenal medulla cell[accessedResource: MAT:0000071][accessDate: 2009-11-30]
BTO:0000047
SAEL:3
TAO:0009167
BioportalImporter v.1.2
Suprarenal gland[accessedResource: FMAID:9604][accessDate: 2009-11-30]
EV:0100135
Adrenal glands[accessedResource: NCIt:C12666][accessDate: 2009-11-30]
MAT:0000071
NCIt:C12666
Either of a pair of complex endocrine organs near the anterior medial border of the kidney consisting of a mesodermal cortex that produces glucocorticoid, mineralocorticoid, and androgenic hormones and an ectodermal medulla that produces epinephrine and norepinephrine.[accessedResource: BTO:0000047][accessDate: 2009-11-30]
MA:0000116
EMAPA:18426
XAO:0000164
adrenal gland
James Malone
FMAID:9604
A flattened, roughly triangular body resting upon the upper end of each kidney; it is one of the ductless glands furnishing internal secretions (epinephrine and norepinephrine from the medulla and steroid hormones from the cortex).[accessedResource: NCIt:C12666][accessDate: 2009-11-30]
Adrenals[accessedResource: NCIt:C12666][accessDate: 2009-11-30]
SAEL:119
WBbt:0006760
TADS:0000421
FMAID:17558
uterus
EV:0100113
BTO:0001424
MAT:0000127
FBbt:00004924
uterine horn[accessedResource: MAT:0000127][accessDate: 2009-11-30]
BioportalImporter v.1.2
An organ of the female mammal for containing and usually for nourishing the young during development previous to birth.[accessedResource: BTO:0001424][accessDate: 2009-11-30]
EMAPA:18985
Organ with organ cavity which is continuous proximally with the right and left uterine tubes and distally is connected to the vagina. Examples: There is only one uterus.[accessedResource: FMAID:17558][accessDate: 2009-11-30]
MA:0000389
James Malone
CHEBI:33697
MO_594
ribonucleic acids[accessedResource: CHEBI:33697][accessDate: 2009-11-30]
James Malone
Jie Zheng
RNA
BioportalImporter v.1.2
Tomasz Adamusiak
NIFSTD:sao1843715402
RNA is a chemical compound which are naturally occurring polyribonucleotides.
High molecular weight, linear polymers, composed of nucleotides containing ribose and linked by phosphodiester bonds; RNA is central to the synthesis of proteins.[accessedResource: CHEBI:33697][accessDate: 2009-11-30]
ribonucleic acid[accessedResource: CHEBI:33697][accessDate: 2009-11-30]
FMAID:7196
EV:0100055
SAEL:101
BioportalImporter v.1.2
BTO:0001281
James Malone
MFO:0003100
spleen
ZFA:0000436
MA:0000141
XAO:0000328
TAO:0000436
MAT:0000085
A highly vascular ductless organ that is located in the left abdominal region near the stomach or intestine of most vertebrates and is concerned with final destruction of red blood cells, filtration and storage of blood, and production of lymphocytes.[accessedResource: BTO:0001281][accessDate: 2009-11-30]
EMAPA:18767
James Malone
normal
A normal class is a special type of disease factor used as a control, that is, one which is not known to be affected by any disease; being approximately average or within certain limits; conforming with or constituting a norm or standard or level or type or social norm.
NCIt:C14165
BioportalImporter v.1.2
Being approximately average or within certain limits; conforming with or constituting a norm or standard or level or type or social norm.
[Source: NCI Thesaurus C14165]
GeneRIF:11973618
A heterogenous group of inherited muscular dystrophy without the involvement of nervous system. The disease is characterized by MUSCULAR ATROPHY; MUSCLE WEAKNESS; CONTRACTURE of the elbows; ACHILLES TENDON; and posterior cervical muscles; with or without cardiac features. There are several INHERITANCE PATTERNS including X-linked (X CHROMOSOME), autosomal dominant, and autosomal recessive gene mutations.[accessedResource: MSH:D020389][accessDate: 2009-11-30]
SNOMEDCT:129620000
James Malone
BioportalImporter v.1.2
GeneRIF:12467752
Emery-Dreifuss muscular dystrophy (disorder)[accessedResource: DOID:11726][accessDate: 2009-11-30]
Emery-Dreifuss muscular dystrophy
SNOMEDCT:111508004
GeneRIF:12755701
MSH:D020389
GeneRIF:15009215
GeneRIF:12684533
DOID:11726
James Malone
Ele Holloway
NCIH650
An assay which uses high throughput sequencing technology to determine the sequence of nucleic acids
Solexa sequencing of coding RNA
Helen Parkinson
high throughput sequencing assay
Tomasz Adamusiak
cingulate cortex
NIFSTD:birnlex_934
James Malone
cingulate cortex homogenate
NCIt:C52713
BioportalImporter v.1.2
GM07022
James Malone
cell cycle design
Tomasz Adamusiak
MO_822
James Malone
CHEBI:51953
polyamide
foetal structure
IB3-1
James Malone
DOID:4468
SNOMEDCT:189633003
GeneRIF:14633622
GeneRIF:15102668
GeneRIF:14559803
Clear cell adenocarcinoma (morphologic abnormality)[accessedResource: DOID:4468][accessDate: 2009-11-30]
A malignant neoplasm composed of glandular epithelial clear cells. Various architectural patterns may be seen, including papillary, tubulocystic, and solid.
[Source: NCI Thesaurus C3766]
GeneRIF:12086860
clear cell adenocarcinoma
BioportalImporter v.1.2
GeneRIF:12937142
GeneRIF:12970394
GeneRIF:15489654
Clear cell adenocarcinoma NOS (morphologic abnormality)[accessedResource: DOID:4468][accessDate: 2009-11-30]
Mesonephroid Clear Cell Carcinoma[accessedResource: NCIt:C3766][accessDate: 2009-11-30]
GeneRIF:15297970
An adenocarcinoma characterized by the presence of varying combinations of clear and hobnail-shaped tumor cells. There are three predominant patterns described as tubulocystic, solid, and papillary. These tumors, usually located in the female reproductive organs, have been seen more frequently in young women since 1970 as a result of the association with intrauterine exposure to diethylstilbestrol. (From Holland et al., Cancer Medicine, 3d ed)[accessedResource: MSH:D018262][accessDate: 2009-11-30]
NCIt:C3766
James Malone
MSH:D018262
GeneRIF:14729622
Mesonephroid Clear Cell Adenocarcinoma[accessedResource: NCIt:C3766][accessDate: 2009-11-30]
GeneRIF:14722919
SNOMEDCT:30546008
GeneRIF:15884099
clear cell carcinoma[accessedResource: NCIt:C3766][accessDate: 2009-11-30]
BTO:0000801
macrophage
histiocyte[accessedResource: CL:0000235][accessDate: 2009-11-30]
monocyte-derived macrophage
CL:0000235
Relatively long-lived phagocytic cell of mammalian tissues, derived from blood monocyte. Macrophages from different sites have distinctly different properties. Main types are peritoneal and alveolar macrophages, tissue macrophages (histiocytes), Kuppfer cells of the liver, and osteoclasts. In response to foreign materials may become stimulated or activated. Macrophages play an important role in killing of some bacteria, protozoa, and tumour cells, release substances that stimulate other cells of the immune system, and are involved in antigen presentation. May further differentiate within chronic inflammatory lesions to epithelioid cells or may fuse to form foreign body giant cells or Langhans' giant cells.[accessedResource: BTO:0000801][accessDate: 2009-11-30]
A mononuclear phagocyte present in variety of tissues, typically differentiated from monocytes, capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells.[accessedResource: CL:0000235][accessDate: 2009-11-30]
Tomasz Adamusiak
NIFSTD:sao185843373
James Malone
BioportalImporter v.1.2
bone marrow-derived macrophage
OBI_0400155
MO_541
James Malone
BioportalImporter v.1.2
waterbath
A water bath is a temperature control bath in which a water acts as contact medium enabling temperature transfer from the heating element or cooling element to the sample. The temperature can be controlled in the 0 to 100 degree centigrade range (under normal pressure).[accessedResource: OBI_0400155][accessDate: 2009-11-30]
James Malone
CS57580
CS57580 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158604&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158604&type=germplasm
Fatty Tissue[accessedResource: NCIt:C22703][accessDate: 2009-11-30]
BioportalImporter v.1.2
true
obsolete_adipose tissue MMHCC
James Malone
NCIt:C22703
No longer required in EFO (no supporting use case)
Adipose Tissue (MMHCC)[accessedResource: NCIt:C22703][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
A drug that affects the rate or intensity of cardiac contraction, blood vessel diameter or blood volume.[accessedResource: CHEBI:35554][accessDate: 2009-11-30]
CHEBI:35554
CHEBI:35554
cardiovascular drug
CHEBI:9753
troglitazone
5-{4-[(6-hydroxy-2,5,7,8-tetramethyl-3,4-dihydro-2H-chromen-2-yl)methoxy]benzyl}-1,3-thiazolidine-2,4-dione[accessedResource: CHEBI:9753][accessDate: 2009-11-30]
A chromane that has formula C24H27NO5S.[accessedResource: CHEBI:9753][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
MAT:0000348
apoplasm
The fluid between the cell wall and the plasma membrane[accessedResource: MAT:0000348][accessDate: 2009-11-30]
apoplast[accessedResource: MAT:0000348][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
James Malone
Tomasz Adamusiak
silicon
Ele Holloway
Jie Zheng
BioportalImporter v.1.2
MO_382
A carbon group element that has formula Si.[accessedResource: CHEBI:27573][accessDate: 2009-11-30]
CHEBI:27573
MO_772
operon identification design
Tomasz Adamusiak
James Malone
GM12751
hydrostatic pressure
James Malone
The pressure exerted by a liquid as a result of its potential energy, ignoring its kinetic energy.
RDES
James Malone
Ele Holloway
James Malone
HT-29
experiment performer
An individual who does some experimental process.
James Malone
CHEBI:6775
BioportalImporter v.1.2
mesalamine
5-amino-2-hydroxybenzoic acid[accessedResource: CHEBI:6775][accessDate: 2009-11-30]
An aromatic amine that has formula C7H7NO3.[accessedResource: CHEBI:6775][accessDate: 2009-11-30]
NCIt:C3510
Malignant Melanoma of Skin Stage Unspecified[accessedResource: NCIt:C3510][accessDate: 2009-11-30]
James Malone
SNOMEDCT:188080004
ICD9:172
ICD9:172.8
GeneRIF:12011132
Skin, Melanoma[accessedResource: NCIt:C3510][accessDate: 2009-11-30]
Melanoma of Skin[accessedResource: NCIt:C3510][accessDate: 2009-11-30]
GeneRIF:14714570
cutaneous melanoma
GeneRIF:12376526
SNOMEDCT:93655004
ICD9:172.3
GeneRIF:11841484
A primary melanoma arising from atypical melanocytes in the skin. Precursor lesions include acquired and congenital melanocytic nevi, and dysplastic nevi. Several histologic variants have been recognized, including superficial spreading melanoma, acral lentiginous melanoma, nodular melanoma, and lentigo maligna melanoma.
[Source: NCI Thesaurus C3510]
ICD9:172.9
DOID:8923
Melanoma of the Skin[accessedResource: NCIt:C3510][accessDate: 2009-11-30]
GeneRIF:12459644
BioportalImporter v.1.2
SNOMEDCT:190105009
GeneRIF:12778069
SNOMEDCT:188082007
GeneRIF:15057044
Malignant Melanoma of Skin[accessedResource: NCIt:C3510][accessDate: 2009-11-30]
GeneRIF:15751018
GeneRIF:12067203
GeneRIF:15743033
cancer of skin
Malignant Cutaneous Melanoma[accessedResource: NCIt:C3510][accessDate: 2009-11-30]
calcineurin
CHEBI:53439
Tomasz Adamusiak
Ele Holloway
An androgen that has formula C19H30O2.[accessedResource: CHEBI:16330][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
dihydrotestoterone
17beta-hydroxy-5alpha-androstan-3-one
CHEBI:16330
James Malone
GM07000
cell type comparison design
Tomasz Adamusiak
MO_764
James Malone
IMR-32
Any disease which affects part of the skeletal system.
skeletal system disease
James Malone
GeneRIF:15889157
GeneRIF:15692060
GeneRIF:14998493
GeneRIF:14654791
GeneRIF:12549480
GeneRIF:15640350
GeneRIF:15263076
GeneRIF:12082638
Malignant lymphoma NOS[accessedResource: DOID:353][accessDate: 2009-11-30]
GeneRIF:12496417
GeneRIF:14702288
GeneRIF:15744340
GeneRIF:12884297
SNOMEDCT:118600007
GeneRIF:15743832
GeneRIF:15940251
GeneRIF:15226424
GeneRIF:15133473
GeneRIF:12688322
GeneRIF:12915884
GeneRIF:15356104
GeneRIF:15668399
GeneRIF:12393693
GeneRIF:12469325
Malignant lymphoma NOS of unspecified site (disorder)[accessedResource: DOID:353][accessDate: 2009-11-30]
SNOMEDCT:188694002
GeneRIF:12145697
GeneRIF:12438221
Lymphoma (Hodgkin and Non-Hodgkin)[accessedResource: NCIt:C3208][accessDate: 2009-11-30]
GeneRIF:12555065
This is potentially too broad as well as overlaps with leukemia and should be obsoleted.
GeneRIF:15890690
GeneRIF:12217802
GeneRIF:11720250
GeneRIF:14612522
Malignant lymphoma (disorder)[accessedResource: DOID:353][accessDate: 2009-11-30]
GeneRIF:12569164
GeneRIF:11937265
GeneRIF:12539045
GeneRIF:12048235
GeneRIF:15551285
Malignant lymphoma, no ICD-O subtype (morphologic abnormality)[accessedResource: DOID:353][accessDate: 2009-11-30]
GeneRIF:12532453
GeneRIF:15735694
GeneRIF:15562971
GeneRIF:14666612
GeneRIF:11985791
GeneRIF:15265020
GeneRIF:14767575
GeneRIF:15713979
NCIt:C3208
GeneRIF:11999550
GeneRIF:12351407
Malignant lymphoma NOS (disorder)[accessedResource: DOID:353][accessDate: 2009-11-30]
GeneRIF:15467748
DOID:353
GeneRIF:15215324
SNOMEDCT:21964009
GeneRIF:15325703
GeneRIF:15677569
GeneRIF:12721791
GeneRIF:14724650
GeneRIF:12532332
GeneRIF:11932403
GeneRIF:16108830
GeneRIF:15985538
GeneRIF:11920179
GeneRIF:11751994
GeneRIF:12149433
GeneRIF:15522957
BioportalImporter v.1.2
GeneRIF:15474489
GeneRIF:12567186
GeneRIF:12218099
GeneRIF:14691303
GeneRIF:15705798
Lymphoma (Hodgkin's and Non-Hodgkin's)[accessedResource: NCIt:C3208][accessDate: 2009-11-30]
Reticulolymphosarcoma[accessedResource: DOID:353][accessDate: 2009-11-30]
GeneRIF:15126346
GeneRIF:15223017
GeneRIF:12807718
James Malone
GeneRIF:11836626
GeneRIF:11869933
SNOMEDCT:188695001
GeneRIF:16201318
GeneRIF:15649253
GeneRIF:12897143
Malignant Lymphoma[accessedResource: NCIt:C3208][accessDate: 2009-11-30]
lymphoma
GeneRIF:12208847
GeneRIF:15516976
GeneRIF:12967477
GeneRIF:12682649
GeneRIF:15902285
GeneRIF:15569983
GeneRIF:16194892
GeneRIF:15121848
GeneRIF:14662861
GeneRIF:15160902
GeneRIF:11866986
GeneRIF:15716988
GeneRIF:15762053
GeneRIF:16277027
A general term for various neoplastic diseases of the lymphoid tissue.[accessedResource: MSH:D008223][accessDate: 2009-11-30]
GeneRIF:12604405
MSH:D008223
A malignant (clonal) proliferation of B- lymphocytes or T- lymphocytes which involves the lymph nodes, bone marrow and/or extranodal sites. This category includes Non-Hodgkin lymphomas and Hodgkin lymphomas.
[Source: NCI Thesaurus C3208]
GeneRIF:12579309
Reticulolymphosarcoma NOS[accessedResource: DOID:353][accessDate: 2009-11-30]
SUM1315MO2
James Malone
SNOMEDCT:254915003
clear cell renal carcinoma
Renal Clear Cell Adenocarcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
GeneRIF:15709172
Grawitz Tumor[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Renal Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear cell carcinoma of kidney[accessedResource: DOID:4467][accessDate: 2009-11-30]
DOID:4467
Conventional (Clear Cell) Renal Cell Adenocarcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear cell carcinoma of kidney (disorder)[accessedResource: DOID:4467][accessDate: 2009-11-30]
A heterogeneous group of sporadic or hereditary carcinoma derived from cells of the KIDNEYS. There are several subtypes including the clear cells, the papillary, the chromophobe, the collecting duct, the spindle cells (sarcomatoid), or mixed cell-type carcinoma.[accessedResource: MSH:D002292][accessDate: 2009-11-30]
Clear Cell Adenocarcinoma, Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Clear Cell Carcinoma of the Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
James Malone
GeneRIF:15062033
Kidney Clear Cell Carcinoma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
Hypernephroma[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
A malignant epithelial neoplasm of the kidney characterized by the presence of lipid-containing clear cells within a vascular network. The tumor may metastasize to unusual sites and late metastasis is common.[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C4033
Clear Cell Adenocarcinoma of the Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
MSH:D002292
Clear cell carcinoma of kidney is a renal cell carcinoma described as the most common type of renal cell carcinoma. The cancerous cells appear very pale or clear when examined under microscope. This cancer can be effectively treated with surgery if the tumor is confined to the kidney.[accessedResource: DOID:4467][accessDate: 2009-11-30]
GeneRIF:14550470
Conventional (Clear cell) Renal cell Carcinoma[accessedResource: DOID:4467][accessDate: 2009-11-30]
Conventional Renal cell Carcinoma[accessedResource: DOID:4467][accessDate: 2009-11-30]
GeneRIF:12576453
Clear Cell Adenocarcinoma of Kidney[accessedResource: NCIt:C4033][accessDate: 2009-11-30]
bulbus arteriosus
Adipose Tissue - Brown (MMHCC)[accessedResource: NCIt:C22704][accessDate: 2009-11-30]
obsolete_adipose tissue brown MMHCC
Brown Adipose Tissue[accessedResource: NCIt:C22704][accessDate: 2009-11-30]
Brown Fat[accessedResource: NCIt:C22704][accessDate: 2009-11-30]
BioportalImporter v.1.2
true
Use brown fat EFO_0000812 instead
NCIt:C22704
environmental factor
The external elements and conditions which surround, influence, and affect the life and development of an organism or population.
true
This should become a material entity with the role of environment
James Malone
environment factor
A compound or agent that combines with cyclooxygenases and thereby prevents its substrate-enzyme combination with arachidonic acid and the formation of eicosanoids, prostaglandins, and thromboxanes.[accessedResource: CHEBI:35544][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
CHEBI:35544
cyclooxygenase inhibitor
CHEBI:35544
BioportalImporter v.1.2
trifluoperazine
CHEBI:45951
10-[3-(4-methylpiperazin-1-yl)propyl]-2-(trifluoromethyl)-10H-phenothiazine[accessedResource: CHEBI:45951][accessDate: 2009-11-30]
A phenothiazine that has formula C21H24F3N3S.[accessedResource: CHEBI:45951][accessDate: 2009-11-30]
James Malone
James Malone
BioportalImporter v.1.2
nectar
MAT:0000349
BTO:0000537
A sweet liquid that is secreted by the nectaries of a plant and is the chief raw material of honey.[accessedResource: BTO:0000537][accessDate: 2009-11-30]
GM12760
James Malone
Tomasz Adamusiak
Ele Holloway
CHEBI:53448
methyl cellulose
duplicate class. deprecated in favour of thiopurines and created as a synonym
CHEBI:35666
1.8
obsolete_mercaptopurines
true
James Malone
Ele Holloway
REC1
GeneRIF:14514642
SNOMEDCT:315299009
GeneRIF:12196481
GeneRIF:12149242
Hyperglycemia (context-dependent category)[accessedResource: DOID:4195][accessDate: 2009-11-30]
GeneRIF:15561954
GeneRIF:15845625
GeneRIF:14984315
GeneRIF:14578285
GeneRIF:14749287
GeneRIF:12963802
GeneRIF:12759458
GeneRIF:12376320
GeneRIF:15855318
GeneRIF:11959624
GeneRIF:12645629
GeneRIF:12453975
GeneRIF:15259033
GeneRIF:15985479
GeneRIF:15486815
GeneRIF:15868137
GeneRIF:15662550
GeneRIF:12107734
DOID:4195
GeneRIF:12464674
GeneRIF:12522068
GeneRIF:15899886
GeneRIF:14534319
GeneRIF:15561908
GeneRIF:12137596
GeneRIF:12736712
GeneRIF:15993383
GeneRIF:15277392
GeneRIF:15899957
GeneRIF:14678947
GeneRIF:12655575
BioportalImporter v.1.2
GeneRIF:15148392
James Malone
SNOMEDCT:80394007
GeneRIF:12765965
Hyperglycemia (disorder)[accessedResource: DOID:4195][accessDate: 2009-11-30]
GeneRIF:15920055
GeneRIF:15501243
GeneRIF:14673082
hyperglycemia
GeneRIF:15616014
GeneRIF:16301823
GeneRIF:15677479
GeneRIF:15033467
GeneRIF:15191885
GeneRIF:12819007
Abnormally high BLOOD GLUCOSE level.[accessedResource: MSH:D006943][accessDate: 2009-11-30]
GeneRIF:12482638
Hyperglycaemia[accessedResource: DOID:4195][accessDate: 2009-11-30]
GeneRIF:15848159
MSH:D006943
GeneRIF:14751239
GeneRIF:15010337
GeneRIF:15956778
GeneRIF:14698990
GeneRIF:12860835
James Malone
Formerly class "current milliamperes"
The measure of movement of electrical charges in a conductor measured in milliamperes.
electrical current
Tomasz Adamusiak
genotyping design
MO_560
period of infection
James Malone
CL:0000542
BTO:0000775
James Malone
BioportalImporter v.1.2
lymphocyte
Any of the colorless weakly motile cells originating from stem cells and differentiating in lymphoid tissue (as of the thymus or bone marrow) that are the typical cellular elements of lymph, include the cellular mediators of immunity, and constitute 20 to 30 percent of the white blood cells of normal human blood.[accessedResource: BTO:0000775][accessDate: 2009-11-30]
A cell of the B cell, T cell, or natural killer cell lineage.[accessedResource: CL:0000542][accessDate: 2009-11-30]
James Malone
Ele Holloway
HCT15
hypertrophy
Hypertrophy is the increase in the volume of an organ or tissue due to the enlargement of its component cells.
James Malone
adenosquamous lung carcinoma
NCIt:C9133
DOID:4829
Adenosquamous Cell Lung Carcinoma[accessedResource: NCIt:C9133][accessDate: 2009-11-30]
An aggressive carcinoma with a poor prognosis characterized by a presence of both malignant squamous cells and glandular cells.
[Source: NCI Thesaurus C9133]
James Malone
BioportalImporter v.1.2
An information entity about the status of a publication describing the experiment.
publication status
Tomasz Adamusiak
BioportalImporter v.1.2
true
Classical Hodgkin Lymphoma[accessedResource: C7164][accessDate: 2009-11-30]
1.5
cHL[accessedResource: C7164][accessDate: 2009-11-30]
obsolete_classical Hodgkin's lymphoma
Duplicate with Hodgkin's lymphoma (EFO_0000183)
Classical Hodgkin's Lymphoma[accessedResource: C7164][accessDate: 2009-11-30]
James Malone
A monoclonal B-cell lymphoproliferation in the vast majority of cases. It is characterized by a bimodal age distribution (15-30 years of life and late life) and is often associated with EBV infection. In less than 5% of cases it is a monoclonal proliferation of T-lymphocytes. Morphologically, it is characterized by the presence of Reed-Sternberg cells and mononuclear Hodgkin cells. The Reed-Sternberg and mononuclear Hodgkin cells are CD30 positive in nearly all cases and CD15 positive in the majority of cases.[accessedResource: C7164][accessDate: 2009-11-30]
C7164
CS57583
CS57583 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158607&type=germplasm
http://www.arabidopsis.org/servlets/TairObject?id=1005158607&type=germplasm
James Malone
The external elements and conditions which surround, influence, and affect the life and development of an organism or population.
obsolete_environment
Synonym of environmental factor
James Malone
true
fibrosarcoma
OntologyMappingImporter following MAT:0000365
James Malone
wood parenchyma
PO:0004525
MAT:0000365
NCIt:C32141
BTO:0001435
James Malone
BioportalImporter v.1.2
The portion of the upper extremity between the shoulder and the elbow. For clinical purposes this term is also used to refer to the whole superior limb.
[Source: NCI Thesaurus C32141]
A human upper limb; especially: the part between the shoulder and the wrist.[accessedResource: BTO:0001435][accessDate: 2009-11-30]
arm
benign neoplasm
Tomasz Adamusiak
James Malone
benign tumor
James Malone
BioportalImporter v.1.2
CHEBI:35526
CHEBI:35526
hypoglycemic drug
A drug which lowers the blood glucose level.[accessedResource: CHEBI:35526][accessDate: 2009-11-30]
Tomasz Adamusiak
Jie Zheng
James Malone
cultivar
MO_124
A cultivated plant variety selected and given a name because it has desirable characteristics that distinguish it from otherwise similar plants of the same species.
MO_553
RNA stability design
Tomasz Adamusiak
true
obsolete_percent oxygen
James Malone
Ele Holloway
HuT78
CHEBI:46024
(2E,4E,6R)-7-[4-(dimethylamino)phenyl]-N-hydroxy-4,6-dimethyl-7-oxohepta-2,4-dienamide[accessedResource: CHEBI:46024][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
A trichostatin that has formula C17H22N2O3.[accessedResource: CHEBI:46024][accessDate: 2009-11-30]
trichostatin A
Caki1
James Malone
Ele Holloway
James Malone
HMT3522S1
Tomasz Adamusiak
Jie Zheng
James Malone
MO_101
An animal or plant or part thereof that nourishes and supports a parasite either in a lab or natural environment.
host
RCHACV
James Malone
Ele Holloway
Tomasz Adamusiak
Ele Holloway
N-(1-naphthyl)ethylenediamine dihydrochloride
CHEBI:53452
lymphoblast
James Malone
BioportalImporter v.1.2
Often referred to as a blast cell. Unlike other usages of the suffix -blast a lymphoblast is a further differentiation of a lymphocyte, T- or B-, occasioned by an antigenic stimulus. The lymphoblast usually develops by enlargement of a lymphocyte, active re-entry to the S phase of the cell cycle, mitogenesis and production of much m-RNA and ribosomes.[accessedResource: BTO:0000772][accessDate: 2009-11-30]
An immature lymphocyte that has enlarged in response to antigenic stimulation.[accessedResource: NCIt:C13013][accessDate: 2009-11-30]
NCIt:C13013
BTO:0000772
fibroblast derived cell line
James Malone
Ele Holloway
HCT8
MO_1019
Tomasz Adamusiak
cell component comparison design
James Malone
SKGT4
classifier prediction
James Malone
An extrapolation into the future of data into a class with specified label.
NCIt:C12472
Body Fat[accessedResource: NCIt:C12472][accessDate: 2009-11-30]
adipose tissue
A specialized form of connective tissue consisting primarily of adipocytes (fat cells), surrounded by a meshwork of collagen fibers.[accessedResource: NCIt:C12472][accessDate: 2009-11-30]
BTO:0001487
James Malone
Connective tissue in which fat is stored and which has the cells distended by droplets of fat.[accessedResource: BTO:0001487][accessDate: 2009-11-30]
BioportalImporter v.1.2
adipose[accessedResource: NCIt:C12472][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
OBI_0400107
MO_510
A computer is an instrument which manipulates (stores, retrieves, and processes) data according to a list of instructions.[accessedResource: OBI_0400107][accessDate: 2009-11-30]
computer
CL:0000115
James Malone
primary lymphatic endothelial cell
lymphatic endothelial cell
BioportalImporter v.1.2
endothelial cell
BTO:0001176
The main type of cell found in the inside lining of blood vessels, lymph vessels, and the heart.[accessedResource: BTO:0001176][accessDate: 2009-11-30]
James Malone
Ele Holloway
NCIH1092
James Malone
http://www.arabidopsis.org/servlets/TairObject?id=1005158605&type=germplasm
CS57581
CS57581 is an Arabidopsis thaliana strain as described in TAIR http://www.arabidopsis.org/servlets/TairObject?id=1005158605&type=germplasm
CHEBI:35522
ß-adrenergic agonist
CHEBI:35522
An agent that selectively binds to and activates beta-adrenergic receptors.[accessedResource: CHEBI:35522][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
James Malone
FBbt:00005463
crystal cell specific anlage
MAT:0000364
James Malone
phloem
BTO:0001058
A complex tissue in the vascular system of higher plants that consists mainly of sieve tubes and elongated parenchyma cells usually with fibers and that functions in translocation and in support and storage.[accessedResource: BTO:0001058][accessDate: 2009-11-30]
PO:0005417
BioportalImporter v.1.2
22-oxovincaleukoblastine[accessedResource: CHEBI:28445][accessDate: 2009-11-30]
A vinca alkaloid that has formula C46H56N4O10.[accessedResource: CHEBI:28445][accessDate: 2009-11-30]
vincristine
James Malone
Ele Holloway
BioportalImporter v.1.2
CHEBI:28445
MO_544
family history design
Tomasz Adamusiak
obsolete_percent oxygen concentration
true
James Malone
HS578T
neuropeptide S
CHEBI:53461
Tomasz Adamusiak
Ele Holloway
RD
James Malone
Ele Holloway
GeneRIF:15476444
GeneRIF:16115812
GeneRIF:12706247
GeneRIF:15644269
GeneRIF:12008025
GeneRIF:12614934
GeneRIF:16054230
NIFSTD:birnlex_12500
GeneRIF:12657678
GeneRIF:12691731
GeneRIF:14981075
GeneRIF:12890790
Huntington disease[accessedResource: DOID:12858][accessDate: 2009-11-30]
GeneRIF:14522959
GeneRIF:12915485
GeneRIF:15359012
GeneRIF:15383276
BioportalImporter v.1.2
GeneRIF:11817536
GeneRIF:15922606
Huntington's disease Pathway[accessedResource: DOID:12858][accessDate: 2009-11-30]
GeneRIF:14985389
GeneRIF:12952868
GeneRIF:15934928
GeneRIF:15878807
GeneRIF:15715085
GeneRIF:15057517
GeneRIF:11432963
Huntington's disease
Huntington's chorea[accessedResource: DOID:12858][accessDate: 2009-11-30]
Tomasz Adamusiak
GeneRIF:11914418
A familial disorder inherited as an autosomal dominant trait and characterized by the onset of progressive CHOREA and DEMENTIA in the fourth or fifth decade of life. Common initial manifestations include paranoia; poor impulse control; DEPRESSION; HALLUCINATIONS; and DELUSIONS. Eventually intellectual impairment; loss of fine motor control; ATHETOSIS; and diffuse chorea involving axial and limb musculature develops, leading to a vegetative state within 10-15 years of disease onset. The juvenile variant has a more fulminant course including SEIZURES; ATAXIA; dementia; and chorea. (From Adams et al., Principles of Neurology, 6th ed, pp1060-4)[accessedResource: MSH:D006816][accessDate: 2009-11-30]
GeneRIF:12736330
GeneRIF:12078510
GeneRIF:12969257
GeneRIF:11813242
MSH:D006816
GeneRIF:15817265
HD[accessedResource: DOID:12858][accessDate: 2009-11-30]
SNOMEDCT:58756001
GeneRIF:16184606
GeneRIF:15033177
GeneRIF:11593450
GeneRIF:15843398
GeneRIF:15880743
GeneRIF:12682342
GeneRIF:12960759
GeneRIF:15167689
ICD9:333.4
GeneRIF:15845076
GeneRIF:15496672
GeneRIF:14511117
GeneRIF:14725621
DOID:12858
GeneRIF:14751289
GeneRIF:15742215
GeneRIF:12604778
GeneRIF:15009635
GeneRIF:12531510
GeneRIF:12950446
GeneRIF:12528814
GeneRIF:15029481
James Malone
Huntington's chorea (disorder)[accessedResource: DOID:12858][accessDate: 2009-11-30]
GeneRIF:12781994
GeneRIF:14978262
GeneRIF:15261377
GeneRIF:15749339
GeneRIF:15337316
James Malone
Ele Holloway
CaOv3
Tomasz Adamusiak
software manufacturer
MO_475
SKBR3
James Malone
Tomasz Adamusiak
James Malone
MO_683
protein
PRO:000000001
A protein is an (also known as polypeptides) organic compound made of amino acids arranged in a linear chain and folded into a globular form.
Jie Zheng
polypeptide
L3055
James Malone
BioportalImporter v.1.2
James Malone
FMA:61906
middle temporal gyrus
Ele Holloway
Intermediate temporal gyrus[accessedResource: FMA:61906][accessDate: 2009-11-30]
GeneRIF:15943036
Cylindroma (morphologic abnormality)[accessedResource: DOID:4866][accessDate: 2009-11-30]
Adenocystic Carcinoma[accessedResource: NCIt:C2970][accessDate: 2009-11-30]
SNOMEDCT:11671000
NCIt:C2970
adenoid cystic carcinoma
Cylindroid Adenocarcinoma[accessedResource: NCIt:C2970][accessDate: 2009-11-30]
DOID:4866
MSH:D003528
Carcinoma characterized by bands or cylinders of hyalinized or mucinous stroma separating or surrounded by nests or cords of small epithelial cells. When the cylinders occur within masses of epithelial cells, they give the tissue a perforated, sievelike, or cribriform appearance. Such tumors occur in the mammary glands, the mucous glands of the upper and lower respiratory tract, and the salivary glands. They are malignant but slow-growing, and tend to spread locally via the nerves. (Dorland, 27th ed)[accessedResource: MSH:D003528][accessDate: 2009-11-30]
GeneRIF:12452045
BioportalImporter v.1.2
GeneRIF:15370139
A malignant tumor arising from the epithelial cells. Microscopically, the neoplastic epithelial cells form cylindrical spatial configurations (cribriform or classic type of adenoid cystic carcinoma), cordlike structures (tubular type of adenoid cystic carcinoma), or solid structures (basaloid variant of adenoid cystic carcinoma). Adenoid cystic carcinomas mostly occur in the salivary glands. Other primary sites of involvement include the lacrimal gland, the larynx, and the lungs. Adenoid cystic carcinomas spread along nerve sheaths, resulting in severe pain, and they tend to recur. Lymph node metastases are unusual; hematogenous tumor spread is characteristic.
[Source: NCI Thesaurus C2970]
James Malone
Cylindroma NOS[accessedResource: DOID:4866][accessDate: 2009-11-30]
Adenoid cystic carcinoma (morphologic abnormality)[accessedResource: DOID:4866][accessDate: 2009-11-30]
GeneRIF:15529180
adenoid cystic cancer[accessedResource: DOID:4866][accessDate: 2009-11-30]
GeneRIF:11780226
GeneRIF:12624503
GeneRIF:15292943
HCC1599
James Malone
Ele Holloway
SNOMEDCT:373627005
Bronchiolo-Alveolar Lung Carcinoma[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
bronchiolo-alveolar adenocarcinoma,[accessedResource: DOID:4926][accessDate: 2009-11-30]
Bronchioloalveolar Carcinoma[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
Bronchioloalveolar Adenocarcinoma of the Lung[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
Bronchioalveolar Adenocarcinoma of the Lung[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
DOID:4926
bronchoalveolar adenocarcinoma
Alveolar adenocarcinoma (morphologic abnormality)[accessedResource: DOID:4926][accessDate: 2009-11-30]
Bronchioloalveolar adenocarcinoma[accessedResource: DOID:4926][accessDate: 2009-11-30]
SNOMEDCT:36310008
Bronchiolo-alveolar adenocarcinoma (morphologic abnormality)[accessedResource: DOID:4926][accessDate: 2009-11-30]
MSH:D002282
Bronchioloalveolar Adenocarcinoma of Lung[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
Bronchioloalveolar Lung Adenocarcinoma[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
Bronchioalveolar Adenocarcinoma of Lung[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
Bronchiolo-Alveolar Carcinoma of Lung[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
BioportalImporter v.1.2
A well or moderately differentiated morphologic variant of lung adenocarcinoma characterized by tumor growth along the alveolar structures without stromal, vascular, or pleural invasion.
[Source: NCI Thesaurus C2923]
NCIt:C2923
Bronchioloalveolar carcinoma (disorder)[accessedResource: DOID:4926][accessDate: 2009-11-30]
BAC[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
SNOMEDCT:112677002
James Malone
A carcinoma thought to be derived from epithelium of terminal bronchioles, in which the neoplastic tissue extends along the alveolar walls and grows in small masses within the alveoli. Involvement may be uniformly diffuse and massive, or nodular, or lobular. The neoplastic cells are cuboidal or columnar and form papillary structures. Mucin may be demonstrated in some of the cells and in the material in the alveoli, which also includes denuded cells. Metastases in regional lymph nodes, and in even more distant sites, are known to occur, but are infrequent. (From Stedman, 25th ed)[accessedResource: MSH:D002282][accessDate: 2009-11-30]
Bronchiolo-Alveolar Carcinoma of the Lung[accessedResource: NCIt:C2923][accessDate: 2009-11-30]
Bronchioalveolar Lung Carcinoma[accessedResource: DOID:4926][accessDate: 2009-11-30]
GeneRIF:12918063
GeneRIF:11836605
GeneRIF:12374671
GeneRIF:14634100
GeneRIF:12923324
GeneRIF:12687616
GeneRIF:15815931
GeneRIF:15709189
GeneRIF:16109772
GeneRIF:12883699
GeneRIF:12114441
GeneRIF:14996858
GeneRIF:11957142
GeneRIF:15819721
GeneRIF:12503077
GeneRIF:15688187
GeneRIF:11891209
GeneRIF:14633739
GeneRIF:15660698
James Malone
GeneRIF:12414512
GeneRIF:12579497
DOID:3910
GeneRIF:12163326
GeneRIF:11801602
GeneRIF:15197584
Adenocarcinoma of Lung[accessedResource: NCIt:C3512][accessDate: 2009-11-30]
GeneRIF:12698189
GeneRIF:12164330
GeneRIF:16232198
GeneRIF:12420220
GeneRIF:12942568
Adenocarcinoma of lung (disorder)[accessedResource: DOID:3910][accessDate: 2009-11-30]
Adenocarcinoma of the Lung[accessedResource: NCIt:C3512][accessDate: 2009-11-30]
GeneRIF:14735190
GeneRIF:12824892
GeneRIF:15944787
GeneRIF:16184720
GeneRIF:15809747
GeneRIF:16116610
NCIt:C3512
GeneRIF:8564085
GeneRIF:15976377
GeneRIF:14607333
GeneRIF:15943786
GeneRIF:15216431
GeneRIF:12234996
GeneRIF:14511407
GeneRIF:12152160
SNOMEDCT:254626006
lung adenocarcinoma
GeneRIF:16061866
GeneRIF:12644570
BioportalImporter v.1.2
A carcinoma characterized by the presence of malignant glandular epithelial cells. There is a male predilection with a male to female ratio of 2:1. Usually lung adenocarcinoma is asymptomatic and is identified through screening studies or as an incidental radiologic finding. If clinical symptoms are present they include shortness of breath, cough, hemoptysis, chest pain, and fever. Tobacco smoke is a known risk factor.[accessedResource: NCIt:C3512][accessDate: 2009-11-30]
GeneRIF:14744769
GeneRIF:16108829
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
rubriblast[accessedResource: CL:0000547][accessDate: 2009-11-30]
CL:0000547
An immature, nucleated erythrocyte occupying the stage of erythropoeisis that follows formation of erythroid progenitor cells.[accessedResource: CL:0000547][accessDate: 2009-11-30]
proerythroblast
fibroma
Tomasz Adamusiak
1.8
MO_902
true
obsolete_disease state design
duplication with EFO_0001756
corm
James Malone
BioportalImporter v.1.2
MAT:0000368
BTO:0000285
A rounded thick modified underground stem base bearing membranous or scaly leaves and buds and acting as a vegetative reproductive structure.[accessedResource: BTO:0000285][accessDate: 2009-11-30]
BioportalImporter v.1.2
estradiol
methylmercury
Tomasz Adamusiak
Ele Holloway
CHEBI:49747
NCIH1395
James Malone
Ele Holloway
Vitamin D3
CHEBI:27300
James Malone
Ele Holloway
P3HR1
A curved elongated ridge that extends over the floor of the descending horn of each lateral ventricle of the brain and consists of gray matter covered on the ventricular surface with white matter;nThe hippocampus is a part of the temporal lobe, which has a well established role in learning, memory and emotion.[accessedResource: BTO:0000601][accessDate: 2009-11-30]
EMAPA:19148
CNS - Brain - Hippocampus (MMHCC)[accessedResource: NCIt:C22615][accessDate: 2009-11-30]
Hippocampus major[accessedResource: FMAID:62493][accessDate: 2009-11-30]
FMAID:62493
NIFSTD:birnlex_721
MAT:0000114
hippocampus
Hippocampus proper[accessedResource: FMAID:62493][accessDate: 2009-11-30]
BioportalImporter v.1.2
NCIt:C22615
James Malone
SAEL:51
Tomasz Adamusiak
EV:0100180
NIFSTD:birnlex_726
BTO:0000601
Ammon's horn[accessedResource: FMAID:62493][accessDate: 2009-11-30]
MA:0000191
CaHPV10
James Malone
Ele Holloway
A tetracycline that has formula C22H24N2O8.[accessedResource: CHEBI:50845][accessDate: 2009-11-30]
BioportalImporter v.1.2
(4S,4aR,5S,5aR,6R,12aS)-4-(dimethylamino)-3,5,10,12,12a-pentahydroxy-6-methyl-1,11-dioxo-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide[accessedResource: CHEBI:50845][accessDate: 2009-11-30]
doxycycline
CHEBI:50845
BioportalImporter v.1.2
James Malone
EMAPA:17174
BTO:0000717
ZFA:0000054
EV:0100023
FMAID:9869
EHDAA:5376
MAT:0000454
pericardium
1: The conical sac of serous membrane that encloses the heart and the roots of the great blood vessels of vertebrates.n2: A cavity or space that contains the heart of an invertebrate and in arthropods is a part of the hemocoel.[accessedResource: BTO:0000717][accessDate: 2009-11-30]
Organ cluster which has as its parts the fibrous pericardium and the pericardial sac.[accessedResource: FMAID:9869][accessDate: 2009-11-30]
pericardial sac[accessedResource: MAT:0000454][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
A drug used to prevent seizures or reduce their severity.[accessedResource: CHEBI:35623][accessDate: 2009-11-30]
CHEBI:35623
anticonvulsant
CHEBI:35623
James Malone
Ele Holloway
HCC2218
MO_882
submitter
Tomasz Adamusiak
MA:0001067
inferior colliculus
James Malone
Ele Holloway
true
MSH:D018275
Lobular carcinoma (morphologic abnormality)[accessedResource: DOID:3457][accessDate: 2009-11-30]
Lobular Carcinoma of the Breast[accessedResource: DOID:3457][accessDate: 2009-11-30]
SNOMEDCT:89740008
GeneRIF:12661036
SNOMEDCT:189713007
GeneRIF:12907138
SNOMEDCT:278054005
James Malone
Lobular carcinoma NOS (morphologic abnormality)[accessedResource: DOID:3457][accessDate: 2009-11-30]
BioportalImporter v.1.2
Lobular Breast Carcinoma[accessedResource: NCIt:C3771][accessDate: 2009-11-30]
Carcinoma, Lobular[accessedResource: DOID:3457][accessDate: 2009-11-30]
Lobular Adenocarcinoma[accessedResource: NCIt:C3771][accessDate: 2009-11-30]
DOID:3457
1.5
Lobular Carcinoma of Breast[accessedResource: NCIt:C3771][accessDate: 2009-11-30]
An adenocarcinoma of the breast arising from the lobules. This is a relatively uncommon carcinoma, represents approximately 10% of the breast adenocarcinomas and is often bilateral or multifocal.[accessedResource: NCIt:C3771][accessDate: 2009-11-30]
obsolete_lobular breast carcinoma
Duplicate with invasive lobular carcinoma (EFO_0000553)
A infiltrating (invasive) breast cancer, relatively uncommon, accounting for only 5%-10% of breast tumors in most series. It is often an area of ill-defined thickening in the breast, in contrast to the dominant lump characteristic of ductal carcinoma. It is typically composed of small cells in a linear arrangement with a tendency to grow around ducts and lobules. There is likelihood of axillary nodal involvement with metastasis to meningeal and serosal surfaces. (DeVita Jr et al., Cancer: Principles & Practice of Oncology, 3d ed, p1205)[accessedResource: MSH:D018275][accessDate: 2009-11-30]
GeneRIF:15695379
NCIt:C3771
Lobular carcinoma of breast (disorder)[accessedResource: DOID:3457][accessDate: 2009-11-30]
GeneRIF:15803365
James Malone
LY2
NCIt:C2855
adenoma
A neoplasm arising from the epithelium. It may be encapsulated or non-encapsulated but non-invasive. The neoplastic epithelial cells may or may not display cellular atypia or dysplasia. In the gastrointestinal tract, when dysplasia becomes severe it is sometimes called carcinoma in situ. Representative examples are pituitary gland adenoma, follicular adenoma of the thyroid gland, and adenomas (or adenomatous polyps) of the gastrointestinal tract.
James Malone
BioportalImporter v.1.2
James Malone
GeneRIF:15728515
GeneRIF:12604406
Malignant lymphoma, Burkitt's type[accessedResource: DOID:8584][accessDate: 2009-11-30]
GeneRIF:16169462
Burkitt's tumour [obs][accessedResource: DOID:8584][accessDate: 2009-11-30]
Burkitt's tumor NOS (morphologic abnormality)[accessedResource: DOID:8584][accessDate: 2009-11-30]
Burkitt's tumors (morphologic abnormality)[accessedResource: DOID:8584][accessDate: 2009-11-30]
GeneRIF:15520469
DOID:8584
GeneRIF:14697225
ICD9:200.2
GeneRIF:15498855
GeneRIF:14707079
GeneRIF:12410315
GeneRIF:11964311
Burkitt's tumor[accessedResource: DOID:8584][accessDate: 2009-11-30]
Burkitt lymphoma/leukaemia[accessedResource: DOID:8584][accessDate: 2009-11-30]
GeneRIF:12672960
GeneRIF:15940251
A form of undifferentiated malignant LYMPHOMA usually found in central Africa, but also reported in other parts of the world. It is commonly manifested as a large osteolytic lesion in the jaw or as an abdominal mass. B-cell antigens are expressed on the immature cells that make up the tumor in virtually all cases of Burkitt lymphoma. The Epstein-Barr virus (HERPESVIRUS 4, HUMAN) has been isolated from Burkitt lymphoma cases in Africa and it is implicated as the causative agent in these cases; however, most non-African cases are EBV-negative.[accessedResource: MSH:D002051][accessDate: 2009-11-30]
GeneRIF:11783945
GeneRIF:15061213
Burkitt's tumor or lymphoma[accessedResource: DOID:8584][accessDate: 2009-11-30]
GeneRIF:15384174
Burkitt's lymphoma of unspecified site (disorder)[accessedResource: DOID:8584][accessDate: 2009-11-30]
GeneRIF:12594826
GeneRIF:12808131
Burkitt's lymphoma - disorder[accessedResource: DOID:8584][accessDate: 2009-11-30]
Small Non-Cleaved cell Lymphoma, Burkitt's Type[accessedResource: DOID:8584][accessDate: 2009-11-30]
MSH:D002051
Burkitt Lymphoma[accessedResource: DOID:8584][accessDate: 2009-11-30]
BioportalImporter v.1.2
Burkitt's lymphoma
GeneRIF:11869962
GeneRIF:11443860
GeneRIF:14980076
Burkitt's lymphoma NOS (disorder)[accessedResource: DOID:8584][accessDate: 2009-11-30]
GeneRIF:12070030
James Malone
Ele Holloway
PLB985
histology
morphology
Microscopic morphology of tissues.
James Malone
clinical history design
Tomasz Adamusiak
MO_832
http://en.wikipedia.org/wiki/Pancreas
Tomasz Adamusiak
Jie Zheng
progenitor cell of endocrine pancreas
Tomasz Adamusiak
James Malone
osteoma
N-methyl-D-aspartic acid
Tomasz Adamusiak
Ele Holloway
CHEBI:31882
James Malone
Ele Holloway
NCIH1355
CROAP5
James Malone
Ele Holloway
CHEBI:27698
Vanadium
A vanadium group element that has formula V.[accessedResource: CHEBI:27698][accessDate: 2009-11-30]
James Malone
BioportalImporter v.1.2
A fat body is an insect gland dorsal to the insect gut, with a function analogous to that of the vertebrate liver. It is a storage organ for fats, glycogen and protein and is a major site of intermediary metabolism.[accessedResource: TGMA:0001856][accessDate: 2009-11-30]
BioportalImporter v.1.2
An invertebrate tissue which serves as a store of lipids and in nwhich a great deal of catabolic and anabolic activity occurs[accessedResource: MAT:0000096][accessDate: 2009-11-30]
TGMA:0001856
TADS:0000321
MAT:0000096
fat body sensu invertebrata
FBbt:00005066
James Malone
.[accessedResource: FBbt:00005066][accessDate: 2009-11-30]
vasodilator agent
James Malone
BioportalImporter v.1.2
CHEBI:35620
CHEBI:35620
A drug used to cause dilation of the blood vessels.[accessedResource: CHEBI:35620][accessDate: 2009-11-30]
BioportalImporter v.1.2
ZFA:0001320
FMAID:7280
endocardium
James Malone
MA:0000076
MAT:0000455
EMAPA:17868
BTO:0000387
Tunica intima which has as its parts the endothelium of endocardium and the fibroelastic connective tissue that surrounds the cavity of a cardiac chamber.[accessedResource: FMAID:7280][accessDate: 2009-11-30]
TAO:0001320
A thin serous membrane lining the cavities of the heart.[accessedResource: BTO:0000387][accessDate: 2009-11-30]
EV:0100021
James Malone
IMR-90
H4
James Malone
Ele Holloway
SchneiderSL2
James Malone
S49
GeneRIF:12370398
SNOMEDCT:196365008
NCIt:C34918
ICD9:523.4
GeneRIF:15974847
GeneRIF:16018746
chronic pericementitis (disorder)[accessedResource: DOID:824][accessDate: 2009-11-30]
GeneRIF:12759451
GeneRIF:15312099
chronic periodontitis (disorder)[accessedResource: DOID:824][accessDate: 2009-11-30]
GeneRIF:12469211
GeneRIF:15025215
BioportalImporter v.1.2
GeneRIF:12595898
GeneRIF:16208406
Periodontitis (disorder)[accessedResource: DOID:824][accessDate: 2009-11-30]
GeneRIF:15491310
James Malone
MSH:D010518
GeneRIF:12795790
DOID:824
GeneRIF:12834496
SNOMEDCT:5689008
GeneRIF:14734770
periodontitis
chronic periodontitis NOS (disorder)[accessedResource: DOID:824][accessDate: 2009-11-30]
SNOMEDCT:196369002
GeneRIF:16052575
GeneRIF:12747454
GeneRIF:11846846
Inflammation and loss of connective tissues supporting or surrounding the teeth. This may involve any part of the PERIODONTIUM. Periodontitis is currently classified by disease progression (CHRONIC PERIODONTITIS; AGGRESSIVE PERIODONTITIS) instead of age of onset. (From 1999 International Workshop for a Classification of Periodontal Diseases and Conditions, American Academy of Periodontology)[accessedResource: MSH:D010518][accessDate: 2009-11-30]
SNOMEDCT:41565005
GeneRIF:15279649
chronic pericementitis[accessedResource: DOID:824][accessDate: 2009-11-30]
NCIt:C35326
Chronic Periodontitis[accessedResource: NCIt:C35326][accessDate: 2009-11-30]
GeneRIF:15845467
MA:0000154
EV:0100156
hair follicle
James Malone
Ele Holloway
Tomasz Adamusiak
James Malone
neoplasm of mature T-cells or NK-cells
peripheral T-cell or NK-cell neoplasm
CHEBI:7438
Tomasz Adamusiak
Ele Holloway
N-methylformamide
James Malone
Ele Holloway
GDM1
alpha cell
CL:0000171
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
pancreatic alpha cell[accessedResource: CL:0000171][accessDate: 2009-11-30]
pancreatic A cell[accessedResource: CL:0000171][accessDate: 2009-11-30]
breast tumor luminal
James Malone
CROAP2
James Malone
Ele Holloway
OE33
James Malone
Ele Holloway
MAT:0000350
James Malone
sap
James Malone
BioportalImporter v.1.2
2-propylpentanoic acid[accessedResource: CHEBI:39867][accessDate: 2009-11-30]
CHEBI:39867
valproic acid
James Malone
Ele Holloway
NCIH1155
Kin-S49
James Malone
Tomasz Adamusiak
James Malone
geniculate nucleus
SNOMEDCT:279108008
BTO:0001677
James Malone
SL2
Schneider
S2
Insect - fruitfly (Drosophila melanogaster) cell line, established from the late embryo of a Drosophila melanogaster (fruitfly) in 1972; originally the cells were diploid with 5-10% XY, currently the cell line has only XX cells that are now 60-80% tetraploid.[accessedResource: BTO:0001677][accessDate: 2009-11-30]
BioportalImporter v.1.2
James Malone
BTO:0000040
adenohypophysis
ZFA:0001282
The anterior glandular lobe of the pituitary gland.[accessedResource: BTO:0000040][accessDate: 2009-11-30]
BioportalImporter v.1.2
NIFSTD:birnlex_1581
Tomasz Adamusiak
James Malone
Ele Holloway
HCC1395
A resting stage of a plant (as the lily, onion, hyacinth, or tulip) that is usually formed underground and consists of a short stem base bearing one or more buds enclosed in overlapping membranous or fleshy leaves.[accessedResource: BTO:0000159][accessDate: 2009-11-30]
MAT:0000367
BTO:0000159
James Malone
BioportalImporter v.1.2
bulb
Tomasz Adamusiak
James Malone
neoplasm of immature B and T cells
precursor B-cell
T-cell neoplasm
CHEBI:9130
Tomasz Adamusiak
Ele Holloway
sevoflurane
James Malone
BioportalImporter v.1.2
bronchial epithelium
NCIt:C32231
BTO:0001845
CL:0000558
Tomasz Adamusiak
Jie Zheng
BioportalImporter v.1.2
reticulocyte
An immature erythrocyte showing a basophilic reticulum under vital staining.[accessedResource: CL:0000558][accessDate: 2009-11-30]
James Malone
Ele Holloway
CORL88
OV90
James Malone
Ele Holloway
A secondary alcohol that has formula C15H18ClN3O.[accessedResource: CHEBI:38000][accessDate: 2009-11-30]
BioportalImporter v.1.2
CHEBI:38000
uniconazole[accessedResource: CHEBI:38000][accessDate: 2009-11-30]
(1E)-1-(4-chlorophenyl)-4,4-dimethyl-2-(1H-1,2,4-triazol-1-yl)pent-1-en-3-ol[accessedResource: CHEBI:38000][accessDate: 2009-11-30]
uniconazole-P
antineoplastic drug
CHEBI:35610
CHEBI:35610
James Malone
BioportalImporter v.1.2
A substance that inhibits or prevents the proliferation of neoplasms.[accessedResource: CHEBI:35610][accessDate: 2009-11-30]
ro:contains
contains
has_input
Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the A continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time.
has_participant
has_disease_location
is_role_of
is_broader_than
is_location_of_disease
Participates in is a primitive instance-level relation between a continuant and a process in which it participates. For example a scanner participates in a scanning process at some specific time.
participates_in
has_quality
has_role
is_input_of
Relation between a process and a material fulfilling a role (i.e. realizing a role within the context of the process). For example a human realizing role of teacher within a lesson teching process.
realizes
is_realized_by
relationship
contained_in
Containment obtains in each case between material and immaterial continuants, for instance: lung contained_in thoracic cavity; bladder contained_in pelvic cavity. Hence containment is not a transitive relation. If c part_of c1 at t then we have also, by our definition and by the axioms of mereology applied to spatial regions, c located_in c1 at t. Thus, many examples of instance-level location relations for continuants are in fact cases of instance-level parthood. For material continuants location and parthood coincide. Containment is location not involving parthood, and arises only where some immaterial continuant is involved. To understand this relation, we first define overlap for continuants as follows: c1 overlap c2 at t =def for some c, c part_of c1 at t and c part_of c2 at t.
ro:contained_in
EFO_0000823
has_part
part_of
EFO_0000822
For continuants: C part_of C' if and only if: given any c that instantiates C at a time t, there is some c' such that c' instantiates C' at time t, and c *part_of* c' at t. For processes: P part_of P' if and only if: given any p that instantiates P at a time t, there is some p' such that p' instantiates P' at time t, and p *part_of* p' at t. (Here *part_of* is the instance-level part-relation.)
has_unit
is_unit_of
Derivation as a relation between instances. The temporal relation of derivation is more complex. Transformation, on the instance level, is just the relation of identity: each adult is identical to some child existing at some earlier time. Derivation on the instance-level is a relation holding between non-identicals. More precisely, it holds between distinct material continuants when one succeeds the other across a temporal divide in such a way that at least a biologically significant portion of the matter of the earlier continuant is inherited by the later. Thus we will have axioms to the effect that from c derives_from c1 we can infer that c and c1 are not identical and that there is some instant of time t such that c1 exists only prior to and c only subsequent to t. We will also be able to infer that the spatial region occupied by c as it begins to exist at t overlaps with the spatial region occupied by c1 as it ceases to exist in the same instant.
derives_from
derived_into
inheres_in
bearer_of
is_tumor_of
has_tumor_type