1.2
19:11:2015 13:48
FlyBase_miscellaneous_CV
Imports terms from http://purl.obolibrary.org/obo/go/2014-09-20/go-simple.owl; http://purl.obolibrary.org/obo/fbdv/2014-07-29/fbdv.owl
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/FBdv.owl>))) [Axioms: 249 Logical Axioms: 70]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/fbcv_go_import.owl>))) [Axioms: 2082 Logical Axioms: 299]
Includes Ontology(OntologyID(OntologyIRI(<http://www.semanticweb.org/ontologies/2010/5/Ontology1275387730635/timing_relations_for_occurrents.owl>))) [Axioms: 115 Logical Axioms: 55]
OBO-Edit 2.3-beta5
mmc46
definition
OBO Foundry Uniquename
camcur
BrainName official abbreviation
BRAND NAME
EmbDevSlim
FORMULA
FlyTed temp subset for edit tracking purposes
Testis slim
INN
IUPAC NAME
InChI
InChIKey
terms for rd test ontology
SMILES
Abnormal/normal slim
Absent/present slim
Attribute slim
camcur
cell_quality
cur
warning of impending obsoletion
larval olfactory system
Relational slim: types of quality that require an additional entity in order to exist
Systematic synonym
Value slim
subset_property
subset_property
synonym_type_property
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
has_scope
in_subset
in_subset
shorthand
synonym
part_of
BFO:0000050
OBO_REL:part_of
external
part_of
part_of
part_of
OBO_REL:has_part
precedes
X precedes Y iff: end(X) before_or_simultaneous_with start(Y)
ends_before
preceded_by
2009-10-09T10:00:53Z
BFO:0000062
OBO_REL:preceded_by
djs93
preceded_by
preceded_by
X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)
proceeds
starts_after
inheres_in
RO:0000052
inheres_in
inheres_in
before_or_simultaneous_with
Primitive instance level timing relation between events
<=
simultaneous_with
t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)
before
t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)
during_which_ends
Perviously used http://purl.obolibrary.org/obo/RO_0002122 - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line.
encompasses
Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
ends_after
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
immediately_preceded_by
RO:0002087
starts_at_end_of
starts_at_end_of
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
starts_at_end_of
during_which_starts
Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
starts_before
immediately_precedes
RO:0002090
ends_at_start_of
ends_at_start_of
ends_at_start_of
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y))
X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y))
X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y).
regulates
RO:0002211
external
regulates
regulates
negatively regulates
RO:0002212
external
negatively_regulates
negatively_regulates
positively regulates
RO:0002213
external
positively_regulates
positively_regulates
has_member
has_age
has role
has_role
qualifier
qualifier
qualifier
temporary placeholder - this means that Obol could not infer the correct relation
towards
temporary placeholder - may be placed in OBO_REL; with relational qualities, the additional argument is the 'towards' argument; eg sensitivity towards chlorine. Relation binding a relational quality or disposition to the relevant type of entity.
towards
has_increased_mortality_rate
0
100
process boundary
time dimension = 0. An event is an instant.
event
Using BFO process boundary here, although I'd rather use a term name that didn't reference processes at all, which I see as distinct from stages.
continuant
occurrent
2009-10-01T05:56:28Z
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
BFO:0000003
FBdv:00007008
djs93
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
BFOC:ANON
independent continuant
object aggregate
organism
cell
CL:0000000
organism
An individual member of the species Drosophila melanogaster.
Drosophila
FBbt:00000001
fly_anatomy.ontology
whole organism
An individual member of the species Drosophila melanogaster.
FBC:DOS
adult sense organ
Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004).
FBbt:00004113
fly_anatomy.ontology
Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004).
FBC:auto_generated_definition
FlyBase:FBrf0007734
FlyBase:FBrf0031004
eye
FBbt:00004508
The compound eye is a light sensing organ composed of ommatidia.
compound eye
fly_anatomy.ontology
FBC:gg
The compound eye is a light sensing organ composed of ommatidia.
organ system
A division of the whole organism into specialized systems.
FBbt:00004856
fly_anatomy.ontology
A division of the whole organism into specialized systems.
FBC:gg
nervous system
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
FBbt:00005093
fly_anatomy.ontology
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
ISBN:978-3-11-014898-5
sense organ
FBbt:00005155
Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
fly_anatomy.ontology
FBC:DOS
Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
photoreceptor
A light sensitive sense organ.
FBbt:00005162
fly_anatomy.ontology
A light sensitive sense organ.
FBC:gg
external sensory organ
FBbt:00005168
eo
es
fly_anatomy.ontology
sensillum
anatomical structure
FBbt:00007001
Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
fly_anatomy.ontology
CARO:MAH
FBC:DOS
Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
cell
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
FBbt:00007002
fly_anatomy.ontology
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CARO:MAH
material anatomical entity
FBbt:00007016
fly_anatomy.ontology
compound cell cluster organ
An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue.
FBbt:00007230
fly_anatomy.ontology
An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue.
FBC:DOS
compound sense organ
Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906).
FBbt:00007234
compound sensillum
fly_anatomy.ontology
Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906).
FBC:auto_generated_definition
external compound sense organ
FBbt:00007235
fly_anatomy.ontology
multicellular structure
Anatomical structure that has multiple cells as parts.
FBbt:00100313
fly_anatomy.ontology
Anatomical structure that has multiple cells as parts.
FBC:DOS
anatomical entity
Anatomical entity which is part_of Drosophila melanogaster.
Drosophila
FBbt:10000000
fly_anatomy.ontology
Anatomical entity which is part_of Drosophila melanogaster.
CARO:MAH
thermotaxis behavior defective
FBcv:0000002
Phenotype that is a defect in thermotaxis (GO:0043052). 'thermotaxis' is defined as: '$sub_GO:0043052'
phenotypic_class
thermotaxis behaviour defective
FBC:DOS
Phenotype that is a defect in thermotaxis (GO:0043052). 'thermotaxis' is defined as: '$sub_GO:0043052'
male semi-fertile
FBcv:0000006
phenotypic_class
female semi-fertile
FBcv:0000007
phenotypic_class
modifier of variegation
FBcv:0000008
Genotype g1 is a modifier of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is significantly different from that caused by g2 alone.
phenotypic_class
variegation
FBC:DOS
Genotype g1 is a modifier of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is significantly different from that caused by g2 alone.
FBC:DOS
variegation
homeotic
FBcv:0000316
Phenotype that is the partial or full transformation of one or more segments (FBbt:00000003) or segmental appendages from one identity to another. For example, in antennapedia an antenna is partially or fully transformed into a leg.
phenotypic_class
FBC:DOS
Phenotype that is the partial or full transformation of one or more segments (FBbt:00000003) or segmental appendages from one identity to another. For example, in antennapedia an antenna is partially or fully transformed into a leg.
dorsal/ventral axis specification defective
FBcv:0000324
Phenotype that is a defect in dorsal/ventral axis specification (GO:0009950). 'dorsal/ventral axis specification' is defined as: '$sub_GO:0009950'
dorsal-ventral polarity
phenotypic_class
FBC:DOS
dorsal-ventral polarity
FBC:DOS
Phenotype that is a defect in dorsal/ventral axis specification (GO:0009950). 'dorsal/ventral axis specification' is defined as: '$sub_GO:0009950'
neurogenic phenotype
2011-09-13T02:42:10Z
A phenotype that is an expansion of the developing embryonic nervous system at the expense of developing ventral epidermis.
FBcv:0000325
Typically this is caused by and expansion of the population of neuroblasts at the expense of prospective epidermis, both of which originate in the ventral ectoderm.
djs93
phenotypic_class
A phenotype that is an expansion of the developing embryonic nervous system at the expense of developing ventral epidermis.
FlyBase:FBrf0040185
phenotypic class
FBcv:0000347
phenotypic_class
wild-type
FBcv:0000348
The canonical phenotype of a wild-type Drosophilid.
phenotypic_class
FBC:DOS
The canonical phenotype of a wild-type Drosophilid.
viable
A phenotype that is survival to mature adulthood, where mature is defined as after adult stage A3 (FBdv:00006012).
FBcv:0000349
Proforma field: MA8. Note, this term should not be used with the qualifier 'partially'. Use semi-viable or semi-lethal instead.
phenotypic_class
A phenotype that is survival to mature adulthood, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
partially lethal - majority live
50
5
50
5
FBcv:0000350
phenotypic_class
semi-viable
A phenotype of a population that is the death of some significant proportion of animals in that population, but less that half, prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of some significant proportion of animals in that population, but less that half, prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
lethal
98
98
FBcv:0000351
Note on usage: lethal is appropriate in cases where escaper adults are very rare. The lethal phase prior to becoming a mature adult may be further specified using children terms which specify stage.
phenotypic_class
phenotypic_class
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
partially lethal - majority die
50
98
50
98
FBcv:0000352
Stages during which there is significant death prior to mature adulthood can be indicated using one or more stage qualifiers.
phenotypic_class
semi-lethal
A phenotype of a population that is the death a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
A phenotype of a population that is the death a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:NB
FBC:DOS
FBC:KM
cell lethal
A phenotype that is a failure of mutant cells to survive.
FBcv:0000353
Typically, this phenotype is assayed in clones of cells.
phenotypic_class
A phenotype that is a failure of mutant cells to survive.
FBC:DOS
visible
A post-embryonic, macroscopic, anatomical phenotype.
FBcv:0000354
phenotypic_class
A post-embryonic, macroscopic, anatomical phenotype.
FBC:DOS
eye color defective
FBcv:0000355
Phenotype that is a defect in eye color compared to wild-type.
eye colour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in eye color compared to wild-type.
body color defective
A phenotype that is a defect in body color compared to wild-type.
FBcv:0000356
body colour defective
phenotypic_class
A phenotype that is a defect in body color compared to wild-type.
FBC:DOS
size defective
A phenotype that is a defect in the size of the whole body or some body part compared to wild-type.
FBcv:0000357
phenotypic_class
A phenotype that is a defect in the size of the whole body or some body part compared to wild-type.
FBC:DOS
small body
FBcv:0000358
Phenotype that is a decrease in body size compared to identically raised wild-type controls.
phenotypic_class
FBC:DOS
Phenotype that is a decrease in body size compared to identically raised wild-type controls.
decreased cell number
FBcv:0000359
Phenotype that is a decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth - there may be fewer cells in an otherwise normal volume of tissue.
phenotypic_class
reduced cell number
FBC:DOS
Phenotype that is a decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth - there may be fewer cells in an otherwise normal volume of tissue.
decreased cell size
FBcv:0000360
Note that defects in cell size are not necessarily the result of defects in cell growth. A change in the rate of cell division in the absence of any change in cell growth rate can result in smaller or larger cells.
Phenotype that is a decrease in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth of a tissue - there may be more cells in an otherwise normal volume of tissue.
phenotypic_class
reduced cell size
FBC:DOS
Phenotype that is a decrease in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth of a tissue - there may be more cells in an otherwise normal volume of tissue.
large body
FBcv:0000361
Phenotype that is an increase in body size compared to identically raised wild-type controls.
phenotypic_class
FBC:DOS
Phenotype that is an increase in body size compared to identically raised wild-type controls.
increased cell number
FBcv:0000362
Phenotype that is an increase in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
This phenotype is not necessarily accompanied by overgrowth of a tissue - there may be more cells in an otherwise normal volume of tissue. It is not necessarily due to an increase in cell growth -it may be the result of an increase in the division rate at normal growth rates. It may not even be due to an increase in the cell division rate - a reduced rate of cell death while the division rate is normal could also achieve it.
phenotypic_class
FBC:DOS
Phenotype that is an increase in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
increased cell size
FBcv:0000363
May be due to an increase in the cell growth rate or to a reduced rate of cell division along with a normal rate of cell growth.
Phenotype that is an increase in the size of cells compared to wild-type.
phenotypic_class
FBC:DOS
Phenotype that is an increase in the size of cells compared to wild-type.
sterile
A phenotype that is the inability to produce a zygote.
FBcv:0000364
The cause of sterility may be physical or behavioral. Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead.
phenotypic_class
A phenotype that is the inability to produce a zygote.
FBC:DOS
semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.
FBcv:0000365
phenotypic_class
reduced fecundity
A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.
FBC:DOS
FBC:DOS
reduced fecundity
female sterile
A phenotype that is the inability of females to mate and produce fertilized offspring.
FBcv:0000366
The cause of sterility may be physical or behavioral. Note: this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead.
phenotypic_class
A phenotype that is the inability of females to mate and produce fertilized offspring.
FBC:DOS
female semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.
FBcv:0000367
phenotypic_class
A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.
FBC:DOS
female sterile germline-dependent
A phenotype of female sterility due to defects in the female germline.
FBcv:0000368
female sterile germ-line-dependent
phenotypic_class
A phenotype of female sterility due to defects in the female germline.
FBC:DOS
female sterile soma-dependent
A phenotype of female sterility due to defects in somatic cells of the ovary (FBbt:00006030), or of the products of these cells (such as eggshell).
FBcv:0000369
phenotypic_class
A phenotype of female sterility due to defects in somatic cells of the ovary (FBbt:00006030), or of the products of these cells (such as eggshell).
FBC:DOS
male sterile
A phenotype that is the inability of males to mate and produce fertilized offspring.
FBcv:0000370
The cause of sterility may be physical or behavioral. Note - this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead.
phenotypic_class
A phenotype that is the inability of males to mate and produce fertilized offspring.
FBC:DOS
male semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.
FBcv:0000371
phenotypic_class
A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.
FBC:DOS
male sterile germline-dependent
A phenotype of male sterility due to defects in the male germline.
FBcv:0000372
male sterile germ-line-dependent
phenotypic_class
A phenotype of male sterility due to defects in the male germline.
FBC:DOS
male sterile soma-dependent
A phenotype of male sterility due to defects in somatic cells of the testis (FBbt:00006031) or of the products of these cells.
FBcv:0000373
phenotypic_class
A phenotype of male sterility due to defects in somatic cells of the testis (FBbt:00006031) or of the products of these cells.
FBC:DOS
fertile
A phenotype that is the ability to mate and as a result produce fertilized eggs.
FBcv:0000374
Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead.
phenotypic_class
A phenotype that is the ability to mate and as a result produce fertilized eggs.
FBC:DOS
semi-fertile
FBcv:0000375
Phenotype that is a reduction in the proportion of fertilized eggs produced to, but only to > 50% of wild-type.
phenotypic_class
reduced fecundity
FBC:DOS
Phenotype that is a reduction in the proportion of fertilized eggs produced to, but only to > 50% of wild-type.
FBC:DOS
reduced fecundity
male fertile
A phenotype that is the ability of males to mate and as a result produce fertilized eggs.
FBcv:0000376
Note - this term should not be used with the qualifier 'partially' - use male semi-sterile or male semi-fertile instead.
phenotypic_class
A phenotype that is the ability of males to mate and as a result produce fertilized eggs.
FBC:DOS
female fertile
A phenotype that is the ability of females to mate and as a result produce fertilized eggs.
FBcv:0000377
Note - this term should not be used with the qualifier 'partially' - use female semi-sterile or female semi-fertile instead.
phenotypic_class
A phenotype that is the ability of females to mate and as a result produce fertilized eggs.
FBC:DOS
grandchildless
A phenotype in which all offspring are sterile. Typically, this is due to maternal effect sterility resulting from defects in pole cell development.
FBcv:0000378
phenotypic_class
A phenotype in which all offspring are sterile. Typically, this is due to maternal effect sterility resulting from defects in pole cell development.
ISBN:978-0-87969-321-3
enhancer of variegation
FBcv:0000379
Genotype g1 is an enhancer of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is greater than that caused by g2 alone.
Typically, g2 is a chromosomal aberration or an insertion.
phenotypic_class
FBC:DOS
Genotype g1 is an enhancer of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is greater than that caused by g2 alone.
non-enhancer of variegation
FBcv:0000380
Genotype g1 is a non-enhancer of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not greater than that caused by g2 alone.
phenotypic_class
FBC:DOS
Genotype g1 is a non-enhancer of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not greater than that caused by g2 alone.
suppressor of variegation
FBcv:0000381
Genotype g1 is a suppressor of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is less than that caused by to g2 alone.
Typically, g2 is a chromosomal aberration or an insertion.
phenotypic_class
FBC:DOS
Genotype g1 is a suppressor of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is less than that caused by to g2 alone.
non-suppressor of variegation
FBcv:0000382
Genotype g1 is a non-suppressor of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not less than that caused by g2 alone.
phenotypic_class
FBC:DOS
Genotype g1 is a non-suppressor of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not less than that caused by g2 alone.
auxotroph
A phenotype that is the inability to synthesize some organic compound that can be synthesized by wild-type animals, and that is required for normal growth and/or development.
FBcv:0000383
phenotypic_class
A phenotype that is the inability to synthesize some organic compound that can be synthesized by wild-type animals, and that is required for normal growth and/or development.
http://en.wikipedia.org/wiki/Auxotrophic
aging defective
FBcv:0000384
Phenotype that is a defect in aging (GO:0007568). 'aging' is defined as: '$sub_GO:0007568'
phenotypic_class
GOC:PO_curators
Phenotype that is a defect in aging (GO:0007568). 'aging' is defined as: '$sub_GO:0007568'
short lived
5
5
FBcv:0000385
Phenotype that is a shorter adult life-span than wild-type.
phenotypic_class
phenotypic_class
increased adult mortality
FBC:DOS
Phenotype that is a shorter adult life-span than wild-type.
long lived
FBcv:0000386
Phenotype that is a longer adult life-span than wild-type.
phenotypic_class
FBC:DOS
Phenotype that is a longer adult life-span than wild-type.
behavior defective
FBcv:0000387
behavioral
behaviour defective
behavioural
phenotypic_class
gravitaxis defective
FBcv:0000388
Phenotype that is a change in the strong tendency, seen in wild-type Drosophila melanogaster, to climb - a behavior otherwise known as negative gravitaxis (GO:0048060 ; movement away from the source of gravity).
geotaxis behaviour defective
gravitaxis behavior defective
phenotypic_class
FBC:DOS
Phenotype that is a change in the strong tendency, seen in wild-type Drosophila melanogaster, to climb - a behavior otherwise known as negative gravitaxis (GO:0048060 ; movement away from the source of gravity).
paralytic
FBcv:0000389
Phenotype that is a disposition to paralysis under conditions that do not cause paralysis in a wild-type animal. Paralysis is defined as an inability to exhibit `multicellular organismal movement` (GO:0050879)
phenotypic_class
FBC:DOS
Phenotype that is a disposition to paralysis under conditions that do not cause paralysis in a wild-type animal. Paralysis is defined as an inability to exhibit `multicellular organismal movement` (GO:0050879)
hypoactive
A phenotype consisting of decreased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBcv:0000390
phenotypic_class
A phenotype consisting of decreased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBC:DOS
bang sensitive
A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis.
FBcv:0000391
easily shocked
phenotypic_class
A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis.
FlyBase:FBrf0022877
FlyBase:FBrf0022877
easily shocked
hyperactive
A phenotype consisting of increased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBcv:0000392
phenotypic_class
A phenotype consisting of increased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBC:DOS
pain response defective
FBcv:0000393
Phenotype that is a defect in response to pain (GO:0048265). 'response to pain' is defined as: '$sub_GO:0048265'
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to pain (GO:0048265). 'response to pain' is defined as: '$sub_GO:0048265'
circadian rhythm defective
FBcv:0000394
Phenotype that is a defect in circadian rhythm (GO:0007623). 'circadian rhythm' is defined as: '$sub_GO:0007623'
phenotypic_class
FBC:DOS
Phenotype that is a defect in circadian rhythm (GO:0007623). 'circadian rhythm' is defined as: '$sub_GO:0007623'
locomotor rhythm defective
FBcv:0000395
Phenotype that is a defect in locomotor rhythm (GO:0045475). 'locomotor rhythm' is defined as: '$sub_GO:0045475'
phenotypic_class
FBC:DOS
Phenotype that is a defect in locomotor rhythm (GO:0045475). 'locomotor rhythm' is defined as: '$sub_GO:0045475'
eclosion rhythm defective
FBcv:0000396
Phenotype that is a defect in eclosion rhythm (GO:0008062). 'eclosion rhythm' is defined as: '$sub_GO:0008062'
phenotypic_class
FBC:DOS
Phenotype that is a defect in eclosion rhythm (GO:0008062). 'eclosion rhythm' is defined as: '$sub_GO:0008062'
learning defective
FBcv:0000397
Phenotype that is a defect in learning (GO:0007612). 'learning' is defined as: '$sub_GO:0007612'
phenotypic_class
FBC:DOS
Phenotype that is a defect in learning (GO:0007612). 'learning' is defined as: '$sub_GO:0007612'
memory defective
FBcv:0000398
Phenotype that is a defect in memory (GO:0007613). 'memory' is defined as: '$sub_GO:0007613'
phenotypic_class
FBC:DOS
Phenotype that is a defect in memory (GO:0007613). 'memory' is defined as: '$sub_GO:0007613'
courtship behavior defective
FBcv:0000399
Phenotype that is a defect in courtship behavior (GO:0007619). 'courtship behavior' is defined as: '$sub_GO:0007619'
phenotypic_class
FBC:DOS
Phenotype that is a defect in courtship behavior (GO:0007619). 'courtship behavior' is defined as: '$sub_GO:0007619'
mating defective
FBcv:0000400
Phenotype that is a defect in mating (GO:0007618). 'mating' is defined as: '$sub_GO:0007618'
phenotypic_class
FBC:DOS
Phenotype that is a defect in mating (GO:0007618). 'mating' is defined as: '$sub_GO:0007618'
mating rhythm defective
FBcv:0000401
Phenotype that is a defect in circadian mating behavior (GO:0035648). 'circadian mating behavior' is defined as: '$sub_GO:0035648'
phenotypic_class
FBC:DOS
Phenotype that is a defect in circadian mating behavior (GO:0035648). 'circadian mating behavior' is defined as: '$sub_GO:0035648'
song defective
FBcv:0000402
Phenotype that is a defect in male courtship behavior, veined wing generated song production (GO:0045433). This is defined as '$sub_GO:0045433'
phenotypic_class
singing defective
song production defective
FBC:SM
singing defective
FBC:SM
song production defective
FBC:DOS
Phenotype that is a defect in male courtship behavior, veined wing generated song production (GO:0045433). This is defined as '$sub_GO:0045433'
chemosensitive behavior defective
FBcv:0000403
Phenotype that is a defect in chemosensory behavior (GO:0007635). 'chemosensory behavior' is defined as: '$sub_GO:0007635'.'
chemosensitive behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in chemosensory behavior (GO:0007635). 'chemosensory behavior' is defined as: '$sub_GO:0007635'.'
smell perception defective
FBcv:0000404
Phenotype that is a defect in sensory perception of smell (GO:0007608). 'sensory perception of smell' is defined as: '$sub_GO:0007608'
olfaction defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in sensory perception of smell (GO:0007608). 'sensory perception of smell' is defined as: '$sub_GO:0007608'
taste perception defective
FBcv:0000405
Phenotype that is a defect in sensory perception of taste (GO:0050909). 'sensory perception of taste' is defined as: '$sub_GO:0050909'
gustation defective
phenotypic_class
taste defective
FBC:DOS
Phenotype that is a defect in sensory perception of taste (GO:0050909). 'sensory perception of taste' is defined as: '$sub_GO:0050909'
tarsal response defective
FBcv:0000406
Phenotype that is a failure to exhibit proboscis extension reflex in response to a sugar stimulus via taste sensilla on the tarsus.
phenotypic_class
FBC:DOS
Phenotype that is a failure to exhibit proboscis extension reflex in response to a sugar stimulus via taste sensilla on the tarsus.
auditory perception defective
FBcv:0000407
Phenotype that is a defect in sensory perception of sound (GO:0007605). 'sensory perception of sound' is defined as: '$sub_GO:0007605'
auditory system defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in sensory perception of sound (GO:0007605). 'sensory perception of sound' is defined as: '$sub_GO:0007605'
stress response defective
FBcv:0000408
Phenotype that is a defect in response to stress (GO:0006950). 'response to stress' is defined as: '$sub_GO:0006950'
environmental stress response defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to stress (GO:0006950). 'response to stress' is defined as: '$sub_GO:0006950'
osmotic stress response defective
FBcv:0000409
Phenotype that is a defect in response to osmotic stress (GO:0006970). 'response to osmotic stress' is defined as: '$sub_GO:0006970'
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to osmotic stress (GO:0006970). 'response to osmotic stress' is defined as: '$sub_GO:0006970'
heat stress response defective
FBcv:0000410
Phenotype that is a defect in response to heat (GO:0009408). 'response to heat' is defined as: '$sub_GO:0009408'
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to heat (GO:0009408). 'response to heat' is defined as: '$sub_GO:0009408'
visual behavior defective
FBcv:0000411
Phenotype that is a defect in visual behavior (GO:0007632). 'visual behavior' is defined as: '$sub_GO:0007632'
phenotypic_class
visual behaviour defective
FBC:DOS
Phenotype that is a defect in visual behavior (GO:0007632). 'visual behavior' is defined as: '$sub_GO:0007632'
optomotor response defective
FBcv:0000412
Phenotype that is a defect in optomotor response: a motor response during flight or walking that serves to stabilize both image formation on the retina and locomotor course.
optomotor behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in optomotor response: a motor response during flight or walking that serves to stabilize both image formation on the retina and locomotor course.
phototaxis defective
FBcv:0000413
Phenotype that is a defect in phototaxis (GO:0042331). 'phototaxis' is defined as: '$sub_GO:0042331'
phenotypic_class
phototaxis behaviour defective
FBC:DOS
Phenotype that is a defect in phototaxis (GO:0042331). 'phototaxis' is defined as: '$sub_GO:0042331'
locomotor behavior defective
FBcv:0000414
Phenotype that is a defect in locomotory behavior (GO:0007626). 'locomotory behavior' is defined as: '$sub_GO:0007626'
locomotor behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in locomotory behavior (GO:0007626). 'locomotory behavior' is defined as: '$sub_GO:0007626'
jumping defective
FBcv:0000415
Phenotype that is a reduced ability to jump or a reduced jump response. This may be due to neurological or muscular defects.
phenotypic_class
FBC:DOS
Phenotype that is a reduced ability to jump or a reduced jump response. This may be due to neurological or muscular defects.
uncoordinated
FBcv:0000416
Phenotype that is a lack of normal co-ordination in locomotor activity.
phenotypic_class
FBC:DOS
Phenotype that is a lack of normal co-ordination in locomotor activity.
flight defective
FBcv:0000417
Phenotype that is a defect in flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
This term is agnostic as to the causes of defects in flight. An animal's flight may be defective for mechanical, behavioral or sensory reasons.
flight behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
flightless
FBcv:0000418
Phenotype that is the absence of flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
This term is agnostic as to the causes of flightlessness. An animal may be flightless for mechanical or behavioral reasons.
phenotypic_class
FBC:DOS
Phenotype that is the absence of flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
feeding behavior defective
FBcv:0000419
Phenotype that is a defect in feeding behavior (GO:0007631). 'feeding behavior' is defined as: '$sub_GO:0007631'
feeding behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in feeding behavior (GO:0007631). 'feeding behavior' is defined as: '$sub_GO:0007631'
grooming behavior defective
FBcv:0000420
Phenotype that is a defect in grooming behavior (GO:0007625). 'grooming behavior' is defined as: '$sub_GO:0007625'
grooming behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in grooming behavior (GO:0007625). 'grooming behavior' is defined as: '$sub_GO:0007625'
touch sensitivity defective
FBcv:0000421
Phenotype that is reduction in or loss of a stereotypical locomotory response to touch.
This phenotype is commonly assayed by scoring larval avoidance responses following stroking of the thoracic segments (see Kernan et al., 1994). On its own, this is not sufficient evidence for a defect in sensory perception of touch, as motor defects can also cause this phenotype. Internal note -
phenotypic_class
FlyBase:FBrf0073546
Phenotype that is reduction in or loss of a stereotypical locomotory response to touch.
photoperiod response variant
FBcv:0000422
Phenotype that is a defect in entrainment of circadian clock by photoperiod (GO:0043153), which is defined as: '$sub_GO:0043153'
phenotypic_class
FBC:DOS
Phenotype that is a defect in entrainment of circadian clock by photoperiod (GO:0043153), which is defined as: '$sub_GO:0043153'
DNA repair defective
FBcv:0000423
Phenotype that is a defect in DNA repair (GO:0006281). 'DNA repair' is defined as: '$sub_GO:0006281'
phenotypic_class
FBC:DOS
Phenotype that is a defect in DNA repair (GO:0006281). 'DNA repair' is defined as: '$sub_GO:0006281'
cell death defective
FBcv:0000424
Phenotype that is a change in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type. This may be due to effects on the regulation of cell death (GO:0010941) or in cell death (GO:0008219) pathways themselves.
apoptosis defective
pcd defective
phenotypic_class
programmed cell death defective
FBC:DOS
Phenotype that is a change in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type. This may be due to effects on the regulation of cell death (GO:0010941) or in cell death (GO:0008219) pathways themselves.
increased cell death
FBcv:0000425
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
pcd increase
phenotypic_class
programmed cell death increase
FBC:DOS
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
decreased cell death
FBcv:0000426
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
pcd decrease
phenotypic_class
programmed cell death decrease
FBC:DOS
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
cell growth defective
FBcv:0000427
Note that defects in cell size are not necessarily the result of defects in cell growth. A change in the rate of cell division in the absence of any change in cell growth rate can result in smaller or larger cells.
Phenotype that is a defect in cell growth (GO:0016049). 'cell growth' is defined as: '$sub_GO:0016049'
phenotypic_class
FBC:DOS
Phenotype that is a defect in cell growth (GO:0016049). 'cell growth' is defined as: '$sub_GO:0016049'
cell size defective
FBcv:0000428
Phenotype that is a defect in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
phenotypic_class
FBC:DOS
Phenotype that is a defect in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
cell shape defective
FBcv:0000429
Phenotype that is a defect in the shape (PATO:0000052) of some cell compared to wild-type.
phenotypic_class
FBC:DOS
Phenotype that is a defect in the shape (PATO:0000052) of some cell compared to wild-type.
cell polarity defective
FBcv:0000430
Phenotype that is a defect in the asymmetric distribution of components within a cell. For example an epithelial cell is 'cell polarity defective' if it lacks the normal asymmetric distribution of proteins or cell components such as junctions or villi along its apical-basal axis.
phenotypic_class
FBC:DOS
Phenotype that is a defect in the asymmetric distribution of components within a cell. For example an epithelial cell is 'cell polarity defective' if it lacks the normal asymmetric distribution of proteins or cell components such as junctions or villi along its apical-basal axis.
meiotic cell cycle defective
FBcv:0000431
Phenotype that is a defect in meiotic cell cycle (GO:0051321). 'meiotic cell cycle' is defined as: '$sub_GO:0051321'
meiotic
phenotypic_class
FBC:DOS
Phenotype that is a defect in meiotic cell cycle (GO:0051321). 'meiotic cell cycle' is defined as: '$sub_GO:0051321'
mitotic cell cycle defective
FBcv:0000432
Phenotype that is a defect in mitotic cell cycle (GO:0000278). 'mitotic cell cycle' is defined as: '$sub_GO:0000278'
mitotic
phenotypic_class
FBC:DOS
Phenotype that is a defect in mitotic cell cycle (GO:0000278). 'mitotic cell cycle' is defined as: '$sub_GO:0000278'
cytokinesis defective
FBcv:0000433
Phenotype that is a defect in cytokinesis (GO:0000910). 'cytokinesis' is defined as: '$sub_GO:0000910'
phenotypic_class
FBC:DOS
Phenotype that is a defect in cytokinesis (GO:0000910). 'cytokinesis' is defined as: '$sub_GO:0000910'
neurophysiology defective
FBcv:0000434
Phenotype that is a defect in the electrophysiological properties of some class of neurons, muscles or anatomical structure of the nervous system. Examples of these phenotypes at the neuron class level include defects in spontaneous or evoked excitatory junction potential. Examples at a more gross anatomical level include abnormal retinal electrophysiology (e.g.- measured by an electroretinogram).
phenotypic_class
FBC:DOS
Phenotype that is a defect in the electrophysiological properties of some class of neurons, muscles or anatomical structure of the nervous system. Examples of these phenotypes at the neuron class level include defects in spontaneous or evoked excitatory junction potential. Examples at a more gross anatomical level include abnormal retinal electrophysiology (e.g.- measured by an electroretinogram).
neuroanatomy defective
FBcv:0000435
Phenotype that is a defect in nervous system (FBbt:00005093). 'nervous system' is defined as: '$sub_FBbt:00005093'
phenotypic_class
FBC:DOS
Phenotype that is a defect in nervous system (FBbt:00005093). 'nervous system' is defined as: '$sub_FBbt:00005093'
sex-determination defective
FBcv:0000436
Phenotype that is a defect in sex determination (GO:0007530). 'sex determination' is defined as: '$sub_GO:0007530'
phenotypic_class
FBC:DOS
Phenotype that is a defect in sex determination (GO:0007530). 'sex determination' is defined as: '$sub_GO:0007530'
dosage compensation defective
FBcv:0000437
Phenotype that is a defect in dosage compensation (GO:0007549). 'dosage compensation' is defined as: '$sub_GO:0007549'
phenotypic_class
FBC:DOS
Phenotype that is a defect in dosage compensation (GO:0007549). 'dosage compensation' is defined as: '$sub_GO:0007549'
electrophoretic variant
FBcv:0000438
Phenotype that is a difference in electrophoretic migration of a gene product compared to wild-type.
phenotypic_class
FBC:DOS
Phenotype that is a difference in electrophoretic migration of a gene product compared to wild-type.
chemical resistant
FBcv:0000439
Phenotype that is a decreased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
phenotypic_class
FBC:DOS
Phenotype that is a decreased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
chemical sensitive
FBcv:0000440
Phenotype that is an increased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
phenotypic_class
FBC:DOS
Phenotype that is an increased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
radiation resistant
FBcv:0000441
Phenotype that is a decreased tendency for radiation exposure to cause toxic effects.
phenotypic_class
FBC:DOS
Phenotype that is a decreased tendency for radiation exposure to cause toxic effects.
radiation sensitive
FBcv:0000442
Phenotype that is an increased tendency for radiation exposure to cause toxic effects.
phenotypic_class
FBC:DOS
Phenotype that is an increased tendency for radiation exposure to cause toxic effects.
Minute
Dominant phenotype consisting of short slender bristles and delayed development. Homozygotes are cell lethal.
FBcv:0000443
The phenotype may be a general result of mutations in essential components of the protein synthesis pathyway, as a number of Minutes encode ribosomal proteins. In an animal that is heterozygous for a Minute mutation, cells with two wild-type alleles of the affected gene have a growth advantage. Many developmental studies take advantage of this fact to give somatic clones a growth advantage. The term 'Minute' should not be used to annotate the resulting phenotypes.
phenotypic_class
Dominant phenotype consisting of short slender bristles and delayed development. Homozygotes are cell lethal.
FlyBase:FBrf0066905
hyperplasia
FBcv:0000444
Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.
hyperplastic
phenotypic_class
ISBN:9780198506737
Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.
tumorigenic
FBcv:0000445
Phenotype that is characterized by the formation of abnormal masses of tissue (tumors) as the result of neoplasia.
phenotypic_class
FBC:DOS
Phenotype that is characterized by the formation of abnormal masses of tissue (tumors) as the result of neoplasia.
melanotic mass phenotype
FBcv:0000446
Melanotic capsules are formed around foreign bodies in wild-type animals as part of the immune response, for example as a protection against parasitoid wasps. Some, but not all melanotic mass phenotypes involve ectopic activation of this immmune response. While melanotic masses are commonly referred to as melanotic tumors in the historical listerature, this is a misnomer as they are rarely neoplastic.
Phenotype characterized by the formation of lumps of melanotic tissue inside the body in the absence of foreign bodies.
melanotic 'tumor'
phenotypic_class
FlyBase:FBrf0094387
FlyBase:FBrf0194475
Phenotype characterized by the formation of lumps of melanotic tissue inside the body in the absence of foreign bodies.
melanotic necrosis
FBcv:0000447
Phenotype characterized by closely associated necrosis and melanization.
phenotypic_class
FlyBase:FBrf0155704
Phenotype characterized by closely associated necrosis and melanization.
immune response defective
FBcv:0000448
Phenotype that is a defect in immune response (GO:0006955). 'immune response' is defined as: '$sub_GO:0006955'
phenotypic_class
FBC:DOS
Phenotype that is a defect in immune response (GO:0006955). 'immune response' is defined as: '$sub_GO:0006955'
planar polarity defective
FBcv:0000449
For apical-basal polarity phenotypes of epithelia, the appropriate term is 'cell polarity defective'.
Phenotype that is a defect in establishment of planar polarity (GO:0001736). 'establishment of planar polarity' is defined as: '$sub_GO:0001736'
phenotypic_class
tissue polarity defective
GOC:dph
Phenotype that is a defect in establishment of planar polarity (GO:0001736). 'establishment of planar polarity' is defined as: '$sub_GO:0001736'
developmental rate defective
A more complete formalisation would require a clause specifying stage. It might be possible to do this in OWL using the same system as we are using for lethal phase.
FBcv:0000450
Phenotype that is a change in the rate of some developmental process (GO:0032502) taking place prior to mature adulthood (defined as adult stage A3), compared to wild-type. Note, developmental processes include stages in development of the whole animal (e.g.- larval development) as well as specific sub-processes, such as dorsal closure.
phenotypic_class
FBC:DOS
Phenotype that is a change in the rate of some developmental process (GO:0032502) taking place prior to mature adulthood (defined as adult stage A3), compared to wild-type. Note, developmental processes include stages in development of the whole animal (e.g.- larval development) as well as specific sub-processes, such as dorsal closure.
wound healing defective
FBcv:0000451
Phenotype that is a defect in wound healing (GO:0042060). 'wound healing' is defined as: '$sub_GO:0042060'
phenotypic_class
GOC:bf
PMID:15269788
Phenotype that is a defect in wound healing (GO:0042060). 'wound healing' is defined as: '$sub_GO:0042060'
body size defective
FBcv:0000665
Phenotype that is an abnormality in body size compared to wild-type animals raised under the same conditions as the animals exhibiting the phenotype.
phenotypic_class
FBC:DOS
Phenotype that is an abnormality in body size compared to wild-type animals raised under the same conditions as the animals exhibiting the phenotype.
cell adhesion defective
FBcv:0000668
Phenotype that is a defect in cell adhesion (GO:0007155). 'cell adhesion' is defined as: '$sub_GO:0007155'
phenotypic_class
FBC:DOS
Phenotype that is a defect in cell adhesion (GO:0007155). 'cell adhesion' is defined as: '$sub_GO:0007155'
hatching behavior defective
FBcv:0000669
Phenotype that is a defect in hatching behavior (GO:0035187). 'hatching behavior' is defined as: '$sub_GO:0035187'
hatching behaviour defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in hatching behavior (GO:0035187). 'hatching behavior' is defined as: '$sub_GO:0035187'
eclosion defective
FBcv:0000670
Phenotype that is a defect in eclosion (GO:0007562). 'eclosion' is defined as: '$sub_GO:0007562'
phenotypic_class
FBC:DOS
Phenotype that is a defect in eclosion (GO:0007562). 'eclosion' is defined as: '$sub_GO:0007562'
cell cycle defective
FBcv:0000671
Phenotype that is a defect in cell cycle (GO:0007049). 'cell cycle' is defined as: '$sub_GO:0007049'
phenotypic_class
FBC:DOS
Phenotype that is a defect in cell cycle (GO:0007049). 'cell cycle' is defined as: '$sub_GO:0007049'
endomitotic cell cycle defective
FBcv:0000672
Phenotype that is a defect in endomitotic cell cycle (GO:0007113). 'endomitotic cell cycle' is defined as: '$sub_GO:0007113'
endocycle defective
phenotypic_class
FBC:DOS
Phenotype that is a defect in endomitotic cell cycle (GO:0007113). 'endomitotic cell cycle' is defined as: '$sub_GO:0007113'
circadian behavior defective
2009-11-30T11:06:35Z
FBcv:0000679
Phenotype that is a defect in circadian behavior (GO:0048512). 'circadian behavior' is defined as: '$sub_GO:0048512'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in circadian behavior (GO:0048512). 'circadian behavior' is defined as: '$sub_GO:0048512'
proboscis extension reflex defective
FBcv:0000680
Phenotype that is a defect in proboscis extension reflex (GO:0007637). 'proboscis extension reflex' is defined as: '$sub_GO:0007637'
phenotypic_class
FBC:DOS
Phenotype that is a defect in proboscis extension reflex (GO:0007637). 'proboscis extension reflex' is defined as: '$sub_GO:0007637'
sensory perception defective
2010-02-23T12:28:26Z
FBcv:0000681
Phenotype that is a defect in sensory perception (GO:0007600). 'sensory perception' is defined as: '$sub_GO:0007600'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in sensory perception (GO:0007600). 'sensory perception' is defined as: '$sub_GO:0007600'
touch perception defective
FBcv:0000682
Phenotype that is a defect in sensory perception of touch (GO:0050975). 'sensory perception of touch' is defined as: '$sub_GO:0050975'
phenotypic_class
touch perception defective
FBC:DOS
Phenotype that is a defect in sensory perception of touch (GO:0050975). 'sensory perception of touch' is defined as: '$sub_GO:0050975'
temperature response defective
2010-02-23T12:51:02Z
FBcv:0000683
Phenotype that is a defect in response to temperature stimulus (GO:0009266). 'response to temperature stimulus' is defined as: '$sub_GO:0009266'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to temperature stimulus (GO:0009266). 'response to temperature stimulus' is defined as: '$sub_GO:0009266'
cold stress response defective
2010-02-23T02:11:27Z
FBcv:0000684
Phenotype that is a defect in response to cold (GO:0009409). 'response to cold' is defined as: '$sub_GO:0009409'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to cold (GO:0009409). 'response to cold' is defined as: '$sub_GO:0009409'
axis specification defective
FBcv:0000686
Phenotype that is a defect in axis specification (GO:0009798). 'axis specification' is defined as: '$sub_GO:0009798'
This phenotypic class does not encompass planar polarity.
phenotypic_class
FBC:DOS
Phenotype that is a defect in axis specification (GO:0009798). 'axis specification' is defined as: '$sub_GO:0009798'
embryonic/larval segmentation phenotype
A phenotype that is a disruption in the wild-type pattern of segments or parasegments of the embryo or larva.
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
FBcv:0000698
phenotypic_class
A phenotype that is a disruption in the wild-type pattern of segments or parasegments of the embryo or larva.
FlyBase:FBrf0035438
pair rule phenotype
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
Embryonic/larval segmentation phenotype that is the complete or partial loss of alternate segments or parasegments.
FBcv:0000699
phenotypic_class
Embryonic/larval segmentation phenotype that is the complete or partial loss of alternate segments or parasegments.
FlyBase:FBrf0035438
even pair-rule phenotype
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
Embryonic/larval segmentation phenotype that is the complete or partial loss of even segments.
FBcv:0000700
phenotypic_class
Embryonic/larval segmentation phenotype that is the complete or partial loss of even segments.
FlyBase:FBrf0035438
odd pair-rule phenotype
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
Embryonic/larval segmentation phenotype that is the complete or partial loss of odd segments.
FBcv:0000701
phenotypic_class
Embryonic/larval segmentation phenotype that is the complete or partial loss of odd segments.
FlyBase:FBrf0035438
segment polarity phenotype
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
Embryonic/larval segmentation phenotype in which some fraction of each segment (along the anterior-posterior axis) is deleted and replaced by a mirror image duplication of the remaining part of the segment.
FBcv:0000702
phenotypic_class
Embryonic/larval segmentation phenotype in which some fraction of each segment (along the anterior-posterior axis) is deleted and replaced by a mirror image duplication of the remaining part of the segment.
FlyBase:FBrf0035438
gap phenotype
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
Embryonic/larval segmentation phenotype that is the complete loss of a contiguous stretch of 2 or more segments.
FBcv:0000703
phenotypic_class
Embryonic/larval segmentation phenotype that is the complete loss of a contiguous stretch of 2 or more segments.
FlyBase:FBrf0035438
sleep defective
2010-09-20T12:06:13Z
FBcv:0000705
Phenotype that is a defect in sleep (GO:0030431). 'sleep' is defined as: '$sub_GO:0030431'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in sleep (GO:0030431). 'sleep' is defined as: '$sub_GO:0030431'
diapause defective
2010-09-20T12:06:28Z
FBcv:0000706
Phenotype that is a defect in entry into diapause (GO:0055115). 'entry into diapause' is defined as: '$sub_GO:0055115'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in entry into diapause (GO:0055115). 'entry into diapause' is defined as: '$sub_GO:0055115'
reproductive diapause defective
2010-09-20T12:21:29Z
FBcv:0000707
Phenotype that is a defect in entry into reproductive diapause (GO:0055116). 'entry into reproductive diapause' is defined as: '$sub_GO:0055116'
djs93
phenotypic_class
FBC:DOS
Phenotype that is a defect in entry into reproductive diapause (GO:0055116). 'entry into reproductive diapause' is defined as: '$sub_GO:0055116'
starvation stress response defective
FBcv:0000708
Phenotype that is a defect in response to starvation (GO:0042594). 'response to starvation' is defined as: '$sub_GO:0042594'
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to starvation (GO:0042594). 'response to starvation' is defined as: '$sub_GO:0042594'
cell number defective
FBcv:0000709
Phenotype that is an increase or decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by defects in cell growth - there may be a greater or lesser number of cells in an otherwise normal volume of tissue.
phenotypic_class
FBC:DOS
Phenotype that is an increase or decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by defects in cell growth - there may be a greater or lesser number of cells in an otherwise normal volume of tissue.
jumpless
2011-03-10T04:57:06Z
FBcv:0000713
Phenotype that is a inability to jump. This may be due to neurological or muscular defects.
djs93
phenotypic_class
FBC:DOS
Phenotype that is a inability to jump. This may be due to neurological or muscular defects.
cell migration defective
FBcv:0000716
Phenotype that is a defect in cell migration (GO:0016477). 'cell migration' is defined as: '$sub_GO:0016477'
phenotypic_class
FBC:DOS
Phenotype that is a defect in cell migration (GO:0016477). 'cell migration' is defined as: '$sub_GO:0016477'
increased cell growth
FBcv:0000717
Phenotype that is an increase in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
phenotypic_class
FBC:DOS
Phenotype that is an increase in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
decreased cell growth
FBcv:0000718
Phenotype that is an decrease in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
phenotypic_class
FBC:DOS
Phenotype that is an decrease in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
atrophy
2011-03-10T05:59:04Z
FBcv:0000719
Phenotype that is a decrease in size of an initially normally sized organ or tissue due to wasting away of cells.
djs93
phenotypic_class
FBC:DOS
Phenotype that is a decrease in size of an initially normally sized organ or tissue due to wasting away of cells.
jump response defective
2011-03-11T08:03:28Z
FBcv:0000720
Phenotype that is a defect or in or absence of a jump response (GO:0007630). The jump response in Drosophila is a reflex escape response that can be triggered by a number of signals including odor and light. Standard assays are commonly used to test odor and light induced jump response.
djs93
phenotypic_class
FlyBase:FBrf0187887
FlyBase:FBrf0191819
Phenotype that is a defect or in or absence of a jump response (GO:0007630). The jump response in Drosophila is a reflex escape response that can be triggered by a number of signals including odor and light. Standard assays are commonly used to test odor and light induced jump response.
mating behavior defective
FBcv:0000721
Phenotype that is a defect in mating behavior (GO:0007617). 'mating behavior' is defined as: '$sub_GO:0007617'
phenotypic_class
FBC:DOS
Phenotype that is a defect in mating behavior (GO:0007617). 'mating behavior' is defined as: '$sub_GO:0007617'
neoplasia
FBcv:0000723
Phenotype that consists of abnormal growth of a tissue or organ due to increased numbers of cells, but in which the affected tissue or organ does not maintain its normal form.
phenotypic_class
FBC:DOS
Phenotype that consists of abnormal growth of a tissue or organ due to increased numbers of cells, but in which the affected tissue or organ does not maintain its normal form.
hypoplasia
FBcv:0000724
Phenotype that is a reduction in size of an organ or tissue compared to wild-type due to reduced numbers of cells being produced during its development or growth.
This term should not be used where an organ or tissue is reduced in size due to the wasting away of existing cells.
phenotypic_class
FBC:DOS
Phenotype that is a reduction in size of an organ or tissue compared to wild-type due to reduced numbers of cells being produced during its development or growth.
oxidative stress response defective
FBcv:0000725
Phenotype that is a defect in response to oxidative stress (GO:0006979). 'response to oxidative stress' is defined as: '$sub_GO:0006979'
phenotypic_class
FBC:DOS
Phenotype that is a defect in response to oxidative stress (GO:0006979). 'response to oxidative stress' is defined as: '$sub_GO:0006979'
terminal phenotype
2011-09-13T02:31:53Z
Embryonic/larval segmentation phenotype that is the complete or partial loss of terminal regions of the embryo/larva: the acron, telson and immediately adjacent segments.
FBcv:0000734
djs93
phenotypic_class
Embryonic/larval segmentation phenotype that is the complete or partial loss of terminal regions of the embryo/larva: the acron, telson and immediately adjacent segments.
FBC:DOS
delayed aging
A phenotype in which the aging process (GO:0007568) is slower than in wild-type.
FBcv:0000791
phenotypic_class
A phenotype in which the aging process (GO:0007568) is slower than in wild-type.
FBC:DOC
premature aging
A phenotype in which the aging process (GO:0007568) is accelerated compared to wild-type.
FBcv:0000792
phenotypic_class
A phenotype in which the aging process (GO:0007568) is accelerated compared to wild-type.
FBC:DOC
endocytosis defective
FBcv:0001324
Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: '$sub_GO:0006897'
phenotypic_class
FBC:DOS
Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: '$sub_GO:0006897'
exocytosis defective
FBcv:0001325
phenotypic_class
phenotype
A defect in or loss of some anatomical structure or biological process compared to wild-type.
FBcv:0001347
The subclasses of this term classify Drosophila phenotypes into different common categories. They have been chosen by FlyBase to reflect phenotype terms most often reported by Drosophila researchers in the published literature.
phenotypic class
phenotypic_class
A defect in or loss of some anatomical structure or biological process compared to wild-type.
FBC:DOS
lethal - all die before end of P-stage
98
98
lethal - all die before end of pharate adult stage
As the P-Stage and the 'pharate adult stage' have the same end, there is no need for a seprate term for 'lethal - all die before end of pharate adult stage.
phenotypic_class
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to eclosion from the pupal case (the end of the P-stage).
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to eclosion from the pupal case (the end of the P-stage).
FBC:DOS
lethal - all die before end of first instar larval stage
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the first instar larval stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the first instar larval stage.
lethal - all die before end of larval stage
98
98
As the larval stage and third instar larval stage have the same end, there is no need for a separate term for 'lethal - all die before end of third instar larval stage'.
phenotypic_class
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the larval stage.
lethal - all die before end of third instar larval stage
FBC:DOS
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the larval stage.
lethal - all die before end of second instar larval stage
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the second instar larval stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the second instar larval stage.
increased mortality
5
5
A phenotype that is an increase in the rate of death in a population at any stage of life (during development or adulthood), over the rate seen in a wild type control population.
phenotypic_class
FBC:DOS
A phenotype that is an increase in the rate of death in a population at any stage of life (during development or adulthood), over the rate seen in a wild type control population.
lethal - all die during P-stage
98
98
A phenotype of a population that is the death of all animals in that population during the P-stage.
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the P-stage.
FBC:DOS
lethal - all die during first instar larval stage
98
98
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the first instar larval stage.
FBC:DOS
A phenotype of a population that is the death of all animals in that population during the first instar larval stage.
lethal - all die during larval stage
98
98
A phenotype of a population that is the death of all animals in that population during the larval stage.
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the larval stage.
FBC:DOS
lethal - all die during second instar larval stage
98
98
A phenotype of a population that is the death of all animals in that population during the second instar larval stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of all animals in that population during the second instar larval stage.
lethal - all die during third instar larval stage
98
98
A phenotype of a population that is the death of all animals in that population during the third instar larval stage.
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the third instar larval stage.
FBC:DOS
majority die during P-stage
50
50
A phenotype of a population that is the death of the majority of animals in that population during the P-stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of the majority of animals in that population during the P-stage.
majority die during first instar larval stage
50
50
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population during the first instar larval stage.
A phenotype of a population that is the death of the majority of animals in that population during the first instar larval stage.
FBC:DOS
majority die during larval stage
50
50
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population during the larval stage.
A phenotype of a population that is the death of the majority of animals in that population during the larval stage.
FBC:DOS
majority die during second instar larval stage
50
50
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population during the second instar larval stage.
A phenotype of a population that is the death of the majority of animals in that population during the second instar larval stage.
FBC:DOS
majority die during third instar larval stage
50
50
A phenotype of a population that is the death of the majority of animals in that population during the third instar larval stage.
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population during the third instar larval stage.
FBC:DOS
partially lethal
5
98
5
98
phenotypic_class
A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:KM
A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
increased mortality during development
5
5
A phenotype of a population that is the death a significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
some die during P-stage
5
5
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population during the P-stage.
A phenotype of a population that is the death a significant proportion of animals in that population during the P-stage.
FBC:DOS
some die during first instar larval stage
5
5
A phenotype of a population that is the death a significant proportion of animals in that population during the first instar larval stage.
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population during the first instar larval stage.
FBC:DOS
some die during second instar larval stage
5
5
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population during the second instar larval stage.
FBC:DOS
A phenotype of a population that is the death a significant proportion of animals in that population during the second instar larval stage.
some die during larval stage
5
5
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population during the larval stage.
FBC:DOS
A phenotype of a population that is the death a significant proportion of animals in that population during the larval stage.
some die during third instar larval stage
5
5
A phenotype of a population that is the death a significant proportion of animals in that population during the third instar larval stage.
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population during the third instar larval stage.
FBC:DOS
lethal - all die during pharate adult stage
98
98
A phenotype of a population that is the death of all animals in that population during the pharate adult stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of all animals in that population during the pharate adult stage.
lethal - all die before end of prepupal stage
98
98
phenotypic_class
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the prepupal stage.
FBC:DOS
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the prepupal stage.
lethal - all die before end of pupal stage
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the pupal stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the pupal stage.
lethal - all die during pupal stage
98
98
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the pupal stage.
FBC:DOS
A phenotype of a population that is the death of all animals in that population during the pupal stage.
lethal - all die during prepupal stage
98
98
A phenotype of a population that is the death of all animals in that population during the prepupal stage.
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the prepupal stage.
FBC:DOS
lethal - all die before end of embryonic stage
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the embryonic stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the embryonic stage.
lethal - all die during embryonic stage
98
98
phenotypic_class
A phenotype of a population that is the death of all animals in that population during the embryonic stage.
FBC:DOS
A phenotype of a population that is the death of all animals in that population during the embryonic stage.
Need to add local reflexivity to part_of for this to work. And really need to be using continuant part of.
98
majority die during pupal stage
50
50
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population during the pupal stage.
FBC:DOS
A phenotype of a population that is the death of the majority of animals in that population during the pupal stage.
majority die during prepupal stage
50
50
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population during the prepual stage.
A phenotype of a population that is the death of the majority of animals in that population during the prepual stage.
FBC:DOS
majority die during pharate adult stage
50
50
A phenotype of a population that is the death of the majority of animals in that population during the pharate adult stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death of the majority of animals in that population during the pharate adult stage.
majority die during embryonic stage
50
50
phenotypic_class
This term is agnostic about whether any survive to adulthood.
A phenotype of a population that is the death of the majority of animals in that population during the embryonic stage.
A phenotype of a population that is the death of the majority of animals in that population during the embryonic stage.
FBC:DOS
some die during pharate adult stage
5
5
A phenotype of a population that is the death a significant proportion of animals in that population during the pharate adult stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death a significant proportion of animals in that population during the pharate adult stage.
some die during pupal stage
5
5
A phenotype of a population that is the death a significant proportion of animals in that population during the pupal stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death a significant proportion of animals in that population during the pupal stage.
some die during prepupal stage
5
5
A phenotype of a population that is the death a significant proportion of animals in that population during the prepual stage.
phenotypic_class
FBC:DOS
A phenotype of a population that is the death a significant proportion of animals in that population during the prepual stage.
some die during embryonic stage
5
5
A phenotype of a population that is the death a significant proportion of animals in that population during the embryonic stage.
phenotypic_class
A phenotype of a population that is the death a significant proportion of animals in that population during the embryonic stage.
FBC:DOS
lethal - all die during immature adult stage
98
98
phenotypic_class
A phenotype of a population that is the death of all animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
A phenotype of a population that is the death of all animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
majority die during immature adult stage
50
50
phenotypic_class
A phenotype of a population that is the death of the majority of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
A phenotype of a population that is the death of the majority of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
some die during immature adult stage
5
5
A phenotype of a population that is the death of some significant number of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
A phenotype of a population that is the death of some significant number of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
developmental stage
2009-10-01T05:56:56Z
A temporal subdivision of a developmental process.
FBdv:00005259
FBdv:00007010
FlyBase_development_CV
djs93
A temporal subdivision of a developmental process.
FBC:DOS
embryonic stage
FBdv:00005289
FlyBase_development_CV
Temporal ordering number - 20.
The stage of the Drosophila life-cycle from fertilisation to hatching.
FBC:DOS
The stage of the Drosophila life-cycle from fertilisation to hatching.
larval stage
FBdv:00005336
FlyBase_development_CV
Temporal ordering number - 400.
The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
FBC:DOS
The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
first instar larval stage
FBdv:00005337
FlyBase_development_CV
L1
Temporal ordering number - 410.
The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
first instar larva
FlyBase:FBrf0007733
The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
second instar larval stage
FBdv:00005338
FlyBase_development_CV
L2
Temporal ordering number - 420.
The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
second instar larva
FlyBase:FBrf0007733
The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
third instar larval stage
FBdv:00005339
FlyBase_development_CV
L3
Temporal ordering number - 430.
The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
third instar larva
FlyBase:FBrf0007733
The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
prepupal stage
FBdv:00005342
FlyBase_development_CV
Temporal ordering number - 500.
The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
pupal stage
FBdv:00005349
FlyBase_development_CV
Temporal ordering number - 570. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head and expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.
The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
phanerocephalic pupa
FlyBase:FBrf0036849
FlyBase:FBrf0048355
The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
FlyBase:FBrf0036849
phanerocephalic pupa
adult stage
FBdv:00005369
FlyBase_development_CV
Temporal ordering number - 770.
The stage of the Drosophila life-cycle from eclosion to death.
FBC:DOS
The stage of the Drosophila life-cycle from eclosion to death.
adult stage A1
FBdv:00005370
FBdv:00005373
FlyBase_development_CV
Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
Temporal ordering number - 785. The time at which eclosed flies settle down for wing expansion can vary greatly. If they fail to find a suitable site then expansion can be delayed by several hours.
adult stage I
FlyBase:FBrf0049147
Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
adult stage A2
FBdv:00005371
FBdv:00005374
FlyBase_development_CV
Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
Temporal ordering number - 790.
adult stage II
FlyBase:FBrf0049147
Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
pharate adult stage
FBdv:00006011
FlyBase_development_CV
Temporal ordering number - 625.
The developing adult after pupal-adult apolysis , i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
FlyBase:FBrf0049147
The developing adult after pupal-adult apolysis , i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
adult stage A3
Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
FBdv:00005375
FBdv:00006012
FlyBase_development_CV
Temporal ordering number - 800.
adult stage III
Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
FlyBase:FBrf0049147
P-stage
2008-06-05T04:51:40Z
FBdv:00007001
FlyBase_development_CV
Temporal ordering number - 490. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head an expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.
The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
david
metamorphosis
pupal stage
FBC:DOS
The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
life stage
2009-10-01T05:59:22Z
A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilisation; hatching; pupal ecdysis; eclosion.
FBdv:00007012
FlyBase_development_CV
djs93
life cycle stage
A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilisation; hatching; pupal ecdysis; eclosion.
FBC:DOS
immature adult stage
2013-01-08T20:06:59Z
FBdv:00007025
FlyBase_development_CV
Temporal ordering number - 782.
The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
djs93
FBC:DOS
The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
mature adult stage
2013-01-10T13:03:54Z
FBdv:00007026
FlyBase_development_CV
Life stage from the end of adult stage A3, when tanning is complete, to death.
djs93
FBC:DOS
Life stage from the end of adult stage A3, when tanning is complete, to death.
reproduction
GO:0000003
GO:0019952
GO:0050876
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
Wikipedia:Reproduction
biological_process
reproductive physiological process
GOC:go_curators
GOC:isa_complete
GOC:jl
ISBN:0198506732
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
mitotic cell cycle
GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
Reactome:REACT_100451
Reactome:REACT_104035
Reactome:REACT_104195
Reactome:REACT_105856
Reactome:REACT_108233
Reactome:REACT_152
Reactome:REACT_28464
Reactome:REACT_28953
Reactome:REACT_33388
Reactome:REACT_53493
Reactome:REACT_79085
Reactome:REACT_84794
Reactome:REACT_85137
Reactome:REACT_85950
Reactome:REACT_90332
Reactome:REACT_90846
Reactome:REACT_96281
Reactome:REACT_97744
Reactome:REACT_98208
biological_process
Cell Cycle, Mitotic, Schizosaccharomyces pombe
Reactome:REACT_79085
Cell Cycle, Mitotic, Rattus norvegicus
Reactome:REACT_33388
Cell Cycle, Mitotic, Mycobacterium tuberculosis
Reactome:REACT_98208
Cell Cycle, Mitotic, Dictyostelium discoideum
Reactome:REACT_97744
Cell Cycle, Mitotic, Drosophila melanogaster
Reactome:REACT_96281
Cell Cycle, Mitotic, Homo sapiens
Reactome:REACT_152
Cell Cycle, Mitotic, Arabidopsis thaliana
Reactome:REACT_85950
Cell Cycle, Mitotic, Saccharomyces cerevisiae
Reactome:REACT_108233
Cell Cycle, Mitotic, Danio rerio
Reactome:REACT_105856
Cell Cycle, Mitotic, Sus scrofa
Reactome:REACT_104035
Cell Cycle, Mitotic, Oryza sativa
Reactome:REACT_90846
Cell Cycle, Mitotic, Taeniopygia guttata
Reactome:REACT_100451
Cell Cycle, Mitotic, Canis familiaris
Reactome:REACT_104195
Cell Cycle, Mitotic, Xenopus tropicalis
Reactome:REACT_28464
GOC:mah
ISBN:0815316194
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
Reactome:69278
Cell Cycle, Mitotic, Caenorhabditis elegans
Reactome:REACT_84794
Cell Cycle, Mitotic, Gallus gallus
Reactome:REACT_85137
Cell Cycle, Mitotic, Mus musculus
Reactome:REACT_90332
Cell Cycle, Mitotic, Bos taurus
Reactome:REACT_28953
Cell Cycle, Mitotic, Plasmodium falciparum
Reactome:REACT_53493
cytokinesis
GO:0000910
GO:0007104
GO:0016288
GO:0033205
Note that when annotating eukaryotic species, mitotic or meiotic cytokinesis should always be specified for manual annotation and for prokaryotic species use 'FtsZ-dependent cytokinesis ; GO:0043093' or Cdv-dependent cytokinesis ; GO:0061639. Also, note that cytokinesis does not necessarily result in physical separation and detachment of the two daughter cells from each other.
Reactome:REACT_101918
Reactome:REACT_108805
Reactome:REACT_1932
Reactome:REACT_30667
Reactome:REACT_32636
Reactome:REACT_78494
Reactome:REACT_84722
Reactome:REACT_87726
Reactome:REACT_92849
Reactome:REACT_93374
Reactome:REACT_94382
Reactome:REACT_98952
Reactome:REACT_99118
The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.
Wikipedia:Cytokinesis
biological_process
cell cycle cytokinesis
cytokinesis involved in cell cycle
Mitotic Telophase /Cytokinesis, Mus musculus
Reactome:REACT_101918
Mitotic Telophase /Cytokinesis, Xenopus tropicalis
Reactome:REACT_87726
Mitotic Telophase /Cytokinesis, Rattus norvegicus
Reactome:REACT_98952
Mitotic Telophase /Cytokinesis, Canis familiaris
Reactome:REACT_93374
Mitotic Telophase /Cytokinesis, Drosophila melanogaster
Reactome:REACT_94382
Mitotic Telophase /Cytokinesis, Bos taurus
Reactome:REACT_32636
Mitotic Telophase /Cytokinesis, Schizosaccharomyces pombe
Reactome:REACT_30667
Mitotic Telophase /Cytokinesis, Danio rerio
Reactome:REACT_78494
Mitotic Telophase /Cytokinesis, Caenorhabditis elegans
Reactome:REACT_99118
Mitotic Telophase /Cytokinesis, Taeniopygia guttata
Reactome:REACT_92849
GOC:dph
GOC:tb
cytokinesis involved in cell cycle
Mitotic Telophase /Cytokinesis, Dictyostelium discoideum
Reactome:REACT_108805
Mitotic Telophase /Cytokinesis, Gallus gallus
Reactome:REACT_84722
GOC:mtg_cell_cycle
The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.
Mitotic Telophase /Cytokinesis, Homo sapiens
Reactome:REACT_1932
establishment of planar polarity
Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates.
GO:0001736
biological_process
establishment of planar cell polarity
Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates.
GOC:dph
morphogenesis of a polarized epithelium
GO:0001738
The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis.
biological_process
epithelial polarization
GOC:dph
epithelial polarization
GOC:dph
The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis.
morphogenesis of an epithelium
GO:0002009
The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
biological_process
epithelium morphogenesis
GOC:dph
GOC:jl
GOC:tb
ISBN:0198506732
The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
immune system process
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
GO:0002376
Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022.
Wikipedia:Immune_system
biological_process
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
GOC:add
GOC:mtg_15nov05
GO_REF:0000022
regionalization
GO:0003002
The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
biological_process
pattern formation
GOC:dph
GOC:isa_complete
The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
GOC:dph
pattern formation
developmental process involved in reproduction
A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring.
GO:0003006
biological_process
puberty
reproductive developmental process
GOC:dph
GOC:tb
reproductive developmental process
A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring.
GOC:dph
GOC:isa_complete
GOC:dph
puberty
system process
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
GO:0003008
biological_process
organ system process
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
GOC:mtg_cardio
cellular_component
GO:0005575
GO:0008372
NIF_Subcellular:sao-1337158144
NIF_Subcellular:sao1337158144
Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
cell or subcellular entity
cellular component
cellular_component
subcellular entity
GOC:go_curators
NIF_Subcellular:sao-1337158144
The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
NIF_Subcellular:nlx_subcell_100315
subcellular entity
cell
GO:0005623
NIF_Subcellular:sao1813327414
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
Wikipedia:Cell_(biology)
cellular_component
GOC:go_curators
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
nucleobase-containing compound metabolic process
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0006139
GO:0055134
biological_process
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism
nucleobase, nucleoside and nucleotide metabolic process
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GOC:ai
GOC:dph
GOC:tb
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
DNA metabolic process
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
DNA metabolism
GO:0006259
GO:0055132
biological_process
cellular DNA metabolism
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
ISBN:0198506732
DNA repair
GO:0006281
Reactome:REACT_102034
Reactome:REACT_106650
Reactome:REACT_107446
Reactome:REACT_107692
Reactome:REACT_107752
Reactome:REACT_108864
Reactome:REACT_108881
Reactome:REACT_108903
Reactome:REACT_109956
Reactome:REACT_115642
Reactome:REACT_115836
Reactome:REACT_127
Reactome:REACT_216
Reactome:REACT_29531
Reactome:REACT_29636
Reactome:REACT_78051
Reactome:REACT_82907
Reactome:REACT_83608
Reactome:REACT_83660
Reactome:REACT_84835
Reactome:REACT_85522
Reactome:REACT_86513
Reactome:REACT_86902
Reactome:REACT_88201
Reactome:REACT_88946
Reactome:REACT_89524
Reactome:REACT_90385
Reactome:REACT_90952
Reactome:REACT_91094
Reactome:REACT_91330
Reactome:REACT_91442
Reactome:REACT_91576
Reactome:REACT_92707
Reactome:REACT_93704
Reactome:REACT_94204
Reactome:REACT_94769
Reactome:REACT_95050
Reactome:REACT_95158
Reactome:REACT_96052
Reactome:REACT_96452
Reactome:REACT_99277
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Wikipedia:DNA_repair
biological_process
DNA Damage Reversal, Mus musculus
Reactome:REACT_99277
DNA Repair, Canis familiaris
Reactome:REACT_90385
DNA Damage Reversal, Taeniopygia guttata
Reactome:REACT_106650
DNA Repair, Homo sapiens
Reactome:REACT_216
Fanconi Anemia Pathway in DNA repair, Gallus gallus
Reactome:REACT_115836
DNA Damage Reversal, Rattus norvegicus
Reactome:REACT_108864
DNA Damage Reversal, Mycobacterium tuberculosis
Reactome:REACT_88946
DNA Repair, Danio rerio
Reactome:REACT_86902
DNA Repair, Taeniopygia guttata
Reactome:REACT_92707
DNA Repair, Mycobacterium tuberculosis
Reactome:REACT_86513
DNA repair, Gallus gallus
Reactome:REACT_115642
DNA Damage Reversal, Oryza sativa
Reactome:REACT_91576
DNA Repair, Saccharomyces cerevisiae
Reactome:REACT_93704
DNA Damage Reversal, Drosophila melanogaster
Reactome:REACT_89524
DNA Repair, Oryza sativa
Reactome:REACT_82907
DNA Damage Reversal, Dictyostelium discoideum
Reactome:REACT_84835
DNA Repair, Arabidopsis thaliana
Reactome:REACT_107446
DNA Damage Reversal, Arabidopsis thaliana
Reactome:REACT_90952
DNA Damage Reversal, Caenorhabditis elegans
Reactome:REACT_83608
DNA Repair, Caenorhabditis elegans
Reactome:REACT_91442
DNA Repair, Mus musculus
Reactome:REACT_85522
DNA Damage Reversal, Staphylococcus aureus N315
Reactome:REACT_29636
DNA Repair, Schizosaccharomyces pombe
Reactome:REACT_94769
DNA Damage Reversal, Bos taurus
Reactome:REACT_108881
DNA Damage Reversal, Gallus gallus
Reactome:REACT_107692
DNA Repair, Rattus norvegicus
Reactome:REACT_91094
DNA Repair, Drosophila melanogaster
Reactome:REACT_88201
DNA Repair, Escherichia coli
Reactome:REACT_83660
DNA Repair, Staphylococcus aureus N315
Reactome:REACT_102034
DNA Repair, Plasmodium falciparum
Reactome:REACT_107752
DNA Damage Reversal, Homo sapiens
Reactome:REACT_127
DNA Repair, Bos taurus
Reactome:REACT_91330
DNA Damage Reversal, Danio rerio
Reactome:REACT_96452
DNA Repair, Sus scrofa
Reactome:REACT_94204
DNA Damage Reversal, Xenopus tropicalis
Reactome:REACT_95158
DNA Repair, Dictyostelium discoideum
Reactome:REACT_96052
DNA Damage Reversal, Canis familiaris
Reactome:REACT_78051
DNA Damage Reversal, Saccharomyces cerevisiae
Reactome:REACT_29531
DNA Repair, Gallus gallus
Reactome:REACT_109956
DNA Damage Reversal, Sus scrofa
Reactome:REACT_95050
DNA Repair, Xenopus tropicalis
Reactome:REACT_108903
PMID:11563486
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
cellular aromatic compound metabolic process
GO:0006725
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
aromatic compound metabolism
aromatic hydrocarbon metabolic process
aromatic hydrocarbon metabolism
biological_process
GOC:ai
ISBN:0198506732
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
nitrogen compound metabolic process
GO:0006807
Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node.
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
biological_process
nitrogen compound metabolism
CHEBI:51143
GOC:go_curators
GOC:jl
ISBN:0198506732
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium.
transport
GO:0006810
GO:0015457
GO:0015460
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
auxiliary transport protein activity
biological_process
small molecule transport
solute:solute exchange
transport accessory protein activity
GOC:mah
auxiliary transport protein activity
GOC:mah
transport accessory protein activity
GOC:dph
GOC:jl
GOC:mah
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
exocytosis
A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process in which most molecules are secreted from eukaryotic cells.
GO:0006887
GO:0016194
GO:0016195
Wikipedia:Exocytosis
biological_process
nonselective vesicle exocytosis
vesicle exocytosis
A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process in which most molecules are secreted from eukaryotic cells.
GOC:mah
ISBN:0716731363
endocytosis
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
GO:0006897
GO:0016193
GO:0016196
Wikipedia:Endocytosis
biological_process
nonselective vesicle endocytosis
plasma membrane invagination
vesicle endocytosis
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
GOC:mah
ISBN:0198506732
ISBN:0716731363
movement of cell or subcellular component
GO:0006928
Note that in GO cellular components include whole cells (cell is_a cellular component).
The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
biological_process
cell movement
cellular component motion
cellular component movement
GOC:dph
GOC:jl
cellular component motion
GOC:dgh
GOC:dph
GOC:jl
GOC:mlg
The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
response to stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0006950
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
response to abiotic stress
response to biotic stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
immune response
Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
GO:0006955
This term was improved by GO_REF:0000022. It was redefined and moved.
biological_process
Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
GOC:add
GOC:mtg_15nov05
GO_REF:0000022
response to osmotic stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
GO:0006970
biological_process
osmotic response
osmotic stress response
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
GOC:jl
cellular response to DNA damage stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
DNA damage response
GO:0006974
GO:0034984
biological_process
cellular DNA damage response
response to DNA damage stimulus
response to genotoxic stress
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GOC:go_curators
response to oxidative stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GO:0006979
biological_process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GOC:jl
PMID:12115731
cell cycle
GO:0007049
The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
Wikipedia:Cell_cycle
biological_process
cell-division cycle
GOC:go_curators
GOC:mtg_cell_cycle
The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
endomitotic cell cycle
A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
GO:0007113
Note that this term should not be confused with 'abortive mitotic cell cycle ; GO:0033277'. Although abortive mitosis is sometimes called endomitosis, GO:0033277 refers to a process in which a mitotic spindle forms and chromosome separation begins.
Wikipedia:Mitosis#Endomitosis
biological_process
endomitosis
A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
GOC:curators
GOC:dos
GOC:expert_vm
cell adhesion
GO:0007155
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
Wikipedia:Cell_adhesion
biological_process
cell adhesion molecule activity
GOC:hb
GOC:pf
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
establishment of tissue polarity
Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
GO:0007164
biological_process
Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
GOC:jid
multicellular organismal development
GO:0007275
Note that this term was 'developmental process'.
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
biological_process
GOC:dph
GOC:ems
GOC:isa_complete
GOC:tb
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
pattern specification process
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
GO:0007389
biological_process
pattern biosynthesis
pattern formation
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
GOC:go_curators
GOC:isa_complete
ISBN:0521436125
sex determination
Any process that establishes and transmits the specification of sexual status of an individual organism.
GO:0007530
Wikipedia:Sex-determination_system
biological_process
Any process that establishes and transmits the specification of sexual status of an individual organism.
ISBN:0198506732
dosage compensation
Compensating for the two-fold variation in X:autosome chromosome ratios between sexes by a global activation or inactivation of all, or most of, genes on one or both of the X chromosomes.
GO:0007549
Wikipedia:Dosage_compensation
biological_process
Compensating for the two-fold variation in X:autosome chromosome ratios between sexes by a global activation or inactivation of all, or most of, genes on one or both of the X chromosomes.
GOC:ems
ISBN:0140512888
PMID:11498577
eclosion
GO:0007562
The emergence of an adult insect from a pupa case.
Wikipedia:Pupa#Emergence
biological_process
GOC:dgh
GOC:dos
GOC:mah
ISBN:0198600461
The emergence of an adult insect from a pupa case.
aging
A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700).
GO:0007568
GO:0016280
Wikipedia:Aging
ageing
biological_process
A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700).
GOC:PO_curators
response to nutrient
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
GO:0007584
biological_process
nutritional response pathway
response to nutrients
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
GOC:go_curators
sensory perception
GO:0007600
The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
Wikipedia:Perception
biological_process
GOC:ai
GOC:dph
The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
sensory perception of sound
GO:0007605
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
Wikipedia:Hearing_(sense)
biological_process
hearing
perception of sound
GOC:ai
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
sensory perception of chemical stimulus
GO:0007606
The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
biological_process
chemosensory perception
GOC:ai
The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
sensory perception of smell
GO:0007608
The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
Wikipedia:Olfaction
biological_process
olfaction
scent perception
sense of smell
smell perception
GOC:ai
The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
http://www.onelook.com/
behavior
GO:0007610
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
Wikipedia:Behavior
behavioral response to stimulus
behaviour
behavioural response to stimulus
biological_process
GOC:ems
GOC:jl
ISBN:0395448956
PMID:20160973
The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
learning or memory
GO:0007611
The acquisition and processing of information and/or the storage and retrieval of this information over time.
biological_process
GOC:jid
PMID:8938125
The acquisition and processing of information and/or the storage and retrieval of this information over time.
learning
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
GO:0007612
Wikipedia:Learning
biological_process
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
ISBN:0582227089
ISBN:0721662544
memory
GO:0007613
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
Wikipedia:Memory
biological_process
GOC:curators
ISBN:0582227089
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
http://www.onelook.com/
mating behavior
GO:0007617
The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
Wikipedia:Mating_behaviour
biological_process
mating behaviour
GOC:ai
GOC:dph
The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
mating
GO:0007618
The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
biological_process
GOC:jl
ISBN:0387520546
The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
courtship behavior
GO:0007619
The behavioral interactions between organisms for the purpose of attracting sexual partners.
biological_process
courtship behaviour
GOC:ai
GOC:dph
The behavioral interactions between organisms for the purpose of attracting sexual partners.
rhythmic behavior
GO:0007622
The specific behavior of an organism that recur with measured regularity.
biological_process
rhythmic behavioral response to stimulus
rhythmic behaviour
rhythmic behavioural response to stimulus
GOC:jl
GOC:pr
The specific behavior of an organism that recur with measured regularity.
circadian rhythm
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GO:0007623
GO:0050895
Wikipedia:Circadian_rhythm
biological_process
circadian process
circadian response
response to circadian rhythm
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GOC:bf
GOC:go_curators
grooming behavior
GO:0007625
The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
biological_process
grooming behaviour
GOC:jl
GOC:pr
The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
locomotory behavior
GO:0007626
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
behavior via locomotion
biological_process
locomotion in response to stimulus
locomotory behavioral response to stimulus
locomotory behaviour
locomotory behavioural response to stimulus
GOC:dph
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
jump response
GO:0007630
The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus.
biological_process
GOC:jid
ISBN:0198606907
The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus.
feeding behavior
Behavior associated with the intake of food.
GO:0007631
See also the biological process term 'behavior ; GO:0007610'.
Wikipedia:List_of_feeding_behaviours
behavioral response to food
behavioural response to food
biological_process
drinking
eating
feeding behaviour
Behavior associated with the intake of food.
GOC:mah
visual behavior
GO:0007632
The behavior of an organism in response to a visual stimulus.
behavioral response to visual stimulus
behavioural response to visual stimulus
biological_process
visual behaviour
GOC:jid
GOC:pr
The behavior of an organism in response to a visual stimulus.
optokinetic behavior
GO:0007634
The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
biological_process
optokinetic behaviour
GOC:jid
GOC:pr
The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
http://www.mercksource.com
chemosensory behavior
Behavior that is dependent upon the sensation of chemicals.
GO:0007635
behavioral response to chemical stimulus
behavioural response to chemical stimulus
biological_process
chemosensory behaviour
Behavior that is dependent upon the sensation of chemicals.
GOC:go_curators
proboscis extension reflex
GO:0007637
The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a sugar stimulus.
behavioral response to sugar stimulus, proboscis extension
biological_process
proboscis extension in response to sugar stimulus
FB:FBrf0044924
GOC:jid
The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a sugar stimulus.
male courtship behavior
GO:0008049
GO:0016542
The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
biological_process
male courtship behaviour
GOC:mtg_sensu
GOC:pr
The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
eclosion rhythm
GO:0008062
The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
biological_process
PMID:11715043
The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO:0000004
GO:0007582
GO:0008150
Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
Wikipedia:Biological_process
biological process
biological_process
physiological process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GOC:go_curators
GOC:isa_complete
metabolic process
GO:0008152
Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Wikipedia:Metabolism
biological_process
metabolic process resulting in cell growth
metabolism
metabolism resulting in cell growth
GOC:go_curators
ISBN:0198547684
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cell death
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as "apoptotic bodies"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo.
GO:0008219
This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide) show that cell death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Also, if experimental data suggest that a gene product influences cell death indirectly, rather than being involved in the death process directly, consider annotating to a 'regulation' term.
accidental cell death
biological_process
necrosis
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as "apoptotic bodies"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo.
GOC:mah
GOC:mtg_apoptosis
adult locomotory behavior
GO:0008344
Locomotory behavior in a fully developed and mature organism.
See also the biological process term 'locomotory behavior ; GO:0007626'.
adult locomotory behaviour
biological_process
GOC:ai
Locomotory behavior in a fully developed and mature organism.
response to temperature stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
GO:0009266
biological_process
response to thermal stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
GOC:hb
response to radiation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
GO:0009314
Note that 'radiation' refers to electromagnetic radiation of any wavelength.
biological_process
response to electromagnetic radiation stimulus
response to radiation stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
GOC:jl
Wikipedia:Electromagnetic_radiation
response to heat
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GO:0006951
GO:0009408
biological_process
response to heat shock
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GOC:lr
response to cold
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GO:0009409
biological_process
freezing tolerance
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GOC:lr
response to light stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
GO:0009416
biological_process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
GOC:go_curators
ISBN:0582227089
energy taxis
GO:0009453
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
biological_process
energytaxis
taxis in response to energy source
GOC:jl
PMID:11029423
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
response to external stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
GO:0009605
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
response to environmental stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
GOC:hb
response to wounding
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GO:0002245
GO:0009611
biological_process
physiological response to wounding
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GOC:go_curators
response to abiotic stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
GO:0009628
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
response to abiotic stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
GOC:hb
response to gravity
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
GO:0009629
biological_process
response to gravitational stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
GOC:hb
photoperiodism
Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
GO:0009648
Wikipedia:Photoperiodism
biological_process
response to day length
response to night length
response to photoperiod
Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
GOC:jid
GOC:pj
ISBN:0582015952
ISBN:0697037754
ISBN:0709408862
entrainment of circadian clock
GO:0009649
The synchronization of a circadian rhythm to environmental time cues such as light.
biological_process
regulation of circadian rhythm phase
GOC:jid
The synchronization of a circadian rhythm to environmental time cues such as light.
anatomical structure morphogenesis
GO:0009653
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
Wikipedia:Morphogenesis
anatomical structure organization
biological_process
embryogenesis and morphogenesis
morphogenesis
GOC:go_curators
ISBN:0521436125
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
axis specification
GO:0009798
The establishment, maintenance and elaboration of a pattern along a line or around a point.
axis determination
biological_process
GOC:dph
GOC:go_curators
GOC:isa_complete
The establishment, maintenance and elaboration of a pattern along a line or around a point.
tissue development
GO:0009888
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
Wikipedia:Histogenesis
biological_process
histogenesis
histogenesis and organogenesis
ISBN:0471245208
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
dorsal/ventral axis specification
GO:0009950
The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
biological_process
dorsal-ventral axis specification
dorsal/ventral axis determination
dorsoventral axis specification
GOC:mah
dorsal-ventral axis specification
GOC:dph
dorsal/ventral axis determination
GOC:mah
dorsoventral axis specification
GOC:dph
GOC:go_curators
GOC:tb
The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
dorsal/ventral pattern formation
GO:0009953
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
biological_process
dorsal-ventral pattern formation
dorsal/ventral pattern specification
dorsoventral pattern formation
GOC:mah
dorsal-ventral pattern formation
GOC:mah
dorsoventral pattern formation
GOC:dph
GOC:go_curators
GOC:isa_complete
GOC:tb
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008151
GO:0009987
GO:0050875
biological_process
cell growth and/or maintenance
cell physiology
cellular physiological process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
GOC:isa_complete
response to extracellular stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
GO:0009991
biological_process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
GOC:go_curators
membrane invagination
GO:0010324
The infolding of a membrane, resulting in formation of a vesicle.
biological_process
GOC:tb
The infolding of a membrane, resulting in formation of a vesicle.
gene expression
GO:0010467
Reactome:REACT_100537
Reactome:REACT_101147
Reactome:REACT_101952
Reactome:REACT_105649
Reactome:REACT_108313
Reactome:REACT_29068
Reactome:REACT_34240
Reactome:REACT_71
Reactome:REACT_78136
Reactome:REACT_78959
Reactome:REACT_79662
Reactome:REACT_85241
Reactome:REACT_85359
Reactome:REACT_86357
Reactome:REACT_89816
Reactome:REACT_91657
Reactome:REACT_91965
Reactome:REACT_93586
Reactome:REACT_93968
Reactome:REACT_94814
Reactome:REACT_98256
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Wikipedia:Gene_expression
biological_process
Gene Expression, Schizosaccharomyces pombe
Reactome:REACT_94814
Gene Expression, Drosophila melanogaster
Reactome:REACT_105649
Gene Expression, Xenopus tropicalis
Reactome:REACT_100537
Gene Expression, Plasmodium falciparum
Reactome:REACT_79662
Gene Expression, Mycobacterium tuberculosis
Reactome:REACT_89816
GOC:dph
GOC:tb
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Gene Expression, Danio rerio
Reactome:REACT_101147
Gene Expression, Escherichia coli
Reactome:REACT_29068
Gene Expression, Homo sapiens
Reactome:REACT_71
Gene Expression, Oryza sativa
Reactome:REACT_85241
Gene Expression, Canis familiaris
Reactome:REACT_86357
Gene Expression, Arabidopsis thaliana
Reactome:REACT_91657
Gene Expression, Saccharomyces cerevisiae
Reactome:REACT_98256
Gene Expression, Bos taurus
Reactome:REACT_93968
Gene Expression, Dictyostelium discoideum
Reactome:REACT_93586
Gene Expression, Caenorhabditis elegans
Reactome:REACT_108313
Gene Expression, Taeniopygia guttata
Reactome:REACT_78959
Gene Expression, Rattus norvegicus
Reactome:REACT_91965
Gene Expression, Staphylococcus aureus N315
Reactome:REACT_34240
Gene Expression, Gallus gallus
Reactome:REACT_85359
Gene Expression, Mus musculus
Reactome:REACT_78136
Gene Expression, Sus scrofa
Reactome:REACT_101952
regulation of gene expression
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GO:0010468
This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that regulates the level, stability or availabiliy of mRNA for translation and thereby regulates the rate of production of the encoded protein via translation.
Wikipedia:Regulation_of_gene_expression
biological_process
regulation of gene product expression
regulation of protein expression
GOC:curators
regulation of gene product expression
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
GOC:curators
regulation of protein expression
regulation of cell death
Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
GO:0010941
biological_process
Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
GOC:dph
GOC:tb
cellular component organization
A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0016043
GO:0044235
GO:0071842
biological_process
cell organisation
cell organization and biogenesis
cellular component organisation at cellular level
cellular component organisation in other organism
cellular component organization at cellular level
cellular component organization in other organism
GOC:mah
cell organization and biogenesis
A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GOC:ai
GOC:jl
GOC:mah
GOC:mah
cellular component organisation in other organism
GOC:mah
cellular component organisation at cellular level
cell growth
GO:0016049
GO:0048591
The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
biological_process
cell expansion
cellular growth
growth of cell
metabolic process resulting in cell growth
metabolism resulting in cell growth
non-developmental cell growth
non-developmental growth of a unicellular organism
GOC:ai
The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GOC:mah
non-developmental cell growth
GOC:mah
non-developmental growth of a unicellular organism
vesicle-mediated transport
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0006899
GO:0016192
biological_process
nonselective vesicle transport
protein sorting along secretory pathway
vesicle trafficking
vesicle transport
vesicular transport
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GOC:ai
GOC:mah
ISBN:08789310662000
GOC:mah
vesicular transport
death
A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.
GO:0016265
This term should not be used for direct manual annotation. Instead, consider selecting a child term of GO:0008219 'cell death' or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
Wikipedia:Death
biological_process
A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.
GOC:mah
GOC:mtg_apoptosis
ISBN:0877797099
cell migration
GO:0016477
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
Wikipedia:Cell_migration
biological_process
GOC:cjm
GOC:dph
GOC:ems
GOC:pf
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
http://en.wikipedia.org/wiki/Cell_migration
male courtship behavior, veined wing vibration
GO:0016545
The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster.
biological_process
male courtship behavior, wing vibration
male courtship behaviour, veined wing vibration
male courtship behaviour, wing vibration
GOC:mtg_sensu
PMID:11092827
The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster.
reproductive behavior
GO:0019098
The specific behavior of an organism that is associated with reproduction.
biological_process
reproductive behaviour
GOC:jl
GOC:pr
The specific behavior of an organism that is associated with reproduction.
regulation of metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GO:0019222
biological_process
regulation of metabolism
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GOC:go_curators
sexual reproduction
A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
GO:0019953
Sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.
Wikipedia:Sexual_reproduction
biological_process
A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
GOC:jl
ISBN:0387520546
http://en.wikipedia.org/wiki/Sexual_reproduction
cell cycle process
GO:0022402
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
biological_process
GOC:isa_complete
GOC:mtg_cell_cycle
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
reproductive process
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
GO:0022414
biological_process
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
GOC:dph
GOC:isa_complete
biological adhesion
GO:0022610
The attachment of a cell or organism to a substrate or other organism.
biological_process
GOC:isa_complete
The attachment of a cell or organism to a substrate or other organism.
dormancy process
A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
GO:0022611
In plants and animals, dormancy may be a response to environmental conditions such as seasonality or extreme heat, drought, or cold. In plants, dormancy may involve the formation of dormant buds, and may be preceded by the senescence of plant parts such as leaves in woody plants or most of the shoot system in herbaceous perennials. The exit from dormancy in vascular plants is marked by resumed growth of buds and/or growth of vascular cambium.
biological_process
multicellular organism dormancy process
spore dormancy process
GOC:PO_curators
spore dormancy process
A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
GOC:PO_curators
GOC:isa_complete
PO_REF:00009
sleep
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
GO:0030431
Wikipedia:Sleep
biological_process
diapause
dormancy
lethargus
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
ISBN:0192800981
adult behavior
Behavior in a fully developed and mature organism.
GO:0030534
See also the biological process term 'behavior ; GO:0007610'.
adult behavioral response to stimulus
adult behaviour
adult behavioural response to stimulus
biological_process
Behavior in a fully developed and mature organism.
GOC:mah
ISBN:0877797099
response to nutrient levels
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
GO:0031667
biological_process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
GOC:mah
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
GO:0032501
GO:0050874
biological_process
organismal physiological process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
GOC:curators
GOC:dph
GOC:isa_complete
GOC:tb
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
GO:0032502
biological_process
development
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
GOC:isa_complete
multicellular organism reproduction
GO:0032504
The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
biological_process
GOC:isa_complete
GOC:jid
The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
secretion by cell
GO:0032940
The controlled release of a substance by a cell.
Wikipedia:Secretion
biological_process
cellular secretion
GOC:mah
The controlled release of a substance by a cell.
multicellular organismal reproductive behavior
GO:0033057
The specific behavior of an organism that is associated with reproduction in a multicellular organism.
biological_process
reproductive behavior in a multicellular organism
GOC:curators
reproductive behavior in a multicellular organism
GOC:mtg_MIT_16mar07
GOC:pr
The specific behavior of an organism that is associated with reproduction in a multicellular organism.
cellular response to stress
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0033554
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
multicellular organismal response to stress
Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GO:0033555
biological_process
Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
cellular nitrogen compound metabolic process
GO:0034641
Reactome:REACT_102000
Reactome:REACT_103710
Reactome:REACT_107293
Reactome:REACT_108179
Reactome:REACT_109042
Reactome:REACT_13
Reactome:REACT_28699
Reactome:REACT_29108
Reactome:REACT_32429
Reactome:REACT_33347
Reactome:REACT_34326
Reactome:REACT_55564
Reactome:REACT_77741
Reactome:REACT_82379
Reactome:REACT_86268
Reactome:REACT_90299
Reactome:REACT_91959
Reactome:REACT_93580
Reactome:REACT_95666
Reactome:REACT_98086
Reactome:REACT_99241
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
biological_process
cellular nitrogen compound metabolism
Metabolism of amino acids and derivatives, Dictyostelium discoideum
Reactome:REACT_98086
Metabolism of amino acids and derivatives, Mus musculus
Reactome:REACT_33347
Metabolism of amino acids and derivatives, Plasmodium falciparum
Reactome:REACT_91959
Metabolism of amino acids and derivatives, Caenorhabditis elegans
Reactome:REACT_29108
Metabolism of amino acids and derivatives, Canis familiaris
Reactome:REACT_95666
Metabolism of amino acids and derivatives, Taeniopygia guttata
Reactome:REACT_77741
Metabolism of amino acids and derivatives, Staphylococcus aureus N315
Reactome:REACT_34326
Metabolism of amino acids and derivatives, Xenopus tropicalis
Reactome:REACT_108179
Metabolism of amino acids and derivatives, Sus scrofa
Reactome:REACT_109042
Metabolism of amino acids and derivatives, Homo sapiens
Reactome:REACT_13
Metabolism of amino acids and derivatives, Escherichia coli
Reactome:REACT_103710
GOC:mah
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
Metabolism of amino acids and derivatives, Gallus gallus
Reactome:REACT_55564
Metabolism of amino acids and derivatives, Saccharomyces cerevisiae
Reactome:REACT_28699
Metabolism of amino acids and derivatives, Rattus norvegicus
Reactome:REACT_32429
Metabolism of amino acids and derivatives, Drosophila melanogaster
Reactome:REACT_86268
Metabolism of amino acids and derivatives, Arabidopsis thaliana
Reactome:REACT_107293
Metabolism of amino acids and derivatives, Bos taurus
Reactome:REACT_82379
Metabolism of amino acids and derivatives, Mycobacterium tuberculosis
Reactome:REACT_102000
Metabolism of amino acids and derivatives, Schizosaccharomyces pombe
Reactome:REACT_99241
Metabolism of amino acids and derivatives, Danio rerio
Reactome:REACT_93580
Metabolism of amino acids and derivatives, Oryza sativa
Reactome:REACT_90299
hatching behavior
GO:0035187
The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
biological_process
hatching behaviour
GOC:pr
PMID:10436051
The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
hatching
GO:0035188
The emergence of an immature organism from a protective structure.
biological_process
GOC:dgh
GOC:isa_complete
ISBN:0198612001
The emergence of an immature organism from a protective structure.
circadian mating behavior
GO:0035648
The fluctuation in mating behavior that occurs over an approximately 24 hour cycle.
biological_process
circadian mating behaviour
circadian mating rhythm
GOC:bf
circadian mating behaviour
GOC:bf
GOC:dos
PMID:11470898
PMID:17276917
The fluctuation in mating behavior that occurs over an approximately 24 hour cycle.
GOC:dos
circadian mating rhythm
growth
GO:0040007
GO:0048590
See also the biological process term 'cell growth ; GO:0016049'.
The increase in size or mass of an entire organism, a part of an organism or a cell.
biological_process
growth pattern
non-developmental growth
GOC:bf
GOC:ma
The increase in size or mass of an entire organism, a part of an organism or a cell.
GOC:mah
non-developmental growth
locomotion
GO:0040011
Self-propelled movement of a cell or organism from one location to another.
biological_process
GOC:dgh
Self-propelled movement of a cell or organism from one location to another.
regulation of gene expression, epigenetic
Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
GO:0040029
biological_process
Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
PMID:10521337
PMID:11498582
wound healing
GO:0042060
The series of events that restore integrity to a damaged tissue, following an injury.
Wikipedia:Wound_healing
biological_process
GOC:bf
PMID:15269788
The series of events that restore integrity to a damaged tissue, following an injury.
response to chemical
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
GO:0042221
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
response to chemical stimulus
response to chemical substance
GOC:dos
response to chemical stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
GOC:jl
taxis
GO:0042330
The directed movement of a motile cell or organism in response to an external stimulus.
Wikipedia:Taxis
biological_process
directed movement in response to stimulus
GOC:jl
ISBN:0192801023
The directed movement of a motile cell or organism in response to an external stimulus.
phototaxis
GO:0042331
GO:0046953
The directed movement of a motile cell or organism in response to light.
Wikipedia:Phototaxis
biological_process
phototactic behavior
phototactic behaviour
taxis in response to light
GOC:jl
ISBN:0192800981
The directed movement of a motile cell or organism in response to light.
gravitaxis
GO:0042332
GO:0048062
The directed movement of a motile cell or organism in response to gravity.
biological_process
geotactic behavior
geotactic behaviour
geotaxis
gravitactic behavior
gravitactic behaviour
taxis in response to gravitational stimulus
taxis in response to gravity
GOC:jid
GOC:jl
The directed movement of a motile cell or organism in response to gravity.
response to starvation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
GO:0042594
biological_process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
GOC:go_curators
regulation of circadian rhythm
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
GO:0042752
biological_process
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
GOC:dph
GOC:jl
GOC:tb
thermotaxis
GO:0043052
The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
Wikipedia:Thermotaxis
biological_process
taxis in response to temperature stimulus
GOC:cab1
The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
WB_REF:cgc467
entrainment of circadian clock by photoperiod
GO:0043153
The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
biological_process
photoentrainment of circadian clock
GOC:jl
The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
PMID:10217146
photoentrainment of circadian clock
macromolecule metabolic process
GO:0043170
GO:0043283
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
biological_process
biopolymer metabolic process
macromolecule metabolism
GOC:mtg_chebi_dec09
biopolymer metabolic process
CHEBI:33694
GOC:mah
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
cellular metabolic process
GO:0044237
The chemical reactions and pathways by which individual cells transform chemical substances.
biological_process
cellular metabolism
intermediary metabolism
GOC:go_curators
The chemical reactions and pathways by which individual cells transform chemical substances.
GOC:mah
intermediary metabolism
primary metabolic process
GO:0044238
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
biological_process
primary metabolism
GOC:go_curators
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
http://www.metacyc.org
cellular macromolecule metabolic process
GO:0034960
GO:0044260
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
biological_process
cellular biopolymer metabolic process
cellular macromolecule metabolism
CHEBI:33694
GOC:mah
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
GOC:mtg_chebi_dec09
cellular biopolymer metabolic process
single-organism process
A biological process that involves only one organism.
GO:0044699
biological_process
single organism process
A biological process that involves only one organism.
GOC:jl
single organism reproductive process
A biological process that directly contributes to the process of producing new individuals, involving a single organism.
GO:0044702
biological_process
A biological process that directly contributes to the process of producing new individuals, involving a single organism.
GOC:jl
multi-organism reproductive process
A biological process that directly contributes to the process of producing new individuals, involving another organism.
GO:0044703
biological_process
A biological process that directly contributes to the process of producing new individuals, involving another organism.
GOC:jl
single-organism reproductive behavior
GO:0044704
The specific behavior of an organism that is associated with reproduction involving a single organism.
biological_process
GOC:jl
GOC:pr
The specific behavior of an organism that is associated with reproduction involving a single organism.
multi-organism reproductive behavior
GO:0044705
The specific behavior of an organism that is associated with reproduction involving another organism of the same or different species.
biological_process
GOC:jl
GOC:pr
The specific behavior of an organism that is associated with reproduction involving another organism of the same or different species.
multi-multicellular organism process
A multicellular organism process which involves another multicellular organism of the same or different species.
GO:0044706
biological_process
A multicellular organism process which involves another multicellular organism of the same or different species.
GOC:jl
single-multicellular organism process
A biological process occurring within a single, multicellular organism.
GO:0044707
biological_process
A biological process occurring within a single, multicellular organism.
GOC:jl
single-organism behavior
GO:0044708
The specific behavior of a single organism in response to external or internal stimuli.
biological_process
GOC:jl
GOC:pr
The specific behavior of a single organism in response to external or internal stimuli.
single-organism metabolic process
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
GO:0044710
biological_process
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
GOC:jl
single-organism cellular process
Any process that is carried out at the cellular level, occurring within a single organism.
GO:0044763
biological_process
Any process that is carried out at the cellular level, occurring within a single organism.
GOC:jl
single-organism transport
GO:0044765
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving a single organism.
biological_process
GOC:jl
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving a single organism.
single-organism developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
GO:0044767
biological_process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
GOC:jl
male courtship behavior, veined wing generated song production
GO:0045433
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
biological_process
male courtship behavior, song production
male courtship behaviour, song production
male courtship behaviour, veined wing generated song production
GOC:mtg_sensu
PMID:11092827
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
locomotor rhythm
GO:0045475
The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
biological_process
circadian locomotor activity rhythm
GOC:go_curators
The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
heterocycle metabolic process
GO:0046483
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
biological_process
heterocycle metabolism
CHEBI:5686
ISBN:0198506732
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
secretion
GO:0046903
The controlled release of a substance by a cell or a tissue.
biological_process
GOC:ai
The controlled release of a substance by a cell or a tissue.
negative gravitaxis
GO:0048060
GO:0048063
The directed movement of a motile cell or organism away from the source of gravity.
biological_process
negative geotactic behavior
negative geotactic behaviour
negative gravitactic behavior
negative gravitactic behaviour
negative taxis in response to gravity
negative taxis in response to gravitytaxis in response to gravitational stimulus
GOC:jid
The directed movement of a motile cell or organism away from the source of gravity.
male courtship behavior, veined wing extension
GO:0048065
The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster.
biological_process
male courtship behavior, wing extension
male courtship behaviour, veined wing extension
male courtship behaviour, wing extension
GOC:jid
GOC:mtg_sensu
The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster.
response to pain
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
GO:0048265
GO:0048267
biological_process
physiological response to pain
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
GOC:jid
PMID:10203867
PMID:12723742
PMID:12843304
Wikipedia:Pain
rhythmic process
Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
GO:0048511
biological_process
rhythm
Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
GOC:jid
circadian behavior
GO:0048512
The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
biological_process
circadian rhythm behavior
GOC:bf
GOC:go_curators
GOC:pr
The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
multicellular organismal reproductive process
GO:0048609
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
biological_process
organismal reproductive process
reproductive process in a multicellular organism
GOC:curators
reproductive process in a multicellular organism
GOC:dph
GOC:jid
GOC:tb
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
GOC:curators
organismal reproductive process
obsolete cellular process involved in reproduction
GO:0048610
OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
This process was made obsolete because we felt it not provide a particularly useful classification, and its very broad logical definition caused regular problems in our inference pipelines.
biological_process
cellular process involved in reproduction
reproductive cellular process
true
GOC:dph
GOC:tb
reproductive cellular process
GOC:dph
GOC:jid
OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
tissue morphogenesis
GO:0048729
The process in which the anatomical structures of a tissue are generated and organized.
biological_process
GOC:dph
GOC:jid
The process in which the anatomical structures of a tissue are generated and organized.
anatomical structure development
GO:0048856
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
This term was added by GO_REF:0000021.
biological_process
development of an anatomical structure
GOC:mtg_15jun06
GO_REF:0000021
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
cell motility
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
GO:0048870
biological_process
cell locomotion
cell movement
movement of a cell
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
GOC:dgh
GOC:dph
GOC:isa_complete
GOC:mlg
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0050789
GO:0050791
biological_process
regulation of physiological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:ai
GOC:go_curators
regulation of cellular process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0050794
GO:0051244
biological_process
regulation of cellular physiological process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
neurological system process
A organ system process carried out by any of the organs or tissues of neurological system.
GO:0050877
biological_process
neurophysiological process
pan-neural process
A organ system process carried out by any of the organs or tissues of neurological system.
GOC:ai
GOC:mtg_cardio
multicellular organismal movement
Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.
GO:0050879
biological_process
Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.
GOC:dph
GOC:mtg_muscle
GOC:tb
cognition
GO:0050890
The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
Wikipedia:Cognition
biological_process
ISBN:0721619908
The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
http://www.onelook.com/
response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GO:0050896
GO:0051869
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
physiological response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GOC:ai
GOC:bf
sensory perception of taste
GO:0050909
The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
Wikipedia:Taste
biological_process
gustation
sense of taste
taste
taste perception
GOC:ai
The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
http://www.onelook.com/
sensory perception of mechanical stimulus
GO:0050954
The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
biological_process
chemi-mechanical coupling
mechanosensory perception
perception of mechanical stimulus
GOC:ai
The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
sensory perception of touch
GO:0050975
The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).
Wikipedia:Touch
biological_process
perception of touch
tactile sense
taction
tactition
GOC:ai
The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).
localization
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location.
GO:0051179
biological_process
establishment and maintenance of cellular component location
establishment and maintenance of localization
establishment and maintenance of position
establishment and maintenance of substance location
establishment and maintenance of substrate location
localisation
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location.
GOC:ai
GOC:mah
localisation
establishment of localization
GO:0051234
The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location.
biological_process
establishment of localisation
GOC:ai
The directed movement of a cell, substance or cellular entity, such as a protein complex or organelle, to a specific location.
GOC:mah
establishment of localisation
cell division
GO:0051301
Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division.
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
Wikipedia:Cell_division
biological_process
GOC:di
GOC:go_curators
GOC:pr
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
meiotic cell cycle
GO:0051321
Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
Wikipedia:Meiosis
biological_process
meiosis
GOC:ai
Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
cellular localization
A localization process that takes place at the cellular level; as a result of a cellular localization process, a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell.
GO:0051641
biological_process
cellular localisation
establishment and maintenance of cellular localization
establishment and maintenance of localization in cell or cell membrane
intracellular localization
localization within cell
A localization process that takes place at the cellular level; as a result of a cellular localization process, a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell.
GOC:ai
GOC:mah
GOC:mah
cellular localisation
establishment of localization in cell
GO:0051649
The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell.
biological_process
establishment of cellular localization
establishment of intracellular localization
establishment of localisation in cell
establishment of localization within cell
positioning within cell
GOC:dph
GOC:tb
establishment of cellular localization
GOC:ai
GOC:dph
GOC:tb
The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell.
GOC:mah
establishment of localisation in cell
localization of cell
Any process in which a cell is transported to, and/or maintained in, a specific location.
GO:0051674
biological_process
cell localization
establishment and maintenance of cell localization
establishment and maintenance of localization of cell
localisation of cell
Any process in which a cell is transported to, and/or maintained in, a specific location.
GOC:ai
GOC:mah
localisation of cell
multi-organism process
A biological process which involves another organism of the same or different species.
GO:0051704
GO:0051706
biological_process
interaction between organisms
physiological interaction between organisms
physiological interaction with other organism
A biological process which involves another organism of the same or different species.
GOC:jl
multi-organism behavior
Any process in which an organism has a behavioral effect on another organism of the same or different species.
GO:0023032
GO:0044709
GO:0051705
behavioral interaction between organisms
behavioral interaction with other organism
behavioral signaling
behavioral signalling
behavioural interaction between organisms
behavioural interaction with other organism
biological_process
GOC:mah
behavioral signalling
Any process in which an organism has a behavioral effect on another organism of the same or different species.
GOC:ai
cellular response to stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
GO:0051716
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
biological_process
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
GOC:bf
GOC:jl
behavioral response to nutrient
Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
GO:0051780
behavioural response to nutrient
biological_process
Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
GOC:ai
entry into diapause
GO:0055115
The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
Wikipedia:Diapause
biological_process
GOC:ds
GOC:jid
GOC:mah
The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
entry into reproductive diapause
GO:0055116
The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
biological_process
GOC:ds
GOC:jid
GOC:mah
The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
reflex
An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
GO:0060004
Wikipedia:Reflex
biological_process
An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
GOC:dph
ISBN:087797099
male mating behavior
GO:0060179
The specific behavior of a male organism that is associated with reproduction.
biological_process
GOC:dph
GOC:pr
GOC:tb
The specific behavior of a male organism that is associated with reproduction.
regulation of macromolecule metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0060255
biological_process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:dph
GOC:tb
flight
GO:0060361
Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement.
biological_process
GOC:dph
Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement.
epithelium development
GO:0060429
The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.
biological_process
GOC:dph
GOC:mtg_lung
The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.
membrane organization
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO:0016044
GO:0061024
Reactome:REACT_101524
Reactome:REACT_103082
Reactome:REACT_11123
Reactome:REACT_29278
Reactome:REACT_32337
Reactome:REACT_33741
Reactome:REACT_34084
Reactome:REACT_78213
Reactome:REACT_78288
Reactome:REACT_83546
Reactome:REACT_86557
Reactome:REACT_87431
Reactome:REACT_88307
Reactome:REACT_91154
Reactome:REACT_93714
Reactome:REACT_95586
Reactome:REACT_96516
Reactome:REACT_97881
biological_process
cellular membrane organisation
cellular membrane organization
membrane organisation
membrane organization and biogenesis
Membrane Trafficking, Taeniopygia guttata
Reactome:REACT_32337
GOC:mah
membrane organization and biogenesis
Membrane Trafficking, Drosophila melanogaster
Reactome:REACT_87431
Membrane Trafficking, Mus musculus
Reactome:REACT_88307
Membrane Trafficking, Saccharomyces cerevisiae
Reactome:REACT_91154
Membrane Trafficking, Arabidopsis thaliana
Reactome:REACT_86557
Membrane Trafficking, Plasmodium falciparum
Reactome:REACT_78213
GOC:curators
cellular membrane organisation
Membrane Trafficking, Canis familiaris
Reactome:REACT_96516
GOC:mah
membrane organisation
Membrane Trafficking, Caenorhabditis elegans
Reactome:REACT_34084
Membrane Trafficking, Gallus gallus
Reactome:REACT_95586
Membrane Trafficking, Sus scrofa
Reactome:REACT_29278
Membrane Trafficking, Rattus norvegicus
Reactome:REACT_97881
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GOC:dph
GOC:tb
Membrane Trafficking, Bos taurus
Reactome:REACT_33741
Membrane Trafficking, Oryza sativa
Reactome:REACT_83546
Membrane Trafficking, Dictyostelium discoideum
Reactome:REACT_101524
Membrane Trafficking, Homo sapiens
Reactome:REACT_11123
Membrane Trafficking, Schizosaccharomyces pombe
Reactome:REACT_103082
Membrane Trafficking, Xenopus tropicalis
Reactome:REACT_78288
Membrane Trafficking, Danio rerio
Reactome:REACT_93714
biological regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GO:0065007
biological_process
regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GOC:dph
GOC:isa_complete
GOC:mah
GOC:pr
GOC:vw
organism emergence from protective structure
GO:0071684
The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
biological_process
GOC:mah
The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
organic substance metabolic process
GO:0071704
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
biological_process
organic molecular entity metabolic process
organic molecular entity metabolism
organic substance metabolism
CHEBI:50860
GOC:mah
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
cellular component organization or biogenesis
A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0071840
GO:0071841
biological_process
cellular component organisation or biogenesis
cellular component organisation or biogenesis at cellular level
cellular component organization or biogenesis at cellular level
GOC:mah
cellular component organisation or biogenesis
GOC:mah
cellular component organisation or biogenesis at cellular level
A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GOC:mah
nucleic acid metabolic process
Any cellular metabolic process involving nucleic acids.
GO:0090304
biological_process
Any cellular metabolic process involving nucleic acids.
GOC:dph
GOC:tb
organic cyclic compound metabolic process
GO:1901360
The chemical reactions and pathways involving organic cyclic compound.
biological_process
organic cyclic compound metabolism
GOC:TermGenie
organic cyclic compound metabolism
GOC:TermGenie
The chemical reactions and pathways involving organic cyclic compound.
single-organism localization
A localization which involves only one organism.
GO:1902578
biological_process
single organism localization
A localization which involves only one organism.
GOC:jl
GO_REF:0000089
PMID:1234
GOC:TermGenie
single organism localization
quality
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
PATO:0000001
quality
trait
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
PATOC:GVG
color
A composite chromatic quality composed of hue, saturation and intensity parts.
PATO:0000014
quality
relative color
A composite chromatic quality composed of hue, saturation and intensity parts.
PATOC:GVG
frequency
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
PATO:0000044
quality
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
Wikipedia:http://en.wikipedia.org/wiki/frequency
biological sex
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
PATO:0000047
quality
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
MGED:MGED
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATO:0000051
quality
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATOC:GVG
shape
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATO:0000052
quality
relational shape quality
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATOC:GVG
trophic quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
PATO:0000056
nutritional quality
quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Trophic_level
qualitative
PATO:0000068
quality
deviation(from_normal)
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
PATO:0000069
quality
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
PATOC:GVG
count
PATO:0000070
The number of entities of this type that are part of the whole organism.
amount
count in organism
number
presence
presence or absence in organism
quality
quantitative
PATOC:GVG
The number of entities of this type that are part of the whole organism.
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
PATO:0000117
quality
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
WordNet:WordNet
position
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATO:0000140
location
placement
quality
relational spatial quality
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATOC:GVG
structure
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATO:0000141
quality
relational structural quality
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATOC:GVG
rate
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATO:0000161
quality
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATOC:melissa
viability
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
PATO:0000169
quality
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
PATOC:GVG
behavioral quality
An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
PATO:0000186
behavioral quality
behavioural quality
quality
An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
PATOC:GVG
coordination
A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.
PATO:0000188
quality
A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.
PATOC:GVG
fertility
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
PATO:0000274
quality
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
PATOC:GVG
female fertility
A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATO:0000277
quality
A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
male fertility
A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATO:0000279
quality
A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
increased frequency
A frequency which is relatively high.
PATO:0000380
frequent
high frequency
quality
A frequency which is relatively high.
PATOC:GVG
decreased frequency
A frequency which is relatively low.
PATO:0000381
infrequent
low frequency
quality
A frequency which is relatively low.
PATOC:GVG
female
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
PATO:0000383
quality
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
MGED:MGED
male
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
PATO:0000384
quality
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
MGED:MGED
auxotrophic
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
PATO:0000422
quality
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic
abnormal
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
PATO:0000460
aberrant
atypia
atypical
defective
quality
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
PATOC:GVG
absent
A quality denoting the lack of an entity.
PATO:0000462
absence
absent from organism
quality
A quality denoting the lack of an entity.
thefreedictionary.:thefreedictionary.
increased size
A size quality which is relatively high.
PATO:0000586
big
enlarged
great
large
quality
A size quality which is relatively high.
PATOC:GVG
decreased size
A size quality which is relatively low.
PATO:0000587
hypoplasia
quality
small
tiny
underdeveloped
A size quality which is relatively low.
PATOC:GVG
hyperplastic
A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.
PATO:0000644
hyperplasia
overdeveloped
quality
A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.
Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic
hypoplastic
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.
PATO:0000645
hypoplasia
quality
underdeveloped
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.
PATOC:GVG
lethal (sensu genetics)
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
PATO:0000718
quality
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
PATOC:GVG
viable
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
PATO:0000719
quality
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
PATOC:GVG
uncoordinated
A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.
PATO:0000770
quality
A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.
PATOC:GVG
female fertile
A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATO:0000888
quality
A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
male fertile
A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATO:0000891
quality
A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
female sterile
A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATO:0000892
female infertile
quality
A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
decreased rate
A rate which is relatively low.
PATO:0000911
quality
slow rate
A rate which is relatively low.
PATO:GVG
increased rate
A rate which is relatively high.
PATO:0000912
fast rate
high rate
quality
A rate which is relatively high.
PATO:GVG
fertile
A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATO:0000955
quality
A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
sterile
A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATO:0000956
quality
A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATO:0001018
quality
relational physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATOC:GVG
process quality
A quality which inheres in an process.
PATO:0001236
quality
quality of a process
quality of occurrent
quality of process
relational quality of occurrent
A quality which inheres in an process.
PATOC:GVG
physical object quality
A quality which inheres in a continuant.
PATO:0001241
monadic quality of a continuant
monadic quality of an object
monadic quality of continuant
multiply inhering quality of a physical entity
quality
quality of a continuant
quality of a single physical entity
quality of an object
quality of continuant
A quality which inheres in a continuant.
PATOC:GVG
electromagnetic (EM) radiation quality
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
PATO:0001291
quality
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation
optical quality
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
PATO:0001300
quality
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
PATOC:GVG
reproductive quality
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
PATO:0001434
quality
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
WordNet:WordNet
sensitivity of a process
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
PATO:0001457
quality
sensitivity of occurrent
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
PATOC:GVG
increased sensitivity of a process
A sensitivity of a process which is higher than normal or average.
PATO:0001551
high sensitivity of occurrent
increased sensitivity of occurrent
quality
A sensitivity of a process which is higher than normal or average.
PATO:GVG
decreased sensitivity of a process
A sensitivity of a process which is lower than normal or average.
PATO:0001552
decreased sensitivity of occurrent
low sensitivity of occurrent
quality
A sensitivity of a process which is lower than normal or average.
PATO:GVG
has number of
PATO:0001555
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
cardinality
extra or missing physical or functional parts
has or lacks parts of type
mereological quality
number
number of
quality
PATOC:CJM
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
lacking processual parts
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
PATO:0001558
quality
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
PATOC:GVG
extra or missing processual parts
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
PATO:0001564
quality
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
PATOC:GVG
atrophied
A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.
PATO:0001623
atrophic
quality
A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.
Wiikipedia:Wasting
Wikipedia:Atrophy
radiation quality
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
PATO:0001739
quality
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
PATOC:GVG
female semi-fertile
PATO:0001760
quality
male semi-fertile
PATO:0001761
quality
male semi-sterile
PATO:0001762
quality
female semi-sterile
PATO:0001763
quality
semi-lethal (sensu genetics)
A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.
PATO:0001768
quality
A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.
PATOC:CVC
positional polarity
A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.
PATO:0001769
cellular polarity
quality
A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.
PATOC:MAH
PATOC:MAH
cellular polarity
semi-viable
A viability quality inhering in a population by virtue of some of it's members' ability to survive.
PATO:0001770
quality
A viability quality inhering in a population by virtue of some of it's members' ability to survive.
PATOC:CVC
lack of fertility in offspring
A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.
PATO:0001862
grandchildless
quality
A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.
PATOC:GVG
phenotypic sex
PATO:0001894
quality
organismal quality
A quality that inheres in an entire organism or part of an organism.
PATO:0001995
quality
A quality that inheres in an entire organism or part of an organism.
PATOC:CJM
lacks parts or has fewer parts of type
PATO:0001999
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
loss of
quality
PATOC:CJM
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
has fewer parts of type
PATO:0002001
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
decreased number of
has decreased number of
has fewer physical parts of type
quality
PATOC:CJM
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
has extra parts of type
PATO:0002002
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
has extra parts of
has increased number of
having extra physical parts
having supernumerary physical parts
increased number of
quality
PATOC:CJM
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
neoplastic
A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.
PATO:0002011
quality
tumorous
A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.
PATOC:MAH
physical quality of a process
PATO:0002062
quality
altered number of
Having extra or fewer parts.
PATO:0002083
quality
Having extra or fewer parts.
PATOC:GVG
aplastic/hypoplastic
PATO:0002290
quality
increased quality
A quality that has a value that is increased compared to normal or average.
PATO:0002300
quality
A quality that has a value that is increased compared to normal or average.
PATOC:GVG
decreased quality
A quality that has a value that is decreased compared to normal or average.
PATO:0002301
quality
A quality that has a value that is decreased compared to normal or average.
PATOC:GVG
decreased process quality
A quality of a process that has a value that is decreased compared to normal or average.
PATO:0002302
quality
A quality of a process that has a value that is decreased compared to normal or average.
PATOC:GVG
decreased object quality
A quality of an object that has a value that is decreased compared to normal or average.
PATO:0002303
quality
A quality of an object that has a value that is decreased compared to normal or average.
PATOC:GVG
increased process quality
A quality of a process that has a value that is increased compared to normal or average.
PATO:0002304
quality
A quality of a process that has a value that is increased compared to normal or average.
PATOC:GVG
increased object quality
A quality of an object that has a value that is increased compared to normal or average.
PATO:0002305
quality
A quality of an object that has a value that is increased compared to normal or average.
PATOC:GVG
population
population of Drosophila
dependent continuant
population of cells