2017-07-05
temj2
FlyBase_miscellaneous_CV
OBO-Edit 2.3.1
Imports terms from http://purl.obolibrary.org/obo/go/2017-06-29/go-simple.owl; http://purl.obolibrary.org/obo/fbdv/2014-07-29/fbdv.owl
1.2
Includes Ontology(OntologyID(OntologyIRI(<http://www.semanticweb.org/ontologies/2010/5/Ontology1275387730635/timing_relations_for_occurrents.owl>) VersionIRI(<null>))) [Axioms: 115 Logical Axioms: 55]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/FBdv.owl>) VersionIRI(<null>))) [Axioms: 249 Logical Axioms: 70]
Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/fbcv_go_import.owl>) VersionIRI(<null>))) [Axioms: 2115 Logical Axioms: 294]
definition
OBO Foundry Uniquename
camcur
BrainName official abbreviation
BRAND NAME
EmbDevSlim
FORMULA
FlyTed temp subset for edit tracking purposes
Testis slim
INN
IUPAC NAME
InChI
InChIKey
terms for rd test ontology
SMILES
Abnormal/normal slim
Absent/present slim
Attribute slim
camcur
cell_quality
cur
warning of impending obsoletion
larval olfactory system
Relational slim: types of quality that require an additional entity in order to exist
Systematic synonym
Value slim
subset_property
subset_property
synonym_type_property
has_alternative_id
has_broad_synonym
database_cross_reference
has_exact_synonym
has_narrow_synonym
has_obo_format_version
has_obo_namespace
has_related_synonym
has_scope
in_subset
in_subset
shorthand
synonym
BFO:0000050
OBO_REL:part_of
part_of
external
part_of
part_of
part_of
OBO_REL:has_part
ends_before
X precedes Y iff: end(X) before_or_simultaneous_with start(Y)
precedes
djs93
2009-10-09T10:00:53Z
BFO:0000062
OBO_REL:preceded_by
proceeds
starts_after
preceded_by
preceded_by
X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)
preceded_by
RO:0000052
inheres_in
inheres_in
inheres_in
<=
Primitive instance level timing relation between events
before_or_simultaneous_with
t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)
simultaneous_with
t1 before t2 iff:= t1 before_or_simulataneous_with t2 and not (t1 simultaeous_with t2)
before
Perviously used http://purl.obolibrary.org/obo/RO_0002122 - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line.
during_which_ends
Previously had ID http://purl.obolibrary.org/obo/RO_0002124 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
encompasses
X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)
ends_after
RO:0002087
starts_at_end_of
starts_at_end_of
starts_at_end_of
X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)
immediately_preceded_by
Previously had ID http://purl.obolibrary.org/obo/RO_0002123 in test files in sandpit - but this seems to have been dropped from ro-edit.owl at some point. No re-use under this ID AFAIK, but leaving note here in case we run in to clashes down the line. Official ID now chosen from DOS ID range.
during_which_starts
starts_before
RO:0002090
ends_at_start_of
ends_at_start_of
ends_at_start_of
X immediately_precedes_Y iff: end(X) simultaneous_with start(Y)
immediately_precedes
X starts_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (start(X) before_or_simultaneous_with end(Y)). This relations will be used after 2013-05-21.
X happens_during Y iff: (start(Y) before_or_simultaneous_with start(X)) AND (end(X) before_or_simultaneous_with end(Y)). This relation will be used after 2013-05-21.
X ends_during Y iff: ((start(Y) before_or_simultaneous_with end(X)) AND end(X) before_or_simultaneous_with end(Y). This relation will be used after 2013-05-21.
RO:0002211
external
regulates
regulates
regulates
RO:0002212
external
negatively_regulates
negatively_regulates
negatively regulates
RO:0002213
external
positively_regulates
positively_regulates
positively regulates
has_member
has_age
has_role
has role
qualifier
temporary placeholder - this means that Obol could not infer the correct relation
qualifier
towards
temporary placeholder - may be placed in OBO_REL; with relational qualities, the additional argument is the 'towards' argument; eg sensitivity towards chlorine. Relation binding a relational quality or disposition to the relevant type of entity.
towards
0
100
has_increased_mortality_rate
time dimension = 0. An event is an instant.
event
Using BFO process boundary here, although I'd rather use a term name that didn't reference processes at all, which I see as distinct from stages.
process boundary
continuant
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
djs93
2009-10-01T05:56:28Z
BFO:0000003
FBdv:00007008
occurrent
An entity that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants.
BFOC:ANON
independent continuant
object aggregate
organism
CL:0000000
cell
An individual member of the species Drosophila melanogaster.
fly_anatomy.ontology
Drosophila
whole organism
FBbt:00000001
organism
An individual member of the species Drosophila melanogaster.
FBC:DOS
Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004).
fly_anatomy.ontology
FBbt:00004113
adult sense organ
Any sense organ (FBbt:00005155) that is part of some adult (FBbt:00003004).
FBC:auto_generated_definition
FlyBase:FBrf0007734
FlyBase:FBrf0031004
The compound eye is a light sensing organ composed of ommatidia.
fly_anatomy.ontology
compound eye
FBbt:00004508
eye
The compound eye is a light sensing organ composed of ommatidia.
FBC:gg
A division of the whole organism into specialized systems.
fly_anatomy.ontology
FBbt:00004856
organ system
A division of the whole organism into specialized systems.
FBC:gg
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
fly_anatomy.ontology
FBbt:00005093
nervous system
All the nerve centers and nerve fibers in the central, visceral and peripheral nervous systems.
ISBN:978-3-11-014898-5
Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
fly_anatomy.ontology
FBbt:00005155
sense organ
Multicellular anatomical structure with largely bona fide boundary that transduces some sensory stimulus to the nervous system.
FBC:DOS
A light sensitive sense organ.
fly_anatomy.ontology
FBbt:00005162
photoreceptor
A light sensitive sense organ.
FBC:gg
fly_anatomy.ontology
eo
es
sensillum
FBbt:00005168
external sensory organ
Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
fly_anatomy.ontology
FBbt:00007001
anatomical structure
Material anatomical entity that has inherent 3D shape, whose parts are all connected and that is generated by coordinated expression of the organism's own genome.
CARO:MAH
FBC:DOS
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
fly_anatomy.ontology
FBbt:00007002
cell
Anatomical structure that has as its parts a maximally connected cell compartment surrounded by a plasma membrane.
CARO:MAH
fly_anatomy.ontology
FBbt:00007016
material anatomical entity
An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue.
fly_anatomy.ontology
FBbt:00007230
compound cell cluster organ
An anatomical structure consisting of multiple cell cluster organs and which does not contain portions of tissue.
FBC:DOS
Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906).
compound sensillum
fly_anatomy.ontology
FBbt:00007234
compound sense organ
Any compound cell cluster organ (FBbt:00007230) that functions in (some) detection of stimulus involved in sensory perception (GO:0050906).
FBC:auto_generated_definition
fly_anatomy.ontology
FBbt:00007235
external compound sense organ
Anatomical structure that has multiple cells as parts.
fly_anatomy.ontology
FBbt:00100313
multicellular structure
Anatomical structure that has multiple cells as parts.
FBC:DOS
Anatomical entity which is part_of Drosophila melanogaster.
fly_anatomy.ontology
Drosophila
FBbt:10000000
anatomical entity
Anatomical entity which is part_of Drosophila melanogaster.
CARO:MAH
Phenotype that is a defect in thermotaxis (GO:0043052). 'thermotaxis' is defined as: '$sub_GO:0043052'
thermotaxis behaviour defective
phenotypic_class
FBcv:0000002
thermotaxis behavior defective
Phenotype that is a defect in thermotaxis (GO:0043052). 'thermotaxis' is defined as: '$sub_GO:0043052'
FBC:DOS
phenotypic_class
FBcv:0000006
male semi-fertile
phenotypic_class
FBcv:0000007
female semi-fertile
Genotype g1 is a modifier of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is significantly different from that caused by g2 alone.
phenotypic_class
variegation
FBcv:0000008
fbcvsubset_mgiribbons
modifier of variegation
Genotype g1 is a modifier of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is significantly different from that caused by g2 alone.
FBC:DOS
variegation
FBC:DOS
Phenotype that is the partial or full transformation of one or more segments (FBbt:00000003) or segmental appendages from one identity to another. For example, in antennapedia an antenna is partially or fully transformed into a leg.
phenotypic_class
FBcv:0000316
fbcvsubset_mgiribbons
homeotic
Phenotype that is the partial or full transformation of one or more segments (FBbt:00000003) or segmental appendages from one identity to another. For example, in antennapedia an antenna is partially or fully transformed into a leg.
FBC:DOS
Phenotype that is a defect in dorsal/ventral axis specification (GO:0009950). 'dorsal/ventral axis specification' is defined as: '$sub_GO:0009950'
phenotypic_class
dorsal-ventral polarity
FBcv:0000324
dorsal/ventral axis specification defective
Phenotype that is a defect in dorsal/ventral axis specification (GO:0009950). 'dorsal/ventral axis specification' is defined as: '$sub_GO:0009950'
FBC:DOS
dorsal-ventral polarity
FBC:DOS
A phenotype that is an expansion of the developing embryonic nervous system at the expense of developing ventral epidermis.
djs93
2011-09-13T02:42:10Z
phenotypic_class
FBcv:0000325
fbcvsubset_mgiribbons
Typically this is caused by and expansion of the population of neuroblasts at the expense of prospective epidermis, both of which originate in the ventral ectoderm.
neurogenic phenotype
A phenotype that is an expansion of the developing embryonic nervous system at the expense of developing ventral epidermis.
FlyBase:FBrf0040185
phenotypic_class
FBcv:0000347
phenotypic class
The canonical phenotype of a wild-type Drosophilid.
phenotypic_class
FBcv:0000348
wild-type
The canonical phenotype of a wild-type Drosophilid.
FBC:DOS
A phenotype that is survival to mature adulthood, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
FBcv:0000349
fbcvsubset_mgiribbons
Note, this term should not be used with the qualifier 'partially'. Use semi-viable or semi-lethal instead.
viable
A phenotype that is survival to mature adulthood, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
5
50
5
50
A phenotype of a population that is the death of some significant proportion of animals in that population, but less that half, prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
semi-viable
phenotypic_class
FBcv:0000350
partially lethal - majority live
A phenotype of a population that is the death of some significant proportion of animals in that population, but less that half, prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
FBcv:0000351
Note on usage: lethal is appropriate in cases where escaper adults are very rare. The lethal phase prior to becoming a mature adult may be further specified using children terms which specify stage.
lethal
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
50
98
50
98
A phenotype of a population that is the death of a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
semi-lethal
phenotypic_class
FBcv:0000352
Stages during which there is significant death prior to mature adulthood can be indicated using one or more stage qualifiers.
partially lethal - majority die
A phenotype of a population that is the death of a majority of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
FBC:NB
A phenotype that is a failure of mutant cells to survive.
phenotypic_class
FBcv:0000353
fbcvsubset_mgiribbons
Typically, this phenotype is assayed in clones of cells.
cell lethal
A phenotype that is a failure of mutant cells to survive.
FBC:DOS
A post-embryonic, macroscopic, anatomical phenotype.
phenotypic_class
FBcv:0000354
fbcvsubset_mgiribbons
visible
A post-embryonic, macroscopic, anatomical phenotype.
FBC:DOS
Phenotype that is a defect in eye color compared to wild-type.
eye colour defective
phenotypic_class
FBcv:0000355
eye color defective
Phenotype that is a defect in eye color compared to wild-type.
FBC:DOS
A phenotype that is a defect in body color compared to wild-type.
body colour defective
phenotypic_class
FBcv:0000356
body color defective
A phenotype that is a defect in body color compared to wild-type.
FBC:DOS
A phenotype that is a defect in the size of the whole body or some body part compared to wild-type.
phenotypic_class
FBcv:0000357
fbcvsubset_mgiribbons
size defective
A phenotype that is a defect in the size of the whole body or some body part compared to wild-type.
FBC:DOS
Phenotype that is a decrease in body size compared to identically raised wild-type controls.
phenotypic_class
FBcv:0000358
small body
Phenotype that is a decrease in body size compared to identically raised wild-type controls.
FBC:DOS
Phenotype that is a decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth - there may be fewer cells in an otherwise normal volume of tissue.
reduced cell number
phenotypic_class
FBcv:0000359
decreased cell number
Phenotype that is a decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth - there may be fewer cells in an otherwise normal volume of tissue.
FBC:DOS
Phenotype that is a decrease in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth of a tissue - there may be more cells in an otherwise normal volume of tissue.
reduced cell size
phenotypic_class
FBcv:0000360
Note that defects in cell size are not necessarily the result of defects in cell growth. A change in the rate of cell division in the absence of any change in cell growth rate can result in smaller or larger cells.
decreased cell size
Phenotype that is a decrease in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by decreased growth of a tissue - there may be more cells in an otherwise normal volume of tissue.
FBC:DOS
Phenotype that is an increase in body size compared to identically raised wild-type controls.
phenotypic_class
FBcv:0000361
large body
Phenotype that is an increase in body size compared to identically raised wild-type controls.
FBC:DOS
Phenotype that is an increase in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000362
This phenotype is not necessarily accompanied by overgrowth of a tissue - there may be more cells in an otherwise normal volume of tissue. It is not necessarily due to an increase in cell growth -it may be the result of an increase in the division rate at normal growth rates. It may not even be due to an increase in the cell division rate - a reduced rate of cell death while the division rate is normal could also achieve it.
increased cell number
Phenotype that is an increase in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is an increase in the size of cells compared to wild-type.
phenotypic_class
FBcv:0000363
May be due to an increase in the cell growth rate or to a reduced rate of cell division along with a normal rate of cell growth.
increased cell size
Phenotype that is an increase in the size of cells compared to wild-type.
FBC:DOS
A phenotype that is the inability to produce a zygote.
phenotypic_class
FBcv:0000364
fbcvsubset_mgiribbons
The cause of sterility may be physical or behavioral. Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead.
sterile
A phenotype that is the inability to produce a zygote.
FBC:DOS
A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.
phenotypic_class
FBcv:0000365
fbcvsubset_mgiribbons
semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced to below 50% of wild-type.
FBC:DOS
A phenotype that is the inability of females to mate and produce fertilized offspring.
phenotypic_class
FBcv:0000366
The cause of sterility may be physical or behavioral. Note: this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead.
female sterile
A phenotype that is the inability of females to mate and produce fertilized offspring.
FBC:DOS
A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.
phenotypic_class
FBcv:0000367
female semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced by females to below 50% of wild-type.
FBC:DOS
A phenotype of female sterility due to defects in the female germline.
female sterile germ-line-dependent
phenotypic_class
FBcv:0000368
female sterile germline-dependent
A phenotype of female sterility due to defects in the female germline.
FBC:DOS
A phenotype of female sterility due to defects in somatic cells of the ovary (FBbt:00006030), or of the products of these cells (such as eggshell).
phenotypic_class
FBcv:0000369
female sterile soma-dependent
A phenotype of female sterility due to defects in somatic cells of the ovary (FBbt:00006030), or of the products of these cells (such as eggshell).
FBC:DOS
A phenotype that is the inability of males to mate and produce fertilized offspring.
phenotypic_class
FBcv:0000370
The cause of sterility may be physical or behavioral. Note - this term should not be used with the qualifier 'partially' - use semi-sterile or semi-fertile instead.
male sterile
A phenotype that is the inability of males to mate and produce fertilized offspring.
FBC:DOS
A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.
phenotypic_class
FBcv:0000371
male semi-sterile
A phenotype that is a reduction in the proportion of fertilized eggs produced by males to below 50% of wild-type.
FBC:DOS
A phenotype of male sterility due to defects in the male germline.
male sterile germ-line-dependent
phenotypic_class
FBcv:0000372
male sterile germline-dependent
A phenotype of male sterility due to defects in the male germline.
FBC:DOS
A phenotype of male sterility due to defects in somatic cells of the testis (FBbt:00006031) or of the products of these cells.
phenotypic_class
FBcv:0000373
male sterile soma-dependent
A phenotype of male sterility due to defects in somatic cells of the testis (FBbt:00006031) or of the products of these cells.
FBC:DOS
A phenotype that is the ability to mate and as a result produce fertilized eggs.
phenotypic_class
FBcv:0000374
fbcvsubset_mgiribbons
Note, this term should not be used with the qualifier 'partially'. Use semi-sterile or semi-fertile instead.
fertile
A phenotype that is the ability to mate and as a result produce fertilized eggs.
FBC:DOS
Phenotype that is a reduction in the proportion of fertilized eggs produced to, but only to > 50% of wild-type.
phenotypic_class
FBcv:0000375
fbcvsubset_mgiribbons
semi-fertile
Phenotype that is a reduction in the proportion of fertilized eggs produced to, but only to > 50% of wild-type.
FBC:DOS
A phenotype that is the ability of males to mate and as a result produce fertilized eggs.
phenotypic_class
FBcv:0000376
Note - this term should not be used with the qualifier 'partially' - use male semi-sterile or male semi-fertile instead.
male fertile
A phenotype that is the ability of males to mate and as a result produce fertilized eggs.
FBC:DOS
A phenotype that is the ability of females to mate and as a result produce fertilized eggs.
phenotypic_class
FBcv:0000377
Note - this term should not be used with the qualifier 'partially' - use female semi-sterile or female semi-fertile instead.
female fertile
A phenotype that is the ability of females to mate and as a result produce fertilized eggs.
FBC:DOS
A phenotype in which all offspring are sterile. Typically, this is due to maternal effect sterility resulting from defects in pole cell development.
phenotypic_class
FBcv:0000378
fbcvsubset_mgiribbons
grandchildless
A phenotype in which all offspring are sterile. Typically, this is due to maternal effect sterility resulting from defects in pole cell development.
ISBN:978-0-87969-321-3
Genotype g1 is an enhancer of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is greater than that caused by g2 alone.
phenotypic_class
FBcv:0000379
Typically, g2 is a chromosomal aberration or an insertion.
enhancer of variegation
Genotype g1 is an enhancer of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is greater than that caused by g2 alone.
FBC:DOS
Genotype g1 is a non-enhancer of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not greater than that caused by g2 alone.
phenotypic_class
FBcv:0000380
non-enhancer of variegation
Genotype g1 is a non-enhancer of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not greater than that caused by g2 alone.
FBC:DOS
Genotype g1 is a suppressor of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is less than that caused by to g2 alone.
phenotypic_class
FBcv:0000381
Typically, g2 is a chromosomal aberration or an insertion.
suppressor of variegation
Genotype g1 is a suppressor of variegation if, and only if, some genotype g2 has a variegated phenotype and the degree of variegation caused by g1g2 is less than that caused by to g2 alone.
FBC:DOS
Genotype g1 is a non-suppressor of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not less than that caused by g2 alone.
phenotypic_class
FBcv:0000382
non-suppressor of variegation
Genotype g1 is a non-suppressor of variegation of the phenotype due to genotype g2 if, and only if, g2 has a variegated phenotype and the degree of variegation caused by g1g2 is not less than that caused by g2 alone.
FBC:DOS
A phenotype that is the inability to synthesize some organic compound that can be synthesized by wild-type animals, and that is required for normal growth and/or development.
phenotypic_class
FBcv:0000383
auxotroph
A phenotype that is the inability to synthesize some organic compound that can be synthesized by wild-type animals, and that is required for normal growth and/or development.
http://en.wikipedia.org/wiki/Auxotrophic
Phenotype that is a defect in aging (GO:0007568). 'aging' is defined as: '$sub_GO:0007568'
phenotypic_class
FBcv:0000384
fbcvsubset_mgiribbons
aging defective
Phenotype that is a defect in aging (GO:0007568). 'aging' is defined as: '$sub_GO:0007568'
GOC:PO_curators
5
5
Phenotype that is a shorter adult life-span than wild-type.
increased adult mortality
phenotypic_class
FBcv:0000385
short lived
Phenotype that is a shorter adult life-span than wild-type.
FBC:DOS
Phenotype that is a longer adult life-span than wild-type.
phenotypic_class
FBcv:0000386
fbcvsubset_mgiribbons
long lived
Phenotype that is a longer adult life-span than wild-type.
FBC:DOS
behaviour defective
behavioural
phenotypic_class
behavioral
FBcv:0000387
fbcvsubset_mgiribbons
behavior defective
Phenotype that is a change in the strong tendency, seen in wild-type Drosophila melanogaster, to climb - a behavior otherwise known as negative gravitaxis (GO:0048060 ; movement away from the source of gravity).
phenotypic_class
geotaxis behaviour defective
gravitaxis behavior defective
FBcv:0000388
fbcvsubset_mgiribbons
Note, this term should not be used when flies have climbing defects purely as a consequence of locomotion defects, use 'locomotor behavior defective' instead.
gravitaxis defective
Phenotype that is a change in the strong tendency, seen in wild-type Drosophila melanogaster, to climb - a behavior otherwise known as negative gravitaxis (GO:0048060 ; movement away from the source of gravity).
FBC:DOS
Phenotype that is a disposition to paralysis under conditions that do not cause paralysis in a wild-type animal. Paralysis is defined as an inability to exhibit `multicellular organismal movement` (GO:0050879)
phenotypic_class
FBcv:0000389
fbcvsubset_mgiribbons
paralytic
Phenotype that is a disposition to paralysis under conditions that do not cause paralysis in a wild-type animal. Paralysis is defined as an inability to exhibit `multicellular organismal movement` (GO:0050879)
FBC:DOS
A phenotype consisting of decreased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
phenotypic_class
FBcv:0000390
fbcvsubset_mgiribbons
hypoactive
A phenotype consisting of decreased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBC:DOS
A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis.
phenotypic_class
easily shocked
FBcv:0000391
bang sensitive
A phenotype exhibited following mechanical shock and consisting of a brief period of intense, uncoordinated motor activity (legs and wings flailing, abdomen coiling) followed by a prolonged period of paralysis.
FlyBase:FBrf0022877
easily shocked
FlyBase:FBrf0022877
A phenotype consisting of increased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
phenotypic_class
FBcv:0000392
fbcvsubset_mgiribbons
hyperactive
A phenotype consisting of increased frequency of `multicellular organismal movement` (GO:0050879) compared to wild-type.
FBC:DOS
Phenotype that is a defect in response to pain (GO:0048265). 'response to pain' is defined as: '$sub_GO:0048265'
phenotypic_class
FBcv:0000393
pain response defective
Phenotype that is a defect in response to pain (GO:0048265). 'response to pain' is defined as: '$sub_GO:0048265'
FBC:DOS
Phenotype that is a defect in circadian rhythm (GO:0007623). 'circadian rhythm' is defined as: '$sub_GO:0007623'
phenotypic_class
FBcv:0000394
fbcvsubset_mgiribbons
circadian rhythm defective
Phenotype that is a defect in circadian rhythm (GO:0007623). 'circadian rhythm' is defined as: '$sub_GO:0007623'
FBC:DOS
Phenotype that is a defect in locomotor rhythm (GO:0045475). 'locomotor rhythm' is defined as: '$sub_GO:0045475'
phenotypic_class
FBcv:0000395
locomotor rhythm defective
Phenotype that is a defect in locomotor rhythm (GO:0045475). 'locomotor rhythm' is defined as: '$sub_GO:0045475'
FBC:DOS
Phenotype that is a defect in eclosion rhythm (GO:0008062). 'eclosion rhythm' is defined as: '$sub_GO:0008062'
phenotypic_class
FBcv:0000396
eclosion rhythm defective
Phenotype that is a defect in eclosion rhythm (GO:0008062). 'eclosion rhythm' is defined as: '$sub_GO:0008062'
FBC:DOS
Phenotype that is a defect in learning (GO:0007612). 'learning' is defined as: '$sub_GO:0007612'
phenotypic_class
FBcv:0000397
learning defective
Phenotype that is a defect in learning (GO:0007612). 'learning' is defined as: '$sub_GO:0007612'
FBC:DOS
Phenotype that is a defect in memory (GO:0007613). 'memory' is defined as: '$sub_GO:0007613'
phenotypic_class
FBcv:0000398
memory defective
Phenotype that is a defect in memory (GO:0007613). 'memory' is defined as: '$sub_GO:0007613'
FBC:DOS
Phenotype that is a defect in courtship behavior (GO:0007619). 'courtship behavior' is defined as: '$sub_GO:0007619'
phenotypic_class
FBcv:0000399
courtship behavior defective
Phenotype that is a defect in courtship behavior (GO:0007619). 'courtship behavior' is defined as: '$sub_GO:0007619'
FBC:DOS
Phenotype that is a defect in mating (GO:0007618). 'mating' is defined as: '$sub_GO:0007618'
phenotypic_class
FBcv:0000400
fbcvsubset_mgiribbons
mating defective
Phenotype that is a defect in mating (GO:0007618). 'mating' is defined as: '$sub_GO:0007618'
FBC:DOS
Phenotype that is a defect in circadian mating behavior (GO:0035648). 'circadian mating behavior' is defined as: '$sub_GO:0035648'
phenotypic_class
FBcv:0000401
mating rhythm defective
Phenotype that is a defect in circadian mating behavior (GO:0035648). 'circadian mating behavior' is defined as: '$sub_GO:0035648'
FBC:DOS
Phenotype that is a defect in male courtship behavior, veined wing generated song production (GO:0045433). This is defined as '$sub_GO:0045433'
singing defective
song production defective
phenotypic_class
FBcv:0000402
song defective
Phenotype that is a defect in male courtship behavior, veined wing generated song production (GO:0045433). This is defined as '$sub_GO:0045433'
FBC:DOS
singing defective
FBC:SM
song production defective
FBC:SM
Phenotype that is a defect in chemosensory behavior (GO:0007635). 'chemosensory behavior' is defined as: '$sub_GO:0007635'.'
chemosensitive behaviour defective
phenotypic_class
FBcv:0000403
chemosensitive behavior defective
Phenotype that is a defect in chemosensory behavior (GO:0007635). 'chemosensory behavior' is defined as: '$sub_GO:0007635'.'
FBC:DOS
Phenotype that is a defect in sensory perception of smell (GO:0007608). 'sensory perception of smell' is defined as: '$sub_GO:0007608'
olfaction defective
phenotypic_class
FBcv:0000404
smell perception defective
Phenotype that is a defect in sensory perception of smell (GO:0007608). 'sensory perception of smell' is defined as: '$sub_GO:0007608'
FBC:DOS
Phenotype that is a defect in sensory perception of taste (GO:0050909). 'sensory perception of taste' is defined as: '$sub_GO:0050909'
gustation defective
taste defective
phenotypic_class
FBcv:0000405
taste perception defective
Phenotype that is a defect in sensory perception of taste (GO:0050909). 'sensory perception of taste' is defined as: '$sub_GO:0050909'
FBC:DOS
Phenotype that is a failure to exhibit proboscis extension reflex in response to a sugar stimulus via taste sensilla on the tarsus.
phenotypic_class
FBcv:0000406
tarsal response defective
Phenotype that is a failure to exhibit proboscis extension reflex in response to a sugar stimulus via taste sensilla on the tarsus.
FBC:DOS
Phenotype that is a defect in sensory perception of sound (GO:0007605). 'sensory perception of sound' is defined as: '$sub_GO:0007605'
phenotypic_class
auditory system defective
FBcv:0000407
auditory perception defective
Phenotype that is a defect in sensory perception of sound (GO:0007605). 'sensory perception of sound' is defined as: '$sub_GO:0007605'
FBC:DOS
Phenotype that is a defect in response to stress (GO:0006950). 'response to stress' is defined as: '$sub_GO:0006950'
environmental stress response defective
phenotypic_class
FBcv:0000408
fbcvsubset_mgiribbons
stress response defective
Phenotype that is a defect in response to stress (GO:0006950). 'response to stress' is defined as: '$sub_GO:0006950'
FBC:DOS
Phenotype that is a defect in response to osmotic stress (GO:0006970). 'response to osmotic stress' is defined as: '$sub_GO:0006970'
phenotypic_class
FBcv:0000409
osmotic stress response defective
Phenotype that is a defect in response to osmotic stress (GO:0006970). 'response to osmotic stress' is defined as: '$sub_GO:0006970'
FBC:DOS
Phenotype that is a defect in response to heat (GO:0009408). 'response to heat' is defined as: '$sub_GO:0009408'
phenotypic_class
FBcv:0000410
heat stress response defective
Phenotype that is a defect in response to heat (GO:0009408). 'response to heat' is defined as: '$sub_GO:0009408'
FBC:DOS
Phenotype that is a defect in visual behavior (GO:0007632). 'visual behavior' is defined as: '$sub_GO:0007632'
visual behaviour defective
phenotypic_class
FBcv:0000411
visual behavior defective
Phenotype that is a defect in visual behavior (GO:0007632). 'visual behavior' is defined as: '$sub_GO:0007632'
FBC:DOS
Phenotype that is a defect in optomotor response: a motor response during flight or walking that serves to stabilize both image formation on the retina and locomotor course.
optomotor behaviour defective
phenotypic_class
FBcv:0000412
optomotor response defective
Phenotype that is a defect in optomotor response: a motor response during flight or walking that serves to stabilize both image formation on the retina and locomotor course.
FBC:DOS
Phenotype that is a defect in phototaxis (GO:0042331). 'phototaxis' is defined as: '$sub_GO:0042331'
phenotypic_class
phototaxis behaviour defective
FBcv:0000413
fbcvsubset_mgiribbons
phototaxis defective
Phenotype that is a defect in phototaxis (GO:0042331). 'phototaxis' is defined as: '$sub_GO:0042331'
FBC:DOS
Phenotype that is a defect in locomotory behavior (GO:0007626). 'locomotory behavior' is defined as: '$sub_GO:0007626'
locomotor behaviour defective
phenotypic_class
FBcv:0000414
locomotor behavior defective
Phenotype that is a defect in locomotory behavior (GO:0007626). 'locomotory behavior' is defined as: '$sub_GO:0007626'
FBC:DOS
Phenotype that is a reduced ability to jump or a reduced jump response. This may be due to neurological or muscular defects.
phenotypic_class
FBcv:0000415
fbcvsubset_mgiribbons
jumping defective
Phenotype that is a reduced ability to jump or a reduced jump response. This may be due to neurological or muscular defects.
FBC:DOS
Phenotype that is a lack of normal co-ordination in locomotor activity.
phenotypic_class
FBcv:0000416
uncoordinated
Phenotype that is a lack of normal co-ordination in locomotor activity.
FBC:DOS
Phenotype that is a defect in flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
flight behaviour defective
phenotypic_class
FBcv:0000417
fbcvsubset_mgiribbons
This term is agnostic as to the causes of defects in flight. An animal's flight may be defective for mechanical, behavioral or sensory reasons.
flight defective
Phenotype that is a defect in flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
FBC:DOS
Phenotype that is the absence of flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
phenotypic_class
FBcv:0000418
This term is agnostic as to the causes of flightlessness. An animal may be flightless for mechanical or behavioral reasons.
flightless
Phenotype that is the absence of flight (GO:0060361). 'flight' is defined as: '$sub_GO:0060361'
FBC:DOS
Phenotype that is a defect in feeding behavior (GO:0007631). 'feeding behavior' is defined as: '$sub_GO:0007631'
feeding behaviour defective
phenotypic_class
FBcv:0000419
feeding behavior defective
Phenotype that is a defect in feeding behavior (GO:0007631). 'feeding behavior' is defined as: '$sub_GO:0007631'
FBC:DOS
Phenotype that is a defect in grooming behavior (GO:0007625). 'grooming behavior' is defined as: '$sub_GO:0007625'
grooming behaviour defective
phenotypic_class
FBcv:0000420
grooming behavior defective
Phenotype that is a defect in grooming behavior (GO:0007625). 'grooming behavior' is defined as: '$sub_GO:0007625'
FBC:DOS
Phenotype that is reduction in or loss of a stereotypical behavioral response to touch.
touch sensitivity defective
phenotypic_class
FBcv:0000421
This phenotype is commonly assayed by scoring larval avoidance responses following stroking of the thoracic segments (see Kernan et al., 1994). On its own, this is not sufficient evidence for a defect in sensory perception of touch, as motor defects can also cause this phenotype.
touch response defective
Phenotype that is reduction in or loss of a stereotypical behavioral response to touch.
FlyBase:FBrf0073546
Phenotype that is a defect in entrainment of circadian clock by photoperiod (GO:0043153), which is defined as: '$sub_GO:0043153'
phenotypic_class
FBcv:0000422
photoperiod response variant
Phenotype that is a defect in entrainment of circadian clock by photoperiod (GO:0043153), which is defined as: '$sub_GO:0043153'
FBC:DOS
Phenotype that is a defect in DNA repair (GO:0006281). 'DNA repair' is defined as: '$sub_GO:0006281'
phenotypic_class
FBcv:0000423
DNA repair defective
Phenotype that is a defect in DNA repair (GO:0006281). 'DNA repair' is defined as: '$sub_GO:0006281'
FBC:DOS
Phenotype that is a change in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type. This may be due to effects on the regulation of cell death (GO:0010941) or in cell death (GO:0008219) pathways themselves.
apoptosis defective
pcd defective
programmed cell death defective
phenotypic_class
FBcv:0000424
fbcvsubset_mgiribbons
cell death defective
Phenotype that is a change in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type. This may be due to effects on the regulation of cell death (GO:0010941) or in cell death (GO:0008219) pathways themselves.
FBC:DOS
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
pcd increase
programmed cell death increase
phenotypic_class
FBcv:0000425
increased cell death
Phenotype that is an increase in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a decrease in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
pcd decrease
programmed cell death decrease
phenotypic_class
FBcv:0000426
decreased cell death
Phenotype that is a decrease in the amount of cell death in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a defect in cell growth (GO:0016049). 'cell growth' is defined as: '$sub_GO:0016049'
phenotypic_class
FBcv:0000427
fbcvsubset_mgiribbons
Note that defects in cell size are not necessarily the result of defects in cell growth. A change in the rate of cell division in the absence of any change in cell growth rate can result in smaller or larger cells.
cell growth defective
Phenotype that is a defect in cell growth (GO:0016049). 'cell growth' is defined as: '$sub_GO:0016049'
FBC:DOS
Phenotype that is a defect in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000428
fbcvsubset_mgiribbons
cell size defective
Phenotype that is a defect in the size of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a defect in the shape (PATO:0000052) of some cell compared to wild-type.
phenotypic_class
FBcv:0000429
fbcvsubset_mgiribbons
cell shape defective
Phenotype that is a defect in the shape (PATO:0000052) of some cell compared to wild-type.
FBC:DOS
Phenotype that is a defect in the asymmetric distribution of components within a cell. For example an epithelial cell is 'cell polarity defective' if it lacks the normal asymmetric distribution of proteins or cell components such as junctions or villi along its apical-basal axis.
phenotypic_class
FBcv:0000430
fbcvsubset_mgiribbons
cell polarity defective
Phenotype that is a defect in the asymmetric distribution of components within a cell. For example an epithelial cell is 'cell polarity defective' if it lacks the normal asymmetric distribution of proteins or cell components such as junctions or villi along its apical-basal axis.
FBC:DOS
Phenotype that is a defect in meiotic cell cycle (GO:0051321). 'meiotic cell cycle' is defined as: '$sub_GO:0051321'
phenotypic_class
meiotic
FBcv:0000431
meiotic cell cycle defective
Phenotype that is a defect in meiotic cell cycle (GO:0051321). 'meiotic cell cycle' is defined as: '$sub_GO:0051321'
FBC:DOS
Phenotype that is a defect in mitotic cell cycle (GO:0000278). 'mitotic cell cycle' is defined as: '$sub_GO:0000278'
phenotypic_class
mitotic
FBcv:0000432
mitotic cell cycle defective
Phenotype that is a defect in mitotic cell cycle (GO:0000278). 'mitotic cell cycle' is defined as: '$sub_GO:0000278'
FBC:DOS
Phenotype that is a defect in cytokinesis (GO:0000910). 'cytokinesis' is defined as: '$sub_GO:0000910'
phenotypic_class
FBcv:0000433
cytokinesis defective
Phenotype that is a defect in cytokinesis (GO:0000910). 'cytokinesis' is defined as: '$sub_GO:0000910'
FBC:DOS
Phenotype that is a defect in the electrophysiological properties of some class of neurons, muscles or anatomical structure of the nervous system. Examples of these phenotypes at the neuron class level include defects in spontaneous or evoked excitatory junction potential. Examples at a more gross anatomical level include abnormal retinal electrophysiology (e.g.- measured by an electroretinogram).
phenotypic_class
FBcv:0000434
fbcvsubset_mgiribbons
neurophysiology defective
Phenotype that is a defect in the electrophysiological properties of some class of neurons, muscles or anatomical structure of the nervous system. Examples of these phenotypes at the neuron class level include defects in spontaneous or evoked excitatory junction potential. Examples at a more gross anatomical level include abnormal retinal electrophysiology (e.g.- measured by an electroretinogram).
FBC:DOS
Phenotype that is a defect in nervous system (FBbt:00005093). 'nervous system' is defined as: '$sub_FBbt:00005093'
phenotypic_class
FBcv:0000435
fbcvsubset_mgiribbons
neuroanatomy defective
Phenotype that is a defect in nervous system (FBbt:00005093). 'nervous system' is defined as: '$sub_FBbt:00005093'
FBC:DOS
Phenotype that is a defect in sex determination (GO:0007530). 'sex determination' is defined as: '$sub_GO:0007530'
phenotypic_class
FBcv:0000436
fbcvsubset_mgiribbons
sex-determination defective
Phenotype that is a defect in sex determination (GO:0007530). 'sex determination' is defined as: '$sub_GO:0007530'
FBC:DOS
FBcv:0000436
phenotypic_class
FBcv:0000437
This term was obsoleted because it was felt that the evidence provided in papers is not enough to annotate with this term. mc161014
dosage compensation defective
true
Phenotype that is a difference in electrophoretic migration of a gene product compared to wild-type.
phenotypic_class
FBcv:0000438
electrophoretic variant
Phenotype that is a difference in electrophoretic migration of a gene product compared to wild-type.
FBC:DOS
Phenotype that is a decreased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
phenotypic_class
FBcv:0000439
fbcvsubset_mgiribbons
chemical resistant
Phenotype that is a decreased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
FBC:DOS
Phenotype that is an increased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
phenotypic_class
FBcv:0000440
fbcvsubset_mgiribbons
chemical sensitive
Phenotype that is an increased sensitivity (compared to wild-type) to the toxic effects of some specified chemical. The phrase 'toxic effects' here refers to reversible effects such as inebriation and sedation as well as sustained damage, developmental defects and death.
FBC:DOS
Phenotype that is a decreased tendency for radiation exposure to cause toxic effects.
phenotypic_class
FBcv:0000441
fbcvsubset_mgiribbons
radiation resistant
Phenotype that is a decreased tendency for radiation exposure to cause toxic effects.
FBC:DOS
Phenotype that is an increased tendency for radiation exposure to cause toxic effects.
phenotypic_class
FBcv:0000442
fbcvsubset_mgiribbons
radiation sensitive
Phenotype that is an increased tendency for radiation exposure to cause toxic effects.
FBC:DOS
Dominant phenotype consisting of short slender bristles and delayed development. Homozygotes are cell lethal.
phenotypic_class
FBcv:0000443
The phenotype may be a general result of mutations in essential components of the protein synthesis pathway, as a number of Minutes encode ribosomal proteins. In an animal that is heterozygous for a Minute mutation, cells with two wild-type alleles of the affected gene have a growth advantage. Many developmental studies take advantage of this fact to give somatic clones a growth advantage. The term 'Minute' should not be used to annotate the resulting phenotypes.
Minute
Dominant phenotype consisting of short slender bristles and delayed development. Homozygotes are cell lethal.
FlyBase:FBrf0066905
Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.
hyperplastic
phenotypic_class
FBcv:0000444
hyperplasia
Phenotype that is an increase in size of a tissue or organ due to increased numbers of cells, where the affected tissue or organ maintains its normal form.
ISBN:9780198506737
Phenotype that is characterized by the formation of abnormal masses of tissue (tumors) as the result of neoplasia.
phenotypic_class
FBcv:0000445
tumorigenic
Phenotype that is characterized by the formation of abnormal masses of tissue (tumors) as the result of neoplasia.
FBC:DOS
Phenotype characterized by the formation of lumps of melanotic tissue inside the body in the absence of foreign bodies.
melanotic 'tumor'
phenotypic_class
FBcv:0000446
Melanotic capsules are formed around foreign bodies in wild-type animals as part of the immune response, for example as a protection against parasitoid wasps. Some, but not all melanotic mass phenotypes involve ectopic activation of this immune response. While melanotic masses are commonly referred to as melanotic tumors in the historical literature, this is a misnomer as they are rarely neoplastic.
melanotic mass phenotype
Phenotype characterized by the formation of lumps of melanotic tissue inside the body in the absence of foreign bodies.
FlyBase:FBrf0094387
FlyBase:FBrf0194475
Phenotype characterized by closely associated necrosis and melanization.
phenotypic_class
FBcv:0000447
melanotic necrosis
Phenotype characterized by closely associated necrosis and melanization.
FlyBase:FBrf0155704
Phenotype that is a defect in immune response (GO:0006955). 'immune response' is defined as: '$sub_GO:0006955'
phenotypic_class
FBcv:0000448
fbcvsubset_mgiribbons
immune response defective
Phenotype that is a defect in immune response (GO:0006955). 'immune response' is defined as: '$sub_GO:0006955'
FBC:DOS
Phenotype that is a defect in establishment of planar polarity (GO:0001736). 'establishment of planar polarity' is defined as: '$sub_GO:0001736'
tissue polarity defective
phenotypic_class
FBcv:0000449
fbcvsubset_mgiribbons
For apical-basal polarity phenotypes of epithelia, the appropriate term is 'cell polarity defective'.
planar polarity defective
Phenotype that is a defect in establishment of planar polarity (GO:0001736). 'establishment of planar polarity' is defined as: '$sub_GO:0001736'
GOC:dph
Phenotype that is a change in the rate of some developmental process (GO:0032502) taking place prior to mature adulthood (defined as adult stage A3), compared to wild-type. Note, developmental processes include stages in development of the whole animal (e.g.- larval development) as well as specific sub-processes, such as dorsal closure.
phenotypic_class
FBcv:0000450
fbcvsubset_mgiribbons
A more complete formalization would require a clause specifying stage. It might be possible to do this in OWL using the same system as we are using for lethal phase.
developmental rate defective
Phenotype that is a change in the rate of some developmental process (GO:0032502) taking place prior to mature adulthood (defined as adult stage A3), compared to wild-type. Note, developmental processes include stages in development of the whole animal (e.g.- larval development) as well as specific sub-processes, such as dorsal closure.
FBC:DOS
Phenotype that is a defect in wound healing (GO:0042060). 'wound healing' is defined as: '$sub_GO:0042060'
phenotypic_class
FBcv:0000451
wound healing defective
Phenotype that is a defect in wound healing (GO:0042060). 'wound healing' is defined as: '$sub_GO:0042060'
GOC:bf
PMID:15269788
Phenotype that is an abnormality in body size compared to wild-type animals raised under the same conditions as the animals exhibiting the phenotype.
phenotypic_class
FBcv:0000665
body size defective
Phenotype that is an abnormality in body size compared to wild-type animals raised under the same conditions as the animals exhibiting the phenotype.
FBC:DOS
Phenotype that is a defect in cell adhesion (GO:0007155). 'cell adhesion' is defined as: '$sub_GO:0007155'
phenotypic_class
FBcv:0000668
fbcvsubset_mgiribbons
cell adhesion defective
Phenotype that is a defect in cell adhesion (GO:0007155). 'cell adhesion' is defined as: '$sub_GO:0007155'
FBC:DOS
Phenotype that is a defect in hatching behavior (GO:0035187). 'hatching behavior' is defined as: '$sub_GO:0035187'
hatching behaviour defective
phenotypic_class
FBcv:0000669
hatching behavior defective
Phenotype that is a defect in hatching behavior (GO:0035187). 'hatching behavior' is defined as: '$sub_GO:0035187'
FBC:DOS
Phenotype that is a defect in eclosion (GO:0007562). 'eclosion' is defined as: '$sub_GO:0007562'
phenotypic_class
FBcv:0000670
fbcvsubset_mgiribbons
eclosion defective
Phenotype that is a defect in eclosion (GO:0007562). 'eclosion' is defined as: '$sub_GO:0007562'
FBC:DOS
Phenotype that is a defect in cell cycle (GO:0007049). 'cell cycle' is defined as: '$sub_GO:0007049'
phenotypic_class
FBcv:0000671
fbcvsubset_mgiribbons
cell cycle defective
Phenotype that is a defect in cell cycle (GO:0007049). 'cell cycle' is defined as: '$sub_GO:0007049'
FBC:DOS
Phenotype that is a defect in endomitotic cell cycle (GO:0007113). 'endomitotic cell cycle' is defined as: '$sub_GO:0007113'
endocycle defective
phenotypic_class
FBcv:0000672
endomitotic cell cycle defective
Phenotype that is a defect in endomitotic cell cycle (GO:0007113). 'endomitotic cell cycle' is defined as: '$sub_GO:0007113'
FBC:DOS
Phenotype that is a defect in circadian behavior (GO:0048512). 'circadian behavior' is defined as: '$sub_GO:0048512'
djs93
2009-11-30T11:06:35Z
phenotypic_class
FBcv:0000679
circadian behavior defective
Phenotype that is a defect in circadian behavior (GO:0048512). 'circadian behavior' is defined as: '$sub_GO:0048512'
FBC:DOS
Phenotype that is a defect in proboscis extension reflex (GO:0007637). 'proboscis extension reflex' is defined as: '$sub_GO:0007637'
phenotypic_class
FBcv:0000680
proboscis extension reflex defective
Phenotype that is a defect in proboscis extension reflex (GO:0007637). 'proboscis extension reflex' is defined as: '$sub_GO:0007637'
FBC:DOS
Phenotype that is a defect in sensory perception (GO:0007600). 'sensory perception' is defined as: '$sub_GO:0007600'
djs93
2010-02-23T12:28:26Z
phenotypic_class
FBcv:0000681
fbcvsubset_mgiribbons
sensory perception defective
Phenotype that is a defect in sensory perception (GO:0007600). 'sensory perception' is defined as: '$sub_GO:0007600'
FBC:DOS
Phenotype that is a defect in sensory perception of touch (GO:0050975). 'sensory perception of touch' is defined as: '$sub_GO:0050975'
phenotypic_class
touch perception defective
FBcv:0000682
touch perception defective
Phenotype that is a defect in sensory perception of touch (GO:0050975). 'sensory perception of touch' is defined as: '$sub_GO:0050975'
FBC:DOS
Phenotype that is a defect in response to temperature stimulus (GO:0009266). 'response to temperature stimulus' is defined as: '$sub_GO:0009266'
djs93
2010-02-23T12:51:02Z
phenotypic_class
FBcv:0000683
fbcvsubset_mgiribbons
temperature response defective
Phenotype that is a defect in response to temperature stimulus (GO:0009266). 'response to temperature stimulus' is defined as: '$sub_GO:0009266'
FBC:DOS
Phenotype that is a defect in response to cold (GO:0009409). 'response to cold' is defined as: '$sub_GO:0009409'
djs93
2010-02-23T02:11:27Z
phenotypic_class
FBcv:0000684
cold stress response defective
Phenotype that is a defect in response to cold (GO:0009409). 'response to cold' is defined as: '$sub_GO:0009409'
FBC:DOS
Phenotype that is a defect in axis specification (GO:0009798). 'axis specification' is defined as: '$sub_GO:0009798'
phenotypic_class
FBcv:0000686
fbcvsubset_mgiribbons
This phenotypic class does not encompass planar polarity.
axis specification defective
Phenotype that is a defect in axis specification (GO:0009798). 'axis specification' is defined as: '$sub_GO:0009798'
FBC:DOS
A phenotype that is a disruption in the wild-type pattern of segments or parasegments of the embryo or larva.
phenotypic_class
FBcv:0000698
fbcvsubset_mgiribbons
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
embryonic/larval segmentation phenotype
A phenotype that is a disruption in the wild-type pattern of segments or parasegments of the embryo or larva.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete or partial loss of alternate segments or parasegments.
phenotypic_class
FBcv:0000699
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
pair rule phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of alternate segments or parasegments.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete or partial loss of even segments.
phenotypic_class
FBcv:0000700
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
even pair-rule phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of even segments.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete or partial loss of odd segments.
phenotypic_class
FBcv:0000701
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
odd pair-rule phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of odd segments.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype in which some fraction of each segment (along the anterior-posterior axis) is deleted and replaced by a mirror image duplication of the remaining part of the segment.
phenotypic_class
FBcv:0000702
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
segment polarity phenotype
Embryonic/larval segmentation phenotype in which some fraction of each segment (along the anterior-posterior axis) is deleted and replaced by a mirror image duplication of the remaining part of the segment.
FlyBase:FBrf0035438
Embryonic/larval segmentation phenotype that is the complete loss of a contiguous stretch of 2 or more segments.
phenotypic_class
FBcv:0000703
Commonly assayed on the basis of phenotypic effects on segmentally repeated cuticular patterns.
gap phenotype
Embryonic/larval segmentation phenotype that is the complete loss of a contiguous stretch of 2 or more segments.
FlyBase:FBrf0035438
Phenotype that is a defect in sleep (GO:0030431). 'sleep' is defined as: '$sub_GO:0030431'
djs93
2010-09-20T12:06:13Z
phenotypic_class
FBcv:0000705
fbcvsubset_mgiribbons
sleep defective
Phenotype that is a defect in sleep (GO:0030431). 'sleep' is defined as: '$sub_GO:0030431'
FBC:DOS
Phenotype that is a defect in entry into diapause (GO:0055115). 'entry into diapause' is defined as: '$sub_GO:0055115'
djs93
2010-09-20T12:06:28Z
phenotypic_class
FBcv:0000706
diapause defective
Phenotype that is a defect in entry into diapause (GO:0055115). 'entry into diapause' is defined as: '$sub_GO:0055115'
FBC:DOS
Phenotype that is a defect in entry into reproductive diapause (GO:0055116). 'entry into reproductive diapause' is defined as: '$sub_GO:0055116'
djs93
2010-09-20T12:21:29Z
phenotypic_class
FBcv:0000707
reproductive diapause defective
Phenotype that is a defect in entry into reproductive diapause (GO:0055116). 'entry into reproductive diapause' is defined as: '$sub_GO:0055116'
FBC:DOS
Phenotype that is a defect in response to starvation (GO:0042594). 'response to starvation' is defined as: '$sub_GO:0042594'
phenotypic_class
FBcv:0000708
starvation stress response defective
Phenotype that is a defect in response to starvation (GO:0042594). 'response to starvation' is defined as: '$sub_GO:0042594'
FBC:DOS
Phenotype that is an increase or decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by defects in cell growth - there may be a greater or lesser number of cells in an otherwise normal volume of tissue.
phenotypic_class
FBcv:0000709
fbcvsubset_mgiribbons
cell number defective
Phenotype that is an increase or decrease in the number of cells in a whole animal or in some specific organ, tissue or clone of cells compared to wild-type. This phenotype is not necessarily accompanied by defects in cell growth - there may be a greater or lesser number of cells in an otherwise normal volume of tissue.
FBC:DOS
Phenotype that is a inability to jump. This may be due to neurological or muscular defects.
djs93
2011-03-10T04:57:06Z
phenotypic_class
FBcv:0000713
jumpless
Phenotype that is a inability to jump. This may be due to neurological or muscular defects.
FBC:DOS
Phenotype that is a defect in cell migration (GO:0016477). 'cell migration' is defined as: '$sub_GO:0016477'
phenotypic_class
FBcv:0000716
fbcvsubset_mgiribbons
cell migration defective
Phenotype that is a defect in cell migration (GO:0016477). 'cell migration' is defined as: '$sub_GO:0016477'
FBC:DOS
Phenotype that is an increase in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000717
increased cell growth
Phenotype that is an increase in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is an decrease in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
phenotypic_class
FBcv:0000718
decreased cell growth
Phenotype that is an decrease in the rate of cell growth (GO:0016049) in a whole animal or in some specific organ tissue or clone of cells compared to wild-type.
FBC:DOS
Phenotype that is a decrease in size of an initially normally sized organ or tissue due to wasting away of cells.
djs93
2011-03-10T05:59:04Z
phenotypic_class
FBcv:0000719
atrophy
Phenotype that is a decrease in size of an initially normally sized organ or tissue due to wasting away of cells.
FBC:DOS
Phenotype that is a defect or in or absence of a jump response (GO:0007630). The jump response in Drosophila is a reflex escape response that can be triggered by a number of signals including odor and light. Standard assays are commonly used to test odor and light induced jump response.
djs93
2011-03-11T08:03:28Z
phenotypic_class
FBcv:0000720
jump response defective
Phenotype that is a defect or in or absence of a jump response (GO:0007630). The jump response in Drosophila is a reflex escape response that can be triggered by a number of signals including odor and light. Standard assays are commonly used to test odor and light induced jump response.
FlyBase:FBrf0187887
FlyBase:FBrf0191819
Phenotype that is a defect in mating behavior (GO:0007617). 'mating behavior' is defined as: '$sub_GO:0007617'
phenotypic_class
FBcv:0000721
mating behavior defective
Phenotype that is a defect in mating behavior (GO:0007617). 'mating behavior' is defined as: '$sub_GO:0007617'
FBC:DOS
Phenotype that consists of abnormal growth of a tissue or organ due to increased numbers of cells, but in which the affected tissue or organ does not maintain its normal form.
phenotypic_class
FBcv:0000723
neoplasia
Phenotype that consists of abnormal growth of a tissue or organ due to increased numbers of cells, but in which the affected tissue or organ does not maintain its normal form.
FBC:DOS
Phenotype that is a reduction in size of an organ or tissue compared to wild-type due to reduced numbers of cells being produced during its development or growth.
phenotypic_class
FBcv:0000724
This term should not be used where an organ or tissue is reduced in size due to the wasting away of existing cells.
hypoplasia
Phenotype that is a reduction in size of an organ or tissue compared to wild-type due to reduced numbers of cells being produced during its development or growth.
FBC:DOS
Phenotype that is a defect in response to oxidative stress (GO:0006979). 'response to oxidative stress' is defined as: '$sub_GO:0006979'
phenotypic_class
FBcv:0000725
oxidative stress response defective
Phenotype that is a defect in response to oxidative stress (GO:0006979). 'response to oxidative stress' is defined as: '$sub_GO:0006979'
FBC:DOS
Embryonic/larval segmentation phenotype that is the complete or partial loss of terminal regions of the embryo/larva: the acron, telson and immediately adjacent segments.
djs93
2011-09-13T02:31:53Z
phenotypic_class
FBcv:0000734
terminal phenotype
Embryonic/larval segmentation phenotype that is the complete or partial loss of terminal regions of the embryo/larva: the acron, telson and immediately adjacent segments.
FBC:DOS
A phenotype in which the aging process (GO:0007568) is slower than in wild-type.
phenotypic_class
FBcv:0000791
delayed aging
A phenotype in which the aging process (GO:0007568) is slower than in wild-type.
FBC:DOC
A phenotype in which the aging process (GO:0007568) is accelerated compared to wild-type.
phenotypic_class
FBcv:0000792
premature aging
A phenotype in which the aging process (GO:0007568) is accelerated compared to wild-type.
FBC:DOC
Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: '$sub_GO:0006897'
phenotypic_class
FBcv:0001324
fbcvsubset_mgiribbons
endocytosis defective
Phenotype that is a defect in endocytosis (GO:0006897). 'endocytosis' is defined as: '$sub_GO:0006897'
FBC:DOS
phenotypic_class
FBcv:0001325
fbcvsubset_mgiribbons
exocytosis defective
A defect in or loss of some anatomical structure or biological process compared to wild-type.
phenotypic class
phenotypic_class
FBcv:0001347
do_not_annotate
The subclasses of this term classify Drosophila phenotypes into different common categories. They have been chosen by FlyBase to reflect phenotype terms most often reported by Drosophila researchers in the published literature.
phenotype
A defect in or loss of some anatomical structure or biological process compared to wild-type.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to eclosion from the pupal case (the end of the P-stage).
lethal - all die before end of pharate adult stage
phenotypic_class
As the P-Stage and the 'pharate adult stage' have the same end, there is no need for a seprate term for 'lethal - all die before end of pharate adult stage.
lethal - all die before end of P-stage
A phenotype of a population that is the death of all animals in that population at some stage or stages prior to eclosion from the pupal case (the end of the P-stage).
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the first instar larval stage.
phenotypic_class
lethal - all die before end of first instar larval stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the first instar larval stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the larval stage.
lethal - all die before end of third instar larval stage
phenotypic_class
As the larval stage and third instar larval stage have the same end, there is no need for a separate term for 'lethal - all die before end of third instar larval stage'.
lethal - all die before end of larval stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the larval stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the second instar larval stage.
phenotypic_class
lethal - all die before end of second instar larval stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the second instar larval stage.
FBC:DOS
5
5
A phenotype that is an increase in the rate of death in a population at any stage of life (during development or adulthood), over the rate seen in a wild type control population.
phenotypic_class
fbcvsubset_mgiribbons
increased mortality
A phenotype that is an increase in the rate of death in a population at any stage of life (during development or adulthood), over the rate seen in a wild type control population.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the P-stage.
phenotypic_class
lethal - all die during P-stage
A phenotype of a population that is the death of all animals in that population during the P-stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the first instar larval stage.
phenotypic_class
lethal - all die during first instar larval stage
A phenotype of a population that is the death of all animals in that population during the first instar larval stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the larval stage.
phenotypic_class
lethal - all die during larval stage
A phenotype of a population that is the death of all animals in that population during the larval stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the second instar larval stage.
phenotypic_class
lethal - all die during second instar larval stage
A phenotype of a population that is the death of all animals in that population during the second instar larval stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the third instar larval stage.
phenotypic_class
lethal - all die during third instar larval stage
A phenotype of a population that is the death of all animals in that population during the third instar larval stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the P-stage.
phenotypic_class
majority die during P-stage
A phenotype of a population that is the death of the majority of animals in that population during the P-stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the first instar larval stage.
phenotypic_class
majority die during first instar larval stage
A phenotype of a population that is the death of the majority of animals in that population during the first instar larval stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the larval stage.
phenotypic_class
majority die during larval stage
A phenotype of a population that is the death of the majority of animals in that population during the larval stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the second instar larval stage.
phenotypic_class
majority die during second instar larval stage
A phenotype of a population that is the death of the majority of animals in that population during the second instar larval stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the third instar larval stage.
phenotypic_class
majority die during third instar larval stage
A phenotype of a population that is the death of the majority of animals in that population during the third instar larval stage.
FBC:DOS
5
98
5
98
A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
partially lethal
A phenotype of a population that is the death of some significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
FBC:KM
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
phenotypic_class
increased mortality during development
A phenotype of a population that is the death of a significant proportion of animals in that population prior to becoming a mature adult, where mature is defined as after adult stage A3 (FBdv:00006012).
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the P-stage.
phenotypic_class
some die during P-stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the P-stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the first instar larval stage.
phenotypic_class
some die during first instar larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the first instar larval stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the second instar larval stage.
phenotypic_class
some die during second instar larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the second instar larval stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the larval stage.
phenotypic_class
some die during larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the larval stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the third instar larval stage.
phenotypic_class
some die during third instar larval stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the third instar larval stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the pharate adult stage.
phenotypic_class
lethal - all die during pharate adult stage
A phenotype of a population that is the death of all animals in that population during the pharate adult stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the prepupal stage.
phenotypic_class
lethal - all die before end of prepupal stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the prepupal stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the pupal stage.
phenotypic_class
lethal - all die before end of pupal stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the pupal stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the pupal stage.
phenotypic_class
lethal - all die during pupal stage
A phenotype of a population that is the death of all animals in that population during the pupal stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the prepupal stage.
phenotypic_class
lethal - all die during prepupal stage
A phenotype of a population that is the death of all animals in that population during the prepupal stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the embryonic stage.
phenotypic_class
lethal - all die before end of embryonic stage
A phenotype of a population that is the death of all animals in that population at some stage or stages before the end of the embryonic stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population during the embryonic stage.
phenotypic_class
lethal - all die during embryonic stage
98
Need to add local reflexivity to part_of for this to work. And really need to be using continuant part of.
A phenotype of a population that is the death of all animals in that population during the embryonic stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the pupal stage.
phenotypic_class
majority die during pupal stage
A phenotype of a population that is the death of the majority of animals in that population during the pupal stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the prepupal stage.
phenotypic_class
majority die during prepupal stage
A phenotype of a population that is the death of the majority of animals in that population during the prepupal stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the pharate adult stage.
phenotypic_class
majority die during pharate adult stage
A phenotype of a population that is the death of the majority of animals in that population during the pharate adult stage.
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population during the embryonic stage.
phenotypic_class
This term is agnostic about whether any survive to adulthood.
majority die during embryonic stage
A phenotype of a population that is the death of the majority of animals in that population during the embryonic stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the pharate adult stage.
phenotypic_class
some die during pharate adult stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the pharate adult stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the pupal stage.
phenotypic_class
some die during pupal stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the pupal stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the prepupal stage.
phenotypic_class
some die during prepupal stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the prepupal stage.
FBC:DOS
5
5
A phenotype of a population that is the death of a significant proportion of animals in that population during the embryonic stage.
phenotypic_class
some die during embryonic stage
A phenotype of a population that is the death of a significant proportion of animals in that population during the embryonic stage.
FBC:DOS
98
98
A phenotype of a population that is the death of all animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
lethal - all die during immature adult stage
A phenotype of a population that is the death of all animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
50
50
A phenotype of a population that is the death of the majority of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
majority die during immature adult stage
A phenotype of a population that is the death of the majority of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
5
5
A phenotype of a population that is the death of some significant number of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
phenotypic_class
some die during immature adult stage
A phenotype of a population that is the death of some significant number of animals in that population as immature adults (after eclosion but before the end of adult stage A3 (FBdv:00006012)).
FBC:DOS
Phenotype that is a defect in sensory perception of light stimulus (GO:0050953). 'sensory perception of light stimulus' is defined as: '$sub_GO:0050953'
phenotypic_class
FBcv:0004000
visual perception defective
Phenotype that is a defect in sensory perception of light stimulus (GO:0050953). 'sensory perception of light stimulus' is defined as: '$sub_GO:0050953'
FBC:MMC
Phenotype that is a defect in copulation (GO:0007620). 'copulation' is defined as: '$sub_GO:0007620'
phenotypic_class
FBcv:0006000
copulation defective
Phenotype that is a defect in copulation (GO:0007620). 'copulation' is defined as: '$sub_GO:0007620'
FBC:TEMJ
Phenotype that is an increase in the number of gametes produced.
phenotypic_class
FBcv:0006001
increased fecundity
Phenotype that is an increase in the number of gametes produced.
FBC:TEMJ
Phenotype that is a decrease in the number of gametes produced.
phenotypic_class
FBcv:0006002
decreased fecundity
Phenotype that is a decrease in the number of gametes produced.
FBC:TEMJ
Phenotype that is a defect in oviposition (GO:0007620). 'oviposition' is defined as: '$sub_GO:0018991'.
phenotypic_class
FBcv:0006004
This term should only be used to report defects specifically in oviposition, as opposed to an overall loss of fertility. If a difference in "oviposition rate" is measured by authors as a proxy for sterility/fertility, it would be better to use the terms "sterile", "semi-sterile", or "semi-fertile", as appropriate.
oviposition defective
Phenotype that is a defect in oviposition (GO:0007620). 'oviposition' is defined as: '$sub_GO:0018991'.
FBC:TEMJ
A phenotype that is an increased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
phenotypic_class
FBcv:0006005
fbcvsubset_mgiribbons
increased occurrence of cell division
A phenotype that is an increased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
FBC:TEMJ
A phenotype that is a decreased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
phenotypic_class
FBcv:0006006
fbcvsubset_mgiribbons
decreased occurrence of cell division
A phenotype that is a decreased occurrence of cell division (GO:0051301). 'cell division' is defined as '$sub_GO:0051301'.
FBC:TEMJ
A temporal subdivision of a developmental process.
djs93
2009-10-01T05:56:56Z
FBdv:00007010
FlyBase_development_CV
FBdv:00005259
developmental stage
A temporal subdivision of a developmental process.
FBC:DOS
The stage of the Drosophila life-cycle from fertilisation to hatching.
FlyBase_development_CV
FBdv:00005289
Temporal ordering number - 20.
embryonic stage
The stage of the Drosophila life-cycle from fertilisation to hatching.
FBC:DOS
The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
FlyBase_development_CV
FBdv:00005336
Temporal ordering number - 400.
larval stage
The stage of the Drosophila life-cycle from hatching to the beginning of puparium formation.
FBC:DOS
The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
L1
first instar larva
FlyBase_development_CV
FBdv:00005337
Temporal ordering number - 410.
first instar larval stage
The first larval instar begins at hatching and ends at the first larval molt. Anterior spiracles are not yet present; posterior spiracles have two openings each. Salivary glands are very small and all cells are uniform in size. Mouth hooks typically have one tooth. Duration at 25 degrees C: approximately 25 hours (24-49 hours after egg laying; 0-25 hours after hatching).
FlyBase:FBrf0007733
The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
L2
second instar larva
FlyBase_development_CV
FBdv:00005338
Temporal ordering number - 420.
second instar larval stage
The second larval instar begins at the first larval molt and ends at the second larval molt. Larvae are actively feeding and crawling in the food. Distinct anterior spiracles are present as enlargements at the end of the tracheal trunk, but not open to the outside; posterior spiracles have three openings each, and four groups of small unbranched hairs. The salivary glands extend to the first abdominal segment, and have cells that are uniform in size. Mouth hooks typically have two or three teeth. Duration at 25 degrees C: approximately 23 hours (49-72 hours after egg laying; 25-48 hours after hatching).
FlyBase:FBrf0007733
The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
L3
FlyBase_development_CV
third instar larva
FBdv:00005339
Temporal ordering number - 430.
third instar larval stage
The third larval instar begins at the second larval molt and ends at puparium formation. Anterior spiracles are open to the outside; posterior spiracles have three openings each, and four groups of large branched hairs. The salivary glands extend to the second abdominal segment, with cells larger in the posterior than in the anterior of the gland. Mouth hooks typically have 9-12 teeth. About 24 hours before pupariation (at 25 degree C), larvae stop feeding and climb away from their food. Duration at 25 degrees C: approximately 48 hours (72-120 hours after egg laying; 48-96 hours after hatching).
FlyBase:FBrf0007733
The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
FlyBase_development_CV
FBdv:00005342
Temporal ordering number - 500.
prepupal stage
The prepupal stage begins at puparium formation and ends when larval/pupal apolysis is complete, as indicated by the completion of imaginal head sac eversion and the expulsion of the oral armature of the larva. Duration at 25 degrees C: approximately 12 hours. (120-132.2 hours after egg laying; 0-12.2 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
phanerocephalic pupa
FlyBase_development_CV
FBdv:00005349
Temporal ordering number - 570. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head and expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.
pupal stage
The pupal stage starts once larval/pupal apolysis is complete as indicated by the expulsion of the larval armature. Early in this stage, the legs and wings reach full extension along the abdomen. The stage ends when the pupal cuticle separates from the underlying epidermis (pupal/adult apolysis), and the eye cup becomes yellow at its periphery. Duration at 25 degrees C: approximately 32 hours. (132.2-164.3 hours after egg laying; 12.2-44.3 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
phanerocephalic pupa
FlyBase:FBrf0036849
The stage of the Drosophila life-cycle from eclosion to death.
FlyBase_development_CV
FBdv:00005369
Temporal ordering number - 770.
adult stage
The stage of the Drosophila life-cycle from eclosion to death.
FBC:DOS
Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
FBdv:00005373
FlyBase_development_CV
adult stage I
FBdv:00005370
Temporal ordering number - 785. The time at which eclosed flies settle down for wing expansion can vary greatly. If they fail to find a suitable site then expansion can be delayed by several hours.
adult stage A1
Newly eclosed adult stage. Animal free of pupal case. Runs rapidly to find site for wing expansion. Wings are folded back and black against a very pale abdomen.
FlyBase:FBrf0049147
Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
FBdv:00005374
FlyBase_development_CV
adult stage II
FBdv:00005371
Temporal ordering number - 790.
adult stage A2
Stage, shortly after eclosion, during which the wings expand. During wing expansion, the abdomen pulsates and the hind legs stroke the wings vigorously for several minutes at a time. The stage ends when the wings are folded down over the abdomen, which has become broader and shorter, and the wing cuticle has lost its folds. The stage lasts around 15 minutes at 25'C.
FlyBase:FBrf0049147
The developing adult after pupal-adult apolysis , i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
FlyBase_development_CV
FBdv:00006011
Temporal ordering number - 625.
pharate adult stage
The developing adult after pupal-adult apolysis , i.e.- from stage P8 (when yellow eye color first becomes visible through the pupal case), to eclosion. Duration at 25 degrees C: approximately 55.7 hours (164.3-220 hours after egg laying; 44.3-100 hours after puparium formation).
FlyBase:FBrf0036849
FlyBase:FBrf0048355
FlyBase:FBrf0049147
Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
FBdv:00005375
FlyBase_development_CV
adult stage III
FBdv:00006012
Temporal ordering number - 800.
adult stage A3
Adult stage immediately after wing expansion, during which tanning of the cuticle is completed. This stage lasts approximately 45 minutes at 25'C.
FlyBase:FBrf0049147
The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
david
2008-06-05T04:51:40Z
metamorphosis
FlyBase_development_CV
pupal stage
FBdv:00007001
Temporal ordering number - 490. DISAMBIGUATION: In Drosophila lab vernacular, the term 'pupal stage' is often used to refer to the entire period from formation of the puparium to eclosion. However, this does not correspond to the standard usage of 'pupal stage' for Cyclorrhaphous flies (for discussion see: FBrf0087128). Briefly: formation of the puparium (hardening of the larval cuticle) marks the beginning of the pre-pupal stage. The pupal stage begins following pupal/larval apolysis - detachment of the larval epidermis from the puparium. In Drosophila, the outward sign of the completion of apolysis is the eversion of the head an expulsion of the larval mouthparts (FBrf0036849). We use P-stage to refer to the stage from pupariation to eclosion, and restrict pupal stage to its standard usage.
P-stage
The stage of the Drosophila life-cycle from the formation of the puparium (beginning of the prepupal stage) to eclosion.
FBC:DOS
A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilisation; hatching; pupal ecdysis; eclosion.
djs93
2009-10-01T05:59:22Z
FlyBase_development_CV
life cycle stage
FBdv:00007012
life stage
A temporal subdivision of a Drosophila life, delimited by major transitions in the circumstances of the organism, such as: fertilisation; hatching; pupal ecdysis; eclosion.
FBC:DOS
The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
djs93
2013-01-08T20:06:59Z
FlyBase_development_CV
FBdv:00007025
Temporal ordering number - 782.
immature adult stage
The developmental stage that lasts from eclosion of the adult from the pupal case until tanning is complete (the end of adult stage A3).
FBC:DOS
Life stage from the end of adult stage A3, when tanning is complete, to death.
djs93
2013-01-10T13:03:54Z
FlyBase_development_CV
FBdv:00007026
mature adult stage
Life stage from the end of adult stage A3, when tanning is complete, to death.
FBC:DOS
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
GO:0019952
GO:0050876
Wikipedia:Reproduction
reproductive physiological process
biological_process
GO:0000003
reproduction
The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms.
GOC:go_curators
GOC:isa_complete
GOC:jl
ISBN:0198506732
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
GO:0007067
Reactome:REACT_100451
Reactome:REACT_104035
Reactome:REACT_104195
Reactome:REACT_105856
Reactome:REACT_108233
Reactome:REACT_152
Reactome:REACT_28464
Reactome:REACT_28953
Reactome:REACT_33388
Reactome:REACT_53493
Reactome:REACT_79085
Reactome:REACT_84794
Reactome:REACT_85137
Reactome:REACT_85950
Reactome:REACT_90332
Reactome:REACT_90846
Reactome:REACT_96281
Reactome:REACT_97744
Reactome:REACT_98208
Wikipedia:Mitosis
biological_process
mitosis
GO:0000278
mitotic cell cycle
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
GOC:mah
ISBN:0815316194
Reactome:69278
Reactome:REACT_100451
Cell Cycle, Mitotic, Taeniopygia guttata
Reactome:REACT_104035
Cell Cycle, Mitotic, Sus scrofa
Reactome:REACT_104195
Cell Cycle, Mitotic, Canis familiaris
Reactome:REACT_105856
Cell Cycle, Mitotic, Danio rerio
Reactome:REACT_108233
Cell Cycle, Mitotic, Saccharomyces cerevisiae
Reactome:REACT_152
Cell Cycle, Mitotic, Homo sapiens
Reactome:REACT_28464
Cell Cycle, Mitotic, Xenopus tropicalis
Reactome:REACT_28953
Cell Cycle, Mitotic, Bos taurus
Reactome:REACT_33388
Cell Cycle, Mitotic, Rattus norvegicus
Reactome:REACT_53493
Cell Cycle, Mitotic, Plasmodium falciparum
Reactome:REACT_79085
Cell Cycle, Mitotic, Schizosaccharomyces pombe
Reactome:REACT_84794
Cell Cycle, Mitotic, Caenorhabditis elegans
Reactome:REACT_85137
Cell Cycle, Mitotic, Gallus gallus
Reactome:REACT_85950
Cell Cycle, Mitotic, Arabidopsis thaliana
Reactome:REACT_90332
Cell Cycle, Mitotic, Mus musculus
Reactome:REACT_90846
Cell Cycle, Mitotic, Oryza sativa
Reactome:REACT_96281
Cell Cycle, Mitotic, Drosophila melanogaster
Reactome:REACT_97744
Cell Cycle, Mitotic, Dictyostelium discoideum
Reactome:REACT_98208
Cell Cycle, Mitotic, Mycobacterium tuberculosis
The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.
GO:0007104
GO:0016288
GO:0033205
Reactome:REACT_101918
Reactome:REACT_108805
Reactome:REACT_1932
Reactome:REACT_30667
Reactome:REACT_32636
Reactome:REACT_78494
Reactome:REACT_84722
Reactome:REACT_87726
Reactome:REACT_92849
Reactome:REACT_93374
Reactome:REACT_94382
Reactome:REACT_98952
Reactome:REACT_99118
Wikipedia:Cytokinesis
cell cycle cytokinesis
cytokinesis involved in cell cycle
biological_process
GO:0000910
Note that when annotating eukaryotic species, mitotic or meiotic cytokinesis should always be specified for manual annotation and for prokaryotic species use 'FtsZ-dependent cytokinesis ; GO:0043093' or Cdv-dependent cytokinesis ; GO:0061639. Also, note that cytokinesis does not necessarily result in physical separation and detachment of the two daughter cells from each other.
cytokinesis
The division of the cytoplasm and the plasma membrane of a cell and its partitioning into two daughter cells.
GOC:mtg_cell_cycle
Reactome:REACT_101918
Mitotic Telophase /Cytokinesis, Mus musculus
Reactome:REACT_108805
Mitotic Telophase /Cytokinesis, Dictyostelium discoideum
Reactome:REACT_1932
Mitotic Telophase /Cytokinesis, Homo sapiens
Reactome:REACT_30667
Mitotic Telophase /Cytokinesis, Schizosaccharomyces pombe
Reactome:REACT_32636
Mitotic Telophase /Cytokinesis, Bos taurus
Reactome:REACT_78494
Mitotic Telophase /Cytokinesis, Danio rerio
Reactome:REACT_84722
Mitotic Telophase /Cytokinesis, Gallus gallus
Reactome:REACT_87726
Mitotic Telophase /Cytokinesis, Xenopus tropicalis
Reactome:REACT_92849
Mitotic Telophase /Cytokinesis, Taeniopygia guttata
Reactome:REACT_93374
Mitotic Telophase /Cytokinesis, Canis familiaris
Reactome:REACT_94382
Mitotic Telophase /Cytokinesis, Drosophila melanogaster
Reactome:REACT_98952
Mitotic Telophase /Cytokinesis, Rattus norvegicus
Reactome:REACT_99118
Mitotic Telophase /Cytokinesis, Caenorhabditis elegans
cytokinesis involved in cell cycle
GOC:dph
GOC:tb
Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates.
establishment of planar cell polarity
biological_process
GO:0001736
establishment of planar polarity
Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates.
GOC:dph
The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis.
epithelial polarization
biological_process
GO:0001738
morphogenesis of a polarized epithelium
The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis.
GOC:dph
epithelial polarization
GOC:dph
The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
epithelium morphogenesis
biological_process
GO:0002009
morphogenesis of an epithelium
The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
GOC:dph
GOC:jl
GOC:tb
ISBN:0198506732
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
Wikipedia:Immune_system
biological_process
GO:0002376
Note that this term is a direct child of 'biological_process ; GO:0008150' because some immune system processes are types of cellular process (GO:0009987), whereas others are types of multicellular organism process (GO:0032501). This term was added by GO_REF:0000022.
immune system process
Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
GOC:add
GOC:mtg_15nov05
GO_REF:0000022
The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
biological_process
pattern formation
GO:0003002
regionalization
The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment.
GOC:dph
GOC:isa_complete
pattern formation
GOC:dph
A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring.
puberty
biological_process
reproductive developmental process
GO:0003006
developmental process involved in reproduction
A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring.
GOC:dph
GOC:isa_complete
puberty
GOC:dph
reproductive developmental process
GOC:dph
GOC:tb
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
organ system process
biological_process
GO:0003008
system process
A multicellular organismal process carried out by any of the organs or tissues in an organ system. An organ system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a biological objective.
GOC:mtg_cardio
The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
GO:0008372
NIF_Subcellular:sao-1337158144
NIF_Subcellular:sao1337158144
cell or subcellular entity
cellular component
cellular_component
subcellular entity
GO:0005575
Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
cellular_component
The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
GOC:go_curators
NIF_Subcellular:sao-1337158144
subcellular entity
NIF_Subcellular:nlx_subcell_100315
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
NIF_Subcellular:sao1813327414
Wikipedia:Cell_(biology)
cellular_component
GO:0005623
cell
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
GOC:go_curators
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0055134
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism
nucleobase, nucleoside, nucleotide and nucleic acid metabolism
biological_process
nucleobase, nucleoside and nucleotide metabolic process
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GO:0006139
nucleobase-containing compound metabolic process
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GOC:ai
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
GOC:dph
GOC:tb
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
GO:0055132
DNA metabolism
cellular DNA metabolism
biological_process
GO:0006259
DNA metabolic process
Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
ISBN:0198506732
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Reactome:REACT_102034
Reactome:REACT_106650
Reactome:REACT_107446
Reactome:REACT_107692
Reactome:REACT_107752
Reactome:REACT_108864
Reactome:REACT_108881
Reactome:REACT_108903
Reactome:REACT_109956
Reactome:REACT_115642
Reactome:REACT_115836
Reactome:REACT_127
Reactome:REACT_216
Reactome:REACT_29531
Reactome:REACT_29636
Reactome:REACT_78051
Reactome:REACT_82907
Reactome:REACT_83608
Reactome:REACT_83660
Reactome:REACT_84835
Reactome:REACT_85522
Reactome:REACT_86513
Reactome:REACT_86902
Reactome:REACT_88201
Reactome:REACT_88946
Reactome:REACT_89524
Reactome:REACT_90385
Reactome:REACT_90952
Reactome:REACT_91094
Reactome:REACT_91330
Reactome:REACT_91442
Reactome:REACT_91576
Reactome:REACT_92707
Reactome:REACT_93704
Reactome:REACT_94204
Reactome:REACT_94769
Reactome:REACT_95050
Reactome:REACT_95158
Reactome:REACT_96052
Reactome:REACT_96452
Reactome:REACT_99277
Wikipedia:DNA_repair
biological_process
GO:0006281
DNA repair
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
PMID:11563486
Reactome:REACT_102034
DNA Repair, Staphylococcus aureus N315
Reactome:REACT_106650
DNA Damage Reversal, Taeniopygia guttata
Reactome:REACT_107446
DNA Repair, Arabidopsis thaliana
Reactome:REACT_107692
DNA Damage Reversal, Gallus gallus
Reactome:REACT_107752
DNA Repair, Plasmodium falciparum
Reactome:REACT_108864
DNA Damage Reversal, Rattus norvegicus
Reactome:REACT_108881
DNA Damage Reversal, Bos taurus
Reactome:REACT_108903
DNA Repair, Xenopus tropicalis
Reactome:REACT_109956
DNA Repair, Gallus gallus
Reactome:REACT_115642
DNA repair, Gallus gallus
Reactome:REACT_115836
Fanconi Anemia Pathway in DNA repair, Gallus gallus
Reactome:REACT_127
DNA Damage Reversal, Homo sapiens
Reactome:REACT_216
DNA Repair, Homo sapiens
Reactome:REACT_29531
DNA Damage Reversal, Saccharomyces cerevisiae
Reactome:REACT_29636
DNA Damage Reversal, Staphylococcus aureus N315
Reactome:REACT_78051
DNA Damage Reversal, Canis familiaris
Reactome:REACT_82907
DNA Repair, Oryza sativa
Reactome:REACT_83608
DNA Damage Reversal, Caenorhabditis elegans
Reactome:REACT_83660
DNA Repair, Escherichia coli
Reactome:REACT_84835
DNA Damage Reversal, Dictyostelium discoideum
Reactome:REACT_85522
DNA Repair, Mus musculus
Reactome:REACT_86513
DNA Repair, Mycobacterium tuberculosis
Reactome:REACT_86902
DNA Repair, Danio rerio
Reactome:REACT_88201
DNA Repair, Drosophila melanogaster
Reactome:REACT_88946
DNA Damage Reversal, Mycobacterium tuberculosis
Reactome:REACT_89524
DNA Damage Reversal, Drosophila melanogaster
Reactome:REACT_90385
DNA Repair, Canis familiaris
Reactome:REACT_90952
DNA Damage Reversal, Arabidopsis thaliana
Reactome:REACT_91094
DNA Repair, Rattus norvegicus
Reactome:REACT_91330
DNA Repair, Bos taurus
Reactome:REACT_91442
DNA Repair, Caenorhabditis elegans
Reactome:REACT_91576
DNA Damage Reversal, Oryza sativa
Reactome:REACT_92707
DNA Repair, Taeniopygia guttata
Reactome:REACT_93704
DNA Repair, Saccharomyces cerevisiae
Reactome:REACT_94204
DNA Repair, Sus scrofa
Reactome:REACT_94769
DNA Repair, Schizosaccharomyces pombe
Reactome:REACT_95050
DNA Damage Reversal, Sus scrofa
Reactome:REACT_95158
DNA Damage Reversal, Xenopus tropicalis
Reactome:REACT_96052
DNA Repair, Dictyostelium discoideum
Reactome:REACT_96452
DNA Damage Reversal, Danio rerio
Reactome:REACT_99277
DNA Damage Reversal, Mus musculus
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
aromatic compound metabolism
aromatic hydrocarbon metabolic process
aromatic hydrocarbon metabolism
biological_process
GO:0006725
cellular aromatic compound metabolic process
The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells.
GOC:ai
ISBN:0198506732
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
nitrogen compound metabolism
biological_process
GO:0006807
nitrogen compound metabolic process
The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
CHEBI:51143
GOC:go_curators
GOC:jl
ISBN:0198506732
The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
GO:0015457
GO:0015460
small molecule transport
solute:solute exchange
biological_process
auxiliary transport protein activity
transport accessory protein activity
GO:0006810
transport
The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
GOC:dos
GOC:dph
GOC:jl
GOC:mah
auxiliary transport protein activity
GOC:mah
transport accessory protein activity
GOC:mah
A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell.
GO:0016194
GO:0016195
Wikipedia:Exocytosis
vesicle exocytosis
biological_process
nonselective vesicle exocytosis
GO:0006887
exocytosis
A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle. Exocytosis can occur either by full fusion, when the vesicle collapses into the plasma membrane, or by a kiss-and-run mechanism that involves the formation of a transient contact, a pore, between a granule (for exemple of chromaffin cells) and the plasma membrane. The latter process most of the time leads to only partial secretion of the granule content. Exocytosis begins with steps that prepare vesicles for fusion with the membrane (tethering and docking) and ends when molecules are secreted from the cell.
GOC:mah
ISBN:0716731363
PMID:22323285
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
GO:0016193
GO:0016196
Wikipedia:Endocytosis
plasma membrane invagination
vesicle endocytosis
biological_process
nonselective vesicle endocytosis
GO:0006897
endocytosis
A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
GOC:mah
ISBN:0198506732
ISBN:0716731363
The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
cellular component motion
cellular component movement
biological_process
cell movement
GO:0006928
Note that in GO cellular components include whole cells (cell is_a cellular component).
movement of cell or subcellular component
The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
GOC:dgh
GOC:dph
GOC:jl
GOC:mlg
cellular component motion
GOC:dph
GOC:jl
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
biological_process
response to abiotic stress
response to biotic stress
GO:0006950
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
biological_process
GO:0006955
This term was improved by GO_REF:0000022. It was redefined and moved.
immune response
Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
GOC:add
GOC:mtg_15nov05
GO_REF:0000022
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
osmotic response
osmotic stress response
biological_process
GO:0006970
response to osmotic stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
GOC:jl
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GO:0034984
response to DNA damage stimulus
DNA damage response
cellular DNA damage response
response to genotoxic stress
biological_process
GO:0006974
cellular response to DNA damage stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
GOC:go_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
biological_process
GO:0006979
response to oxidative stress
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
GOC:jl
PMID:12115731
The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
Wikipedia:Cell_cycle
cell-division cycle
biological_process
GO:0007049
cell cycle
The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
GOC:go_curators
GOC:mtg_cell_cycle
A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
Wikipedia:Mitosis#Endomitosis
biological_process
endomitosis
GO:0007113
Note that this term should not be confused with 'abortive mitotic cell cycle ; GO:0033277'. Although abortive mitosis is sometimes called endomitosis, GO:0033277 refers to a process in which a mitotic spindle forms and chromosome separation begins.
endomitotic cell cycle
A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell.
GOC:curators
GOC:dos
GOC:expert_vm
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
Wikipedia:Cell_adhesion
biological_process
cell adhesion molecule activity
GO:0007155
cell adhesion
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GOC:hb
GOC:pf
Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
biological_process
GO:0007164
establishment of tissue polarity
Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.
GOC:jid
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
biological_process
GO:0007275
Note that this term was 'developmental process'.
multicellular organism development
The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
GOC:dph
GOC:ems
GOC:isa_complete
GOC:tb
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
biological_process
pattern biosynthesis
pattern formation
GO:0007389
pattern specification process
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate.
GOC:go_curators
GOC:isa_complete
ISBN:0521436125
Any process that establishes and transmits the specification of sexual status of an individual organism.
Wikipedia:Sex-determination_system
biological_process
GO:0007530
sex determination
Any process that establishes and transmits the specification of sexual status of an individual organism.
ISBN:0198506732
Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
Wikipedia:Dosage_compensation
biological_process
GO:0007549
dosage compensation
Compensating for the variation in the unpaired sex chromosome:autosome chromosome ratios between sexes by activation or inactivation of genes on one or both of the sex chromosomes.
GOC:ems
ISBN:0140512888
PMID:11498577
The emergence of an adult insect from a pupa case.
Wikipedia:Pupa#Emergence
biological_process
GO:0007562
eclosion
The emergence of an adult insect from a pupa case.
GOC:dgh
GOC:dos
GOC:mah
ISBN:0198600461
A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
GO:0016280
Wikipedia:Aging
ageing
biological_process
GO:0007568
aging
A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
GOC:PO_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
response to nutrients
nutritional response pathway
biological_process
GO:0007584
response to nutrient
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
GOC:go_curators
The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
Wikipedia:Perception
biological_process
GO:0007600
sensory perception
The series of events required for an organism to receive a sensory stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
GOC:dph
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
Wikipedia:Hearing_(sense)
hearing
perception of sound
biological_process
GO:0007605
sensory perception of sound
The series of events required for an organism to receive an auditory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Sonic stimuli are detected in the form of vibrations and are processed to form a sound.
GOC:ai
The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
chemosensory perception
biological_process
GO:0007606
sensory perception of chemical stimulus
The series of events required for an organism to receive a sensory chemical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
Wikipedia:Olfaction
olfaction
scent perception
sense of smell
smell perception
biological_process
GO:0007608
sensory perception of smell
The series of events required for an organism to receive an olfactory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Olfaction involves the detection of chemical composition of an organism's ambient medium by chemoreceptors. This is a neurological process.
GOC:ai
http://www.onelook.com/
The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
Wikipedia:Behavior
behavioral response to stimulus
behaviour
behavioural response to stimulus
biological_process
GO:0007610
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
behavior
The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.
GOC:ems
GOC:jl
ISBN:0395448956
PMID:20160973
The acquisition and processing of information and/or the storage and retrieval of this information over time.
biological_process
GO:0007611
learning or memory
The acquisition and processing of information and/or the storage and retrieval of this information over time.
GOC:jid
PMID:8938125
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
Wikipedia:Learning
biological_process
GO:0007612
learning
Any process in an organism in which a relatively long-lasting adaptive behavioral change occurs as the result of experience.
ISBN:0582227089
ISBN:0721662544
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
Wikipedia:Memory
biological_process
GO:0007613
memory
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
GOC:curators
ISBN:0582227089
http://www.onelook.com/
The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
Wikipedia:Mating_behaviour
mating behaviour
biological_process
GO:0007617
mating behavior
The behavioral interactions between organisms for the purpose of mating, or sexual reproduction resulting in the formation of zygotes.
GOC:ai
GOC:dph
The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
biological_process
GO:0007618
mating
The pairwise union of individuals for the purpose of sexual reproduction, ultimately resulting in the formation of zygotes.
GOC:jl
ISBN:0387520546
The behavioral interactions between organisms for the purpose of attracting sexual partners.
courtship behaviour
biological_process
GO:0007619
courtship behavior
The behavioral interactions between organisms for the purpose of attracting sexual partners.
GOC:ai
GOC:dph
The act of sexual union between male and female, involving the transfer of sperm.
biological_process
GO:0007620
copulation
The act of sexual union between male and female, involving the transfer of sperm.
ISBN:0721662544
The specific behavior of an organism that recur with measured regularity.
rhythmic behavioral response to stimulus
rhythmic behaviour
rhythmic behavioural response to stimulus
biological_process
GO:0007622
rhythmic behavior
The specific behavior of an organism that recur with measured regularity.
GOC:jl
GOC:pr
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GO:0050895
Wikipedia:Circadian_rhythm
circadian process
biological_process
circadian response
response to circadian rhythm
GO:0007623
circadian rhythm
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
GOC:bf
GOC:go_curators
The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
grooming behaviour
biological_process
GO:0007625
grooming behavior
The specific behavior of an organism relating to grooming, cleaning and brushing to remove dirt and parasites.
GOC:jl
GOC:pr
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
behavior via locomotion
locomotion in response to stimulus
locomotory behavioral response to stimulus
locomotory behaviour
locomotory behavioural response to stimulus
biological_process
GO:0007626
locomotory behavior
The specific movement from place to place of an organism in response to external or internal stimuli. Locomotion of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions.
GOC:dph
The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus.
biological_process
GO:0007630
jump response
The sudden, usually upward, movement off the ground or other surface through sudden muscular effort in the legs, following exposure to an external stimulus.
GOC:jid
ISBN:0198606907
Behavior associated with the intake of food.
Wikipedia:List_of_feeding_behaviours
behavioral response to food
behavioural response to food
feeding behaviour
drinking
eating
biological_process
GO:0007631
See also the biological process term 'behavior ; GO:0007610'.
feeding behavior
Behavior associated with the intake of food.
GOC:mah
The behavior of an organism in response to a visual stimulus.
behavioral response to visual stimulus
behavioural response to visual stimulus
visual behaviour
biological_process
GO:0007632
visual behavior
The behavior of an organism in response to a visual stimulus.
GOC:jid
GOC:pr
The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
optokinetic behaviour
biological_process
GO:0007634
optokinetic behavior
The behavior of an organism pertaining to movement of the eyes and of objects in the visual field, as in nystagmus.
GOC:jid
GOC:pr
http://www.mercksource.com
Behavior that is dependent upon the sensation of chemicals.
behavioral response to chemical stimulus
behavioural response to chemical stimulus
chemosensory behaviour
biological_process
GO:0007635
chemosensory behavior
Behavior that is dependent upon the sensation of chemicals.
GOC:go_curators
The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a sugar stimulus.
behavioral response to sugar stimulus, proboscis extension
proboscis extension in response to sugar stimulus
biological_process
GO:0007637
proboscis extension reflex
The extension, through direct muscle actions, of the proboscis (the trunk-like extension of the mouthparts on the adult external head) in response to a sugar stimulus.
FB:FBrf0044924
GOC:jid
The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
GO:0016542
male courtship behaviour
biological_process
GO:0008049
male courtship behavior
The behavior of a male, for the purpose of attracting a sexual partner. An example of this process is found in Drosophila melanogaster.
GOC:mtg_sensu
GOC:pr
The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
biological_process
GO:0008062
eclosion rhythm
The timing of the emergence of the adult fly from its pupal case, which usually occurs at dawn.
PMID:11715043
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GO:0000004
GO:0007582
Wikipedia:Biological_process
biological process
physiological process
biological_process
GO:0008150
Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
biological_process
Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
GOC:go_curators
GOC:isa_complete
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Wikipedia:Metabolism
metabolism
metabolic process resulting in cell growth
metabolism resulting in cell growth
biological_process
GO:0008152
Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions.
metabolic process
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GOC:go_curators
ISBN:0198547684
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).
biological_process
accidental cell death
necrosis
GO:0008219
This term should not be used for direct annotation. The only exception should be when experimental data (e.g., staining with trypan blue or propidium iodide) show that cell death has occurred, but fail to provide details on death modality (accidental versus programmed). When information is provided on the cell death mechanism, annotations should be made to the appropriate descendant of 'cell death' (such as, but not limited to, GO:0097300 'programmed necrotic cell death' or GO:0006915 'apoptotic process'). Also, if experimental data suggest that a gene product influences cell death indirectly, rather than being involved in the death process directly, consider annotating to a 'regulation' term.
cell death
Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).
GOC:mah
GOC:mtg_apoptosis
PMID:25236395
Locomotory behavior in a fully developed and mature organism.
adult locomotory behaviour
biological_process
GO:0008344
See also the biological process term 'locomotory behavior ; GO:0007626'.
adult locomotory behavior
Locomotory behavior in a fully developed and mature organism.
GOC:ai
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
response to thermal stimulus
biological_process
GO:0009266
response to temperature stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
GOC:hb
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
response to electromagnetic radiation stimulus
response to radiation stimulus
biological_process
GO:0009314
Note that 'radiation' refers to electromagnetic radiation of any wavelength.
response to radiation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
GOC:jl
Wikipedia:Electromagnetic_radiation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GO:0006951
response to heat shock
biological_process
GO:0009408
response to heat
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
GOC:lr
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
biological_process
freezing tolerance
GO:0009409
response to cold
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
GOC:lr
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
biological_process
GO:0009416
response to light stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
GOC:go_curators
ISBN:0582227089
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
energytaxis
taxis in response to energy source
biological_process
GO:0009453
energy taxis
The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates.
GOC:jl
PMID:11029423
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
response to environmental stimulus
biological_process
GO:0009605
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to external stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus.
GOC:hb
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GO:0002245
physiological response to wounding
biological_process
GO:0009611
response to wounding
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
GOC:go_curators
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
response to abiotic stress
biological_process
GO:0009628
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to abiotic stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus.
GOC:hb
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
response to gravitational stimulus
biological_process
GO:0009629
response to gravity
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus.
GOC:hb
Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
Wikipedia:Photoperiodism
response to day length
response to night length
response to photoperiod
biological_process
GO:0009648
photoperiodism
Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
GOC:jid
GOC:pj
ISBN:0582015952
ISBN:0697037754
ISBN:0709408862
The synchronization of a circadian rhythm to environmental time cues such as light.
biological_process
regulation of circadian rhythm phase
GO:0009649
entrainment of circadian clock
The synchronization of a circadian rhythm to environmental time cues such as light.
GOC:jid
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
embryogenesis and morphogenesis
Wikipedia:Morphogenesis
anatomical structure organization
morphogenesis
biological_process
GO:0009653
anatomical structure morphogenesis
The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form.
GOC:go_curators
ISBN:0521436125
The establishment, maintenance and elaboration of a pattern along a line or around a point.
biological_process
axis determination
GO:0009798
axis specification
The establishment, maintenance and elaboration of a pattern along a line or around a point.
GOC:dph
GOC:go_curators
GOC:isa_complete
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
histogenesis and organogenesis
Wikipedia:Histogenesis
histogenesis
biological_process
GO:0009888
tissue development
The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure.
ISBN:0471245208
The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
dorsal-ventral axis specification
dorsoventral axis specification
biological_process
dorsal/ventral axis determination
GO:0009950
dorsal/ventral axis specification
The establishment, maintenance and elaboration of the dorsal/ventral axis. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
GOC:dph
GOC:go_curators
GOC:tb
dorsal-ventral axis specification
GOC:mah
dorsoventral axis specification
GOC:mah
dorsal/ventral axis determination
GOC:dph
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
dorsal-ventral pattern formation
dorsoventral pattern formation
dorsal/ventral pattern specification
biological_process
GO:0009953
dorsal/ventral pattern formation
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism.
GOC:dph
GOC:go_curators
GOC:isa_complete
GOC:tb
dorsal-ventral pattern formation
GOC:mah
dorsoventral pattern formation
GOC:mah
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008151
GO:0050875
cell physiology
cellular physiological process
cell growth and/or maintenance
biological_process
GO:0009987
cellular process
Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
GOC:isa_complete
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
biological_process
GO:0009991
response to extracellular stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus.
GOC:go_curators
The infolding of a membrane.
biological_process
GO:0010324
membrane invagination
The infolding of a membrane.
GOC:tb
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Reactome:REACT_100537
Reactome:REACT_101147
Reactome:REACT_101952
Reactome:REACT_105649
Reactome:REACT_108313
Reactome:REACT_29068
Reactome:REACT_34240
Reactome:REACT_71
Reactome:REACT_78136
Reactome:REACT_78959
Reactome:REACT_79662
Reactome:REACT_85241
Reactome:REACT_85359
Reactome:REACT_86357
Reactome:REACT_89816
Reactome:REACT_91657
Reactome:REACT_91965
Reactome:REACT_93586
Reactome:REACT_93968
Reactome:REACT_94814
Reactome:REACT_98256
Wikipedia:Gene_expression
biological_process
GO:0010467
gene expression
The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
Reactome:REACT_100537
Gene Expression, Xenopus tropicalis
Reactome:REACT_101147
Gene Expression, Danio rerio
Reactome:REACT_101952
Gene Expression, Sus scrofa
Reactome:REACT_105649
Gene Expression, Drosophila melanogaster
Reactome:REACT_108313
Gene Expression, Caenorhabditis elegans
Reactome:REACT_29068
Gene Expression, Escherichia coli
Reactome:REACT_34240
Gene Expression, Staphylococcus aureus N315
Reactome:REACT_71
Gene Expression, Homo sapiens
Reactome:REACT_78136
Gene Expression, Mus musculus
Reactome:REACT_78959
Gene Expression, Taeniopygia guttata
Reactome:REACT_79662
Gene Expression, Plasmodium falciparum
Reactome:REACT_85241
Gene Expression, Oryza sativa
Reactome:REACT_85359
Gene Expression, Gallus gallus
Reactome:REACT_86357
Gene Expression, Canis familiaris
Reactome:REACT_89816
Gene Expression, Mycobacterium tuberculosis
Reactome:REACT_91657
Gene Expression, Arabidopsis thaliana
Reactome:REACT_91965
Gene Expression, Rattus norvegicus
Reactome:REACT_93586
Gene Expression, Dictyostelium discoideum
Reactome:REACT_93968
Gene Expression, Bos taurus
Reactome:REACT_94814
Gene Expression, Schizosaccharomyces pombe
Reactome:REACT_98256
Gene Expression, Saccharomyces cerevisiae
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Wikipedia:Regulation_of_gene_expression
regulation of protein expression
biological_process
regulation of gene product expression
GO:0010468
This class covers any process that regulates the rate of production of a mature gene product, and so includes processes that regulate that rate by regulating the level, stability or availability of intermediates in the process of gene expression. For example, it covers any process that regulates the level, stability or availability of mRNA or circRNA for translation and thereby regulates the rate of production of the encoded protein via translation.
regulation of gene expression
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
GOC:dph
GOC:tb
regulation of protein expression
GOC:curators
regulation of gene product expression
GOC:curators
Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
biological_process
GO:0010941
regulation of cell death
Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.
GOC:dph
GOC:tb
A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0044235
GO:0071842
cell organisation
cellular component organisation at cellular level
cellular component organisation in other organism
cellular component organization at cellular level
cellular component organization in other organism
biological_process
cell organization and biogenesis
GO:0016043
cellular component organization
A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GOC:ai
GOC:jl
GOC:mah
cellular component organisation at cellular level
GOC:mah
cellular component organisation in other organism
GOC:mah
cell organization and biogenesis
GOC:mah
The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GO:0048591
cellular growth
growth of cell
biological_process
cell expansion
metabolic process resulting in cell growth
metabolism resulting in cell growth
non-developmental cell growth
non-developmental growth of a unicellular organism
GO:0016049
cell growth
The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.
GOC:ai
non-developmental cell growth
GOC:mah
non-developmental growth of a unicellular organism
GOC:mah
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0006899
vesicle transport
vesicular transport
nonselective vesicle transport
biological_process
protein sorting along secretory pathway
vesicle trafficking
GO:0016192
vesicle-mediated transport
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GOC:ai
GOC:mah
ISBN:08789310662000
vesicular transport
GOC:mah
OBSOLETE. A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.
GO:0008219
GO:0012501
Wikipedia:Death
biological_process
GO:0016265
This term was made obsolete because it refers to a phenotype. When death of a cell or tissue is a result of a true biological process, this should be captured using 'programmed cell death' or one of its descendants.
obsolete death
true
OBSOLETE. A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.
GOC:mah
GOC:mtg_apoptosis
ISBN:0877797099
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
Wikipedia:Cell_migration
biological_process
GO:0016477
cell migration
The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
GOC:cjm
GOC:dph
GOC:ems
GOC:pf
http://en.wikipedia.org/wiki/Cell_migration
The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster.
male courtship behaviour, veined wing vibration
biological_process
male courtship behavior, wing vibration
male courtship behaviour, wing vibration
GO:0016545
male courtship behavior, veined wing vibration
The process during courtship where the male insect vibrates his wings. An example of this is found in Drosophila melanogaster.
GOC:mtg_sensu
PMID:11092827
The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
egg laying
egg-laying
Wikipedia:Oviposition
biological_process
GO:0018991
oviposition
The deposition of eggs (either fertilized or not) upon a surface or into a medium such as water.
GOC:ems
The specific behavior of an organism that is associated with reproduction.
GO:0033057
reproductive behavior in a multicellular organism
reproductive behaviour
multicellular organism reproductive behavior
biological_process
GO:0019098
reproductive behavior
The specific behavior of an organism that is associated with reproduction.
GOC:jl
GOC:pr
reproductive behavior in a multicellular organism
GOC:curators
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
regulation of metabolism
biological_process
GO:0019222
regulation of metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GOC:go_curators
A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
Wikipedia:Sexual_reproduction
biological_process
GO:0019953
Sexual reproduction may be seen as the regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and Fungi); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times.
sexual reproduction
A reproduction process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny.
GOC:jl
ISBN:0387520546
http://en.wikipedia.org/wiki/Sexual_reproduction
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
biological_process
GO:0022402
cell cycle process
The cellular process that ensures successive accurate and complete genome replication and chromosome segregation.
GOC:isa_complete
GOC:mtg_cell_cycle
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
biological_process
GO:0022414
reproductive process
A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
GOC:dph
GOC:isa_complete
The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions.
biological_process
GO:0022610
biological adhesion
The attachment of a cell or organism to a substrate, another cell, or other organism. Biological adhesion includes intracellular attachment between membrane regions.
GOC:isa_complete
A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
multicellular organism dormancy process
spore dormancy process
biological_process
GO:0022611
In plants and animals, dormancy may be a response to environmental conditions such as seasonality or extreme heat, drought, or cold. In plants, dormancy may involve the formation of dormant buds, and may be preceded by the senescence of plant parts such as leaves in woody plants or most of the shoot system in herbaceous perennials. The exit from dormancy in vascular plants is marked by resumed growth of buds and/or growth of vascular cambium.
dormancy process
A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated.
GOC:PO_curators
GOC:isa_complete
PO_REF:00009
spore dormancy process
GOC:PO_curators
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
Wikipedia:Sleep
biological_process
diapause
dormancy
lethargus
GO:0030431
sleep
Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.
ISBN:0192800981
Behavior in a fully developed and mature organism.
adult behavioral response to stimulus
adult behaviour
adult behavioural response to stimulus
biological_process
GO:0030534
See also the biological process term 'behavior ; GO:0007610'.
adult behavior
Behavior in a fully developed and mature organism.
GOC:mah
ISBN:0877797099
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
biological_process
GO:0031667
response to nutrient levels
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
GOC:mah
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
GO:0050874
organismal physiological process
biological_process
GO:0032501
multicellular organismal process
Any biological process, occurring at the level of a multicellular organism, pertinent to its function.
GOC:curators
GOC:dph
GOC:isa_complete
GOC:tb
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
development
biological_process
GO:0032502
developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition.
GOC:isa_complete
The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
biological_process
GO:0032504
multicellular organism reproduction
The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents.
GOC:isa_complete
GOC:jid
The controlled release of a substance by a cell.
Wikipedia:Secretion
cellular secretion
biological_process
GO:0032940
secretion by cell
The controlled release of a substance by a cell.
GOC:mah
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
biological_process
GO:0033554
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular response to stress
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
biological_process
GO:0033555
multicellular organismal response to stress
Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
GOC:mah
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
Reactome:REACT_102000
Reactome:REACT_103710
Reactome:REACT_107293
Reactome:REACT_108179
Reactome:REACT_109042
Reactome:REACT_13
Reactome:REACT_28699
Reactome:REACT_29108
Reactome:REACT_32429
Reactome:REACT_33347
Reactome:REACT_34326
Reactome:REACT_55564
Reactome:REACT_77741
Reactome:REACT_82379
Reactome:REACT_86268
Reactome:REACT_90299
Reactome:REACT_91959
Reactome:REACT_93580
Reactome:REACT_95666
Reactome:REACT_98086
Reactome:REACT_99241
cellular nitrogen compound metabolism
biological_process
GO:0034641
cellular nitrogen compound metabolic process
The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells.
GOC:mah
Reactome:REACT_102000
Metabolism of amino acids and derivatives, Mycobacterium tuberculosis
Reactome:REACT_103710
Metabolism of amino acids and derivatives, Escherichia coli
Reactome:REACT_107293
Metabolism of amino acids and derivatives, Arabidopsis thaliana
Reactome:REACT_108179
Metabolism of amino acids and derivatives, Xenopus tropicalis
Reactome:REACT_109042
Metabolism of amino acids and derivatives, Sus scrofa
Reactome:REACT_13
Metabolism of amino acids and derivatives, Homo sapiens
Reactome:REACT_28699
Metabolism of amino acids and derivatives, Saccharomyces cerevisiae
Reactome:REACT_29108
Metabolism of amino acids and derivatives, Caenorhabditis elegans
Reactome:REACT_32429
Metabolism of amino acids and derivatives, Rattus norvegicus
Reactome:REACT_33347
Metabolism of amino acids and derivatives, Mus musculus
Reactome:REACT_34326
Metabolism of amino acids and derivatives, Staphylococcus aureus N315
Reactome:REACT_55564
Metabolism of amino acids and derivatives, Gallus gallus
Reactome:REACT_77741
Metabolism of amino acids and derivatives, Taeniopygia guttata
Reactome:REACT_82379
Metabolism of amino acids and derivatives, Bos taurus
Reactome:REACT_86268
Metabolism of amino acids and derivatives, Drosophila melanogaster
Reactome:REACT_90299
Metabolism of amino acids and derivatives, Oryza sativa
Reactome:REACT_91959
Metabolism of amino acids and derivatives, Plasmodium falciparum
Reactome:REACT_93580
Metabolism of amino acids and derivatives, Danio rerio
Reactome:REACT_95666
Metabolism of amino acids and derivatives, Canis familiaris
Reactome:REACT_98086
Metabolism of amino acids and derivatives, Dictyostelium discoideum
Reactome:REACT_99241
Metabolism of amino acids and derivatives, Schizosaccharomyces pombe
The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
hatching behaviour
biological_process
GO:0035187
hatching behavior
The specific behavior of an organism during the emergence from an egg shell. In Drosophila for example, the larva swings its head reiteratively through a semicircular arc, using its mouth hooks to tear apart the chorion in front of it and thus free itself from within the egg shell.
GOC:pr
PMID:10436051
The emergence of an immature organism from a protective structure.
biological_process
GO:0035188
hatching
The emergence of an immature organism from a protective structure.
GOC:dgh
GOC:isa_complete
ISBN:0198612001
The fluctuation in mating behavior that occurs over an approximately 24 hour cycle.
circadian mating behaviour
circadian mating rhythm
biological_process
GO:0035648
circadian mating behavior
The fluctuation in mating behavior that occurs over an approximately 24 hour cycle.
GOC:bf
GOC:dos
PMID:11470898
PMID:17276917
circadian mating behaviour
GOC:bf
circadian mating rhythm
GOC:dos
The increase in size or mass of an entire organism, a part of an organism or a cell.
GO:0048590
biological_process
growth pattern
non-developmental growth
GO:0040007
See also the biological process term 'cell growth ; GO:0016049'.
growth
The increase in size or mass of an entire organism, a part of an organism or a cell.
GOC:bf
GOC:ma
non-developmental growth
GOC:mah
Self-propelled movement of a cell or organism from one location to another.
biological_process
GO:0040011
locomotion
Self-propelled movement of a cell or organism from one location to another.
GOC:dgh
Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
biological_process
GO:0040029
regulation of gene expression, epigenetic
Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence.
PMID:10521337
PMID:11498582
The series of events that restore integrity to a damaged tissue, following an injury.
Wikipedia:Wound_healing
biological_process
GO:0042060
wound healing
The series of events that restore integrity to a damaged tissue, following an injury.
GOC:bf
PMID:15269788
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
response to chemical stimulus
response to chemical substance
biological_process
GO:0042221
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to chemical
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.
GOC:jl
response to chemical stimulus
GOC:dos
The directed movement of a motile cell or organism in response to an external stimulus.
Wikipedia:Taxis
directed movement in response to stimulus
biological_process
GO:0042330
taxis
The directed movement of a motile cell or organism in response to an external stimulus.
GOC:jl
ISBN:0192801023
The directed movement of a motile cell or organism in response to light.
GO:0046953
Wikipedia:Phototaxis
phototactic behavior
phototactic behaviour
taxis in response to light
biological_process
GO:0042331
phototaxis
The directed movement of a motile cell or organism in response to light.
GOC:jl
ISBN:0192800981
The directed movement of a motile cell or organism in response to gravity.
GO:0048062
geotactic behavior
geotactic behaviour
geotaxis
gravitactic behavior
gravitactic behaviour
taxis in response to gravitational stimulus
taxis in response to gravity
biological_process
GO:0042332
gravitaxis
The directed movement of a motile cell or organism in response to gravity.
GOC:jid
GOC:jl
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
biological_process
GO:0042594
response to starvation
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
GOC:go_curators
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
biological_process
GO:0042752
regulation of circadian rhythm
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
GOC:dph
GOC:jl
GOC:tb
The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
Wikipedia:Thermotaxis
taxis in response to temperature stimulus
biological_process
GO:0043052
thermotaxis
The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
GOC:cab1
WB_REF:cgc467
The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
photoentrainment of circadian clock
biological_process
GO:0043153
entrainment of circadian clock by photoperiod
The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night).
GOC:jl
photoentrainment of circadian clock
PMID:10217146
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0043283
biopolymer metabolic process
macromolecule metabolism
biological_process
GO:0043170
macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
CHEBI:33694
GOC:mah
biopolymer metabolic process
GOC:mtg_chebi_dec09
The chemical reactions and pathways by which individual cells transform chemical substances.
cellular metabolism
biological_process
intermediary metabolism
GO:0044237
cellular metabolic process
The chemical reactions and pathways by which individual cells transform chemical substances.
GOC:go_curators
intermediary metabolism
GOC:mah
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
primary metabolism
biological_process
GO:0044238
primary metabolic process
The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GOC:go_curators
http://www.metacyc.org
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
GO:0034960
cellular biopolymer metabolic process
cellular macromolecule metabolism
biological_process
GO:0044260
cellular macromolecule metabolic process
The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells.
CHEBI:33694
GOC:mah
cellular biopolymer metabolic process
GOC:mtg_chebi_dec09
A biological process that involves only one organism.
single organism process
biological_process
GO:0044699
single-organism process
A biological process that involves only one organism.
GOC:jl
A biological process that directly contributes to the process of producing new individuals, involving a single organism.
biological_process
GO:0044702
single organism reproductive process
A biological process that directly contributes to the process of producing new individuals, involving a single organism.
GOC:jl
A biological process that directly contributes to the process of producing new individuals, involving another organism.
biological_process
GO:0044703
multi-organism reproductive process
A biological process that directly contributes to the process of producing new individuals, involving another organism.
GOC:jl
The specific behavior of an organism that is associated with reproduction involving a single organism.
biological_process
GO:0044704
single-organism reproductive behavior
The specific behavior of an organism that is associated with reproduction involving a single organism.
GOC:jl
GOC:pr
The specific behavior of an organism that is associated with reproduction involving another organism of the same or different species.
biological_process
GO:0044705
multi-organism reproductive behavior
The specific behavior of an organism that is associated with reproduction involving another organism of the same or different species.
GOC:jl
GOC:pr
A multicellular organism process which involves another multicellular organism of the same or different species.
biological_process
GO:0044706
multi-multicellular organism process
A multicellular organism process which involves another multicellular organism of the same or different species.
GOC:jl
A biological process occurring within a single, multicellular organism.
biological_process
GO:0044707
single-multicellular organism process
A biological process occurring within a single, multicellular organism.
GOC:jl
The specific behavior of a single organism in response to external or internal stimuli.
biological_process
GO:0044708
single-organism behavior
The specific behavior of a single organism in response to external or internal stimuli.
GOC:jl
GOC:pr
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
biological_process
GO:0044710
single-organism metabolic process
A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism.
GOC:jl
Any process that is carried out at the cellular level, occurring within a single organism.
biological_process
GO:0044763
single-organism cellular process
Any process that is carried out at the cellular level, occurring within a single organism.
GOC:jl
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving a single organism.
biological_process
GO:0044765
single-organism transport
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore, involving a single organism.
GOC:jl
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
biological_process
GO:0044767
single-organism developmental process
A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism.
GOC:jl
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
male courtship behavior, song production
male courtship behaviour, song production
male courtship behaviour, veined wing generated song production
biological_process
GO:0045433
male courtship behavior, veined wing generated song production
The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.
GOC:mtg_sensu
PMID:11092827
The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
circadian locomotor activity rhythm
biological_process
GO:0045475
locomotor rhythm
The rhythm of the locomotor activity of an organism during its 24 hour activity cycle.
GOC:go_curators
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
heterocycle metabolism
biological_process
GO:0046483
heterocycle metabolic process
The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
CHEBI:5686
ISBN:0198506732
The controlled release of a substance by a cell or a tissue.
biological_process
GO:0046903
secretion
The controlled release of a substance by a cell or a tissue.
GOC:ai
The directed movement of a motile cell or organism away from the source of gravity.
GO:0048063
negative geotactic behavior
negative geotactic behaviour
negative gravitactic behavior
negative gravitactic behaviour
negative taxis in response to gravity
negative taxis in response to gravitytaxis in response to gravitational stimulus
biological_process
GO:0048060
negative gravitaxis
The directed movement of a motile cell or organism away from the source of gravity.
GOC:jid
The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster.
male courtship behavior, wing extension
male courtship behaviour, wing extension
male courtship behaviour, veined wing extension
biological_process
GO:0048065
male courtship behavior, veined wing extension
The process during courtship where the male insect extends his wings. An example of this process is found in Drosophila melanogaster.
GOC:jid
GOC:mtg_sensu
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
GO:0048267
physiological response to pain
biological_process
GO:0048265
response to pain
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
GOC:jid
PMID:10203867
PMID:12723742
PMID:12843304
Wikipedia:Pain
Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
biological_process
rhythm
GO:0048511
rhythmic process
Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism.
GOC:jid
The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
circadian rhythm behavior
biological_process
GO:0048512
circadian behavior
The specific behavior of an organism that recurs with a regularity of approximately 24 hours.
GOC:bf
GOC:go_curators
GOC:pr
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
organismal reproductive process
reproductive process in a multicellular organism
biological_process
GO:0048609
multicellular organismal reproductive process
The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs.
GOC:dph
GOC:jid
GOC:tb
organismal reproductive process
GOC:curators
reproductive process in a multicellular organism
GOC:curators
OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
cellular process involved in reproduction
biological_process
reproductive cellular process
GO:0048610
This process was made obsolete because we felt it not provide a particularly useful classification, and its very broad logical definition caused regular problems in our inference pipelines.
obsolete cellular process involved in reproduction
true
OBSOLETE. A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism.
GOC:dph
GOC:jid
reproductive cellular process
GOC:dph
GOC:tb
The process in which the anatomical structures of a tissue are generated and organized.
biological_process
GO:0048729
tissue morphogenesis
The process in which the anatomical structures of a tissue are generated and organized.
GOC:dph
GOC:jid
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
development of an anatomical structure
biological_process
GO:0048856
This term was added by GO_REF:0000021.
anatomical structure development
The biological process whose specific outcome is the progression of an anatomical structure from an initial condition to its mature state. This process begins with the formation of the structure and ends with the mature structure, whatever form that may be including its natural destruction. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
GOC:mtg_15jun06
GO_REF:0000021
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
cell locomotion
movement of a cell
biological_process
cell movement
GO:0048870
cell motility
Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
GOC:dgh
GOC:dph
GOC:isa_complete
GOC:mlg
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0050791
regulation of physiological process
biological_process
GO:0050789
regulation of biological process
Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GOC:ai
GOC:go_curators
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0051244
regulation of cellular physiological process
biological_process
GO:0050794
regulation of cellular process
Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GOC:go_curators
A organ system process carried out by any of the organs or tissues of neurological system.
neurophysiological process
biological_process
pan-neural process
GO:0050877
neurological system process
A organ system process carried out by any of the organs or tissues of neurological system.
GOC:ai
GOC:mtg_cardio
Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.
biological_process
GO:0050879
multicellular organismal movement
Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.
GOC:dph
GOC:mtg_muscle
GOC:tb
The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
Wikipedia:Cognition
biological_process
GO:0050890
cognition
The operation of the mind by which an organism becomes aware of objects of thought or perception; it includes the mental activities associated with thinking, learning, and memory.
ISBN:0721619908
http://www.onelook.com/
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GO:0051869
physiological response to stimulus
biological_process
GO:0050896
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
response to stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
GOC:ai
GOC:bf
The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
Wikipedia:Taste
gustation
sense of taste
taste
taste perception
biological_process
GO:0050909
sensory perception of taste
The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
GOC:ai
http://www.onelook.com/
The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
biological_process
GO:0050953
sensory perception of light stimulus
The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
mechanosensory perception
perception of mechanical stimulus
biological_process
chemi-mechanical coupling
GO:0050954
sensory perception of mechanical stimulus
The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
GOC:ai
The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).
Wikipedia:Touch
perception of touch
tactile sense
taction
tactition
biological_process
GO:0050975
sensory perception of touch
The series of events required for an organism to receive a touch stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. The perception of touch in animals is mediated by mechanoreceptors in the skin and mucous membranes and is the sense by which contact with objects gives evidence as to certain of their qualities. Different types of touch can be perceived (for example, light, coarse, pressure and tickling) and the stimulus may be external or internal (e.g. the feeling of a full stomach).
GOC:ai
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
establishment and maintenance of localization
establishment and maintenance of position
localisation
establishment and maintenance of cellular component location
establishment and maintenance of substance location
establishment and maintenance of substrate location
biological_process
GO:0051179
localization
Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
GOC:ai
GOC:dos
localisation
GOC:mah
Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
establishment of localisation
biological_process
GO:0051234
establishment of localization
Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
GOC:ai
GOC:dos
establishment of localisation
GOC:mah
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
Wikipedia:Cell_division
biological_process
GO:0051301
Note that this term differs from 'cytokinesis ; GO:0000910' in that cytokinesis does not include nuclear division.
cell division
The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
GOC:di
GOC:go_curators
GOC:pr
Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
GO:0007126
Wikipedia:Meiosis
biological_process
meiosis
GO:0051321
meiotic cell cycle
Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell via two nuclear divisions.
GOC:ai
A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane.
cellular localisation
establishment and maintenance of cellular localization
establishment and maintenance of localization in cell or cell membrane
intracellular localization
localization within cell
biological_process
GO:0051641
cellular localization
A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane.
GOC:tb
GOC:vw
cellular localisation
GOC:mah
Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
establishment of localisation in cell
establishment of intracellular localization
establishment of localization within cell
positioning within cell
biological_process
establishment of cellular localization
GO:0051649
establishment of localization in cell
Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
GOC:ai
GOC:dos
GOC:dph
GOC:tb
establishment of localisation in cell
GOC:mah
establishment of cellular localization
GOC:dph
GOC:tb
Any process in which a cell is transported to, and/or maintained in, a specific location.
cell localization
establishment and maintenance of cell localization
establishment and maintenance of localization of cell
localisation of cell
biological_process
GO:0051674
localization of cell
Any process in which a cell is transported to, and/or maintained in, a specific location.
GOC:ai
localisation of cell
GOC:mah
A biological process which involves another organism of the same or different species.
GO:0051706
interaction between organisms
physiological interaction between organisms
physiological interaction with other organism
biological_process
GO:0051704
multi-organism process
A biological process which involves another organism of the same or different species.
GOC:jl
Any process in which an organism has a behavioral effect on another organism of the same or different species.
GO:0023032
GO:0044709
behavioral interaction between organisms
behavioral interaction with other organism
behavioural interaction between organisms
behavioural interaction with other organism
behavioral signaling
behavioral signalling
biological_process
GO:0051705
multi-organism behavior
Any process in which an organism has a behavioral effect on another organism of the same or different species.
GOC:ai
behavioral signalling
GOC:mah
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
biological_process
GO:0051716
Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
cellular response to stimulus
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell.
GOC:bf
GOC:jl
Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
behavioural response to nutrient
biological_process
GO:0051780
behavioral response to nutrient
Any process that results in a change in the behavior of an organism as a result of a nutrient stimulus.
GOC:ai
The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
Wikipedia:Diapause
biological_process
GO:0055115
entry into diapause
The dormancy process that results in entry into diapause. Diapause is a neurohormonally mediated, dynamic state of low metabolic activity. Associated characteristics of this form of dormancy include reduced morphogenesis, increased resistance to environmental extremes, and altered or reduced behavioral activity. Full expression develops in a species-specific manner, usually in response to a number of environmental stimuli that precede unfavorable conditions. Once diapause has begun, metabolic activity is suppressed even if conditions favorable for development prevail. Once initiated, only certain stimuli are capable of releasing the organism from this state, and this characteristic is essential in distinguishing diapause from hibernation.
GOC:ds
GOC:jid
GOC:mah
The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
biological_process
GO:0055116
entry into reproductive diapause
The dormancy process that results in entry into reproductive diapause. Reproductive diapause is a form of diapause where the organism itself will remain fully active, including feeding and other routine activities, but the reproductive organs experience a tissue-specific reduction in metabolism, with characteristic triggering and releasing stimuli.
GOC:ds
GOC:jid
GOC:mah
An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
Wikipedia:Reflex
biological_process
GO:0060004
reflex
An automatic response to a stimulus beginning with a nerve impulse from a receptor and ending with the action of an effector such as a gland or a muscle. Signaling never reaches a level of consciousness.
GOC:dph
ISBN:087797099
The specific behavior of a male organism that is associated with reproduction.
biological_process
GO:0060179
male mating behavior
The specific behavior of a male organism that is associated with reproduction.
GOC:dph
GOC:pr
GOC:tb
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
biological_process
GO:0060255
regulation of macromolecule metabolic process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GOC:dph
GOC:tb
Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement.
biological_process
GO:0060361
flight
Self-propelled movement of an organism from one location to another through the air, usually by means of active wing movement.
GOC:dph
The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.
biological_process
GO:0060429
epithelium development
The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.
GOC:dph
GOC:mtg_lung
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO:0016044
Reactome:REACT_101524
Reactome:REACT_103082
Reactome:REACT_11123
Reactome:REACT_29278
Reactome:REACT_32337
Reactome:REACT_33741
Reactome:REACT_34084
Reactome:REACT_78213
Reactome:REACT_78288
Reactome:REACT_83546
Reactome:REACT_86557
Reactome:REACT_87431
Reactome:REACT_88307
Reactome:REACT_91154
Reactome:REACT_93714
Reactome:REACT_95586
Reactome:REACT_96516
Reactome:REACT_97881
cellular membrane organisation
cellular membrane organization
membrane organisation
biological_process
membrane organization and biogenesis
GO:0061024
membrane organization
A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GOC:dph
GOC:tb
Reactome:REACT_101524
Membrane Trafficking, Dictyostelium discoideum
Reactome:REACT_103082
Membrane Trafficking, Schizosaccharomyces pombe
Reactome:REACT_11123
Membrane Trafficking, Homo sapiens
Reactome:REACT_29278
Membrane Trafficking, Sus scrofa
Reactome:REACT_32337
Membrane Trafficking, Taeniopygia guttata
Reactome:REACT_33741
Membrane Trafficking, Bos taurus
Reactome:REACT_34084
Membrane Trafficking, Caenorhabditis elegans
Reactome:REACT_78213
Membrane Trafficking, Plasmodium falciparum
Reactome:REACT_78288
Membrane Trafficking, Xenopus tropicalis
Reactome:REACT_83546
Membrane Trafficking, Oryza sativa
Reactome:REACT_86557
Membrane Trafficking, Arabidopsis thaliana
Reactome:REACT_87431
Membrane Trafficking, Drosophila melanogaster
Reactome:REACT_88307
Membrane Trafficking, Mus musculus
Reactome:REACT_91154
Membrane Trafficking, Saccharomyces cerevisiae
Reactome:REACT_93714
Membrane Trafficking, Danio rerio
Reactome:REACT_95586
Membrane Trafficking, Gallus gallus
Reactome:REACT_96516
Membrane Trafficking, Canis familiaris
Reactome:REACT_97881
Membrane Trafficking, Rattus norvegicus
cellular membrane organisation
GOC:curators
membrane organisation
GOC:mah
membrane organization and biogenesis
GOC:mah
Any process that modulates a measurable attribute of any biological process, quality or function.
regulation
biological_process
GO:0065007
biological regulation
Any process that modulates a measurable attribute of any biological process, quality or function.
GOC:dph
GOC:isa_complete
GOC:mah
GOC:pr
GOC:vw
The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
biological_process
GO:0071684
organism emergence from protective structure
The developmental process in which an organism emerges from a surrounding protective structure such as an egg or pupa case.
GOC:mah
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
organic molecular entity metabolic process
organic molecular entity metabolism
organic substance metabolism
biological_process
GO:0071704
organic substance metabolic process
The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon.
CHEBI:50860
GOC:mah
A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0071841
cellular component organisation or biogenesis
cellular component organisation or biogenesis at cellular level
cellular component organization or biogenesis at cellular level
biological_process
GO:0071840
cellular component organization or biogenesis
A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GOC:mah
cellular component organisation or biogenesis
GOC:mah
cellular component organisation or biogenesis at cellular level
GOC:mah
Any cellular metabolic process involving nucleic acids.
biological_process
GO:0090304
nucleic acid metabolic process
Any cellular metabolic process involving nucleic acids.
GOC:dph
GOC:tb
The chemical reactions and pathways involving organic cyclic compound.
organic cyclic compound metabolism
biological_process
GO:1901360
organic cyclic compound metabolic process
The chemical reactions and pathways involving organic cyclic compound.
GOC:TermGenie
organic cyclic compound metabolism
GOC:TermGenie
A localization which involves only one organism.
single organism localization
biological_process
GO:1902578
single-organism localization
A localization which involves only one organism.
GOC:jl
GO_REF:0000089
PMID:1234
single organism localization
GOC:TermGenie
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
trait
quality
PATO:0000001
quality
A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities.
PATOC:GVG
A composite chromatic quality composed of hue, saturation and intensity parts.
relative color
quality
PATO:0000014
color
A composite chromatic quality composed of hue, saturation and intensity parts.
PATOC:GVG
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
quality
PATO:0000044
frequency
A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time.
Wikipedia:http://en.wikipedia.org/wiki/frequency
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
quality
PATO:0000047
biological sex
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
MGED:MGED
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
quality
PATO:0000051
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATOC:GVG
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
relational shape quality
quality
PATO:0000052
shape
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
quality
nutritional quality
PATO:0000056
trophic quality
An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Trophic_level
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
quality
PATO:0000057
occurrence
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence.
PATOC:GVG
quality
PATO:0000068
qualitative
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
quality
PATO:0000069
deviation(from_normal)
A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average.
PATOC:GVG
The number of entities of this type that are part of the whole organism.
presence or absence in organism
quantitative
quality
amount
count in organism
number
presence
PATO:0000070
count
The number of entities of this type that are part of the whole organism.
PATOC:GVG
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
quality
PATO:0000117
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
WordNet:WordNet
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
location
placement
relational spatial quality
quality
PATO:0000140
position
A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity.
PATOC:GVG
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
relational structural quality
quality
PATO:0000141
structure
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATOC:GVG
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
quality
PATO:0000161
rate
A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time.
PATOC:melissa
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
quality
PATO:0000169
viability
An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population.
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
behavioral quality
quality
behavioural quality
PATO:0000186
behavioral quality
An organismal quality inhering in a bearer by virtue of the bearer's behavior aggregate of the responses or reactions or movements in a given situation.
PATOC:GVG
A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.
quality
PATO:0000188
coordination
A behavioral quality inhering in a bearer by virtue of the bearer's having or lacking skillful and effective interaction of movement.
PATOC:GVG
A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.
quality
PATO:0000273
fecundity
A reproductive quality inhering in an organism or population by virtue of the bearer's potential reproductive capacity ad measured by the number of gametes.
Wikipedia:http://en.wikipedia.org/wiki/Fecundity
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
quality
PATO:0000274
fertility
A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction.
PATOC:GVG
A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
quality
PATO:0000277
female fertility
A fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
quality
PATO:0000279
male fertility
A fertility quality of inhering in a male by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
A frequency which is relatively high.
high frequency
quality
frequent
PATO:0000380
increased frequency
A frequency which is relatively high.
PATOC:GVG
A frequency which is relatively low.
low frequency
quality
infrequent
PATO:0000381
decreased frequency
A frequency which is relatively low.
PATOC:GVG
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
quality
PATO:0000383
female
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
MGED:MGED
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
quality
PATO:0000384
male
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
MGED:MGED
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
quality
PATO:0000422
auxotrophic
A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth.
Wikipedia:http://en.wikipedia.org/wiki/Auxotrophic
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
quality
aberrant
atypia
atypical
defective
PATO:0000460
abnormal
A quality inhering in a bearer by virtue of the bearer's deviation from normal or average.
PATOC:GVG
A quality denoting the lack of an entity.
absence
absent from organism
quality
PATO:0000462
absent
A quality denoting the lack of an entity.
thefreedictionary.:thefreedictionary.
A size quality which is relatively high.
quality
big
enlarged
great
large
PATO:0000586
increased size
A size quality which is relatively high.
PATOC:GVG
A size quality which is relatively low.
hypoplasia
underdeveloped
quality
small
tiny
PATO:0000587
decreased size
A size quality which is relatively low.
PATOC:GVG
A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.
hyperplasia
quality
overdeveloped
PATO:0000644
hyperplastic
A increased size quality inhering in an organ or tissue by virtue of the bearer's exhibiting increased number of cells.
Wikipedia:http://en.wikipedia.org/wiki/Hyperplastic
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.
hypoplasia
quality
underdeveloped
PATO:0000645
hypoplastic
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced number of cells within an organ or tissue.
PATOC:GVG
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
quality
PATO:0000718
lethal (sensu genetics)
A viability quality inhering in a population by virtue of the bearer's long term survival inability.
PATOC:GVG
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
quality
PATO:0000719
viable
A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population.
PATOC:GVG
A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.
quality
PATO:0000770
uncoordinated
A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.
PATOC:GVG
A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
quality
PATO:0000888
female fertile
A female fertility quality inhering in a female by virtue of the bearer's disposition to initiate, sustain, or support reproduction.
PATOC:GVG
A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
quality
PATO:0000891
male fertile
A male fertility quality inhering in a male by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
quality
female infertile
PATO:0000892
female sterile
A female fertility quality inhering in a female by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A rate which is relatively low.
slow rate
quality
PATO:0000911
decreased rate
A rate which is relatively low.
PATO:GVG
A rate which is relatively high.
fast rate
high rate
quality
PATO:0000912
increased rate
A rate which is relatively high.
PATO:GVG
A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
quality
PATO:0000955
fertile
A fertility quality inhering in a bearer by virtue of the bearer's being capable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
quality
PATO:0000956
sterile
A fertility quality inhering in a bearer by virtue of the bearer's being incapable of initiating, sustaining, or supporting reproduction.
PATOC:GVG
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
relational physical quality
quality
PATO:0001018
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATOC:GVG
A quality which inheres in an process.
quality of a process
quality of occurrent
quality of process
relational quality of occurrent
quality
PATO:0001236
process quality
A quality which inheres in an process.
PATOC:GVG
A quality which inheres in a continuant.
monadic quality of a continuant
multiply inhering quality of a physical entity
quality of a continuant
quality of a single physical entity
quality of an object
quality of continuant
monadic quality of an object
monadic quality of continuant
quality
PATO:0001241
physical object quality
A quality which inheres in a continuant.
PATOC:GVG
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
quality
PATO:0001291
electromagnetic (EM) radiation quality
A physical quality that inheres in an bearer by virtue of how that bearer interacts with electromagnetic radiation.
Wikipedia:http://en.wikipedia.org/wiki/Electromagnetic_radiation
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
quality
PATO:0001300
optical quality
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
PATOC:GVG
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
quality
PATO:0001434
reproductive quality
An organismal quality inhering in a bearer by virtue of the bearer's ability to produce new life or offspring.
WordNet:WordNet
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
sensitivity of occurrent
quality
PATO:0001457
sensitivity of a process
A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation.
PATOC:GVG
A sensitivity of a process which is higher than normal or average.
high sensitivity of occurrent
increased sensitivity of occurrent
quality
PATO:0001551
increased sensitivity of a process
A sensitivity of a process which is higher than normal or average.
PATO:GVG
A sensitivity of a process which is lower than normal or average.
decreased sensitivity of occurrent
low sensitivity of occurrent
quality
PATO:0001552
decreased sensitivity of a process
A sensitivity of a process which is lower than normal or average.
PATO:GVG
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
extra or missing physical or functional parts
has or lacks parts of type
mereological quality
number of
quality
cardinality
number
PATO:0001555
has number of
The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts.
PATOC:CJM
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
quality
PATO:0001558
lacking processual parts
A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity.
PATOC:GVG
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
quality
PATO:0001564
extra or missing processual parts
A quality of a process inhering in a bearer by virtue of the bearer's processual parts.
PATOC:GVG
A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.
atrophic
quality
PATO:0001623
atrophied
A size quality inhering in a bearer by virtue of a part or parts of the bearer's being decreased in size due to reduction in tissue mass through wasting.
Wiikipedia:Wasting
Wikipedia:Atrophy
A fecundity which is relatively low.
quality
PATO:0001696
decreased fecundity
A fecundity which is relatively low.
PATOC:GVG
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
quality
PATO:0001739
radiation quality
A quality that inheres in an bearer by virtue of how that bearer interacts with radiation.
PATOC:GVG
quality
PATO:0001760
female semi-fertile
quality
PATO:0001761
male semi-fertile
quality
PATO:0001762
male semi-sterile
quality
PATO:0001763
female semi-sterile
A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.
quality
PATO:0001768
semi-lethal (sensu genetics)
A viability quality inhering in a bearer or a population by virtue of some of it's members' inability to survive to reproduce.
PATOC:CVC
A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.
quality
cellular polarity
PATO:0001769
positional polarity
A positional quality inhering in a bearer by virtue of the bearer's location of features or characteristics along an axis.
PATOC:MAH
cellular polarity
PATOC:MAH
A viability quality inhering in a population by virtue of some of it's members' ability to survive.
quality
PATO:0001770
semi-viable
A viability quality inhering in a population by virtue of some of it's members' ability to survive.
PATOC:CVC
A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.
quality
grandchildless
PATO:0001862
lack of fertility in offspring
A fertility quality inhering in a bearer by virtue of the bearer's disposition to make its offspring sterile.
PATOC:GVG
quality
PATO:0001894
phenotypic sex
A quality that inheres in an entire organism or part of an organism.
quality
PATO:0001995
organismal quality
A quality that inheres in an entire organism or part of an organism.
PATOC:CJM
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
loss of
quality
PATO:0001999
lacks parts or has fewer parts of type
The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type.
PATOC:CJM
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
decreased number of
has decreased number of
has fewer physical parts of type
quality
PATO:0002001
has fewer parts of type
The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly.
PATOC:CJM
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
has extra parts of
has increased number of
having extra physical parts
having supernumerary physical parts
increased number of
quality
PATO:0002002
has extra parts of type
The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part.
PATOC:CJM
A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.
tumorous
quality
PATO:0002011
neoplastic
A structural quality which is held by a bearer when the latter's disposition the presence of abnormally proliferating masses of cells.
PATOC:MAH
A quality of a process that has a value that is increased compared to normal or average.
quality
PATO:0002051
increased occurrence
A quality of a process that has a value that is increased compared to normal or average.
PATOC:GVG
An occurrence which is relatively low.
quality
PATO:0002052
decreased occurrence
An occurrence which is relatively low.
PATOC:GVG
quality
PATO:0002062
physical quality of a process
Having extra or fewer parts.
quality
PATO:0002083
altered number of
Having extra or fewer parts.
PATOC:GVG
quality
PATO:0002290
aplastic/hypoplastic
A quality that has a value that is increased compared to normal or average.
quality
PATO:0002300
increased quality
A quality that has a value that is increased compared to normal or average.
PATOC:GVG
A quality that has a value that is decreased compared to normal or average.
quality
PATO:0002301
decreased quality
A quality that has a value that is decreased compared to normal or average.
PATOC:GVG
A quality of a process that has a value that is decreased compared to normal or average.
quality
PATO:0002302
decreased process quality
A quality of a process that has a value that is decreased compared to normal or average.
PATOC:GVG
A quality of an object that has a value that is decreased compared to normal or average.
quality
PATO:0002303
decreased object quality
A quality of an object that has a value that is decreased compared to normal or average.
PATOC:GVG
A quality of a process that has a value that is increased compared to normal or average.
quality
PATO:0002304
increased process quality
A quality of a process that has a value that is increased compared to normal or average.
PATOC:GVG
A quality of an object that has a value that is increased compared to normal or average.
quality
PATO:0002305
increased object quality
A quality of an object that has a value that is increased compared to normal or average.
PATOC:GVG
A temporal distribution pattern of process occurrences within a regulation/reference process.
quality
PATO:0002323
temporal distribution quality
A temporal distribution pattern of process occurrences within a regulation/reference process.
PATOC:LC
population
population of Drosophila
dependent continuant
population of cells
A fecundity which is relatively high
quality
PATO:0001695
increased fecundity
A fecundity which is relatively high
PATOC:GVG