format-version: 1.2 date: 24:05:2011 10:57 saved-by: jm auto-generated-by: OBO-Edit 2.0 default-namespace: image remark: autogenerated-by: DAG-Edit version 1.316 remark: saved-by: ma11 remark: date: Mon Feb 17 09:56:49 GMT 2003 remark: version: $Revision: 1.7 $ remark: Biological Imaging Methods CV remark: This CV covers sample preparation, visualization and imaging methods. remark: editor:Chris Woodcock (The Cell: An Image Library) remark: corrections and additions to chris@bio.umass.edu [Term] id: FBbi:00000000 name: dummy term is_obsolete: true created_by: jm creation_date: 2010-03-07T02:05:26Z [Term] id: FBbi:00000001 name: sample preparation method is_a: FBbi_root:00000000 ! Biological Imaging Method [Term] id: FBbi:00000002 name: chemically fixed tissue is_a: FBbi:00000001 ! sample preparation method [Term] id: FBbi:00000003 name: coagulating-fixative fixed tissue is_a: FBbi:00000002 ! chemically fixed tissue is_a: FBbi:00000263 ! solvent permeabilized [Term] id: FBbi:00000004 name: acetone fixed tissue is_a: FBbi:00000003 ! coagulating-fixative fixed tissue [Term] id: FBbi:00000005 name: acrolein fixed tissue is_a: FBbi:00000003 ! coagulating-fixative fixed tissue [Term] id: FBbi:00000006 name: ethanol fixed tissue is_a: FBbi:00000003 ! coagulating-fixative fixed tissue [Term] id: FBbi:00000007 name: methanol fixed tissue is_a: FBbi:00000003 ! coagulating-fixative fixed tissue [Term] id: FBbi:00000008 name: crosslinking-fixative fixed tissue is_a: FBbi:00000002 ! chemically fixed tissue [Term] id: FBbi:00000009 name: ethylene glycol-bis-succinimidyl succinate fixed tissue synonym: "EGS" RELATED [] is_a: FBbi:00000008 ! crosslinking-fixative fixed tissue [Term] id: FBbi:00000010 name: formaldehyde fixed tissue is_a: FBbi:00000008 ! crosslinking-fixative fixed tissue [Term] id: FBbi:00000011 name: glutaraldehyde fixed tissue is_a: FBbi:00000008 ! crosslinking-fixative fixed tissue [Term] id: FBbi:00000012 name: osmium tetroxide fixed tissue is_a: FBbi:00000008 ! crosslinking-fixative fixed tissue [Term] id: FBbi:00000013 name: cryofixed tissue is_a: FBbi:00000001 ! sample preparation method [Term] id: FBbi:00000014 name: unfixed tissue is_a: FBbi:00000001 ! sample preparation method disjoint_from: FBbi:00000002 ! chemically fixed tissue [Term] id: FBbi:00000015 name: embedded tissue is_a: FBbi:00000001 ! sample preparation method [Term] id: FBbi:00000016 name: tissue in plastic embedment is_a: FBbi:00000015 ! embedded tissue [Term] id: FBbi:00000017 name: tissue in acrylic resin embedment is_a: FBbi:00000016 ! tissue in plastic embedment [Term] id: FBbi:00000018 name: tissue in epoxy resin embedment is_a: FBbi:00000016 ! tissue in plastic embedment [Term] id: FBbi:00000019 name: tissue in wax embedment is_a: FBbi:00000015 ! embedded tissue [Term] id: FBbi:00000020 name: tissue in paraffin embedment is_a: FBbi:00000019 ! tissue in wax embedment [Term] id: FBbi:00000021 name: tissue in polyester wax embedment is_a: FBbi:00000019 ! tissue in wax embedment [Term] id: FBbi:00000022 name: tissue in polyethylene glycol embedment is_a: FBbi:00000019 ! tissue in wax embedment [Term] id: FBbi:00000023 name: unembedded tissue is_a: FBbi:00000001 ! sample preparation method disjoint_from: FBbi:00000015 ! embedded tissue [Term] id: FBbi:00000024 name: whole mounted tissue is_a: FBbi:00000001 ! sample preparation method disjoint_from: FBbi:00000026 ! sectioned tissue [Term] id: FBbi:00000025 name: living tissue def: "Unfixed fully hydrated tissue, typically employed to monitor dynamic changes in the living state." [XX:ISBN978-087969683-2 "Live Cell Imaging: A Laboratory Manual"] synonym: "live-cell imaging" RELATED [] is_a: FBbi:00000014 ! unfixed tissue [Term] id: FBbi:00000026 name: sectioned tissue is_a: FBbi:00000001 ! sample preparation method [Term] id: FBbi:00000027 name: cryostat-sectioned tissue is_a: FBbi:00000026 ! sectioned tissue [Term] id: FBbi:00000028 name: hand-sectioned tissue is_a: FBbi:00000026 ! sectioned tissue [Term] id: FBbi:00000029 name: microtome-sectioned tissue is_a: FBbi:00000026 ! sectioned tissue [Term] id: FBbi:00000030 name: vibratome-sectioned tissue is_a: FBbi:00000026 ! sectioned tissue [Term] id: FBbi:00000031 name: visualization method is_a: FBbi_root:00000000 ! Biological Imaging Method [Term] id: FBbi:00000032 name: endogenous substrate, non-vital dye is_obsolete: true [Term] id: FBbi:00000033 name: diagram is_a: FBbi:00000266 ! portrayed image [Term] id: FBbi:00000034 name: HA peptide tag is_a: FBbi:00000407 ! small genetically encoded tag [Term] id: FBbi:00000035 name: cresyl fast violet is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000036 name: endogenous substrate, diaminobenzidine is_obsolete: true [Term] id: FBbi:00000037 name: eosin def: "Staining with an aqueous or alcoholic solution of eosin Y,colors eosinophilic structures in various shades of red, pink and orange. The eosinophilic structures are generally composed of intracellular or extracellular protein. The Lewy bodies and Mallory bodies are examples of eosinophilic structures. Most of the cytoplasm is eosinophilic. Red blood cells are stained intensely red." [Wikipedia:http\://en.wikipedia.org/wiki/H%26E_stain] is_a: FBbi:00000460 ! non-specific protein affinity [Term] id: FBbi:00000038 name: ethidium bromide is_a: FBbi:00000422 ! membrane impermeant probe [Term] id: FBbi:00000039 name: fuchsin is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000040 name: giemsa is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000041 name: hematoxylin def: "The staining method involves application of hemalum, which is a complex formed from aluminium ions and oxidized haematoxylin. This colors nuclei of cells (and a few other objects, such as keratohyalin granules) blue. The staining of nuclei by hemalum does not require the presence of DNA and is probably due to binding of the dye-metal complex to arginine-rich basic nucleoproteins such as histones. The mechanism is different from that of nuclear staining by basic (cationic) dyes such as thionine or toluidine blue. Staining by basic dyes is prevented by chemical or enzymatic extraction of nucleic acids. Such extractions do not prevent staining of nuclei by hemalum." [Wikipedia:http\://en.wikipedia.org/wiki/H%26E_stain] is_a: FBbi:00000460 ! non-specific protein affinity [Term] id: FBbi:00000042 name: methyl green is_a: FBbi:00000422 ! membrane impermeant probe [Term] id: FBbi:00000043 name: methyl violet is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000044 name: nitro blue tetrazolium chloride is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000045 name: nuclear fast red is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000046 name: orcein is_a: FBbi:00000460 ! non-specific protein affinity [Term] id: FBbi:00000047 name: propidium iodide synonym: "PI" RELATED [] is_a: FBbi:00000422 ! membrane impermeant probe [Term] id: FBbi:00000048 name: SYTOX Green is_a: FBbi:00000422 ! membrane impermeant probe [Term] id: FBbi:00000049 name: toluidine blue is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000050 name: endogenous substrate, vital dye is_obsolete: true [Term] id: FBbi:00000051 name: acridine orange synonym: "AO" RELATED [] is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000052 name: Hoechst 33342 synonym: "HO342" RELATED [] synonym: "Hoechst 33342" RELATED [] is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000053 name: cationic colloidal gold is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000054 name: CMX rosamine (Mitotracker Red) synonym: "Mitotracker X" RELATED [] is_a: FBbi:00000411 ! probe for mitochondria [Term] id: FBbi:00000055 name: DiOC6 (3,3'-dihexyloxacarbocyanine iodide) synonym: "DiOC" RELATED [] is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000056 name: 4',6-diamidino-2-phenylindole (DAPI) synonym: "DAPI" RELATED [] is_a: FBbi:00000422 ! membrane impermeant probe [Term] id: FBbi:00000057 name: lucifer yellow is_a: FBbi:00000118 ! miscellaneous fill [Term] id: FBbi:00000058 name: methylene blue is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000059 name: Nile blue A is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000060 name: Nile red is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000061 name: pyronine is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000062 name: rhodamine 123 is_a: FBbi:00000411 ! probe for mitochondria [Term] id: FBbi:00000063 name: rhodamine B is_a: FBbi:00000567 ! optically-dense stain [Term] id: FBbi:00000064 name: SYTO Blue is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000065 name: SYTO Green is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000066 name: SYTO Orange is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000067 name: SYTO Red is_a: FBbi:00000421 ! membrane-permeant probe [Term] id: FBbi:00000068 name: YO-PRO-1 is_a: FBbi:00000422 ! membrane impermeant probe [Term] id: FBbi:00000069 name: endogenous substrate, dye conjugate is_obsolete: true [Term] id: FBbi:00000070 name: endogenous substrate, acidotropic-fluor conjugate synonym: "LysoTracker" RELATED [] is_obsolete: true [Term] id: FBbi:00000071 name: endogenous substrate, lectin-fluor conjugate is_obsolete: true [Term] id: FBbi:00000072 name: endogenous substrate, lectin-gold conjugate is_obsolete: true [Term] id: FBbi:00000073 name: taxol is_a: FBbi:00000459 ! affinity for specific proteins [Term] id: FBbi:00000074 name: endogenous substrate, phalloidin-fluor conjugate is_obsolete: true [Term] id: FBbi:00000075 name: exogenous label is_obsolete: true [Term] id: FBbi:00000076 name: genetically encoded enzyme is_a: FBbi:00000079 ! genetically encoded tag [Term] id: FBbi:00000077 name: beta-galactosidase synonym: "lacZ, X-gal" RELATED [] is_a: FBbi:00000076 ! genetically encoded enzyme [Term] id: FBbi:00000078 name: beta-glucuronidase synonym: "GUS, X-gluc" RELATED [] is_a: FBbi:00000076 ! genetically encoded enzyme [Term] id: FBbi:00000079 name: genetically encoded tag is_a: FBbi:00000410 ! macromolecular probe [Term] id: FBbi:00000080 name: EBFP synonym: "BFP" RELATED [] is_a: FBbi:00000435 ! Blue fluorescent protein from Aequorea victoria [Term] id: FBbi:00000081 name: ECFP synonym: "CFP" RELATED [] is_a: FBbi:00000436 ! Cyan fluorescent protein from Aequorea [Term] id: FBbi:00000082 name: EGFP synonym: "GFP" RELATED [] is_a: FBbi:00000437 ! Green fluorescent protein from Aequorea [Term] id: FBbi:00000083 name: Aequorea victoria red fluorescent protein tag synonym: "RFP" RELATED [] is_obsolete: true [Term] id: FBbi:00000084 name: EYFP synonym: "YFP" RELATED [] is_a: FBbi:00000439 ! Yellow fluorescent protein from Aequorea [Term] id: FBbi:00000085 name: DsRed synonym: "DsRed" RELATED [] is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa [Term] id: FBbi:00000086 name: c-MYC peptide tag is_a: FBbi:00000407 ! small genetically encoded tag [Term] id: FBbi:00000087 name: FLAG peptide tag is_a: FBbi:00000407 ! small genetically encoded tag [Term] id: FBbi:00000088 name: intracellular filling def: "visualization of the connected regions of a cell by filling with a label" [XX:newdbxref] is_a: FBbi:00000396 ! visualization of contiguous regions [Term] id: FBbi:00000089 name: tissue in vitreous ice embedment def: "Fully hydrated tissue rapidly frozen to produce vitrified water, and maintained continuously below the glass transition temperature of water (approximately -137 deg C" [PubMed:PMID\: 3043536 "Cryo-electron microscopy of vitrified specimens. Dubochet J, Adrian M, Chang JJ, Homo JC, Lepault J, McDowall AW, Schultz P. Q Rev Biophys. 1988 May;21(2):129-228"] synonym: "tissue in amorphous ice embedment" RELATED [] is_a: FBbi:00000015 ! embedded tissue created_by: jm creation_date: 2010-03-07T02:05:48Z [Term] id: FBbi:00000090 name: fluor labeled RNA fill is_a: FBbi:00000088 ! intracellular filling [Term] id: FBbi:00000091 name: 5-SFX fluorescein RNA fill is_a: FBbi:00000090 ! fluor labeled RNA fill [Term] id: FBbi:00000092 name: X-rhodamine RNA fill is_a: FBbi:00000090 ! fluor labeled RNA fill [Term] id: FBbi:00000093 name: permeabilized tissue def: "Tissue treated to make cell membranes permeable, typically for the purpose of allowing access by exogenous stains or substrates." [XX:newdbxref] is_a: FBbi:00000001 ! sample preparation method created_by: jm creation_date: 2010-03-07T02:26:37Z [Term] id: FBbi:00000094 name: fluor labeled protein fill is_a: FBbi:00000088 ! intracellular filling [Term] id: FBbi:00000095 name: fluor conjugated actin fill is_a: FBbi:00000094 ! fluor labeled protein fill [Term] id: FBbi:00000096 name: Alexa Fluor 488 actin fill is_obsolete: true [Term] id: FBbi:00000097 name: Alexa Fluor 568 actin fill is_obsolete: true [Term] id: FBbi:00000098 name: fluoresceine actin fill is_obsolete: true [Term] id: FBbi:00000099 name: rhodamine actin fill is_obsolete: true [Term] id: FBbi:00000100 name: phalloidin is_a: FBbi:00000459 ! affinity for specific proteins [Term] id: FBbi:00000101 name: Alexa Fluor 350 phalloidin fill is_obsolete: true [Term] id: FBbi:00000102 name: Alexa Fluor 488 phalloidin fill is_obsolete: true [Term] id: FBbi:00000103 name: eosin phalloidin fill is_obsolete: true [Term] id: FBbi:00000104 name: fluoresceine phalloidin fill is_obsolete: true [Term] id: FBbi:00000105 name: Oregon Green 488 phalloidin fill is_obsolete: true [Term] id: FBbi:00000106 name: Oregon Green 514 phalloidin fill is_obsolete: true [Term] id: FBbi:00000107 name: rhodamine phalloidin fill is_obsolete: true [Term] id: FBbi:00000108 name: Texas Red-X phalloidin fill is_obsolete: true [Term] id: FBbi:00000109 name: fluor conjugated tubulin fill is_a: FBbi:00000094 ! fluor labeled protein fill [Term] id: FBbi:00000110 name: Oregon Green 514 tubulin fill is_obsolete: true [Term] id: FBbi:00000111 name: X-rhodamine tubulin fill is_obsolete: true [Term] id: FBbi:00000112 name: probe for lipid is_a: FBbi:00000403 ! small-molecule probe [Term] id: FBbi:00000113 name: DiA is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000114 name: DiD is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000115 name: DiI is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000116 name: DiO is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000117 name: DiR is_a: FBbi:00000112 ! probe for lipid [Term] id: FBbi:00000118 name: miscellaneous fill is_a: FBbi:00000088 ! intracellular filling [Term] id: FBbi:00000119 name: biotin ethylenediamine fill synonym: "Neurobiotin" RELATED [] is_a: FBbi:00000118 ! miscellaneous fill [Term] id: FBbi:00000120 name: cobalt fill is_a: FBbi:00000118 ! miscellaneous fill [Term] id: FBbi:00000121 name: silver-intensified cobalt fill is_a: FBbi:00000120 ! cobalt fill [Term] id: FBbi:00000122 name: metabolically incorporated radioisotope is_a: FBbi:00000397 ! visualization by chemical attribute [Term] id: FBbi:00000123 name: [14]C is_a: FBbi:00000122 ! metabolically incorporated radioisotope [Term] id: FBbi:00000124 name: [32]P is_a: FBbi:00000122 ! metabolically incorporated radioisotope [Term] id: FBbi:00000125 name: [33]P is_a: FBbi:00000122 ! metabolically incorporated radioisotope [Term] id: FBbi:00000126 name: [35]S is_a: FBbi:00000122 ! metabolically incorporated radioisotope [Term] id: FBbi:00000127 name: [3]H is_a: FBbi:00000122 ! metabolically incorporated radioisotope [Term] id: FBbi:00000128 name: label conjugated to probe is_a: FBbi:00000031 ! visualization method [Term] id: FBbi:00000129 name: glycerol permeabilized def: "tissue made permeable by the action of glycerol" [XX:newdbxref] synonym: "glycerinated tissue" RELATED [] is_a: FBbi:00000093 ! permeabilized tissue created_by: jm creation_date: 2010-03-07T02:37:12Z [Term] id: FBbi:00000130 name: labeled primary antibody is_a: FBbi:00000401 ! antibody [Term] id: FBbi:00000131 name: primary antibody-enzyme conjugate, substrate is_obsolete: true [Term] id: FBbi:00000132 name: alkaline phosphatase is_a: FBbi:00000456 ! enzyme label [Term] id: FBbi:00000133 name: primary antibody-alkaline phosphastase conjugate, DAB is_obsolete: true [Term] id: FBbi:00000134 name: primary antibody-alkaline phosphastase conjugate, ELF 97 phosphate is_obsolete: true [Term] id: FBbi:00000135 name: primary antibody-alkaline phosphastase conjugate, Vector Black is_obsolete: true [Term] id: FBbi:00000136 name: primary antibody-alkaline phosphastase conjugate, Vector Blue is_obsolete: true [Term] id: FBbi:00000137 name: primary antibody-alkaline phosphastase conjugate, Vector Red is_obsolete: true [Term] id: FBbi:00000138 name: horseradish peroxidase is_a: FBbi:00000456 ! enzyme label [Term] id: FBbi:00000139 name: primary antibody-horseradish peroxidase, 4-chloro-1-naphthol is_obsolete: true [Term] id: FBbi:00000140 name: primary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole is_obsolete: true [Term] id: FBbi:00000141 name: primary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine is_obsolete: true [Term] id: FBbi:00000142 name: primary antibody-horseradish peroxidase, Vector NovaRed is_obsolete: true [Term] id: FBbi:00000143 name: primary antibody-horseradish peroxidase, Vector SG is_obsolete: true [Term] id: FBbi:00000144 name: primary antibody-horseradish peroxidase, Vector VIP is_obsolete: true [Term] id: FBbi:00000145 name: primary antibody-fluor conjugate is_obsolete: true [Term] id: FBbi:00000146 name: primary antibody-aminomethylcoumarin acetate synonym: "AMCA" RELATED [] is_obsolete: true [Term] id: FBbi:00000147 name: primary antibody-Cascade blue is_obsolete: true [Term] id: FBbi:00000148 name: primary antibody-cyanine synonym: "Cy2" RELATED [] is_obsolete: true [Term] id: FBbi:00000149 name: primary antibody-fluorescein isothiocyanate synonym: "FITC" RELATED [] is_obsolete: true [Term] id: FBbi:00000150 name: primary antibody-indocarbocyanine synonym: "Cy3" RELATED [] is_obsolete: true [Term] id: FBbi:00000151 name: primary antibody-indodicarbocyanine synonym: "Cy5" RELATED [] is_obsolete: true [Term] id: FBbi:00000152 name: primary antibody-rhodamine red-X synonym: "RRX" RELATED [] is_obsolete: true [Term] id: FBbi:00000153 name: primary antibody-tetramethyl rhodamine isothiocyanate synonym: "TRITC" RELATED [] is_obsolete: true [Term] id: FBbi:00000154 name: primary antibody-Texas Red synonym: "TR" RELATED [] is_obsolete: true [Term] id: FBbi:00000155 name: primary antibody-gold conjugate is_obsolete: true [Term] id: FBbi:00000156 name: primary antibody plus labeled secondary antibody is_a: FBbi:00000401 ! antibody [Term] id: FBbi:00000157 name: secondary antibody-enzyme conjugate, substrate is_obsolete: true [Term] id: FBbi:00000158 name: acid phosphatase is_a: FBbi:00000456 ! enzyme label [Term] id: FBbi:00000159 name: secondary antibody-alkaline phosphastase conjugate, DAB is_obsolete: true [Term] id: FBbi:00000160 name: secondary antibody-alkaline phosphastase conjugate, ELF 97 phosphate is_obsolete: true [Term] id: FBbi:00000161 name: secondary antibody-alkaline phosphastase conjugate, Fast Blue B is_obsolete: true [Term] id: FBbi:00000162 name: secondary antibody-alkaline phosphastase conjugate, Fast Red is_obsolete: true [Term] id: FBbi:00000163 name: secondary antibody-alkaline phosphastase conjugate, INT is_obsolete: true [Term] id: FBbi:00000164 name: secondary antibody-alkaline phosphastase conjugate, Magenta Phos is_obsolete: true [Term] id: FBbi:00000165 name: secondary antibody-alkaline phosphastase conjugate, NABP is_obsolete: true [Term] id: FBbi:00000166 name: secondary antibody-alkaline phosphastase conjugate, NAGP is_obsolete: true [Term] id: FBbi:00000167 name: secondary antibody-alkaline phosphastase conjugate, NAMP is_obsolete: true [Term] id: FBbi:00000168 name: secondary antibody-alkaline phosphastase conjugate, NATP is_obsolete: true [Term] id: FBbi:00000169 name: secondary antibody-alkaline phosphastase conjugate, NBT is_obsolete: true [Term] id: FBbi:00000170 name: secondary antibody-alkaline phosphastase conjugate, Vector Black is_obsolete: true [Term] id: FBbi:00000171 name: secondary antibody-alkaline phosphastase conjugate, Vector Blue is_obsolete: true [Term] id: FBbi:00000172 name: secondary antibody-alkaline phosphastase conjugate, Vector Red is_obsolete: true [Term] id: FBbi:00000173 name: secondary antibody-alkaline phosphastase conjugate, BCIP is_obsolete: true [Term] id: FBbi:00000174 name: secondary antibody-beta-galactosidase, X-Gal is_obsolete: true [Term] id: FBbi:00000175 name: secondary antibody-beta-glucuronidase, X-gluc is_obsolete: true [Term] id: FBbi:00000176 name: esterase is_a: FBbi:00000456 ! enzyme label [Term] id: FBbi:00000177 name: secondary antibody-esterase, Naphthol-AS-D-chloroacetate is_obsolete: true [Term] id: FBbi:00000178 name: glucose oxidase is_a: FBbi:00000456 ! enzyme label [Term] id: FBbi:00000179 name: secondary antibody-glucose oxidase, TNBT is_obsolete: true [Term] id: FBbi:00000180 name: secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine is_obsolete: true [Term] id: FBbi:00000181 name: secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine silver enhanced is_obsolete: true [Term] id: FBbi:00000182 name: secondary antibody-horseradish peroxidase, 4-chloro-1-naphthol is_obsolete: true [Term] id: FBbi:00000183 name: secondary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole is_obsolete: true [Term] id: FBbi:00000184 name: secondary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine is_obsolete: true [Term] id: FBbi:00000185 name: secondary antibody-horseradish peroxidase, Vector NovaRed is_obsolete: true [Term] id: FBbi:00000186 name: secondary antibody-horseradish peroxidase, Vector SG is_obsolete: true [Term] id: FBbi:00000187 name: secondary antibody-horseradish peroxidase, Vector VIP is_obsolete: true [Term] id: FBbi:00000188 name: secondary antibody-phosphatase, Naphthol-AS-BI-phosphate is_obsolete: true [Term] id: FBbi:00000189 name: secondary antibody-fluor conjugate is_obsolete: true [Term] id: FBbi:00000190 name: secondary antibody-Alexa Fluor conjugate is_obsolete: true [Term] id: FBbi:00000191 name: aminomethylcoumarin synonym: "AMCA" RELATED [] is_a: FBbi:00000455 ! fluorescent label [Term] id: FBbi:00000192 name: Cascade blue is_a: FBbi:00000455 ! fluorescent label [Term] id: FBbi:00000193 name: secondary antibody-cyanine conjugate synonym: "Cy2" RELATED [] is_obsolete: true [Term] id: FBbi:00000194 name: secondary antibody-diaminotriazinylaminoflorescein conjugate synonym: "DTAF" RELATED [] is_obsolete: true [Term] id: FBbi:00000195 name: secondary antibody-fluorescein isothiocyanate conjugate synonym: "FITC" RELATED [] is_obsolete: true [Term] id: FBbi:00000196 name: secondary antibody-indocarbocyanine conjugate synonym: "Cy3" RELATED [] is_obsolete: true [Term] id: FBbi:00000197 name: secondary antibody-indodicarbocyanine conjugate synonym: "Cy5" RELATED [] is_obsolete: true [Term] id: FBbi:00000198 name: secondary antibody-lissamine rhodamine sulfonyl chloride synonym: "LSRC" RELATED [] is_obsolete: true [Term] id: FBbi:00000199 name: secondary antibody-rhodamine red-X conjugate synonym: "RRX" RELATED [] is_obsolete: true [Term] id: FBbi:00000200 name: secondary antibody-tetramethyl rhodamine isothiocyanate conjugate synonym: "TRITC" RELATED [] is_obsolete: true [Term] id: FBbi:00000201 name: secondary antibody-Texas red conjugate synonym: "TR" RELATED [] is_obsolete: true [Term] id: FBbi:00000202 name: gold is_a: FBbi:00000457 ! electron dense label [Term] id: FBbi:00000203 name: labeled nucleic acid probe is_obsolete: true [Term] id: FBbi:00000204 name: DNA probe is_a: FBbi:00000400 ! sequence-specific nucleic acid probe [Term] id: FBbi:00000205 name: biotin labeled DNA probe is_obsolete: true [Term] id: FBbi:00000206 name: digoxigenin labeled DNA probe is_obsolete: true [Term] id: FBbi:00000207 name: fluor labeled DNA probe is_obsolete: true [Term] id: FBbi:00000208 name: BODIPY TR-14-dUTP labeled DNA probe is_obsolete: true [Term] id: FBbi:00000209 name: bromodeoxyuridine labeled DNA probe is_obsolete: true [Term] id: FBbi:00000210 name: fluoresceine-12-dUTP labeled DNA probe is_obsolete: true [Term] id: FBbi:00000211 name: Oregon Green 488-5-dUTP labeled DNA probe is_obsolete: true [Term] id: FBbi:00000212 name: radioisotope labeled DNA probe is_obsolete: true [Term] id: FBbi:00000213 name: [32]P labeled DNA probe is_obsolete: true [Term] id: FBbi:00000214 name: [33]P labeled DNA probe is_obsolete: true [Term] id: FBbi:00000215 name: RNA probe is_a: FBbi:00000400 ! sequence-specific nucleic acid probe [Term] id: FBbi:00000216 name: biotin labeled RNA probe is_obsolete: true [Term] id: FBbi:00000217 name: digoxigenin labeled RNA probe is_obsolete: true [Term] id: FBbi:00000218 name: fluoroscein labeled RNA probe is_obsolete: true [Term] id: FBbi:00000219 name: radioisotope labeled RNA probe is_obsolete: true [Term] id: FBbi:00000220 name: [32]P labeled RNA probe is_obsolete: true [Term] id: FBbi:00000221 name: [33]P labeled RNA probe is_obsolete: true [Term] id: FBbi:00000222 name: imaging method is_a: FBbi_root:00000000 ! Biological Imaging Method [Term] id: FBbi:00000223 name: graphic illustration is_a: FBbi:00000266 ! portrayed image [Term] id: FBbi:00000224 name: computer graphic is_a: FBbi:00000223 ! graphic illustration [Term] id: FBbi:00000225 name: black and white graphic is_a: FBbi:00000224 ! computer graphic [Term] id: FBbi:00000226 name: color graphic is_a: FBbi:00000224 ! computer graphic [Term] id: FBbi:00000227 name: grey scale graphic is_a: FBbi:00000224 ! computer graphic [Term] id: FBbi:00000228 name: camera lucida assisted graphic is_a: FBbi:00000223 ! graphic illustration [Term] id: FBbi:00000229 name: free hand graphic is_a: FBbi:00000223 ! graphic illustration [Term] id: FBbi:00000230 name: line art graphic is_a: FBbi:00000223 ! graphic illustration [Term] id: FBbi:00000231 name: charcoal pencil graphic is_a: FBbi:00000230 ! line art graphic [Term] id: FBbi:00000232 name: colored pencil graphic is_a: FBbi:00000230 ! line art graphic [Term] id: FBbi:00000233 name: graphite pencil graphic is_a: FBbi:00000230 ! line art graphic [Term] id: FBbi:00000234 name: pen and ink graphic synonym: "black and white graphic" RELATED [] is_a: FBbi:00000230 ! line art graphic [Term] id: FBbi:00000235 name: painted graphic is_a: FBbi:00000230 ! line art graphic [Term] id: FBbi:00000236 name: acrylic painted graphic is_a: FBbi:00000235 ! painted graphic [Term] id: FBbi:00000237 name: oil painted graphic is_a: FBbi:00000235 ! painted graphic [Term] id: FBbi:00000238 name: pastel painted graphic is_a: FBbi:00000235 ! painted graphic [Term] id: FBbi:00000239 name: watercolor painted graphic is_a: FBbi:00000235 ! painted graphic [Term] id: FBbi:00000240 name: macroscopy def: "methods for imaging objects large enough to be observed by the unaided eye" [XX:] is_a: FBbi:00000265 ! recorded image [Term] id: FBbi:00000241 name: microscopy def: "methods for forming images of objects too small to be observed with the unaided eye" [XX:newdbxref] is_a: FBbi:00000265 ! recorded image [Term] id: FBbi:00000242 name: wide field light micrograph is_obsolete: true [Term] id: FBbi:00000243 name: bright-field microscopy is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000277 ! widefield illumination intersection_of: FBbi:00000346 FBbi:00000306 ! wide-field detection intersection_of: FBbi:00000346 FBbi:00000308 ! absorption of illumination [Term] id: FBbi:00000244 name: dark-field microscopy def: "imaging with rejection of the unscattered illumination (removal of the zero order component of the diffracted wave)" [XX:newdbxref] is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000292 ! darkfield illumination intersection_of: FBbi:00000346 FBbi:00000310 ! elastic scattering [Term] id: FBbi:00000245 name: differential interference contrast microscopy synonym: "DIC" RELATED [] synonym: "Nomarski" RELATED [] is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000312 ! optical path length gradient intersection_of: FBbi:00000346 FBbi:00000326 ! Wollaston prism intersection_of: FBbi:00000346 FBbi:00000350 ! polarized light illumination intersection_of: FBbi:00000346 FBbi:00000352 ! polarization-sensitive detection [Term] id: FBbi:00000246 name: fluorescence microscopy is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000316 ! fluorescence emission intersection_of: FBbi:00000346 FBbi:00000341 ! UV/visible/IR illumination [Term] id: FBbi:00000247 name: phase contrast microscopy is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000290 ! hollow-cone illumination intersection_of: FBbi:00000346 FBbi:00000311 ! refractive index [Term] id: FBbi:00000248 name: polarization microscopy is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000313 ! retardance intersection_of: FBbi:00000346 FBbi:00000350 ! polarized light illumination intersection_of: FBbi:00000346 FBbi:00000352 ! polarization-sensitive detection [Term] id: FBbi:00000249 name: time lapse microscopy is_a: FBbi:00000345 ! mode of light microscopy [Term] id: FBbi:00000250 name: narrow field light micrograph is_obsolete: true [Term] id: FBbi:00000251 name: confocal microscopy is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000278 ! narrowfield illumination intersection_of: FBbi:00000346 FBbi:00000307 ! narrow-field detection intersection_of: FBbi:00000346 FBbi:00000316 ! fluorescence emission [Term] id: FBbi:00000252 name: single-spot confocal microscopy is_a: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000346 FBbi:00000286 ! single point scanning intersection_of: FBbi:00000346 FBbi:00000394 ! spot detector [Term] id: FBbi:00000253 name: spinning disk confocal microscopy is_a: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000346 FBbi:00000288 ! spinning disk scanning intersection_of: FBbi:00000346 FBbi:00000294 ! charge coupled device (CCD) intersection_of: FBbi:00000346 FBbi:00000307 ! narrow-field detection [Term] id: FBbi:00000254 name: two-photon laser scanning microscopy is_a: FBbi:00000255 ! multi-photon microscopy [Term] id: FBbi:00000255 name: multi-photon microscopy is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000278 ! narrowfield illumination intersection_of: FBbi:00000346 FBbi:00000284 ! pulsed illumination intersection_of: FBbi:00000346 FBbi:00000316 ! fluorescence emission [Term] id: FBbi:00000256 name: mode of electron microscopy is_a: FBbi:00000343 ! microscopy with lenses intersection_of: FBbi:00000343 ! microscopy with lenses intersection_of: FBbi:00000346 FBbi:00000273 ! illumination by electrons [Term] id: FBbi:00000257 name: scanning electron microscopy (SEM) def: "image is formed by scanning the surface of the specimen with a beam of electrons in a raster pattern" [XX:newdbxref] is_a: FBbi:00000256 ! mode of electron microscopy intersection_of: FBbi:00000256 ! mode of electron microscopy intersection_of: FBbi:00000346 FBbi:00000278 ! narrowfield illumination [Term] id: FBbi:00000258 name: transmission electron microscopy (TEM) is_a: FBbi:00000256 ! mode of electron microscopy intersection_of: FBbi:00000256 ! mode of electron microscopy intersection_of: FBbi:00000346 FBbi:00000277 ! widefield illumination intersection_of: FBbi:00000346 FBbi:00000306 ! wide-field detection [Term] id: FBbi:00000259 name: atomic force microscopy def: "the scanning probe is maintained at a fixed distance above the surface e of the specimen by van der Waals forces" [XX:newdbxref] is_a: FBbi:00000344 ! scanning probe microscopy [Term] id: FBbi:00000260 name: X-ray micrograph is_a: FBbi:00000342 ! X-ray illumination [Term] id: FBbi:00000261 name: montage is_a: FBbi:00000266 ! portrayed image [Term] id: FBbi:00000262 name: detergent permeabilized def: "Membrane permeabilization by the action of ionic or non-ionic detergents" [XX:newdbxref] is_a: FBbi:00000093 ! permeabilized tissue created_by: jm creation_date: 2010-03-07T02:37:21Z [Term] id: FBbi:00000263 name: solvent permeabilized def: "permeabilization due to extraction of lipid from membranes by an organic solvent such as acetone or methanol." [XX:] is_a: FBbi:00000093 ! permeabilized tissue created_by: jm creation_date: 2010-03-07T02:37:29Z [Term] id: FBbi:00000264 name: saponin permeabilized def: "Saponin, a detergent-like molecule, preferentially forms holes in membranes that contain cholesterol." [XX:] synonym: "saponized tissue" RELATED [] is_a: FBbi:00000093 ! permeabilized tissue created_by: jm creation_date: 2010-03-07T02:43:41Z [Term] id: FBbi:00000265 name: recorded image def: "methods and devices used for capturing an image of a real object; distinct from images created by artwork" [XX:] synonym: "micrograph" RELATED [] synonym: "photograph" RELATED [] is_a: FBbi:00000222 ! imaging method created_by: jm creation_date: 2010-03-09T09:57:38Z [Term] id: FBbi:00000266 name: portrayed image def: "methods and devices used for creating images by some form of artwork, as distinct from capturing images by means of some recording device" [XX:newdbxref] synonym: "artwork" RELATED [] synonym: "drawing" RELATED [] is_a: FBbi:00000222 ! imaging method created_by: jm creation_date: 2010-03-09T10:04:40Z [Term] id: FBbi:00000267 name: animation def: "A form of graphical illustration that changes with time to give a sense of motion or represent dynamic changes in the portrayal." [XX:newdbxref] is_a: FBbi:00000224 ! computer graphic created_by: jm creation_date: 2010-03-09T10:12:11Z [Term] id: FBbi:00000268 name: illumination method def: "sources and methods for illumination" [XX:newdbxref] is_a: FBbi:00000343 ! microscopy with lenses created_by: jm creation_date: 2010-03-09T10:38:14Z [Term] id: FBbi:00000269 name: detection method def: "media and devices employed for recording the alterations in the illumination that result from its interaction with the sample" [XX:newdbxref] is_a: FBbi:00000343 ! microscopy with lenses created_by: jm creation_date: 2010-03-09T10:38:14Z [Term] id: FBbi:00000270 name: imaged parameter def: "The physical property of the specimen that leads to the modifications of the illumination that are recorded in the image." [XX:newdbxref] is_a: FBbi:00000343 ! microscopy with lenses created_by: jm creation_date: 2010-03-09T10:38:14Z [Term] id: FBbi:00000271 name: contrast-enhancing method is_a: FBbi:00000343 ! microscopy with lenses created_by: jm creation_date: 2010-03-09T10:38:14Z [Term] id: FBbi:00000272 name: illumination by photons is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:46:27Z [Term] id: FBbi:00000273 name: illumination by electrons is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:46:27Z [Term] id: FBbi:00000274 name: illumination by acoustic waves is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:46:27Z [Term] id: FBbi:00000275 name: illumination by neutrons is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:46:27Z [Term] id: FBbi:00000276 name: illumination by ions is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:46:27Z [Term] id: FBbi:00000277 name: widefield illumination def: "illumination that covers the entire field of view of the image-forming lens" [XX:newdbxref] is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000278 name: narrowfield illumination def: "illumination restricted to a small portion of the field of view of the imaging lens; often one or more diffraction limited spots" [XX:newdbxref] is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000279 name: coherent illumination is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000280 name: incoherent illumination is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000281 name: nearfield illumination is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000282 name: farfield illumination is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000283 name: continuous illumination is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000284 name: pulsed illumination def: "illumination that varies with time; often achieved with pulsed lasers for the purpose of generating very-high peak illumination power" [XX:newdbxref] is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000285 name: oblique illumination is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-09T10:50:41Z [Term] id: FBbi:00000286 name: single point scanning def: "illumination by a single spot of light that is scanned across the field of view" [XX:] is_a: FBbi:00000278 ! narrowfield illumination created_by: jm creation_date: 2010-03-09T10:51:29Z [Term] id: FBbi:00000287 name: multiple point scanning def: "illumination by multiple points of light simultaneously" [XX:] is_a: FBbi:00000278 ! narrowfield illumination created_by: jm creation_date: 2010-03-09T10:51:29Z [Term] id: FBbi:00000288 name: spinning disk scanning def: "scanning by multiple points of light arising from pinholes in a spinning disk that is illuminated by a widefield source" [XX:] is_a: FBbi:00000287 ! multiple point scanning created_by: jm creation_date: 2010-03-09T10:52:38Z [Term] id: FBbi:00000289 name: array scanning def: "Multiple points of illumination generated by a fixed array of sources." [XX:newdbxref] is_a: FBbi:00000287 ! multiple point scanning created_by: jm creation_date: 2010-03-09T10:52:38Z [Term] id: FBbi:00000290 name: hollow-cone illumination def: "illumination parallel or at small angles to the optical axis is attenuated or blocked by a stop" [XX:newdbxref] is_a: FBbi:00000285 ! oblique illumination created_by: jm creation_date: 2010-03-09T11:04:14Z [Term] id: FBbi:00000291 name: anaxial illumination def: "Illumination is distributed asymmetrically around the optic axis, typically achieved by a non-circular stop placed below the lower lens element and aperture of the condenser." [:] is_a: FBbi:00000285 ! oblique illumination created_by: jm creation_date: 2010-03-09T11:04:14Z [Term] id: FBbi:00000292 name: darkfield illumination def: "illumination restricted to angles that exceed the acceptance angle of the image-forming lens" [XX:newdbxref] is_a: FBbi:00000290 ! hollow-cone illumination created_by: jm creation_date: 2010-03-09T11:04:41Z [Term] id: FBbi:00000293 name: Rheinberg illumination def: "illumination at angles less than the acceptance angle of the image-forming lens is attenuated by a filter to give a colored background of unscattered light; higher angle illumination may be filtered to give a contrasting color" [XX:newdbxref] is_a: FBbi:00000290 ! hollow-cone illumination created_by: jm creation_date: 2010-03-09T11:04:41Z [Term] id: FBbi:00000294 name: charge coupled device (CCD) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000295 name: photomultiplier tube (PMT) is_a: FBbi:00000394 ! spot detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000296 name: photodiode is_a: FBbi:00000394 ! spot detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000297 name: avalanche photodiode (APD) is_a: FBbi:00000394 ! spot detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000298 name: silicon intensified target tube (SIT) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000299 name: intensified SIT (ISIT) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000300 name: intensified CCD (ICCD) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000301 name: electron multiplying CCD (EMCCD) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000302 name: electron bombardment CCD (EBCCD) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000303 name: film is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000304 name: complementary metal oxide semiconductor (CMOS) is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000305 name: piezo-electric device is_a: FBbi:00000394 ! spot detector created_by: jm creation_date: 2010-03-09T11:33:49Z [Term] id: FBbi:00000306 name: wide-field detection is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-09T12:45:35Z [Term] id: FBbi:00000307 name: narrow-field detection is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-09T12:45:35Z [Term] id: FBbi:00000308 name: absorption of illumination is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000309 name: inelastic scattering is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000310 name: elastic scattering is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000311 name: refractive index is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000312 name: optical path length gradient is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000313 name: retardance is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000314 name: stiffness is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000315 name: electron density is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000316 name: fluorescence emission is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000317 name: sub-nanosecond time-resolved fluorescence emission) is_a: FBbi:00000316 ! fluorescence emission created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000318 name: fluorescence polarization (polarization angle resolved fluorescence emission) is_a: FBbi:00000316 ! fluorescence emission created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000319 name: chemical composition is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000320 name: elevation is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-03-09T03:11:47Z [Term] id: FBbi:00000321 name: resolution-enhancing method def: "methods for increasing the resolution beyond the classical Abbe diffraction limit" [XX:newdbxref] is_a: FBbi:00000343 ! microscopy with lenses created_by: jm creation_date: 2010-03-09T03:12:34Z [Term] id: FBbi:00000322 name: optical method is_a: FBbi:00000271 ! contrast-enhancing method created_by: jm creation_date: 2010-03-09T03:14:53Z [Term] id: FBbi:00000323 name: computational method is_a: FBbi:00000271 ! contrast-enhancing method created_by: jm creation_date: 2010-03-09T03:14:53Z [Term] id: FBbi:00000324 name: in-focus phase contrast is_a: FBbi:00000353 ! modified objective lens created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000325 name: defocus phase contrast is_a: FBbi:00000322 ! optical method created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000326 name: Wollaston prism def: "a birefringent optical element typically used to split polarized illumination into two sets of parallel but displaced rays" [XX:newdbxref] is_a: FBbi:00000322 ! optical method created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000327 name: Hoffman modulation is_a: FBbi:00000353 ! modified objective lens created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000328 name: single sideband edge enhancement (SSBE) is_a: FBbi:00000353 ! modified objective lens created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000329 name: interference reflection contrast (IRM) is_a: FBbi:00000322 ! optical method created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000330 name: interference contrast is_a: FBbi:00000322 ! optical method created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000331 name: polarization contrast is_a: FBbi:00000322 ! optical method created_by: jm creation_date: 2010-03-09T03:20:14Z [Term] id: FBbi:00000332 name: structured illumination microscopy (SIM) is_a: FBbi:00000321 ! resolution-enhancing method created_by: jm creation_date: 2010-03-09T03:24:02Z [Term] id: FBbi:00000333 name: point-localization method is_a: FBbi:00000321 ! resolution-enhancing method created_by: jm creation_date: 2010-03-09T03:24:02Z [Term] id: FBbi:00000334 name: stimulated emission depletion (STED) is_a: FBbi:00000321 ! resolution-enhancing method intersection_of: FBbi:00000321 ! resolution-enhancing method intersection_of: FBbi:00000346 FBbi:00000278 ! narrowfield illumination intersection_of: FBbi:00000346 FBbi:00000390 ! emission-depletion illumination created_by: jm creation_date: 2010-03-09T03:24:02Z [Term] id: FBbi:00000335 name: PALM (photoactivation localization microscopy) is_a: FBbi:00000333 ! point-localization method intersection_of: FBbi:00000333 ! point-localization method intersection_of: FBbi:00000346 FBbi:00000387 ! photo-activation illumination created_by: jm creation_date: 2010-03-09T03:32:12Z [Term] id: FBbi:00000336 name: STORM (stochastic optical reconstruction microscopy) is_a: FBbi:00000333 ! point-localization method intersection_of: FBbi:00000333 ! point-localization method intersection_of: FBbi:00000346 FBbi:00000386 ! photo-switching illumination created_by: jm creation_date: 2010-03-09T03:32:12Z [Term] id: FBbi:00000337 name: FIONA (fluorescence imaging with one nanometer accuracy) is_a: FBbi:00000333 ! point-localization method created_by: jm creation_date: 2010-03-09T03:32:12Z [Term] id: FBbi:00000338 name: DOPI (defocussed orientation and position imaging) is_a: FBbi:00000333 ! point-localization method created_by: jm creation_date: 2010-03-09T03:32:12Z [Term] id: FBbi:00000339 name: PAINT (point accumulation for imaging in nanoscale topography) is_a: FBbi:00000333 ! point-localization method created_by: jm creation_date: 2010-03-09T03:32:12Z [Term] id: FBbi:00000340 name: saturated structured-illumination microscopy (SSIM) def: "structured illumination used at sufficiently high power to cause significant ground-state depletion of the imaged fluorophore, thus allowing for non-linear resolution enhancement" [XX:] is_a: FBbi:00000332 ! structured illumination microscopy (SIM) created_by: jm creation_date: 2010-03-09T03:32:29Z [Term] id: FBbi:00000341 name: UV/visible/IR illumination is_a: FBbi:00000272 ! illumination by photons created_by: jm creation_date: 2010-03-09T03:51:49Z [Term] id: FBbi:00000342 name: X-ray illumination is_a: FBbi:00000272 ! illumination by photons created_by: jm creation_date: 2010-03-09T03:51:49Z [Term] id: FBbi:00000343 name: microscopy with lenses is_a: FBbi:00000241 ! microscopy created_by: jm creation_date: 2010-03-09T04:04:04Z [Term] id: FBbi:00000344 name: scanning probe microscopy def: "imaging by means of a physical probe that passes over the sample" [XX:newdbxref] is_a: FBbi:00000241 ! microscopy created_by: jm creation_date: 2010-03-09T04:04:04Z [Term] id: FBbi:00000345 name: mode of light microscopy is_a: FBbi:00000343 ! microscopy with lenses intersection_of: FBbi:00000241 ! microscopy intersection_of: FBbi:00000346 FBbi:00000341 ! UV/visible/IR illumination created_by: jm creation_date: 2010-03-09T04:18:03Z [Term] id: FBbi:00000347 name: scanning tunneling microscopy is_a: FBbi:00000344 ! scanning probe microscopy created_by: jm creation_date: 2010-03-09T10:19:35Z [Term] id: FBbi:00000348 name: nearfield scanning optical microscopy (ANSOM) is_a: FBbi:00000344 ! scanning probe microscopy created_by: jm creation_date: 2010-03-09T10:19:35Z [Term] id: FBbi:00000349 name: ANSOM def: "Aperture-less NSOM." [XX:newdbxref] is_a: FBbi:00000348 ! nearfield scanning optical microscopy (ANSOM) created_by: jm creation_date: 2010-03-09T10:20:01Z [Term] id: FBbi:00000350 name: polarized light illumination is_a: FBbi:00000272 ! illumination by photons created_by: jm creation_date: 2010-03-09T10:23:41Z [Term] id: FBbi:00000351 name: orientation-independent polarization microscopy is_a: FBbi:00000248 ! polarization microscopy created_by: jm creation_date: 2010-03-09T10:25:08Z [Term] id: FBbi:00000352 name: polarization-sensitive detection is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-09T10:27:11Z [Term] id: FBbi:00000353 name: modified objective lens def: "Uses an objective with extra components to manipulate the wave front in the plane of the objective aperture." [XX:newdbxref] is_a: FBbi:00000322 ! optical method created_by: jm creation_date: 2010-03-09T10:41:27Z [Term] id: FBbi:00000354 name: linear method def: "a computational method that is linear in the mathematical sense, meaning that image intensity is conserved and the data remain suitable for all quantitative analyses" [XX:newdbxref] is_a: FBbi:00000323 ! computational method created_by: jm creation_date: 2010-03-09T11:09:35Z [Term] id: FBbi:00000355 name: non-linear method def: "computational method that are mathematically non-linear; image intensity is not conserved, and the data are in general not suitable for quantitative analyses of pixel values" [XX:newdbxref] is_a: FBbi:00000323 ! computational method disjoint_from: FBbi:00000354 ! linear method created_by: jm creation_date: 2010-03-09T11:09:35Z [Term] id: FBbi:00000356 name: Wiener filter is_a: FBbi:00000354 ! linear method created_by: jm creation_date: 2010-03-09T11:10:59Z [Term] id: FBbi:00000357 name: 3D-deconvolution is_a: FBbi:00000354 ! linear method created_by: jm creation_date: 2010-03-09T11:10:59Z [Term] id: FBbi:00000358 name: no-neighbors deblurring is_a: FBbi:00000355 ! non-linear method created_by: jm creation_date: 2010-03-09T11:11:56Z [Term] id: FBbi:00000359 name: nearest-neighbors deblurring is_a: FBbi:00000355 ! non-linear method created_by: jm creation_date: 2010-03-09T11:11:56Z [Term] id: FBbi:00000360 name: constrained iterative deconvolution is_a: FBbi:00000357 ! 3D-deconvolution created_by: jm creation_date: 2010-03-09T11:19:41Z [Term] id: FBbi:00000361 name: maximum likelihood deconvolution is_a: FBbi:00000357 ! 3D-deconvolution created_by: jm creation_date: 2010-03-09T11:19:41Z [Term] id: FBbi:00000362 name: blind deconvolution is_a: FBbi:00000357 ! 3D-deconvolution created_by: jm creation_date: 2010-03-09T11:19:41Z [Term] id: FBbi:00000363 name: exhaustive photon reassignment is_a: FBbi:00000357 ! 3D-deconvolution created_by: jm creation_date: 2010-03-09T11:19:42Z [Term] id: FBbi:00000364 name: light-sheet illumination def: "illumination in the form of a thin sheet of light directed perpendicular to the optic axis" [XX:] is_a: FBbi:00000285 ! oblique illumination created_by: jm creation_date: 2010-03-11T10:06:20Z [Term] id: FBbi:00000365 name: FLIP def: "Fluorescence loss in photobleaching; a method of determining whether two populations of fluorophore are in diffusive communication with one another by observing the decrease in brightness of one population when the other population is subjected to continuous photobleaching." [XX:newdbxref] is_a: FBbi:00000246 ! fluorescence microscopy intersection_of: FBbi:00000246 ! fluorescence microscopy intersection_of: FBbi:00000346 FBbi:00000384 ! photo-bleaching illumination created_by: jm creation_date: 2010-03-11T10:09:33Z [Term] id: FBbi:00000366 name: FRAP def: "Fluorescence loss in photobleaching; a method of determining the rate and extent of exchange between a localized population of fluorophore and a non-localized diffusible pool, by observing the rate of recovery of brightness of the localized population after photobleaching." [XX:-new-dbxref-] is_a: FBbi:00000246 ! fluorescence microscopy intersection_of: FBbi:00000246 ! fluorescence microscopy intersection_of: FBbi:00000346 FBbi:00000278 ! narrowfield illumination intersection_of: FBbi:00000346 FBbi:00000384 ! photo-bleaching illumination created_by: jm creation_date: 2010-03-11T10:09:33Z [Term] id: FBbi:00000367 name: FRET def: "Fluorescence (or Forster) resonance energy transfer; a method of estimating the distance between two fluorophores by measuring the extent of non-radiative energy transfer between the two. Experimentally, this involves selective excitation of one while observing emission from the other." [XX:newdbxref] is_a: FBbi:00000246 ! fluorescence microscopy created_by: jm creation_date: 2010-03-11T10:09:33Z [Term] id: FBbi:00000368 name: FLIM is_a: FBbi:00000246 ! fluorescence microscopy created_by: jm creation_date: 2010-03-11T10:09:33Z [Term] id: FBbi:00000369 name: SPIM def: "single (or selective) plane illumination." [XX:] is_a: FBbi:00000246 ! fluorescence microscopy intersection_of: FBbi:00000246 ! fluorescence microscopy intersection_of: FBbi:00000346 FBbi:00000364 ! light-sheet illumination created_by: jm creation_date: 2010-03-11T10:09:33Z [Term] id: FBbi:00000370 name: CARS def: "coherent Raman anti-Stokes microscopy" [XX:newdbxref] is_a: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000345 ! mode of light microscopy intersection_of: FBbi:00000346 FBbi:00000309 ! inelastic scattering intersection_of: FBbi:00000346 FBbi:00000319 ! chemical composition created_by: jm creation_date: 2010-03-11T10:13:20Z [Term] id: FBbi:00000371 name: OCT def: "optical coherence tomography; an interferometric method of imaging using back-scattered photons (elastic scattering)" [XX:newdbxref] is_a: FBbi:00000345 ! mode of light microscopy created_by: jm creation_date: 2010-03-11T10:32:19Z [Term] id: FBbi:00000372 name: secondary_electron imaging def: "image created using the electrons generated by ionization of a sample due to inelastic scattering of the primary beam of radiation" [XX:] is_a: FBbi:00000257 ! scanning electron microscopy (SEM) created_by: jm creation_date: 2010-03-12T08:34:44Z [Term] id: FBbi:00000373 name: back-scattered_electron imaging def: "imaged formed using electrons undergoing elastic scattering at very high angles, with emission of characteristic X-rays" [XX:newdbxref] is_a: FBbi:00000257 ! scanning electron microscopy (SEM) intersection_of: FBbi:00000256 ! mode of electron microscopy created_by: jm creation_date: 2010-03-12T08:40:37Z [Term] id: FBbi:00000374 name: detection of photons is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-12T08:54:56Z [Term] id: FBbi:00000375 name: detection of electrons is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-12T08:54:56Z [Term] id: FBbi:00000376 name: detection of acoustic waves is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-12T08:54:56Z [Term] id: FBbi:00000377 name: detection of current induced in the specimen is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-12T08:54:56Z [Term] id: FBbi:00000378 name: UV/visible/IR photons is_a: FBbi:00000374 ! detection of photons created_by: jm creation_date: 2010-03-12T08:55:29Z [Term] id: FBbi:00000379 name: X-ray photons is_a: FBbi:00000374 ! detection of photons created_by: jm creation_date: 2010-03-12T08:55:29Z [Term] id: FBbi:00000380 name: scanning-transmission electron microscopy is_a: FBbi:00000256 ! mode of electron microscopy created_by: jm creation_date: 2010-03-12T09:12:36Z [Term] id: FBbi:00000381 name: EELS imaging synonym: "EFTEM energy filtered TEM" RELATED [] synonym: "ESI electron spectroscopic imaging" RELATED [] is_a: FBbi:00000256 ! mode of electron microscopy created_by: jm creation_date: 2010-03-12T09:16:40Z [Term] id: FBbi:00000382 name: EDAX imaging is_a: FBbi:00000256 ! mode of electron microscopy created_by: jm creation_date: 2010-03-12T09:16:40Z [Term] id: FBbi:00000383 name: specimen_modifying_illumination def: "Illumination used for the purpose of inducing some observable change in the specimen during the course of an imaging session. This illumination may or may not be the same as the illumination used for imaging. Typically used in conjunction with live-cell imaging" [XX:] is_a: FBbi:00000268 ! illumination method created_by: jm creation_date: 2010-03-12T09:32:53Z [Term] id: FBbi:00000384 name: photo-bleaching illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000385 name: photo-ablation illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000386 name: photo-switching illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000387 name: photo-activation illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000388 name: uncaging illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000389 name: trapping illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000390 name: emission-depletion illumination is_a: FBbi:00000383 ! specimen_modifying_illumination created_by: jm creation_date: 2010-03-12T10:06:46Z [Term] id: FBbi:00000391 name: slit-scanning illumination def: "illumination in the shape of a thin line that is swept over the field of view" [XX:] is_a: FBbi:00000278 ! narrowfield illumination created_by: jm creation_date: 2010-03-12T10:31:26Z [Term] id: FBbi:00000392 name: slit-scan confocal def: "illumination and detection via a thin slit" [XX:] is_a: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000346 FBbi:00000391 ! slit-scanning illumination created_by: jm creation_date: 2010-03-12T10:32:36Z [Term] id: FBbi:00000393 name: array-scan confocal def: "Fixed array of sources focused to an array of spots that is swept over the specimen in raster fashion" [XX:newdbxref] is_a: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000251 ! confocal microscopy intersection_of: FBbi:00000346 FBbi:00000289 ! array scanning intersection_of: FBbi:00000346 FBbi:00000294 ! charge coupled device (CCD) created_by: jm creation_date: 2010-03-12T10:35:43Z [Term] id: FBbi:00000394 name: spot detector is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-12T10:39:24Z [Term] id: FBbi:00000395 name: area detector is_a: FBbi:00000269 ! detection method created_by: jm creation_date: 2010-03-12T10:39:24Z [Term] id: FBbi:00000396 name: visualization of contiguous regions def: "methods of visualization that differentiate between different regions or surfaces of the specimen based on contiguity" [XX:newdbxref] is_a: FBbi:00000031 ! visualization method created_by: jm creation_date: 2010-03-14T08:38:50Z [Term] id: FBbi:00000397 name: visualization by chemical attribute def: "methods of visualization that differentiate regions of the specimen on the basis of their chemical properties" [XX:] is_a: FBbi:00000031 ! visualization method created_by: jm creation_date: 2010-03-14T08:38:50Z [Term] id: FBbi:00000398 name: shadowing and plating def: "visualization by depositing a label on the surface of a specimen uniformly (plating), or from a particular direction so that surface topography becomes visible (shadowing)" [XX:] is_a: FBbi:00000396 ! visualization of contiguous regions relationship: FBbi:00000346 FBbi:00000419 ! freeze_fracture/freeze_etch created_by: jm creation_date: 2010-03-14T08:44:06Z [Term] id: FBbi:00000399 name: negative staining def: "visualization by exclusion of a stain in which the specimen is immersed; compare with \"positive staining." [XX:newdbxref] is_a: FBbi:00000396 ! visualization of contiguous regions created_by: jm creation_date: 2010-03-14T08:44:06Z [Term] id: FBbi:00000400 name: sequence-specific nucleic acid probe is_a: FBbi:00000410 ! macromolecular probe created_by: jm creation_date: 2010-03-14T09:07:35Z [Term] id: FBbi:00000401 name: antibody is_a: FBbi:00000410 ! macromolecular probe created_by: jm creation_date: 2010-03-14T09:07:35Z [Term] id: FBbi:00000402 name: lectin is_a: FBbi:00000410 ! macromolecular probe created_by: jm creation_date: 2010-03-14T09:07:35Z [Term] id: FBbi:00000403 name: small-molecule probe is_a: FBbi:00000397 ! visualization by chemical attribute created_by: jm creation_date: 2010-03-14T09:07:35Z [Term] id: FBbi:00000404 name: fluorescent dextran fill is_a: FBbi:00000088 ! intracellular filling created_by: jm creation_date: 2010-03-14T10:42:36Z [Term] id: FBbi:00000405 name: fluorescent protein tag is_a: FBbi:00000079 ! genetically encoded tag created_by: jm creation_date: 2010-03-14T10:54:20Z [Term] id: FBbi:00000406 name: probes for nucleic acid is_a: FBbi:00000403 ! small-molecule probe created_by: jm creation_date: 2010-03-14T09:25:57Z [Term] id: FBbi:00000407 name: small genetically encoded tag is_a: FBbi:00000079 ! genetically encoded tag created_by: jm creation_date: 2010-03-14T11:10:25Z [Term] id: FBbi:00000408 name: probe for protein is_a: FBbi:00000403 ! small-molecule probe created_by: jm creation_date: 2010-03-14T09:25:57Z [Term] id: FBbi:00000409 name: organelle-specific probe is_a: FBbi:00000403 ! small-molecule probe created_by: jm creation_date: 2010-03-14T09:25:57Z [Term] id: FBbi:00000410 name: macromolecular probe is_a: FBbi:00000397 ! visualization by chemical attribute created_by: jm creation_date: 2010-03-14T09:26:11Z [Term] id: FBbi:00000411 name: probe for mitochondria is_a: FBbi:00000409 ! organelle-specific probe created_by: jm creation_date: 2010-03-14T09:28:19Z [Term] id: FBbi:00000412 name: probe for endoplasmic reticulum is_a: FBbi:00000409 ! organelle-specific probe created_by: jm creation_date: 2010-03-14T09:28:19Z [Term] id: FBbi:00000413 name: probe for Golgi is_a: FBbi:00000409 ! organelle-specific probe created_by: jm creation_date: 2010-03-14T09:28:19Z [Term] id: FBbi:00000414 name: probe for lysosomes is_a: FBbi:00000409 ! organelle-specific probe created_by: jm creation_date: 2010-03-14T09:28:19Z [Term] id: FBbi:00000415 name: stain with broad specificity synonym: "positive staining" RELATED [] is_a: FBbi:00000403 ! small-molecule probe created_by: jm creation_date: 2010-03-15T11:51:34Z [Term] id: FBbi:00000416 name: tetracysteine tag is_a: FBbi:00000407 ! small genetically encoded tag created_by: jm creation_date: 2010-03-14T11:12:03Z [Term] id: FBbi:00000417 name: Hoechst 33258 is_a: FBbi:00000421 ! membrane-permeant probe created_by: jm creation_date: 2010-03-14T09:33:18Z [Term] id: FBbi:00000418 name: genetically encoded biotin tag is_a: FBbi:00000407 ! small genetically encoded tag created_by: jm creation_date: 2010-03-14T11:12:03Z [Term] id: FBbi:00000419 name: freeze_fracture/freeze_etch is_a: FBbi:00000013 ! cryofixed tissue intersection_of: FBbi:00000013 ! cryofixed tissue created_by: jm creation_date: 2010-03-17T01:55:02Z [Term] id: FBbi:00000420 name: fluorescent protein derived from Aequorea victoria is_a: FBbi:00000405 ! fluorescent protein tag created_by: jm creation_date: 2010-03-17T01:59:59Z [Term] id: FBbi:00000421 name: membrane-permeant probe is_a: FBbi:00000406 ! probes for nucleic acid created_by: jm creation_date: 2010-03-14T09:33:53Z [Term] id: FBbi:00000422 name: membrane impermeant probe is_a: FBbi:00000406 ! probes for nucleic acid created_by: jm creation_date: 2010-03-14T09:33:53Z [Term] id: FBbi:00000423 name: acridine homodimer is_a: FBbi:00000422 ! membrane impermeant probe created_by: jm creation_date: 2010-03-14T09:42:34Z [Term] id: FBbi:00000424 name: 7-amino-actinomycin D is_a: FBbi:00000422 ! membrane impermeant probe created_by: jm creation_date: 2010-03-14T09:42:34Z [Term] id: FBbi:00000425 name: conconavalin A is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000426 name: wheat germ agglutinin is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000427 name: Phaseolus vulgaris lectin PHA-L) is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000428 name: Arachis hypogaea (PNA) is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000429 name: Helix pomatia agglutinin is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000430 name: soybean agglutinin is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000431 name: cholera toxin B is_a: FBbi:00000402 ! lectin created_by: jm creation_date: 2010-03-14T09:48:57Z [Term] id: FBbi:00000432 name: peptide-nucleic acid probe is_a: FBbi:00000400 ! sequence-specific nucleic acid probe created_by: jm creation_date: 2010-03-14T09:52:30Z [Term] id: FBbi:00000433 name: fluorescent protein derived from Anthozoa is_a: FBbi:00000405 ! fluorescent protein tag created_by: jm creation_date: 2010-03-17T01:59:59Z [Term] id: FBbi:00000434 name: optical highlighter is_a: FBbi:00000405 ! fluorescent protein tag created_by: jm creation_date: 2010-03-17T01:59:59Z [Term] id: FBbi:00000435 name: Blue fluorescent protein from Aequorea victoria is_a: FBbi:00000420 ! fluorescent protein derived from Aequorea victoria created_by: jm creation_date: 2010-03-17T02:01:22Z [Term] id: FBbi:00000436 name: Cyan fluorescent protein from Aequorea is_a: FBbi:00000420 ! fluorescent protein derived from Aequorea victoria created_by: jm creation_date: 2010-03-17T02:01:22Z [Term] id: FBbi:00000437 name: Green fluorescent protein from Aequorea is_a: FBbi:00000420 ! fluorescent protein derived from Aequorea victoria created_by: jm creation_date: 2010-03-17T02:01:22Z [Term] id: FBbi:00000438 name: DiIC16 is_a: FBbi:00000112 ! probe for lipid created_by: jm creation_date: 2010-03-14T10:15:00Z [Term] id: FBbi:00000439 name: Yellow fluorescent protein from Aequorea is_a: FBbi:00000420 ! fluorescent protein derived from Aequorea victoria created_by: jm creation_date: 2010-03-17T02:01:22Z [Term] id: FBbi:00000440 name: Alexa Fluor 488 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000441 name: Alexa Fluor 546 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000442 name: Alexa Fluor 568 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000443 name: Alexa Fluor 555 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000444 name: Alexa Fluor 594 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000445 name: Alexa Fluor 610 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000446 name: Alexa Fluor 633 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000447 name: Alexa Fluor 647 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000448 name: Cy2 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000449 name: Cy3 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000450 name: Cy5 is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000451 name: Fluorescein (FITC) is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000452 name: Rhodamine is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000453 name: TexasRed def: "fluorophore with ex/em 589/615" [XX:] is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000454 name: Tetramethyl rhodamine (TRITC) def: "fluorophore derivative of rhodamine with ex/em 547/572" [XX:] is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:22:41Z [Term] id: FBbi:00000455 name: fluorescent label is_a: FBbi:00000128 ! label conjugated to probe created_by: jm creation_date: 2010-03-14T10:25:58Z [Term] id: FBbi:00000456 name: enzyme label is_a: FBbi:00000128 ! label conjugated to probe created_by: jm creation_date: 2010-03-14T10:25:58Z [Term] id: FBbi:00000457 name: electron dense label is_a: FBbi:00000128 ! label conjugated to probe created_by: jm creation_date: 2010-03-14T10:25:58Z [Term] id: FBbi:00000458 name: biotin is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-03-14T10:25:58Z [Term] id: FBbi:00000459 name: affinity for specific proteins is_a: FBbi:00000408 ! probe for protein created_by: jm creation_date: 2010-03-14T10:28:34Z [Term] id: FBbi:00000460 name: non-specific protein affinity is_a: FBbi:00000408 ! probe for protein created_by: jm creation_date: 2010-03-14T10:28:34Z [Term] id: FBbi:00000461 name: AzuriteFP is_a: FBbi:00000435 ! Blue fluorescent protein from Aequorea victoria created_by: jm creation_date: 2010-03-17T02:09:45Z [Term] id: FBbi:00000462 name: SiriusFP is_a: FBbi:00000435 ! Blue fluorescent protein from Aequorea victoria created_by: jm creation_date: 2010-03-17T02:09:45Z [Term] id: FBbi:00000463 name: non-immunological protein probe is_a: FBbi:00000410 ! macromolecular probe created_by: jm creation_date: 2010-03-14T10:32:01Z [Term] id: FBbi:00000464 name: alpha-bungarotoxin is_a: FBbi:00000463 ! non-immunological protein probe created_by: jm creation_date: 2010-03-14T10:36:52Z [Term] id: FBbi:00000465 name: botulinum toxin is_a: FBbi:00000463 ! non-immunological protein probe created_by: jm creation_date: 2010-03-14T10:36:52Z [Term] id: FBbi:00000466 name: tetrodotoxin is_a: FBbi:00000459 ! affinity for specific proteins created_by: jm creation_date: 2010-03-14T10:37:23Z [Term] id: FBbi:00000467 name: batrachatoxin is_a: FBbi:00000459 ! affinity for specific proteins created_by: jm creation_date: 2010-03-14T10:37:23Z [Term] id: FBbi:00000468 name: CeruleanFP is_a: FBbi:00000436 ! Cyan fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:10:21Z [Term] id: FBbi:00000469 name: CyPet is_a: FBbi:00000436 ! Cyan fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:10:21Z [Term] id: FBbi:00000470 name: SCFP is_a: FBbi:00000436 ! Cyan fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:10:21Z [Term] id: FBbi:00000471 name: EmeraldFP is_a: FBbi:00000437 ! Green fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:11:07Z [Term] id: FBbi:00000472 name: SuperfolderFP is_a: FBbi:00000437 ! Green fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:11:07Z [Term] id: FBbi:00000473 name: T-SapphireFP is_a: FBbi:00000437 ! Green fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:11:07Z [Term] id: FBbi:00000474 name: CitrineFP is_a: FBbi:00000439 ! Yellow fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:14:30Z [Term] id: FBbi:00000475 name: SYFP is_a: FBbi:00000439 ! Yellow fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:14:30Z [Term] id: FBbi:00000476 name: TopazFP is_a: FBbi:00000439 ! Yellow fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:14:30Z [Term] id: FBbi:00000477 name: VenusFP is_a: FBbi:00000439 ! Yellow fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:14:30Z [Term] id: FBbi:00000478 name: yPet is_a: FBbi:00000439 ! Yellow fluorescent protein from Aequorea created_by: jm creation_date: 2010-03-17T02:14:30Z [Term] id: FBbi:00000479 name: Blue fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000480 name: Cyan fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000481 name: Green fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000482 name: Orange fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000483 name: Red fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000484 name: Far-red fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000485 name: Yellow fluorescent proteins from Anthozoa is_a: FBbi:00000433 ! fluorescent protein derived from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:24Z [Term] id: FBbi:00000486 name: mTagBFP is_a: FBbi:00000479 ! Blue fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:16:38Z [Term] id: FBbi:00000487 name: AmCyanFP is_a: FBbi:00000480 ! Cyan fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:17:42Z [Term] id: FBbi:00000488 name: mCyFP is_a: FBbi:00000480 ! Cyan fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:17:42Z [Term] id: FBbi:00000489 name: mTFP1 is_a: FBbi:00000480 ! Cyan fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:17:42Z [Term] id: FBbi:00000490 name: TagCFP is_a: FBbi:00000480 ! Cyan fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:17:42Z [Term] id: FBbi:00000491 name: AQ143 is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000492 name: HcRed-tandemFP is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000493 name: KatushkaFP is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000494 name: mKateFP is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000495 name: mKate2FP is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000496 name: mPlumFP is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000497 name: tdKatuskaFP is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000498 name: tdRFP639 is_a: FBbi:00000484 ! Far-red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:19:04Z [Term] id: FBbi:00000499 name: AceFP is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000500 name: Azami GreenFP is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000501 name: CopGFP is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000502 name: mWasabiFP is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000503 name: TagGFP is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000504 name: TagGFP2 is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000505 name: ZsGreenFP is_a: FBbi:00000481 ! Green fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:20:00Z [Term] id: FBbi:00000506 name: DsRed-ExpressFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000507 name: DsRed-Express2FP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000508 name: DsRed-MaxFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000509 name: DsRed-monomerFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000510 name: DsRed2FP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000511 name: dTomatoFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000512 name: Kusabira OrangeFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000513 name: Kusabira OrangeFP2 is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000514 name: mOrangeFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000515 name: mOrange2FP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000516 name: TagRFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000517 name: TagRFP-T is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000518 name: tdTomatoFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000519 name: turboRFP is_a: FBbi:00000482 ! Orange fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:22:53Z [Term] id: FBbi:00000520 name: AsRed2FP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000521 name: eqFP611 is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000522 name: HcRed1FP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000523 name: JRedFP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000524 name: mAppleFP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000525 name: mCherryFP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000526 name: mRasberryFP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000527 name: mRFP1 is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000528 name: mRubyFP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000529 name: mStrawberryFP is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000530 name: tdRFP611 is_a: FBbi:00000483 ! Red fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:24:26Z [Term] id: FBbi:00000531 name: PhiYFP is_a: FBbi:00000485 ! Yellow fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:25:15Z [Term] id: FBbi:00000532 name: TagYFP is_a: FBbi:00000485 ! Yellow fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:25:15Z [Term] id: FBbi:00000533 name: TurboYFP is_a: FBbi:00000485 ! Yellow fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:25:15Z [Term] id: FBbi:00000534 name: ZsYellowFP is_a: FBbi:00000485 ! Yellow fluorescent proteins from Anthozoa created_by: jm creation_date: 2010-03-17T02:25:15Z [Term] id: FBbi:00000535 name: fluorescent protein timer is_a: FBbi:00000434 ! optical highlighter created_by: jm creation_date: 2010-03-17T02:27:50Z [Term] id: FBbi:00000536 name: photoactivatable fluorescent protein is_a: FBbi:00000434 ! optical highlighter created_by: jm creation_date: 2010-03-17T02:27:50Z [Term] id: FBbi:00000537 name: photoconvertible fluorescent protein is_a: FBbi:00000434 ! optical highlighter created_by: jm creation_date: 2010-03-17T02:27:50Z [Term] id: FBbi:00000538 name: photoconvertible/photoswitchable fluorescent protein is_a: FBbi:00000434 ! optical highlighter created_by: jm creation_date: 2010-03-17T02:27:50Z [Term] id: FBbi:00000539 name: photoswitchable fluorescent protein is_a: FBbi:00000434 ! optical highlighter created_by: jm creation_date: 2010-03-17T02:27:50Z [Term] id: FBbi:00000540 name: DsRed-ES FP is_a: FBbi:00000535 ! fluorescent protein timer created_by: jm creation_date: 2010-03-17T02:29:47Z [Term] id: FBbi:00000541 name: Fast-FT is_a: FBbi:00000535 ! fluorescent protein timer created_by: jm creation_date: 2010-03-17T02:29:47Z [Term] id: FBbi:00000542 name: Medium-FT is_a: FBbi:00000535 ! fluorescent protein timer created_by: jm creation_date: 2010-03-17T02:29:47Z [Term] id: FBbi:00000543 name: Slow-FT is_a: FBbi:00000535 ! fluorescent protein timer created_by: jm creation_date: 2010-03-17T02:29:47Z [Term] id: FBbi:00000544 name: PA-GFP is_a: FBbi:00000536 ! photoactivatable fluorescent protein created_by: jm creation_date: 2010-03-17T02:31:26Z [Term] id: FBbi:00000545 name: PA-CFP is_a: FBbi:00000536 ! photoactivatable fluorescent protein created_by: jm creation_date: 2010-03-17T02:31:26Z [Term] id: FBbi:00000546 name: PA-mCherry1FP is_a: FBbi:00000536 ! photoactivatable fluorescent protein created_by: jm creation_date: 2010-03-17T02:31:26Z [Term] id: FBbi:00000547 name: PA-mRFP is_a: FBbi:00000536 ! photoactivatable fluorescent protein created_by: jm creation_date: 2010-03-17T02:31:26Z [Term] id: FBbi:00000548 name: Phamret is_a: FBbi:00000536 ! photoactivatable fluorescent protein created_by: jm creation_date: 2010-03-17T02:31:26Z [Term] id: FBbi:00000549 name: Dendra2FP is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000550 name: dEOSFP is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000551 name: KaedeFP is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000552 name: mEOS2FP is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000553 name: mKikGR is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000554 name: wtEOSFP is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000555 name: wtKIikGR is_a: FBbi:00000537 ! photoconvertible fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:35Z [Term] id: FBbi:00000556 name: IrisFP is_a: FBbi:00000538 ! photoconvertible/photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:32:44Z [Term] id: FBbi:00000557 name: bsDronpa is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000558 name: Dronpa is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000559 name: Dronpa-3 is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000560 name: E2GFP is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000561 name: KFP1 is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000562 name: mTFP0.7 is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000563 name: PadronFP is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000564 name: rsCherryFP is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000565 name: rsCherryRevFP is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000566 name: rsFastLimeFP is_a: FBbi:00000539 ! photoswitchable fluorescent protein created_by: jm creation_date: 2010-03-17T02:34:12Z [Term] id: FBbi:00000567 name: optically-dense stain is_a: FBbi:00000415 ! stain with broad specificity created_by: jm creation_date: 2010-04-27T10:29:56Z [Term] id: FBbi:00000568 name: electron-dense stain is_a: FBbi:00000415 ! stain with broad specificity created_by: jm creation_date: 2010-04-27T10:29:56Z [Term] id: FBbi:00000569 name: uranyl salt is_a: FBbi:00000568 ! electron-dense stain created_by: jm creation_date: 2010-04-27T10:38:31Z [Term] id: FBbi:00000570 name: lead salt is_a: FBbi:00000568 ! electron-dense stain created_by: jm creation_date: 2010-04-27T10:38:31Z [Term] id: FBbi:00000571 name: osmium tetroxide is_a: FBbi:00000568 ! electron-dense stain created_by: jm creation_date: 2010-04-27T10:38:31Z [Term] id: FBbi:00000572 name: potassium permanganate is_a: FBbi:00000568 ! electron-dense stain created_by: jm creation_date: 2010-04-27T10:38:31Z [Term] id: FBbi:00000573 name: uranium compound is_a: FBbi:00000399 ! negative staining created_by: jm creation_date: 2010-04-27T10:39:43Z [Term] id: FBbi:00000574 name: molybdenum compound is_a: FBbi:00000399 ! negative staining created_by: jm creation_date: 2010-04-27T10:39:43Z [Term] id: FBbi:00000575 name: tungsten compound is_a: FBbi:00000399 ! negative staining created_by: jm creation_date: 2010-04-27T10:39:43Z [Term] id: FBbi:00000576 name: aurothioglucose is_a: FBbi:00000399 ! negative staining created_by: jm creation_date: 2010-04-27T10:39:43Z [Term] id: FBbi:00000577 name: other negative stain is_a: FBbi:00000399 ! negative staining created_by: jm creation_date: 2010-04-28T06:06:52Z [Term] id: FBbi:00000578 name: other radioisotope is_a: FBbi:00000122 ! metabolically incorporated radioisotope created_by: jm creation_date: 2010-04-28T06:08:02Z [Term] id: FBbi:00000579 name: isolated subcellular component def: "A fragment of a cell, subcellular organelle, or macromolecular complex." [XX:newdbxref] is_a: FBbi:00000001 ! sample preparation method created_by: jm creation_date: 2010-04-28T06:08:42Z [Term] id: FBbi:00000580 name: secondary electron generation def: "electrons generated by inelastic scattering of other radiation, the primary radiation." [XX:] is_a: FBbi:00000270 ! imaged parameter created_by: jm creation_date: 2010-05-04T12:25:14Z [Term] id: FBbi:00000581 name: critical_point dried specimen def: "specimen from which water has been removed by a process that avoids liquid-gas and solid-gas phase transitions." [XX:] is_a: FBbi:00000013 ! cryofixed tissue created_by: jm creation_date: 2010-05-04T12:31:12Z [Term] id: FBbi:00000582 name: unprocessed raw data def: "data as acquired, with no alterations that change the pixel values." [XX:] is_a: FBbi:00000323 ! computational method created_by: jm creation_date: 2010-05-04T12:42:17Z [Term] id: FBbi:00000583 name: lyophilized specimen def: "specimen from which water has been removed by evaporation under vacuum at a temperature below freezing." [XX:] is_a: FBbi:00000013 ! cryofixed tissue created_by: jm creation_date: 2010-05-04T12:49:31Z [Term] id: FBbi:00000584 name: X-Rhodamine def: "fluorophore derivative of rhodamine with ex/em 580/605" [XX:] is_a: FBbi:00000455 ! fluorescent label created_by: jm creation_date: 2010-05-04T09:02:54Z [Term] id: FBbi:00000585 name: serial block face SEM (SBFSEM) def: "A method of reconstructing 3D structure by combining serial sectioning with scanning EM." [PMID :15514700] is_a: FBbi:00000373 ! back-scattered_electron imaging created_by: jm creation_date: 2010-09-02T05:10:33Z [Term] id: FBbi:00000586 name: elastic scattering of electrons is_a: FBbi:00000310 ! elastic scattering created_by: jm creation_date: 2010-09-03T08:42:47Z [Term] id: FBbi:00000587 name: elastic scattering of photons is_a: FBbi:00000310 ! elastic scattering created_by: jm creation_date: 2010-09-03T08:42:47Z [Term] id: FBbi:00000588 name: inelastic scattering of electrons is_a: FBbi:00000309 ! inelastic scattering created_by: jm creation_date: 2010-09-03T08:43:42Z [Term] id: FBbi:00000589 name: inelastic scattering of photons (Raman scattering) is_a: FBbi:00000309 ! inelastic scattering created_by: jm creation_date: 2010-09-03T08:43:42Z [Term] id: FBbi:00000590 name: source of contrast def: "The source of the variation in the imaged parameter across the field of view." [XX:] is_a: FBbi:00000343 ! microscopy with lenses created_by: jm creation_date: 2010-09-03T08:53:13Z [Term] id: FBbi:00000591 name: differences in chemical composition is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000592 name: distribution of epitope is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000593 name: form birefringence is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000594 name: intrinsic birefringence is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000595 name: stress-induced birefringence is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000596 name: distribution of a specific nucleic acid sequence is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000597 name: distribution of a specific protein is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000598 name: differences in adsorption or binding of stain is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000599 name: boundaries between regions with different refractive index is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000600 name: differences in amount of elastic light scattering is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-03T09:55:12Z [Term] id: FBbi:00000601 name: differences in deposition of metal shadow is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-04T11:57:06Z [Term] id: FBbi:00000602 name: differences in intrinsic optical density is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-04T12:55:54Z [Term] id: FBbi:00000603 name: fluorescence polarization microscopy is_a: FBbi:00000246 ! fluorescence microscopy created_by: jm creation_date: 2010-09-04T01:28:20Z [Term] id: FBbi:00000604 name: compartmentalization of stain or label is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-04T01:31:54Z [Term] id: FBbi:00000605 name: differences in fluorescence lifetime is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-04T01:35:37Z [Term] id: FBbi:00000606 name: differences in orientation of fluorophore is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-04T01:36:45Z [Term] id: FBbi:00000607 name: intrinsic mass distribution is_a: FBbi:00000590 ! source of contrast created_by: jm creation_date: 2010-09-04T01:51:14Z [Term] id: FBbi:00000608 name: X-ray fluorescence is_a: FBbi:00000316 ! fluorescence emission created_by: jm creation_date: 2010-09-04T02:05:02Z [Term] id: FBbi:00000609 name: heat fixed tissue is_a: FBbi:00000001 ! sample preparation method created_by: jm creation_date: 2010-09-04T11:49:25Z [Term] id: FBbi:00000610 name: copper salt is_a: FBbi:00000568 ! electron-dense stain created_by: jm creation_date: 2010-09-04T11:56:02Z [Term] id: FBbi:00000611 name: dispersed cells in vitro is_a: FBbi:00000001 ! sample preparation method created_by: jm creation_date: 2010-09-28T04:35:54Z [Term] id: FBbi:00000612 name: fluorescent protein derived from Arabidopsis is_a: FBbi:00000405 ! fluorescent protein tag created_by: jm creation_date: 2011-05-23T09:33:44Z [Term] id: FBbi:00000613 name: vidicon tube camera is_a: FBbi:00000395 ! area detector created_by: jm creation_date: 2011-05-23T09:49:58Z [Term] id: FBbi:00000614 name: phototropin 2 is_a: FBbi:00000612 ! fluorescent protein derived from Arabidopsis created_by: jm creation_date: 2011-05-23T09:55:54Z [Term] id: FBbi:00000615 name: miniSOG is_a: FBbi:00000614 ! phototropin 2 created_by: jm creation_date: 2011-05-23T09:57:01Z [Term] id: FBbi:00000616 name: evanescent wave scattering synonym: "FTIR frustrated total internal reflection" RELATED [] is_a: FBbi:00000244 ! dark-field microscopy created_by: jm creation_date: 2011-05-23T10:09:41Z [Term] id: FBbi:00000617 name: evanescent wave microscopy synonym: "total internal reflection fluorescence TIRF" RELATED [] is_a: FBbi:00000246 ! fluorescence microscopy created_by: jm creation_date: 2011-05-23T10:10:58Z [Term] id: FBbi:00000618 name: ground state depletion scanning (GSD) is_a: FBbi:00000321 ! resolution-enhancing method created_by: jm creation_date: 2011-05-23T10:34:07Z [Term] id: FBbi:00000619 name: nearfield illumination relationship: FBbi:00000346 FBbi:00000617 ! evanescent wave microscopy created_by: jm creation_date: 2011-05-23T10:43:15Z [Term] id: FBbi:00000620 name: nearfield illumination relationship: FBbi:00000346 FBbi:00000616 ! evanescent wave scattering created_by: jm creation_date: 2011-05-23T10:44:03Z [Term] id: FBbi:00000621 name: freeze-substituted tissue is_a: FBbi:00000013 ! cryofixed tissue created_by: jm creation_date: 2011-05-23T10:51:16Z [Term] id: FBbi:00000622 name: high-voltage electron microscopy (HVEM) is_a: FBbi:00000258 ! transmission electron microscopy (TEM) created_by: jm creation_date: 2011-05-23T10:53:45Z [Term] id: FBbi:00000623 name: intermediate voltage electron microacopy (IVEM) is_a: FBbi:00000258 ! transmission electron microscopy (TEM) created_by: jm creation_date: 2011-05-23T10:53:45Z [Term] id: FBbi_root:00000000 name: Biological Imaging Method [Typedef] id: FBbi:00000346 name: makes_use_of def: "The child is an essential component of the parent device, or plays an essential role in performance of the parent function." [XX:newdbxref] domain: FBbi:00000222 ! imaging method range: FBbi:00000222 ! imaging method is_transitive: true created_by: jm creation_date: 2010-03-09T09:32:04Z [Typedef] id: is_a name: Is a