OBO-Edit 2.0
24:05:2011 10:57
image
1.2
jm
Biological Imaging Methods CV
This CV covers sample preparation, visualization and imaging methods.
corrections and additions to chris@bio.umass.edu
editor:Chris Woodcock (The Cell: An Image Library)
definition
database_cross_reference
has_obo_format_version
has_obo_namespace
has_related_synonym
The child is an essential component of the parent device, or plays an essential role in performance of the parent function.
jm
2010-03-09T09:32:04Z
image
FBbi:00000346
makes_use_of
jm
2010-03-07T02:05:26Z
image
FBbi:00000000
dummy term
true
image
FBbi:00000001
sample preparation method
image
FBbi:00000002
chemically fixed tissue
image
FBbi:00000003
coagulating-fixative fixed tissue
image
FBbi:00000004
acetone fixed tissue
image
FBbi:00000005
acrolein fixed tissue
image
FBbi:00000006
ethanol fixed tissue
image
FBbi:00000007
methanol fixed tissue
image
FBbi:00000008
crosslinking-fixative fixed tissue
image
EGS
FBbi:00000009
ethylene glycol-bis-succinimidyl succinate fixed tissue
image
FBbi:00000010
formaldehyde fixed tissue
image
FBbi:00000011
glutaraldehyde fixed tissue
image
FBbi:00000012
osmium tetroxide fixed tissue
image
FBbi:00000013
cryofixed tissue
image
FBbi:00000014
unfixed tissue
image
FBbi:00000015
embedded tissue
image
FBbi:00000016
tissue in plastic embedment
image
FBbi:00000017
tissue in acrylic resin embedment
image
FBbi:00000018
tissue in epoxy resin embedment
image
FBbi:00000019
tissue in wax embedment
image
FBbi:00000020
tissue in paraffin embedment
image
FBbi:00000021
tissue in polyester wax embedment
image
FBbi:00000022
tissue in polyethylene glycol embedment
image
FBbi:00000023
unembedded tissue
image
FBbi:00000024
whole mounted tissue
Unfixed fully hydrated tissue, typically employed to monitor dynamic changes in the living state.
image
live-cell imaging
FBbi:00000025
living tissue
Unfixed fully hydrated tissue, typically employed to monitor dynamic changes in the living state.
XX:ISBN978-087969683-2
image
FBbi:00000026
sectioned tissue
image
FBbi:00000027
cryostat-sectioned tissue
image
FBbi:00000028
hand-sectioned tissue
image
FBbi:00000029
microtome-sectioned tissue
image
FBbi:00000030
vibratome-sectioned tissue
image
FBbi:00000031
visualization method
image
FBbi:00000032
endogenous substrate, non-vital dye
true
image
FBbi:00000033
diagram
image
FBbi:00000034
HA peptide tag
image
FBbi:00000035
cresyl fast violet
image
FBbi:00000036
endogenous substrate, diaminobenzidine
true
Staining with an aqueous or alcoholic solution of eosin Y,colors eosinophilic structures in various shades of red, pink and orange. The eosinophilic structures are generally composed of intracellular or extracellular protein. The Lewy bodies and Mallory bodies are examples of eosinophilic structures. Most of the cytoplasm is eosinophilic. Red blood cells are stained intensely red.
image
FBbi:00000037
eosin
Staining with an aqueous or alcoholic solution of eosin Y,colors eosinophilic structures in various shades of red, pink and orange. The eosinophilic structures are generally composed of intracellular or extracellular protein. The Lewy bodies and Mallory bodies are examples of eosinophilic structures. Most of the cytoplasm is eosinophilic. Red blood cells are stained intensely red.
Wikipedia:http://en.wikipedia.org/wiki/H%26E_stain
image
FBbi:00000038
ethidium bromide
image
FBbi:00000039
fuchsin
image
FBbi:00000040
giemsa
The staining method involves application of hemalum, which is a complex formed from aluminium ions and oxidized haematoxylin. This colors nuclei of cells (and a few other objects, such as keratohyalin granules) blue. The staining of nuclei by hemalum does not require the presence of DNA and is probably due to binding of the dye-metal complex to arginine-rich basic nucleoproteins such as histones. The mechanism is different from that of nuclear staining by basic (cationic) dyes such as thionine or toluidine blue. Staining by basic dyes is prevented by chemical or enzymatic extraction of nucleic acids. Such extractions do not prevent staining of nuclei by hemalum.
image
FBbi:00000041
hematoxylin
The staining method involves application of hemalum, which is a complex formed from aluminium ions and oxidized haematoxylin. This colors nuclei of cells (and a few other objects, such as keratohyalin granules) blue. The staining of nuclei by hemalum does not require the presence of DNA and is probably due to binding of the dye-metal complex to arginine-rich basic nucleoproteins such as histones. The mechanism is different from that of nuclear staining by basic (cationic) dyes such as thionine or toluidine blue. Staining by basic dyes is prevented by chemical or enzymatic extraction of nucleic acids. Such extractions do not prevent staining of nuclei by hemalum.
Wikipedia:http://en.wikipedia.org/wiki/H%26E_stain
image
FBbi:00000042
methyl green
image
FBbi:00000043
methyl violet
image
FBbi:00000044
nitro blue tetrazolium chloride
image
FBbi:00000045
nuclear fast red
image
FBbi:00000046
orcein
image
PI
FBbi:00000047
propidium iodide
image
FBbi:00000048
SYTOX Green
image
FBbi:00000049
toluidine blue
image
FBbi:00000050
endogenous substrate, vital dye
true
image
AO
FBbi:00000051
acridine orange
image
HO342
Hoechst 33342
FBbi:00000052
Hoechst 33342
image
FBbi:00000053
cationic colloidal gold
image
Mitotracker X
FBbi:00000054
CMX rosamine (Mitotracker Red)
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DiOC
FBbi:00000055
DiOC6 (3,3'-dihexyloxacarbocyanine iodide)
image
DAPI
FBbi:00000056
4',6-diamidino-2-phenylindole (DAPI)
image
FBbi:00000057
lucifer yellow
image
FBbi:00000058
methylene blue
image
FBbi:00000059
Nile blue A
image
FBbi:00000060
Nile red
image
FBbi:00000061
pyronine
image
FBbi:00000062
rhodamine 123
image
FBbi:00000063
rhodamine B
image
FBbi:00000064
SYTO Blue
image
FBbi:00000065
SYTO Green
image
FBbi:00000066
SYTO Orange
image
FBbi:00000067
SYTO Red
image
FBbi:00000068
YO-PRO-1
image
FBbi:00000069
endogenous substrate, dye conjugate
true
image
LysoTracker
FBbi:00000070
endogenous substrate, acidotropic-fluor conjugate
true
image
FBbi:00000071
endogenous substrate, lectin-fluor conjugate
true
image
FBbi:00000072
endogenous substrate, lectin-gold conjugate
true
image
FBbi:00000073
taxol
image
FBbi:00000074
endogenous substrate, phalloidin-fluor conjugate
true
image
FBbi:00000075
exogenous label
true
image
FBbi:00000076
genetically encoded enzyme
image
lacZ, X-gal
FBbi:00000077
beta-galactosidase
image
GUS, X-gluc
FBbi:00000078
beta-glucuronidase
image
FBbi:00000079
genetically encoded tag
image
BFP
FBbi:00000080
EBFP
image
CFP
FBbi:00000081
ECFP
image
GFP
FBbi:00000082
EGFP
image
RFP
FBbi:00000083
Aequorea victoria red fluorescent protein tag
true
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YFP
FBbi:00000084
EYFP
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DsRed
FBbi:00000085
DsRed
image
FBbi:00000086
c-MYC peptide tag
image
FBbi:00000087
FLAG peptide tag
visualization of the connected regions of a cell by filling with a label
image
FBbi:00000088
intracellular filling
Fully hydrated tissue rapidly frozen to produce vitrified water, and maintained continuously below the glass transition temperature of water (approximately -137 deg C
jm
2010-03-07T02:05:48Z
image
tissue in amorphous ice embedment
FBbi:00000089
tissue in vitreous ice embedment
Fully hydrated tissue rapidly frozen to produce vitrified water, and maintained continuously below the glass transition temperature of water (approximately -137 deg C
PMID:3043536
image
FBbi:00000090
fluor labeled RNA fill
image
FBbi:00000091
5-SFX fluorescein RNA fill
image
FBbi:00000092
X-rhodamine RNA fill
Tissue treated to make cell membranes permeable, typically for the purpose of allowing access by exogenous stains or substrates.
jm
2010-03-07T02:26:37Z
image
FBbi:00000093
permeabilized tissue
image
FBbi:00000094
fluor labeled protein fill
image
FBbi:00000095
fluor conjugated actin fill
image
FBbi:00000096
Alexa Fluor 488 actin fill
true
image
FBbi:00000097
Alexa Fluor 568 actin fill
true
image
FBbi:00000098
fluoresceine actin fill
true
image
FBbi:00000099
rhodamine actin fill
true
image
FBbi:00000100
phalloidin
image
FBbi:00000101
Alexa Fluor 350 phalloidin fill
true
image
FBbi:00000102
Alexa Fluor 488 phalloidin fill
true
image
FBbi:00000103
eosin phalloidin fill
true
image
FBbi:00000104
fluoresceine phalloidin fill
true
image
FBbi:00000105
Oregon Green 488 phalloidin fill
true
image
FBbi:00000106
Oregon Green 514 phalloidin fill
true
image
FBbi:00000107
rhodamine phalloidin fill
true
image
FBbi:00000108
Texas Red-X phalloidin fill
true
image
FBbi:00000109
fluor conjugated tubulin fill
image
FBbi:00000110
Oregon Green 514 tubulin fill
true
image
FBbi:00000111
X-rhodamine tubulin fill
true
image
FBbi:00000112
probe for lipid
image
FBbi:00000113
DiA
image
FBbi:00000114
DiD
image
FBbi:00000115
DiI
image
FBbi:00000116
DiO
image
FBbi:00000117
DiR
image
FBbi:00000118
miscellaneous fill
image
Neurobiotin
FBbi:00000119
biotin ethylenediamine fill
image
FBbi:00000120
cobalt fill
image
FBbi:00000121
silver-intensified cobalt fill
image
FBbi:00000122
metabolically incorporated radioisotope
image
FBbi:00000123
[14]C
image
FBbi:00000124
[32]P
image
FBbi:00000125
[33]P
image
FBbi:00000126
[35]S
image
FBbi:00000127
[3]H
image
FBbi:00000128
label conjugated to probe
tissue made permeable by the action of glycerol
jm
2010-03-07T02:37:12Z
image
glycerinated tissue
FBbi:00000129
glycerol permeabilized
image
FBbi:00000130
labeled primary antibody
image
FBbi:00000131
primary antibody-enzyme conjugate, substrate
true
image
FBbi:00000132
alkaline phosphatase
image
FBbi:00000133
primary antibody-alkaline phosphastase conjugate, DAB
true
image
FBbi:00000134
primary antibody-alkaline phosphastase conjugate, ELF 97 phosphate
true
image
FBbi:00000135
primary antibody-alkaline phosphastase conjugate, Vector Black
true
image
FBbi:00000136
primary antibody-alkaline phosphastase conjugate, Vector Blue
true
image
FBbi:00000137
primary antibody-alkaline phosphastase conjugate, Vector Red
true
image
FBbi:00000138
horseradish peroxidase
image
FBbi:00000139
primary antibody-horseradish peroxidase, 4-chloro-1-naphthol
true
image
FBbi:00000140
primary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole
true
image
FBbi:00000141
primary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine
true
image
FBbi:00000142
primary antibody-horseradish peroxidase, Vector NovaRed
true
image
FBbi:00000143
primary antibody-horseradish peroxidase, Vector SG
true
image
FBbi:00000144
primary antibody-horseradish peroxidase, Vector VIP
true
image
FBbi:00000145
primary antibody-fluor conjugate
true
image
AMCA
FBbi:00000146
primary antibody-aminomethylcoumarin acetate
true
image
FBbi:00000147
primary antibody-Cascade blue
true
image
Cy2
FBbi:00000148
primary antibody-cyanine
true
image
FITC
FBbi:00000149
primary antibody-fluorescein isothiocyanate
true
image
Cy3
FBbi:00000150
primary antibody-indocarbocyanine
true
image
Cy5
FBbi:00000151
primary antibody-indodicarbocyanine
true
image
RRX
FBbi:00000152
primary antibody-rhodamine red-X
true
image
TRITC
FBbi:00000153
primary antibody-tetramethyl rhodamine isothiocyanate
true
image
TR
FBbi:00000154
primary antibody-Texas Red
true
image
FBbi:00000155
primary antibody-gold conjugate
true
image
FBbi:00000156
primary antibody plus labeled secondary antibody
image
FBbi:00000157
secondary antibody-enzyme conjugate, substrate
true
image
FBbi:00000158
acid phosphatase
image
FBbi:00000159
secondary antibody-alkaline phosphastase conjugate, DAB
true
image
FBbi:00000160
secondary antibody-alkaline phosphastase conjugate, ELF 97 phosphate
true
image
FBbi:00000161
secondary antibody-alkaline phosphastase conjugate, Fast Blue B
true
image
FBbi:00000162
secondary antibody-alkaline phosphastase conjugate, Fast Red
true
image
FBbi:00000163
secondary antibody-alkaline phosphastase conjugate, INT
true
image
FBbi:00000164
secondary antibody-alkaline phosphastase conjugate, Magenta Phos
true
image
FBbi:00000165
secondary antibody-alkaline phosphastase conjugate, NABP
true
image
FBbi:00000166
secondary antibody-alkaline phosphastase conjugate, NAGP
true
image
FBbi:00000167
secondary antibody-alkaline phosphastase conjugate, NAMP
true
image
FBbi:00000168
secondary antibody-alkaline phosphastase conjugate, NATP
true
image
FBbi:00000169
secondary antibody-alkaline phosphastase conjugate, NBT
true
image
FBbi:00000170
secondary antibody-alkaline phosphastase conjugate, Vector Black
true
image
FBbi:00000171
secondary antibody-alkaline phosphastase conjugate, Vector Blue
true
image
FBbi:00000172
secondary antibody-alkaline phosphastase conjugate, Vector Red
true
image
FBbi:00000173
secondary antibody-alkaline phosphastase conjugate, BCIP
true
image
FBbi:00000174
secondary antibody-beta-galactosidase, X-Gal
true
image
FBbi:00000175
secondary antibody-beta-glucuronidase, X-gluc
true
image
FBbi:00000176
esterase
image
FBbi:00000177
secondary antibody-esterase, Naphthol-AS-D-chloroacetate
true
image
FBbi:00000178
glucose oxidase
image
FBbi:00000179
secondary antibody-glucose oxidase, TNBT
true
image
FBbi:00000180
secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine
true
image
FBbi:00000181
secondary antibody-horseradish peroxidase, 3,3'-diaminobenzidine silver enhanced
true
image
FBbi:00000182
secondary antibody-horseradish peroxidase, 4-chloro-1-naphthol
true
image
FBbi:00000183
secondary antibody-horseradish peroxidase, 3-amino-9-ethylcarbazole
true
image
FBbi:00000184
secondary antibody-horseradish peroxidase, 3,3',5,5'-tetramethylbenzidine
true
image
FBbi:00000185
secondary antibody-horseradish peroxidase, Vector NovaRed
true
image
FBbi:00000186
secondary antibody-horseradish peroxidase, Vector SG
true
image
FBbi:00000187
secondary antibody-horseradish peroxidase, Vector VIP
true
image
FBbi:00000188
secondary antibody-phosphatase, Naphthol-AS-BI-phosphate
true
image
FBbi:00000189
secondary antibody-fluor conjugate
true
image
FBbi:00000190
secondary antibody-Alexa Fluor conjugate
true
image
AMCA
FBbi:00000191
aminomethylcoumarin
image
FBbi:00000192
Cascade blue
image
Cy2
FBbi:00000193
secondary antibody-cyanine conjugate
true
image
DTAF
FBbi:00000194
secondary antibody-diaminotriazinylaminoflorescein conjugate
true
image
FITC
FBbi:00000195
secondary antibody-fluorescein isothiocyanate conjugate
true
image
Cy3
FBbi:00000196
secondary antibody-indocarbocyanine conjugate
true
image
Cy5
FBbi:00000197
secondary antibody-indodicarbocyanine conjugate
true
image
LSRC
FBbi:00000198
secondary antibody-lissamine rhodamine sulfonyl chloride
true
image
RRX
FBbi:00000199
secondary antibody-rhodamine red-X conjugate
true
image
TRITC
FBbi:00000200
secondary antibody-tetramethyl rhodamine isothiocyanate conjugate
true
image
TR
FBbi:00000201
secondary antibody-Texas red conjugate
true
image
FBbi:00000202
gold
image
FBbi:00000203
labeled nucleic acid probe
true
image
FBbi:00000204
DNA probe
image
FBbi:00000205
biotin labeled DNA probe
true
image
FBbi:00000206
digoxigenin labeled DNA probe
true
image
FBbi:00000207
fluor labeled DNA probe
true
image
FBbi:00000208
BODIPY TR-14-dUTP labeled DNA probe
true
image
FBbi:00000209
bromodeoxyuridine labeled DNA probe
true
image
FBbi:00000210
fluoresceine-12-dUTP labeled DNA probe
true
image
FBbi:00000211
Oregon Green 488-5-dUTP labeled DNA probe
true
image
FBbi:00000212
radioisotope labeled DNA probe
true
image
FBbi:00000213
[32]P labeled DNA probe
true
image
FBbi:00000214
[33]P labeled DNA probe
true
image
FBbi:00000215
RNA probe
image
FBbi:00000216
biotin labeled RNA probe
true
image
FBbi:00000217
digoxigenin labeled RNA probe
true
image
FBbi:00000218
fluoroscein labeled RNA probe
true
image
FBbi:00000219
radioisotope labeled RNA probe
true
image
FBbi:00000220
[32]P labeled RNA probe
true
image
FBbi:00000221
[33]P labeled RNA probe
true
image
FBbi:00000222
imaging method
image
FBbi:00000223
graphic illustration
image
FBbi:00000224
computer graphic
image
FBbi:00000225
black and white graphic
image
FBbi:00000226
color graphic
image
FBbi:00000227
grey scale graphic
image
FBbi:00000228
camera lucida assisted graphic
image
FBbi:00000229
free hand graphic
image
FBbi:00000230
line art graphic
image
FBbi:00000231
charcoal pencil graphic
image
FBbi:00000232
colored pencil graphic
image
FBbi:00000233
graphite pencil graphic
image
black and white graphic
FBbi:00000234
pen and ink graphic
image
FBbi:00000235
painted graphic
image
FBbi:00000236
acrylic painted graphic
image
FBbi:00000237
oil painted graphic
image
FBbi:00000238
pastel painted graphic
image
FBbi:00000239
watercolor painted graphic
methods for imaging objects large enough to be observed by the unaided eye
image
FBbi:00000240
macroscopy
methods for forming images of objects too small to be observed with the unaided eye
image
FBbi:00000241
microscopy
image
FBbi:00000242
wide field light micrograph
true
image
FBbi:00000243
bright-field microscopy
imaging with rejection of the unscattered illumination (removal of the zero order component of the diffracted wave)
image
FBbi:00000244
dark-field microscopy
image
DIC
Nomarski
FBbi:00000245
differential interference contrast microscopy
image
FBbi:00000246
fluorescence microscopy
image
FBbi:00000247
phase contrast microscopy
image
FBbi:00000248
polarization microscopy
image
FBbi:00000249
time lapse microscopy
image
FBbi:00000250
narrow field light micrograph
true
image
FBbi:00000251
confocal microscopy
image
FBbi:00000252
single-spot confocal microscopy
image
FBbi:00000253
spinning disk confocal microscopy
image
FBbi:00000254
two-photon laser scanning microscopy
image
FBbi:00000255
multi-photon microscopy
image
FBbi:00000256
mode of electron microscopy
image is formed by scanning the surface of the specimen with a beam of electrons in a raster pattern
image
FBbi:00000257
scanning electron microscopy (SEM)
image
FBbi:00000258
transmission electron microscopy (TEM)
the scanning probe is maintained at a fixed distance above the surface e of the specimen by van der Waals forces
image
FBbi:00000259
atomic force microscopy
image
FBbi:00000260
X-ray micrograph
image
FBbi:00000261
montage
Membrane permeabilization by the action of ionic or non-ionic detergents
jm
2010-03-07T02:37:21Z
image
FBbi:00000262
detergent permeabilized
permeabilization due to extraction of lipid from membranes by an organic solvent such as acetone or methanol.
jm
2010-03-07T02:37:29Z
image
FBbi:00000263
solvent permeabilized
Saponin, a detergent-like molecule, preferentially forms holes in membranes that contain cholesterol.
jm
2010-03-07T02:43:41Z
image
saponized tissue
FBbi:00000264
saponin permeabilized
methods and devices used for capturing an image of a real object; distinct from images created by artwork
jm
2010-03-09T09:57:38Z
image
micrograph
photograph
FBbi:00000265
recorded image
methods and devices used for creating images by some form of artwork, as distinct from capturing images by means of some recording device
jm
2010-03-09T10:04:40Z
image
artwork
drawing
FBbi:00000266
portrayed image
A form of graphical illustration that changes with time to give a sense of motion or represent dynamic changes in the portrayal.
jm
2010-03-09T10:12:11Z
image
FBbi:00000267
animation
sources and methods for illumination
jm
2010-03-09T10:38:14Z
image
FBbi:00000268
illumination method
media and devices employed for recording the alterations in the illumination that result from its interaction with the sample
jm
2010-03-09T10:38:14Z
image
FBbi:00000269
detection method
The physical property of the specimen that leads to the modifications of the illumination that are recorded in the image.
jm
2010-03-09T10:38:14Z
image
FBbi:00000270
imaged parameter
jm
2010-03-09T10:38:14Z
image
FBbi:00000271
contrast-enhancing method
jm
2010-03-09T10:46:27Z
image
FBbi:00000272
illumination by photons
jm
2010-03-09T10:46:27Z
image
FBbi:00000273
illumination by electrons
jm
2010-03-09T10:46:27Z
image
FBbi:00000274
illumination by acoustic waves
jm
2010-03-09T10:46:27Z
image
FBbi:00000275
illumination by neutrons
jm
2010-03-09T10:46:27Z
image
FBbi:00000276
illumination by ions
illumination that covers the entire field of view of the image-forming lens
jm
2010-03-09T10:50:41Z
image
FBbi:00000277
widefield illumination
illumination restricted to a small portion of the field of view of the imaging lens; often one or more diffraction limited spots
jm
2010-03-09T10:50:41Z
image
FBbi:00000278
narrowfield illumination
jm
2010-03-09T10:50:41Z
image
FBbi:00000279
coherent illumination
jm
2010-03-09T10:50:41Z
image
FBbi:00000280
incoherent illumination
jm
2010-03-09T10:50:41Z
image
FBbi:00000281
nearfield illumination
jm
2010-03-09T10:50:41Z
image
FBbi:00000282
farfield illumination
jm
2010-03-09T10:50:41Z
image
FBbi:00000283
continuous illumination
illumination that varies with time; often achieved with pulsed lasers for the purpose of generating very-high peak illumination power
jm
2010-03-09T10:50:41Z
image
FBbi:00000284
pulsed illumination
jm
2010-03-09T10:50:41Z
image
FBbi:00000285
oblique illumination
illumination by a single spot of light that is scanned across the field of view
jm
2010-03-09T10:51:29Z
image
FBbi:00000286
single point scanning
illumination by multiple points of light simultaneously
jm
2010-03-09T10:51:29Z
image
FBbi:00000287
multiple point scanning
scanning by multiple points of light arising from pinholes in a spinning disk that is illuminated by a widefield source
jm
2010-03-09T10:52:38Z
image
FBbi:00000288
spinning disk scanning
Multiple points of illumination generated by a fixed array of sources.
jm
2010-03-09T10:52:38Z
image
FBbi:00000289
array scanning
illumination parallel or at small angles to the optical axis is attenuated or blocked by a stop
jm
2010-03-09T11:04:14Z
image
FBbi:00000290
hollow-cone illumination
Illumination is distributed asymmetrically around the optic axis, typically achieved by a non-circular stop placed below the lower lens element and aperture of the condenser.
jm
2010-03-09T11:04:14Z
image
FBbi:00000291
anaxial illumination
Illumination is distributed asymmetrically around the optic axis, typically achieved by a non-circular stop placed below the lower lens element and aperture of the condenser.
:
illumination restricted to angles that exceed the acceptance angle of the image-forming lens
jm
2010-03-09T11:04:41Z
image
FBbi:00000292
darkfield illumination
illumination at angles less than the acceptance angle of the image-forming lens is attenuated by a filter to give a colored background of unscattered light; higher angle illumination may be filtered to give a contrasting color
jm
2010-03-09T11:04:41Z
image
FBbi:00000293
Rheinberg illumination
jm
2010-03-09T11:33:49Z
image
FBbi:00000294
charge coupled device (CCD)
jm
2010-03-09T11:33:49Z
image
FBbi:00000295
photomultiplier tube (PMT)
jm
2010-03-09T11:33:49Z
image
FBbi:00000296
photodiode
jm
2010-03-09T11:33:49Z
image
FBbi:00000297
avalanche photodiode (APD)
jm
2010-03-09T11:33:49Z
image
FBbi:00000298
silicon intensified target tube (SIT)
jm
2010-03-09T11:33:49Z
image
FBbi:00000299
intensified SIT (ISIT)
jm
2010-03-09T11:33:49Z
image
FBbi:00000300
intensified CCD (ICCD)
jm
2010-03-09T11:33:49Z
image
FBbi:00000301
electron multiplying CCD (EMCCD)
jm
2010-03-09T11:33:49Z
image
FBbi:00000302
electron bombardment CCD (EBCCD)
jm
2010-03-09T11:33:49Z
image
FBbi:00000303
film
jm
2010-03-09T11:33:49Z
image
FBbi:00000304
complementary metal oxide semiconductor (CMOS)
jm
2010-03-09T11:33:49Z
image
FBbi:00000305
piezo-electric device
jm
2010-03-09T12:45:35Z
image
FBbi:00000306
wide-field detection
jm
2010-03-09T12:45:35Z
image
FBbi:00000307
narrow-field detection
jm
2010-03-09T03:11:47Z
image
FBbi:00000308
absorption of illumination
jm
2010-03-09T03:11:47Z
image
FBbi:00000309
inelastic scattering
jm
2010-03-09T03:11:47Z
image
FBbi:00000310
elastic scattering
jm
2010-03-09T03:11:47Z
image
FBbi:00000311
refractive index
jm
2010-03-09T03:11:47Z
image
FBbi:00000312
optical path length gradient
jm
2010-03-09T03:11:47Z
image
FBbi:00000313
retardance
jm
2010-03-09T03:11:47Z
image
FBbi:00000314
stiffness
jm
2010-03-09T03:11:47Z
image
FBbi:00000315
electron density
jm
2010-03-09T03:11:47Z
image
FBbi:00000316
fluorescence emission
jm
2010-03-09T03:11:47Z
image
FBbi:00000317
sub-nanosecond time-resolved fluorescence emission)
jm
2010-03-09T03:11:47Z
image
FBbi:00000318
fluorescence polarization (polarization angle resolved fluorescence emission)
jm
2010-03-09T03:11:47Z
image
FBbi:00000319
chemical composition
jm
2010-03-09T03:11:47Z
image
FBbi:00000320
elevation
methods for increasing the resolution beyond the classical Abbe diffraction limit
jm
2010-03-09T03:12:34Z
image
FBbi:00000321
resolution-enhancing method
jm
2010-03-09T03:14:53Z
image
FBbi:00000322
optical method
jm
2010-03-09T03:14:53Z
image
FBbi:00000323
computational method
jm
2010-03-09T03:20:14Z
image
FBbi:00000324
in-focus phase contrast
jm
2010-03-09T03:20:14Z
image
FBbi:00000325
defocus phase contrast
a birefringent optical element typically used to split polarized illumination into two sets of parallel but displaced rays
jm
2010-03-09T03:20:14Z
image
FBbi:00000326
Wollaston prism
jm
2010-03-09T03:20:14Z
image
FBbi:00000327
Hoffman modulation
jm
2010-03-09T03:20:14Z
image
FBbi:00000328
single sideband edge enhancement (SSBE)
jm
2010-03-09T03:20:14Z
image
FBbi:00000329
interference reflection contrast (IRM)
jm
2010-03-09T03:20:14Z
image
FBbi:00000330
interference contrast
jm
2010-03-09T03:20:14Z
image
FBbi:00000331
polarization contrast
jm
2010-03-09T03:24:02Z
image
FBbi:00000332
structured illumination microscopy (SIM)
jm
2010-03-09T03:24:02Z
image
FBbi:00000333
point-localization method
jm
2010-03-09T03:24:02Z
image
FBbi:00000334
stimulated emission depletion (STED)
jm
2010-03-09T03:32:12Z
image
FBbi:00000335
PALM (photoactivation localization microscopy)
jm
2010-03-09T03:32:12Z
image
FBbi:00000336
STORM (stochastic optical reconstruction microscopy)
jm
2010-03-09T03:32:12Z
image
FBbi:00000337
FIONA (fluorescence imaging with one nanometer accuracy)
jm
2010-03-09T03:32:12Z
image
FBbi:00000338
DOPI (defocussed orientation and position imaging)
jm
2010-03-09T03:32:12Z
image
FBbi:00000339
PAINT (point accumulation for imaging in nanoscale topography)
structured illumination used at sufficiently high power to cause significant ground-state depletion of the imaged fluorophore, thus allowing for non-linear resolution enhancement
jm
2010-03-09T03:32:29Z
image
FBbi:00000340
saturated structured-illumination microscopy (SSIM)
jm
2010-03-09T03:51:49Z
image
FBbi:00000341
UV/visible/IR illumination
jm
2010-03-09T03:51:49Z
image
FBbi:00000342
X-ray illumination
jm
2010-03-09T04:04:04Z
image
FBbi:00000343
microscopy with lenses
imaging by means of a physical probe that passes over the sample
jm
2010-03-09T04:04:04Z
image
FBbi:00000344
scanning probe microscopy
jm
2010-03-09T04:18:03Z
image
FBbi:00000345
mode of light microscopy
jm
2010-03-09T10:19:35Z
image
FBbi:00000347
scanning tunneling microscopy
jm
2010-03-09T10:19:35Z
image
FBbi:00000348
nearfield scanning optical microscopy (ANSOM)
Aperture-less NSOM.
jm
2010-03-09T10:20:01Z
image
FBbi:00000349
ANSOM
jm
2010-03-09T10:23:41Z
image
FBbi:00000350
polarized light illumination
jm
2010-03-09T10:25:08Z
image
FBbi:00000351
orientation-independent polarization microscopy
jm
2010-03-09T10:27:11Z
image
FBbi:00000352
polarization-sensitive detection
Uses an objective with extra components to manipulate the wave front in the plane of the objective aperture.
jm
2010-03-09T10:41:27Z
image
FBbi:00000353
modified objective lens
a computational method that is linear in the mathematical sense, meaning that image intensity is conserved and the data remain suitable for all quantitative analyses
jm
2010-03-09T11:09:35Z
image
FBbi:00000354
linear method
computational method that are mathematically non-linear; image intensity is not conserved, and the data are in general not suitable for quantitative analyses of pixel values
jm
2010-03-09T11:09:35Z
image
FBbi:00000355
non-linear method
jm
2010-03-09T11:10:59Z
image
FBbi:00000356
Wiener filter
jm
2010-03-09T11:10:59Z
image
FBbi:00000357
3D-deconvolution
jm
2010-03-09T11:11:56Z
image
FBbi:00000358
no-neighbors deblurring
jm
2010-03-09T11:11:56Z
image
FBbi:00000359
nearest-neighbors deblurring
jm
2010-03-09T11:19:41Z
image
FBbi:00000360
constrained iterative deconvolution
jm
2010-03-09T11:19:41Z
image
FBbi:00000361
maximum likelihood deconvolution
jm
2010-03-09T11:19:41Z
image
FBbi:00000362
blind deconvolution
jm
2010-03-09T11:19:42Z
image
FBbi:00000363
exhaustive photon reassignment
illumination in the form of a thin sheet of light directed perpendicular to the optic axis
jm
2010-03-11T10:06:20Z
image
FBbi:00000364
light-sheet illumination
Fluorescence loss in photobleaching; a method of determining whether two populations of fluorophore are in diffusive communication with one another by observing the decrease in brightness of one population when the other population is subjected to continuous photobleaching.
jm
2010-03-11T10:09:33Z
image
FBbi:00000365
FLIP
Fluorescence loss in photobleaching; a method of determining the rate and extent of exchange between a localized population of fluorophore and a non-localized diffusible pool, by observing the rate of recovery of brightness of the localized population after photobleaching.
jm
2010-03-11T10:09:33Z
image
FBbi:00000366
FRAP
Fluorescence loss in photobleaching; a method of determining the rate and extent of exchange between a localized population of fluorophore and a non-localized diffusible pool, by observing the rate of recovery of brightness of the localized population after photobleaching.
XX:-new-dbxref-
Fluorescence (or Forster) resonance energy transfer; a method of estimating the distance between two fluorophores by measuring the extent of non-radiative energy transfer between the two. Experimentally, this involves selective excitation of one while observing emission from the other.
jm
2010-03-11T10:09:33Z
image
FBbi:00000367
FRET
jm
2010-03-11T10:09:33Z
image
FBbi:00000368
FLIM
single (or selective) plane illumination.
jm
2010-03-11T10:09:33Z
image
FBbi:00000369
SPIM
coherent Raman anti-Stokes microscopy
jm
2010-03-11T10:13:20Z
image
FBbi:00000370
CARS
optical coherence tomography; an interferometric method of imaging using back-scattered photons (elastic scattering)
jm
2010-03-11T10:32:19Z
image
FBbi:00000371
OCT
image created using the electrons generated by ionization of a sample due to inelastic scattering of the primary beam of radiation
jm
2010-03-12T08:34:44Z
image
FBbi:00000372
secondary_electron imaging
imaged formed using electrons undergoing elastic scattering at very high angles, with emission of characteristic X-rays
jm
2010-03-12T08:40:37Z
image
FBbi:00000373
back-scattered_electron imaging
jm
2010-03-12T08:54:56Z
image
FBbi:00000374
detection of photons
jm
2010-03-12T08:54:56Z
image
FBbi:00000375
detection of electrons
jm
2010-03-12T08:54:56Z
image
FBbi:00000376
detection of acoustic waves
jm
2010-03-12T08:54:56Z
image
FBbi:00000377
detection of current induced in the specimen
jm
2010-03-12T08:55:29Z
image
FBbi:00000378
UV/visible/IR photons
jm
2010-03-12T08:55:29Z
image
FBbi:00000379
X-ray photons
jm
2010-03-12T09:12:36Z
image
FBbi:00000380
scanning-transmission electron microscopy
jm
2010-03-12T09:16:40Z
image
EFTEM energy filtered TEM
ESI electron spectroscopic imaging
FBbi:00000381
EELS imaging
jm
2010-03-12T09:16:40Z
image
FBbi:00000382
EDAX imaging
Illumination used for the purpose of inducing some observable change in the specimen during the course of an imaging session. This illumination may or may not be the same as the illumination used for imaging. Typically used in conjunction with live-cell imaging
jm
2010-03-12T09:32:53Z
image
FBbi:00000383
specimen_modifying_illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000384
photo-bleaching illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000385
photo-ablation illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000386
photo-switching illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000387
photo-activation illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000388
uncaging illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000389
trapping illumination
jm
2010-03-12T10:06:46Z
image
FBbi:00000390
emission-depletion illumination
illumination in the shape of a thin line that is swept over the field of view
jm
2010-03-12T10:31:26Z
image
FBbi:00000391
slit-scanning illumination
illumination and detection via a thin slit
jm
2010-03-12T10:32:36Z
image
FBbi:00000392
slit-scan confocal
Fixed array of sources focused to an array of spots that is swept over the specimen in raster fashion
jm
2010-03-12T10:35:43Z
image
FBbi:00000393
array-scan confocal
jm
2010-03-12T10:39:24Z
image
FBbi:00000394
spot detector
jm
2010-03-12T10:39:24Z
image
FBbi:00000395
area detector
methods of visualization that differentiate between different regions or surfaces of the specimen based on contiguity
jm
2010-03-14T08:38:50Z
image
FBbi:00000396
visualization of contiguous regions
methods of visualization that differentiate regions of the specimen on the basis of their chemical properties
jm
2010-03-14T08:38:50Z
image
FBbi:00000397
visualization by chemical attribute
visualization by depositing a label on the surface of a specimen uniformly (plating), or from a particular direction so that surface topography becomes visible (shadowing)
jm
2010-03-14T08:44:06Z
image
FBbi:00000398
shadowing and plating
visualization by exclusion of a stain in which the specimen is immersed; compare with "positive staining.
jm
2010-03-14T08:44:06Z
image
FBbi:00000399
negative staining
jm
2010-03-14T09:07:35Z
image
FBbi:00000400
sequence-specific nucleic acid probe
jm
2010-03-14T09:07:35Z
image
FBbi:00000401
antibody
jm
2010-03-14T09:07:35Z
image
FBbi:00000402
lectin
jm
2010-03-14T09:07:35Z
image
FBbi:00000403
small-molecule probe
jm
2010-03-14T10:42:36Z
image
FBbi:00000404
fluorescent dextran fill
jm
2010-03-14T10:54:20Z
image
FBbi:00000405
fluorescent protein tag
jm
2010-03-14T09:25:57Z
image
FBbi:00000406
probes for nucleic acid
jm
2010-03-14T11:10:25Z
image
FBbi:00000407
small genetically encoded tag
jm
2010-03-14T09:25:57Z
image
FBbi:00000408
probe for protein
jm
2010-03-14T09:25:57Z
image
FBbi:00000409
organelle-specific probe
jm
2010-03-14T09:26:11Z
image
FBbi:00000410
macromolecular probe
jm
2010-03-14T09:28:19Z
image
FBbi:00000411
probe for mitochondria
jm
2010-03-14T09:28:19Z
image
FBbi:00000412
probe for endoplasmic reticulum
jm
2010-03-14T09:28:19Z
image
FBbi:00000413
probe for Golgi
jm
2010-03-14T09:28:19Z
image
FBbi:00000414
probe for lysosomes
jm
2010-03-15T11:51:34Z
image
positive staining
FBbi:00000415
stain with broad specificity
jm
2010-03-14T11:12:03Z
image
FBbi:00000416
tetracysteine tag
jm
2010-03-14T09:33:18Z
image
FBbi:00000417
Hoechst 33258
jm
2010-03-14T11:12:03Z
image
FBbi:00000418
genetically encoded biotin tag
jm
2010-03-17T01:55:02Z
image
FBbi:00000419
freeze_fracture/freeze_etch
jm
2010-03-17T01:59:59Z
image
FBbi:00000420
fluorescent protein derived from Aequorea victoria
jm
2010-03-14T09:33:53Z
image
FBbi:00000421
membrane-permeant probe
jm
2010-03-14T09:33:53Z
image
FBbi:00000422
membrane impermeant probe
jm
2010-03-14T09:42:34Z
image
FBbi:00000423
acridine homodimer
jm
2010-03-14T09:42:34Z
image
FBbi:00000424
7-amino-actinomycin D
jm
2010-03-14T09:48:57Z
image
FBbi:00000425
conconavalin A
jm
2010-03-14T09:48:57Z
image
FBbi:00000426
wheat germ agglutinin
jm
2010-03-14T09:48:57Z
image
FBbi:00000427
Phaseolus vulgaris lectin PHA-L)
jm
2010-03-14T09:48:57Z
image
FBbi:00000428
Arachis hypogaea (PNA)
jm
2010-03-14T09:48:57Z
image
FBbi:00000429
Helix pomatia agglutinin
jm
2010-03-14T09:48:57Z
image
FBbi:00000430
soybean agglutinin
jm
2010-03-14T09:48:57Z
image
FBbi:00000431
cholera toxin B
jm
2010-03-14T09:52:30Z
image
FBbi:00000432
peptide-nucleic acid probe
jm
2010-03-17T01:59:59Z
image
FBbi:00000433
fluorescent protein derived from Anthozoa
jm
2010-03-17T01:59:59Z
image
FBbi:00000434
optical highlighter
jm
2010-03-17T02:01:22Z
image
FBbi:00000435
Blue fluorescent protein from Aequorea victoria
jm
2010-03-17T02:01:22Z
image
FBbi:00000436
Cyan fluorescent protein from Aequorea
jm
2010-03-17T02:01:22Z
image
FBbi:00000437
Green fluorescent protein from Aequorea
jm
2010-03-14T10:15:00Z
image
FBbi:00000438
DiIC16
jm
2010-03-17T02:01:22Z
image
FBbi:00000439
Yellow fluorescent protein from Aequorea
jm
2010-03-14T10:22:41Z
image
FBbi:00000440
Alexa Fluor 488
jm
2010-03-14T10:22:41Z
image
FBbi:00000441
Alexa Fluor 546
jm
2010-03-14T10:22:41Z
image
FBbi:00000442
Alexa Fluor 568
jm
2010-03-14T10:22:41Z
image
FBbi:00000443
Alexa Fluor 555
jm
2010-03-14T10:22:41Z
image
FBbi:00000444
Alexa Fluor 594
jm
2010-03-14T10:22:41Z
image
FBbi:00000445
Alexa Fluor 610
jm
2010-03-14T10:22:41Z
image
FBbi:00000446
Alexa Fluor 633
jm
2010-03-14T10:22:41Z
image
FBbi:00000447
Alexa Fluor 647
jm
2010-03-14T10:22:41Z
image
FBbi:00000448
Cy2
jm
2010-03-14T10:22:41Z
image
FBbi:00000449
Cy3
jm
2010-03-14T10:22:41Z
image
FBbi:00000450
Cy5
jm
2010-03-14T10:22:41Z
image
FBbi:00000451
Fluorescein (FITC)
jm
2010-03-14T10:22:41Z
image
FBbi:00000452
Rhodamine
fluorophore with ex/em 589/615
jm
2010-03-14T10:22:41Z
image
FBbi:00000453
TexasRed
fluorophore derivative of rhodamine with ex/em 547/572
jm
2010-03-14T10:22:41Z
image
FBbi:00000454
Tetramethyl rhodamine (TRITC)
jm
2010-03-14T10:25:58Z
image
FBbi:00000455
fluorescent label
jm
2010-03-14T10:25:58Z
image
FBbi:00000456
enzyme label
jm
2010-03-14T10:25:58Z
image
FBbi:00000457
electron dense label
jm
2010-03-14T10:25:58Z
image
FBbi:00000458
biotin
jm
2010-03-14T10:28:34Z
image
FBbi:00000459
affinity for specific proteins
jm
2010-03-14T10:28:34Z
image
FBbi:00000460
non-specific protein affinity
jm
2010-03-17T02:09:45Z
image
FBbi:00000461
AzuriteFP
jm
2010-03-17T02:09:45Z
image
FBbi:00000462
SiriusFP
jm
2010-03-14T10:32:01Z
image
FBbi:00000463
non-immunological protein probe
jm
2010-03-14T10:36:52Z
image
FBbi:00000464
alpha-bungarotoxin
jm
2010-03-14T10:36:52Z
image
FBbi:00000465
botulinum toxin
jm
2010-03-14T10:37:23Z
image
FBbi:00000466
tetrodotoxin
jm
2010-03-14T10:37:23Z
image
FBbi:00000467
batrachatoxin
jm
2010-03-17T02:10:21Z
image
FBbi:00000468
CeruleanFP
jm
2010-03-17T02:10:21Z
image
FBbi:00000469
CyPet
jm
2010-03-17T02:10:21Z
image
FBbi:00000470
SCFP
jm
2010-03-17T02:11:07Z
image
FBbi:00000471
EmeraldFP
jm
2010-03-17T02:11:07Z
image
FBbi:00000472
SuperfolderFP
jm
2010-03-17T02:11:07Z
image
FBbi:00000473
T-SapphireFP
jm
2010-03-17T02:14:30Z
image
FBbi:00000474
CitrineFP
jm
2010-03-17T02:14:30Z
image
FBbi:00000475
SYFP
jm
2010-03-17T02:14:30Z
image
FBbi:00000476
TopazFP
jm
2010-03-17T02:14:30Z
image
FBbi:00000477
VenusFP
jm
2010-03-17T02:14:30Z
image
FBbi:00000478
yPet
jm
2010-03-17T02:16:24Z
image
FBbi:00000479
Blue fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:24Z
image
FBbi:00000480
Cyan fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:24Z
image
FBbi:00000481
Green fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:24Z
image
FBbi:00000482
Orange fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:24Z
image
FBbi:00000483
Red fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:24Z
image
FBbi:00000484
Far-red fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:24Z
image
FBbi:00000485
Yellow fluorescent proteins from Anthozoa
jm
2010-03-17T02:16:38Z
image
FBbi:00000486
mTagBFP
jm
2010-03-17T02:17:42Z
image
FBbi:00000487
AmCyanFP
jm
2010-03-17T02:17:42Z
image
FBbi:00000488
mCyFP
jm
2010-03-17T02:17:42Z
image
FBbi:00000489
mTFP1
jm
2010-03-17T02:17:42Z
image
FBbi:00000490
TagCFP
jm
2010-03-17T02:19:04Z
image
FBbi:00000491
AQ143
jm
2010-03-17T02:19:04Z
image
FBbi:00000492
HcRed-tandemFP
jm
2010-03-17T02:19:04Z
image
FBbi:00000493
KatushkaFP
jm
2010-03-17T02:19:04Z
image
FBbi:00000494
mKateFP
jm
2010-03-17T02:19:04Z
image
FBbi:00000495
mKate2FP
jm
2010-03-17T02:19:04Z
image
FBbi:00000496
mPlumFP
jm
2010-03-17T02:19:04Z
image
FBbi:00000497
tdKatuskaFP
jm
2010-03-17T02:19:04Z
image
FBbi:00000498
tdRFP639
jm
2010-03-17T02:20:00Z
image
FBbi:00000499
AceFP
jm
2010-03-17T02:20:00Z
image
FBbi:00000500
Azami GreenFP
jm
2010-03-17T02:20:00Z
image
FBbi:00000501
CopGFP
jm
2010-03-17T02:20:00Z
image
FBbi:00000502
mWasabiFP
jm
2010-03-17T02:20:00Z
image
FBbi:00000503
TagGFP
jm
2010-03-17T02:20:00Z
image
FBbi:00000504
TagGFP2
jm
2010-03-17T02:20:00Z
image
FBbi:00000505
ZsGreenFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000506
DsRed-ExpressFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000507
DsRed-Express2FP
jm
2010-03-17T02:22:53Z
image
FBbi:00000508
DsRed-MaxFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000509
DsRed-monomerFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000510
DsRed2FP
jm
2010-03-17T02:22:53Z
image
FBbi:00000511
dTomatoFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000512
Kusabira OrangeFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000513
Kusabira OrangeFP2
jm
2010-03-17T02:22:53Z
image
FBbi:00000514
mOrangeFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000515
mOrange2FP
jm
2010-03-17T02:22:53Z
image
FBbi:00000516
TagRFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000517
TagRFP-T
jm
2010-03-17T02:22:53Z
image
FBbi:00000518
tdTomatoFP
jm
2010-03-17T02:22:53Z
image
FBbi:00000519
turboRFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000520
AsRed2FP
jm
2010-03-17T02:24:26Z
image
FBbi:00000521
eqFP611
jm
2010-03-17T02:24:26Z
image
FBbi:00000522
HcRed1FP
jm
2010-03-17T02:24:26Z
image
FBbi:00000523
JRedFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000524
mAppleFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000525
mCherryFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000526
mRasberryFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000527
mRFP1
jm
2010-03-17T02:24:26Z
image
FBbi:00000528
mRubyFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000529
mStrawberryFP
jm
2010-03-17T02:24:26Z
image
FBbi:00000530
tdRFP611
jm
2010-03-17T02:25:15Z
image
FBbi:00000531
PhiYFP
jm
2010-03-17T02:25:15Z
image
FBbi:00000532
TagYFP
jm
2010-03-17T02:25:15Z
image
FBbi:00000533
TurboYFP
jm
2010-03-17T02:25:15Z
image
FBbi:00000534
ZsYellowFP
jm
2010-03-17T02:27:50Z
image
FBbi:00000535
fluorescent protein timer
jm
2010-03-17T02:27:50Z
image
FBbi:00000536
photoactivatable fluorescent protein
jm
2010-03-17T02:27:50Z
image
FBbi:00000537
photoconvertible fluorescent protein
jm
2010-03-17T02:27:50Z
image
FBbi:00000538
photoconvertible/photoswitchable fluorescent protein
jm
2010-03-17T02:27:50Z
image
FBbi:00000539
photoswitchable fluorescent protein
jm
2010-03-17T02:29:47Z
image
FBbi:00000540
DsRed-ES FP
jm
2010-03-17T02:29:47Z
image
FBbi:00000541
Fast-FT
jm
2010-03-17T02:29:47Z
image
FBbi:00000542
Medium-FT
jm
2010-03-17T02:29:47Z
image
FBbi:00000543
Slow-FT
jm
2010-03-17T02:31:26Z
image
FBbi:00000544
PA-GFP
jm
2010-03-17T02:31:26Z
image
FBbi:00000545
PA-CFP
jm
2010-03-17T02:31:26Z
image
FBbi:00000546
PA-mCherry1FP
jm
2010-03-17T02:31:26Z
image
FBbi:00000547
PA-mRFP
jm
2010-03-17T02:31:26Z
image
FBbi:00000548
Phamret
jm
2010-03-17T02:32:35Z
image
FBbi:00000549
Dendra2FP
jm
2010-03-17T02:32:35Z
image
FBbi:00000550
dEOSFP
jm
2010-03-17T02:32:35Z
image
FBbi:00000551
KaedeFP
jm
2010-03-17T02:32:35Z
image
FBbi:00000552
mEOS2FP
jm
2010-03-17T02:32:35Z
image
FBbi:00000553
mKikGR
jm
2010-03-17T02:32:35Z
image
FBbi:00000554
wtEOSFP
jm
2010-03-17T02:32:35Z
image
FBbi:00000555
wtKIikGR
jm
2010-03-17T02:32:44Z
image
FBbi:00000556
IrisFP
jm
2010-03-17T02:34:12Z
image
FBbi:00000557
bsDronpa
jm
2010-03-17T02:34:12Z
image
FBbi:00000558
Dronpa
jm
2010-03-17T02:34:12Z
image
FBbi:00000559
Dronpa-3
jm
2010-03-17T02:34:12Z
image
FBbi:00000560
E2GFP
jm
2010-03-17T02:34:12Z
image
FBbi:00000561
KFP1
jm
2010-03-17T02:34:12Z
image
FBbi:00000562
mTFP0.7
jm
2010-03-17T02:34:12Z
image
FBbi:00000563
PadronFP
jm
2010-03-17T02:34:12Z
image
FBbi:00000564
rsCherryFP
jm
2010-03-17T02:34:12Z
image
FBbi:00000565
rsCherryRevFP
jm
2010-03-17T02:34:12Z
image
FBbi:00000566
rsFastLimeFP
jm
2010-04-27T10:29:56Z
image
FBbi:00000567
optically-dense stain
jm
2010-04-27T10:29:56Z
image
FBbi:00000568
electron-dense stain
jm
2010-04-27T10:38:31Z
image
FBbi:00000569
uranyl salt
jm
2010-04-27T10:38:31Z
image
FBbi:00000570
lead salt
jm
2010-04-27T10:38:31Z
image
FBbi:00000571
osmium tetroxide
jm
2010-04-27T10:38:31Z
image
FBbi:00000572
potassium permanganate
jm
2010-04-27T10:39:43Z
image
FBbi:00000573
uranium compound
jm
2010-04-27T10:39:43Z
image
FBbi:00000574
molybdenum compound
jm
2010-04-27T10:39:43Z
image
FBbi:00000575
tungsten compound
jm
2010-04-27T10:39:43Z
image
FBbi:00000576
aurothioglucose
jm
2010-04-28T06:06:52Z
image
FBbi:00000577
other negative stain
jm
2010-04-28T06:08:02Z
image
FBbi:00000578
other radioisotope
A fragment of a cell, subcellular organelle, or macromolecular complex.
jm
2010-04-28T06:08:42Z
image
FBbi:00000579
isolated subcellular component
electrons generated by inelastic scattering of other radiation, the primary radiation.
jm
2010-05-04T12:25:14Z
image
FBbi:00000580
secondary electron generation
specimen from which water has been removed by a process that avoids liquid-gas and solid-gas phase transitions.
jm
2010-05-04T12:31:12Z
image
FBbi:00000581
critical_point dried specimen
data as acquired, with no alterations that change the pixel values.
jm
2010-05-04T12:42:17Z
image
FBbi:00000582
unprocessed raw data
specimen from which water has been removed by evaporation under vacuum at a temperature below freezing.
jm
2010-05-04T12:49:31Z
image
FBbi:00000583
lyophilized specimen
fluorophore derivative of rhodamine with ex/em 580/605
jm
2010-05-04T09:02:54Z
image
FBbi:00000584
X-Rhodamine
A method of reconstructing 3D structure by combining serial sectioning with scanning EM.
jm
2010-09-02T05:10:33Z
image
FBbi:00000585
serial block face SEM (SBFSEM)
A method of reconstructing 3D structure by combining serial sectioning with scanning EM.
PMID:15514700
jm
2010-09-03T08:42:47Z
image
FBbi:00000586
elastic scattering of electrons
jm
2010-09-03T08:42:47Z
image
FBbi:00000587
elastic scattering of photons
jm
2010-09-03T08:43:42Z
image
FBbi:00000588
inelastic scattering of electrons
jm
2010-09-03T08:43:42Z
image
FBbi:00000589
inelastic scattering of photons (Raman scattering)
The source of the variation in the imaged parameter across the field of view.
jm
2010-09-03T08:53:13Z
image
FBbi:00000590
source of contrast
jm
2010-09-03T09:55:12Z
image
FBbi:00000591
differences in chemical composition
jm
2010-09-03T09:55:12Z
image
FBbi:00000592
distribution of epitope
jm
2010-09-03T09:55:12Z
image
FBbi:00000593
form birefringence
jm
2010-09-03T09:55:12Z
image
FBbi:00000594
intrinsic birefringence
jm
2010-09-03T09:55:12Z
image
FBbi:00000595
stress-induced birefringence
jm
2010-09-03T09:55:12Z
image
FBbi:00000596
distribution of a specific nucleic acid sequence
jm
2010-09-03T09:55:12Z
image
FBbi:00000597
distribution of a specific protein
jm
2010-09-03T09:55:12Z
image
FBbi:00000598
differences in adsorption or binding of stain
jm
2010-09-03T09:55:12Z
image
FBbi:00000599
boundaries between regions with different refractive index
jm
2010-09-03T09:55:12Z
image
FBbi:00000600
differences in amount of elastic light scattering
jm
2010-09-04T11:57:06Z
image
FBbi:00000601
differences in deposition of metal shadow
jm
2010-09-04T12:55:54Z
image
FBbi:00000602
differences in intrinsic optical density
jm
2010-09-04T01:28:20Z
image
FBbi:00000603
fluorescence polarization microscopy
jm
2010-09-04T01:31:54Z
image
FBbi:00000604
compartmentalization of stain or label
jm
2010-09-04T01:35:37Z
image
FBbi:00000605
differences in fluorescence lifetime
jm
2010-09-04T01:36:45Z
image
FBbi:00000606
differences in orientation of fluorophore
jm
2010-09-04T01:51:14Z
image
FBbi:00000607
intrinsic mass distribution
jm
2010-09-04T02:05:02Z
image
FBbi:00000608
X-ray fluorescence
jm
2010-09-04T11:49:25Z
image
FBbi:00000609
heat fixed tissue
jm
2010-09-04T11:56:02Z
image
FBbi:00000610
copper salt
jm
2010-09-28T04:35:54Z
image
FBbi:00000611
dispersed cells in vitro
jm
2011-05-23T09:33:44Z
image
FBbi:00000612
fluorescent protein derived from Arabidopsis
jm
2011-05-23T09:49:58Z
image
FBbi:00000613
vidicon tube camera
jm
2011-05-23T09:55:54Z
image
FBbi:00000614
phototropin 2
jm
2011-05-23T09:57:01Z
image
FBbi:00000615
miniSOG
jm
2011-05-23T10:09:41Z
image
FTIR frustrated total internal reflection
FBbi:00000616
evanescent wave scattering
jm
2011-05-23T10:10:58Z
image
total internal reflection fluorescence TIRF
FBbi:00000617
evanescent wave microscopy
jm
2011-05-23T10:34:07Z
image
FBbi:00000618
ground state depletion scanning (GSD)
jm
2011-05-23T10:43:15Z
image
FBbi:00000619
nearfield illumination
jm
2011-05-23T10:44:03Z
image
FBbi:00000620
nearfield illumination
jm
2011-05-23T10:51:16Z
image
FBbi:00000621
freeze-substituted tissue
jm
2011-05-23T10:53:45Z
image
FBbi:00000622
high-voltage electron microscopy (HVEM)
jm
2011-05-23T10:53:45Z
image
FBbi:00000623
intermediate voltage electron microacopy (IVEM)
image
FBbi_root:00000000
Biological Imaging Method