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@prefix : <http://www.w3.org/2002/07/owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix psi: <http://purl.obolibrary.org/obo/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix bibo: <http://purl.org/ontology/bibo/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix uniprot: <http://www.uniprot.org/core/> .
@base <http://purl.jp/bio/12/glyco/glycan> .
<http://purl.jp/bio/12/glyco/glycan> rdf:type :Ontology ;
:versionInfo "1.0.1"^^xsd:string ;
dc:date "2013-02-10 23:11:00"^^xsd:dateTime ;
dc:creator "Daisuke Shinmachi"^^xsd:string ,
"Hiro Sawaki"^^xsd:string ,
"Issaku Yamada"^^xsd:string ,
"Kiyoko Aoki-Kinoshita"^^xsd:string ,
"Masaaki Matsubara"^^xsd:string ,
"Matthew Campbell"^^xsd:string ,
"Philip Toukach"^^xsd:string ,
"Rene Ranzinger"^^xsd:string ,
"Shin Kawano"^^xsd:string ,
"Shujiro Okuda"^^xsd:string .
#################################################################
#
# Annotation properties
#
#################################################################
### http://purl.jp/bio/12/glyco/glycan#has_strain
<http://purl.jp/bio/12/glyco/glycan#has_strain> rdf:type :AnnotationProperty ;
rdfs:comment "Object is bacterial strain."^^xsd:string ;
rdfs:domain uniprot:Taxon .
### http://xmlns.com/foaf/0.1/name
<http://xmlns.com/foaf/0.1/name> rdf:type :AnnotationProperty .
#################################################################
#
# Object Properties
#
#################################################################
### http://purl.jp/bio/12/glyco/glycan#captured_by
<http://purl.jp/bio/12/glyco/glycan#captured_by> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Object is compounds that have affinity to glycan or glycoconjugate."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_binding> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycan_binder> .
### http://purl.jp/bio/12/glyco/glycan#catalyzed_by
<http://purl.jp/bio/12/glyco/glycan#catalyzed_by> rdf:type :ObjectProperty ;
rdfs:comment "Object is a reaction process."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#reaction> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] .
### http://purl.jp/bio/12/glyco/glycan#contained_in
<http://purl.jp/bio/12/glyco/glycan#contained_in> rdf:type :ObjectProperty ;
rdfs:comment "The subject is a structurally defined motif, and the object is a glycan structure or motif."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycan_motif> ;
:inverseOf <http://purl.jp/bio/12/glyco/glycan#has_motif> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#degraded_by
<http://purl.jp/bio/12/glyco/glycan#degraded_by> rdf:type :ObjectProperty ;
rdfs:comment "Object is a reaction process, which degrades the subject."^^xsd:string ;
rdfs:subPropertyOf <http://purl.jp/bio/12/glyco/glycan#catalyzed_by> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycosyl_hydrolase_reaction> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration
<http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Subject is a monosaccharide basetype. The object values for the predicate can be D, L or unknown."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#absolute_configuration> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#configuration> .
### http://purl.jp/bio/12/glyco/glycan#has_adduct
<http://purl.jp/bio/12/glyco/glycan#has_adduct> rdf:type :ObjectProperty ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#adduct> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_annotation> .
### http://purl.jp/bio/12/glyco/glycan#has_affinity_to
<http://purl.jp/bio/12/glyco/glycan#has_affinity_to> rdf:type :ObjectProperty ;
rdfs:comment "Subject is a glycan or glycoconjugate, which non-covalently binds to the object, usually :glycan_binder."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycan_binder> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_aglycon
<http://purl.jp/bio/12/glyco/glycan#has_aglycon> rdf:type :ObjectProperty ;
rdfs:comment "This property is used to specify the aglycon portion of a glycoconjugate compound."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#aglycon> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> .
### http://purl.jp/bio/12/glyco/glycan#has_alias
<http://purl.jp/bio/12/glyco/glycan#has_alias> rdf:type :ObjectProperty ,
:TransitiveProperty ;
rdfs:comment "reference to aliases for the monosaccharide"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> .
### http://purl.jp/bio/12/glyco/glycan#has_amino_acid_type
<http://purl.jp/bio/12/glyco/glycan#has_amino_acid_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#amino_acid> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycosylated_AA> .
### http://purl.jp/bio/12/glyco/glycan#has_anomer
<http://purl.jp/bio/12/glyco/glycan#has_anomer> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Anomeric state of the basetype."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#anomer> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> .
### http://purl.jp/bio/12/glyco/glycan#has_attached_glycan
<http://purl.jp/bio/12/glyco/glycan#has_attached_glycan> rdf:type :ObjectProperty ;
rdfs:comment "This property is used to specify a glycan portion of a glycoconjugate compound."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_basetype
<http://purl.jp/bio/12/glyco/glycan#has_basetype> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Object is the basetype of the monosaccharide (subject)."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_category
<http://purl.jp/bio/12/glyco/glycan#has_category> rdf:type :ObjectProperty ;
rdfs:comment "category of a glycan database"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycan_database> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycan_database_category> .
### http://purl.jp/bio/12/glyco/glycan#has_component
<http://purl.jp/bio/12/glyco/glycan#has_component> rdf:type :ObjectProperty ;
rdfs:comment "Object is a component, representing the monosaccharide composition of the subject."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#component> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_compound
<http://purl.jp/bio/12/glyco/glycan#has_compound> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "The molecule referenced by this subject."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#compound> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#referenced_compound> .
### http://purl.jp/bio/12/glyco/glycan#has_configuration
<http://purl.jp/bio/12/glyco/glycan#has_configuration> rdf:type :ObjectProperty ;
rdfs:label "configuration"^^xsd:string ;
rdfs:comment "Instance of class is configuration." ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#configuration> .
### http://purl.jp/bio/12/glyco/glycan#has_core_modification
<http://purl.jp/bio/12/glyco/glycan#has_core_modification> rdf:type :ObjectProperty ;
rdfs:comment "reference to another RDF describing a core modification that is present in this basetype"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#core_modification> .
### http://purl.jp/bio/12/glyco/glycan#has_core_modification_type
<http://purl.jp/bio/12/glyco/glycan#has_core_modification_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:label "has_core_modification_type"^^xsd:string ;
rdfs:comment "Type of the core modification. Instances of class are core modification types."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#core_modification> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#core_modification_type> .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type
<http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type> rdf:type :ObjectProperty ;
rdfs:comment "Instances of this class are linkage type ." ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#linkage_type> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_type> .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type2
<http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type2> rdf:type :ObjectProperty ;
rdfs:comment "Instances of this class are second linkage type." ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#linkage_type> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_type> .
### http://purl.jp/bio/12/glyco/glycan#has_destination_organism
<http://purl.jp/bio/12/glyco/glycan#has_destination_organism> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "glycan of which organism authors wanted to synthesize or model"^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#source_modeled>
<http://purl.jp/bio/12/glyco/glycan#source_synthetic>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_enzyme
<http://purl.jp/bio/12/glyco/glycan#has_enzyme> rdf:type :ObjectProperty ;
rdfs:comment "Object is an enzyme, which performs the reaction."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#enzyme> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram>
<http://purl.jp/bio/12/glyco/glycan#reaction>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_epitope
<http://purl.jp/bio/12/glyco/glycan#has_epitope> rdf:type :ObjectProperty ;
rdfs:comment "The object is a structural motif with biological relevance; subproperty of has_motif."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycan_epitope> ;
rdfs:subPropertyOf <http://purl.jp/bio/12/glyco/glycan#has_motif> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_evidence
<http://purl.jp/bio/12/glyco/glycan#has_evidence> rdf:type :ObjectProperty ;
rdfs:comment "evidence for a given set of information (glycan, publication). An evidence can be any type of experimental data."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#referenced_compound> .
### http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_chromatogram
<http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_chromatogram> rdf:type :ObjectProperty ;
rdfs:comment "Relation to exoglycosidase treated sample"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_chromatogram> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram> .
### http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_treatment
<http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_treatment> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#reaction> .
### http://purl.jp/bio/12/glyco/glycan#has_external_substituent
<http://purl.jp/bio/12/glyco/glycan#has_external_substituent> rdf:type :ObjectProperty ;
rdfs:comment "Reference to a :substituent."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#substituent> .
### http://purl.jp/bio/12/glyco/glycan#has_first_configuration
<http://purl.jp/bio/12/glyco/glycan#has_first_configuration> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Reference to another RDF resource with URI describing the first monosaccharide configuration"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#configuration> .
### http://purl.jp/bio/12/glyco/glycan#has_fragment_type
<http://purl.jp/bio/12/glyco/glycan#has_fragment_type> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_annotation> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#ms_fragment_type> .
### http://purl.jp/bio/12/glyco/glycan#has_fragmented_spectrum
<http://purl.jp/bio/12/glyco/glycan#has_fragmented_spectrum> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#mass_spectrum> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#msn_spectrum> .
### http://purl.jp/bio/12/glyco/glycan#has_glycoconjugate_sequence
<http://purl.jp/bio/12/glyco/glycan#has_glycoconjugate_sequence> rdf:type :ObjectProperty ;
rdfs:comment "Sequence information to object of rdf:type :glycoconjugate_sequence if the subject is part of a glycoconjugate."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycoconjugate_sequence> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#motif> ,
<http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_glycosequence
<http://purl.jp/bio/12/glyco/glycan#has_glycosequence> rdf:type :ObjectProperty ;
rdfs:comment "glycan sequence information to object of rdf:type :glycosequence representing the subject in a text format."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycosequence> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#motif> ,
<http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_glycosylated_AA
<http://purl.jp/bio/12/glyco/glycan#has_glycosylated_AA> rdf:type :ObjectProperty ;
rdfs:comment "This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide. "^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycosylated_AA> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycopeptide>
<http://purl.jp/bio/12/glyco/glycan#glycoprotein>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_image
<http://purl.jp/bio/12/glyco/glycan#has_image> rdf:type :ObjectProperty ;
rdfs:comment "Object is a URI to an image instance describing a graphical representation of the glycan."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#image> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_ion
<http://purl.jp/bio/12/glyco/glycan#has_ion> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#adduct> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#adduct_ion> .
### http://purl.jp/bio/12/glyco/glycan#has_ionisation_type
<http://purl.jp/bio/12/glyco/glycan#has_ionisation_type> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device> ;
rdfs:range psi:MS_1000008 .
### http://purl.jp/bio/12/glyco/glycan#has_lc_annotation
<http://purl.jp/bio/12/glyco/glycan#has_lc_annotation> rdf:type :ObjectProperty ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#compound> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_peak> .
### http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram
<http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram> rdf:type :ObjectProperty ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#lc_chromatogram> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_lc>
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram_peak
<http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram_peak> rdf:type :ObjectProperty ;
rdfs:comment "Peak description"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_chromatogram> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#lc_peak> .
### http://purl.jp/bio/12/glyco/glycan#has_linkage_type
<http://purl.jp/bio/12/glyco/glycan#has_linkage_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "GlycoCT linkage type of the monosaccharide to the substituent"^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#linkage_type> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_linkage> .
### http://purl.jp/bio/12/glyco/glycan#has_mass_analyzer
<http://purl.jp/bio/12/glyco/glycan#has_mass_analyzer> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device> ;
rdfs:range psi:MS_1000443 .
### http://purl.jp/bio/12/glyco/glycan#has_mass_spectrometry_peak
<http://purl.jp/bio/12/glyco/glycan#has_mass_spectrometry_peak> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#mass_spectrum> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#ms_peak> .
### http://purl.jp/bio/12/glyco/glycan#has_mass_spectrum
<http://purl.jp/bio/12/glyco/glycan#has_mass_spectrum> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_ms> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#mass_spectrum> .
### http://purl.jp/bio/12/glyco/glycan#has_monosaccharide
<http://purl.jp/bio/12/glyco/glycan#has_monosaccharide> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "URI to a RDF resource describing the monosaccharide (usually MonosaccharideDB)." ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#component> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#monosaccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_monosaccharide_notation_scheme
<http://purl.jp/bio/12/glyco/glycan#has_monosaccharide_notation_scheme> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "One of GLYCOSCIENCES, GLYCOCT, IUPAC, CARBBANK, CFG, BCSDB, PDB, or GLYCAM, see http://www.monosaccharidedb.org/notation.action?topic=schemes"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme> .
### http://purl.jp/bio/12/glyco/glycan#has_motif
<http://purl.jp/bio/12/glyco/glycan#has_motif> rdf:type :ObjectProperty ;
rdfs:comment "The object is a structurally defined motif E.g. for Neo-lacto motif http://jcggdb.jp/idb/motif?id=JCGG-MOTIF3009.rdf inverse of ”contained_in”. should have sequence, composition, image ..."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycan_motif> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#saccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_ms_annotation
<http://purl.jp/bio/12/glyco/glycan#has_ms_annotation> rdf:type :ObjectProperty ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#ms_annotation> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_peak> .
### http://purl.jp/bio/12/glyco/glycan#has_ms_model
<http://purl.jp/bio/12/glyco/glycan#has_ms_model> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device> ;
rdfs:range psi:MS_1000031 .
### http://purl.jp/bio/12/glyco/glycan#has_neutral_loss
<http://purl.jp/bio/12/glyco/glycan#has_neutral_loss> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_annotation> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#neutral_loss> .
### http://purl.jp/bio/12/glyco/glycan#has_peptide
<http://purl.jp/bio/12/glyco/glycan#has_peptide> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_IGOT> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycopeptide> .
### http://purl.jp/bio/12/glyco/glycan#has_polymerization_degree
<http://purl.jp/bio/12/glyco/glycan#has_polymerization_degree> rdf:type :ObjectProperty ;
rdfs:comment "Used only if the specified glycan structure (subject) itself is the oligomeric part forming a repeating unit. Repeating unit information to object of rdf:type :repeat_count."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#polymerization_degree> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#polysaccharide> .
### http://purl.jp/bio/12/glyco/glycan#has_precursor_peak
<http://purl.jp/bio/12/glyco/glycan#has_precursor_peak> rdf:type :ObjectProperty ;
rdfs:comment "URI of the precursor peak of a MS^n spectra."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_ms> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#ms_peak> .
### http://purl.jp/bio/12/glyco/glycan#has_product
<http://purl.jp/bio/12/glyco/glycan#has_product> rdf:type :ObjectProperty ;
rdfs:comment "Object is generated by the reaction."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#reaction> ;
rdfs:range [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_reference
<http://purl.jp/bio/12/glyco/glycan#has_reference> rdf:type :ObjectProperty ;
rdfs:comment "Reference between :compound, :citation, :evidence, :source and :referenced_compound."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#referenced_compound> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#citation>
<http://purl.jp/bio/12/glyco/glycan#compound>
<http://purl.jp/bio/12/glyco/glycan#evidence>
<http://purl.jp/bio/12/glyco/glycan#source>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_relative_configuration
<http://purl.jp/bio/12/glyco/glycan#has_relative_configuration> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "IUPAC monosaccharide basetype information. Without absolute configuration D or L"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#configuration> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#relative_configuration> .
### http://purl.jp/bio/12/glyco/glycan#has_repeat_attribute
<http://purl.jp/bio/12/glyco/glycan#has_repeat_attribute> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "(min, max, exact, average, unknown) part of repeating unit"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#polymerization_degree> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#repeat_attribute> .
### http://purl.jp/bio/12/glyco/glycan#has_residue
<http://purl.jp/bio/12/glyco/glycan#has_residue> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Monosaccharide annotation of the subspectrum."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#subspectrum> .
### http://purl.jp/bio/12/glyco/glycan#has_resource_entry
<http://purl.jp/bio/12/glyco/glycan#has_resource_entry> rdf:type :ObjectProperty ;
rdfs:comment "Assigns a resource entry to a compound."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#resource_entry> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#compound>
<http://purl.jp/bio/12/glyco/glycan#referenced_compound>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_ring_type
<http://purl.jp/bio/12/glyco/glycan#has_ring_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Assigns the ring type to a basetype."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#ring_type> .
### http://purl.jp/bio/12/glyco/glycan#has_sample_type
<http://purl.jp/bio/12/glyco/glycan#has_sample_type> rdf:type :ObjectProperty ;
rdfs:comment "Sample type of the source."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#source_sample> .
### http://purl.jp/bio/12/glyco/glycan#has_second_configuration
<http://purl.jp/bio/12/glyco/glycan#has_second_configuration> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Reference to another RDF resource with URI describing the second monosaccharide configuration in case there are more than four stereocenters"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#configuration> .
### http://purl.jp/bio/12/glyco/glycan#has_signal
<http://purl.jp/bio/12/glyco/glycan#has_signal> rdf:type :ObjectProperty ;
rdfs:comment "Resource to a :signal"^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#subspectrum> .
### http://purl.jp/bio/12/glyco/glycan#has_subspectrum
<http://purl.jp/bio/12/glyco/glycan#has_subspectrum> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#subspectrum> .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage
<http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage> rdf:type :ObjectProperty ;
rdfs:comment "linkage of the substituent"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#substituent_linkage> .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_type
<http://purl.jp/bio/12/glyco/glycan#has_substituent_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "linkage type of the substituent"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#substituent_type> .
### http://purl.jp/bio/12/glyco/glycan#has_substitution
<http://purl.jp/bio/12/glyco/glycan#has_substitution> rdf:type :ObjectProperty ;
rdfs:comment "The substituent is linked to the basetype in this monosaccharide."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#substituent> .
### http://purl.jp/bio/12/glyco/glycan#has_substrate
<http://purl.jp/bio/12/glyco/glycan#has_substrate> rdf:type :ObjectProperty ;
rdfs:comment "Object is consumed by the reaction."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#reaction> ;
rdfs:range [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_symbol_format
<http://purl.jp/bio/12/glyco/glycan#has_symbol_format> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "URL to explanation of symbol? The display style of the glycan. (cfg, uoxf, atoms)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#image> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#symbol_format> .
### http://purl.jp/bio/12/glyco/glycan#has_synthesis_type
<http://purl.jp/bio/12/glyco/glycan#has_synthesis_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Allows to specify the synthesis type used to generated the glycan."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_synthetic> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#synthetic_type> .
### http://purl.jp/bio/12/glyco/glycan#has_taxon
<http://purl.jp/bio/12/glyco/glycan#has_taxon> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Species information of the source."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range uniprot:Taxon .
### http://purl.jp/bio/12/glyco/glycan#has_third_configuration
<http://purl.jp/bio/12/glyco/glycan#has_third_configuration> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Reference to another RDF resource with URI describing the third monosaccharide configuration in case there are more than eight stereocenters"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#configuration> .
### http://purl.jp/bio/12/glyco/glycan#has_unassigned_signal
<http://purl.jp/bio/12/glyco/glycan#has_unassigned_signal> rdf:type :ObjectProperty ;
rdfs:comment "Link to an unassigned signal which is just a chemical shift."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#signal> .
### http://purl.jp/bio/12/glyco/glycan#has_uniprot_accession
<http://purl.jp/bio/12/glyco/glycan#has_uniprot_accession> rdf:type :FunctionalProperty ,
:InverseFunctionalProperty ,
:ObjectProperty ;
rdfs:comment "When the subject of this predicate is :glycoprotein, the range instance is equivalent to proteineous part of the subject glycoprotein."^^xsd:string ;
rdfs:range uniprot:Protein ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycopeptide>
<http://purl.jp/bio/12/glyco/glycan#glycoprotein>
<http://purl.jp/bio/12/glyco/glycan#protein>
)
] .
### http://purl.jp/bio/12/glyco/glycan#hosted_by
<http://purl.jp/bio/12/glyco/glycan#hosted_by> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Reference to another biological source representing the host organism."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> .
### http://purl.jp/bio/12/glyco/glycan#hybrid_with
<http://purl.jp/bio/12/glyco/glycan#hybrid_with> rdf:type :ObjectProperty ,
:SymmetricProperty ;
rdfs:comment "An offspring of two different taxons."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> .
### http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format
<http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "carbohydrate sequence format of the sequence given in the glycosequence instance"^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#sequence> .
### http://purl.jp/bio/12/glyco/glycan#in_glycan_database
<http://purl.jp/bio/12/glyco/glycan#in_glycan_database> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Glycan is present in the glycan database specified by the URI."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycan_database> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#resource_entry> .
### http://purl.jp/bio/12/glyco/glycan#is_from_source
<http://purl.jp/bio/12/glyco/glycan#is_from_source> rdf:type :ObjectProperty ;
rdfs:comment "Source annotation for a referenced compound."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#referenced_compound> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#source> .
### http://purl.jp/bio/12/glyco/glycan#modification_type
<http://purl.jp/bio/12/glyco/glycan#modification_type> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Modification type is represented due to biological process, typically N-linked or O-linked."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycosylated_AA> ;
rdfs:range uniprot:Glycosylation_Annotation .
### http://purl.jp/bio/12/glyco/glycan#published_in
<http://purl.jp/bio/12/glyco/glycan#published_in> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "Reference information for the subject."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence>
<http://purl.jp/bio/12/glyco/glycan#referenced_compound>
)
] .
### http://purl.jp/bio/12/glyco/glycan#synthesized_by
<http://purl.jp/bio/12/glyco/glycan#synthesized_by> rdf:type :ObjectProperty ;
rdfs:comment "Object is a reaction process, which synthesizes the subject."^^xsd:string ;
rdfs:subPropertyOf <http://purl.jp/bio/12/glyco/glycan#catalyzed_by> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#glycosyltransferase_reaction> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] .
### http://purl.jp/bio/12/glyco/glycan#used_buffer
<http://purl.jp/bio/12/glyco/glycan#used_buffer> rdf:type :ObjectProperty ;
rdfs:comment "Link to buffer information, such as http://en.wikipedia.org/wiki/Phosphate_buffered_saline."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#buffer> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_nmr>
<http://purl.jp/bio/12/glyco/glycan#reaction>
)
] .
### http://purl.jp/bio/12/glyco/glycan#used_column
<http://purl.jp/bio/12/glyco/glycan#used_column> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#lc_column> .
### http://purl.jp/bio/12/glyco/glycan#used_lc_gradient
<http://purl.jp/bio/12/glyco/glycan#used_lc_gradient> rdf:type :ObjectProperty ;
rdfs:comment "Solvent gradient explained by change in composition with respect to time."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#gradient> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_lc>
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms>
)
] .
### http://purl.jp/bio/12/glyco/glycan#used_molecule
<http://purl.jp/bio/12/glyco/glycan#used_molecule> rdf:type :ObjectProperty ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#compound> ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_lc>
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms>
)
] .
### http://purl.jp/bio/12/glyco/glycan#used_ms
<http://purl.jp/bio/12/glyco/glycan#used_ms> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_ms> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device> .
### http://purl.jp/bio/12/glyco/glycan#used_reference_standard
<http://purl.jp/bio/12/glyco/glycan#used_reference_standard> rdf:type :ObjectProperty ;
rdfs:comment "reference_standard is the accepted internal/external standard for calibrating chemical shift for NMR spectroscopy."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#compound> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> .
### http://purl.jp/bio/12/glyco/glycan#used_software
<http://purl.jp/bio/12/glyco/glycan#used_software> rdf:type :ObjectProperty ;
rdfs:comment "Software used to model the molecule."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#software> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_modeled> .
### http://purl.jp/bio/12/glyco/glycan#used_solvent
<http://purl.jp/bio/12/glyco/glycan#used_solvent> rdf:type :FunctionalProperty ,
:ObjectProperty ;
rdfs:comment "The predicate links the solvent part with the actually solvent (such as https://www.ebi.ac.uk/chebi/searchId.do?chebiId=41981). Object is an instance of glycan:solvent."^^xsd:string ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#solvent> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#solvent_part> .
### http://purl.jp/bio/12/glyco/glycan#used_solvent_part
<http://purl.jp/bio/12/glyco/glycan#used_solvent_part> rdf:type :ObjectProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range <http://purl.jp/bio/12/glyco/glycan#solvent_part> .
#################################################################
#
# Data properties
#
#################################################################
### http://purl.jp/bio/12/glyco/glycan#elucidated
<http://purl.jp/bio/12/glyco/glycan#elucidated> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "if this glycan was elucidated (rather than just studied) in this publication"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#referenced_compound> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#has_AA_sequence
<http://purl.jp/bio/12/glyco/glycan#has_AA_sequence> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Amino acid sequence is represented in the standard IUPAC-IUB amino acid code. Even if any modification are known, any modified amino acid residues are represented with a single letter of a nascent residue."^^xsd:string ;
rdfs:range xsd:string ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#glycopeptide>
<http://purl.jp/bio/12/glyco/glycan#glycoprotein>
<http://purl.jp/bio/12/glyco/glycan#peptide>
<http://purl.jp/bio/12/glyco/glycan#protein>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_abbreviation
<http://purl.jp/bio/12/glyco/glycan#has_abbreviation> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Abbreviation of the database"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycan_database> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_affinity_value
<http://purl.jp/bio/12/glyco/glycan#has_affinity_value> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Binding affinity value for the lectin or antibody."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_binding> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_alias_name
<http://purl.jp/bio/12/glyco/glycan#has_alias_name> rdf:type :DatatypeProperty ;
rdfs:comment "Alias name of a monosaccharide."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_average_molecular_weight
<http://purl.jp/bio/12/glyco/glycan#has_average_molecular_weight> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "literal numeric with decimal, calculated from monosaccharide composition with average atomic weight"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_basetype_id
<http://purl.jp/bio/12/glyco/glycan#has_basetype_id> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Id of the basetype in MonosaccharideDB."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_basetype_linkage_position
<http://purl.jp/bio/12/glyco/glycan#has_basetype_linkage_position> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Linkage position at the basetype."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_linkage> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_cardinality
<http://purl.jp/bio/12/glyco/glycan#has_cardinality> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Number of occurrences of an element (e.g. a monosaccharide) in the subject. This information can be missing in case the cardinality cannot be defined (e.g. repeat units with unknown or under-defined repeats). Missing for non-stoichiometrical residues."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#component> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_cardinality_per_repeat
<http://purl.jp/bio/12/glyco/glycan#has_cardinality_per_repeat> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Number of occurrences of an element (e.g. a monosaccharide) in the repeat unit. Applicable to :repeatUnits only. Missing for non-stoichiometrical residues."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#component> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_cell_line
<http://purl.jp/bio/12/glyco/glycan#has_cell_line> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Cell line information of the source"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_cell_type
<http://purl.jp/bio/12/glyco/glycan#has_cell_type> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Cell type information of the source"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_charge
<http://purl.jp/bio/12/glyco/glycan#has_charge> rdf:type :DatatypeProperty ;
rdfs:comment "Charge state of the MS peak"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_peak> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_formula
<http://purl.jp/bio/12/glyco/glycan#has_chemical_formula> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#neutral_loss> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_shift
<http://purl.jp/bio/12/glyco/glycan#has_chemical_shift> rdf:type :DatatypeProperty ;
rdfs:comment "chemical shift (may be multiple e.g. for CH2 groups in 1H spectra. May be missing if unknown)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_max
<http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_max> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Maximum value of chemical shift."^^xsd:string ;
rdfs:subPropertyOf <http://purl.jp/bio/12/glyco/glycan#has_chemical_shift> ;
:propertyDisjointWith <http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_min> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_min
<http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_min> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Minimum value of chemical shift."^^xsd:string ;
rdfs:subPropertyOf <http://purl.jp/bio/12/glyco/glycan#has_chemical_shift> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_count
<http://purl.jp/bio/12/glyco/glycan#has_count> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:range xsd:integer ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#adduct>
<http://purl.jp/bio/12/glyco/glycan#neutral_loss>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_coupling_constant
<http://purl.jp/bio/12/glyco/glycan#has_coupling_constant> rdf:type :DatatypeProperty ;
rdfs:comment "values in Hz"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder
<http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder> rdf:type :DatatypeProperty ;
rdfs:comment "Object is bond order that is number of linkage in default."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_type> ;
rdfs:range xsd:float .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder2
<http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder2> rdf:type :DatatypeProperty ;
rdfs:comment "Object is second bond order that is number of linkage in default."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_type> ;
rdfs:range xsd:float .
### http://purl.jp/bio/12/glyco/glycan#has_default_linking_position
<http://purl.jp/bio/12/glyco/glycan#has_default_linking_position> rdf:type :DatatypeProperty ;
rdfs:comment "A position that is number of linkage in default."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_type> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_default_linking_position2
<http://purl.jp/bio/12/glyco/glycan#has_default_linking_position2> rdf:type :DatatypeProperty ;
rdfs:comment "A position that is number of second linkage in default."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_type> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_diameter
<http://purl.jp/bio/12/glyco/glycan#has_diameter> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "diameter of the column in micro meter"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_column> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_disease
<http://purl.jp/bio/12/glyco/glycan#has_disease> rdf:type :DatatypeProperty ;
rdfs:comment "MESH reference for disease"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_extended_stereocode
<http://purl.jp/bio/12/glyco/glycan#has_extended_stereocode> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Extended stereocode of the basetype"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_fluid
<http://purl.jp/bio/12/glyco/glycan#has_fluid> rdf:type :DatatypeProperty ;
rdfs:comment "either tissue or fluid"^^xsd:string ;
:propertyDisjointWith <http://purl.jp/bio/12/glyco/glycan#has_tissue> ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_fragment
<http://purl.jp/bio/12/glyco/glycan#has_fragment> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment " sequence as peak annotation"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_annotation> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_intensity
<http://purl.jp/bio/12/glyco/glycan#has_intensity> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "intensity value of the MS peak"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_peak> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_keyword
<http://purl.jp/bio/12/glyco/glycan#has_keyword> rdf:type :DatatypeProperty ;
rdfs:comment "Keyword for the publication. Object is a URI in MeSH."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_length
<http://purl.jp/bio/12/glyco/glycan#has_length> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Length of the column in milli meter"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_column> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_life_stage
<http://purl.jp/bio/12/glyco/glycan#has_life_stage> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Life stage information of the source."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_linkage_path
<http://purl.jp/bio/12/glyco/glycan#has_linkage_path> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "path from the reducing end or from the rightmost residue in repeat"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#subspectrum> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_linkage_position
<http://purl.jp/bio/12/glyco/glycan#has_linkage_position> rdf:type :DatatypeProperty ;
rdfs:comment "Monosaccharide can be linked to other residues via standard glycosidic linkage at the given backbone position."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_manufacturer
<http://purl.jp/bio/12/glyco/glycan#has_manufacturer> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Manufacturer of the device used in the experiment."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_material
<http://purl.jp/bio/12/glyco/glycan#has_material> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Column packing material "^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_column> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_method
<http://purl.jp/bio/12/glyco/glycan#has_method> rdf:type :DatatypeProperty ;
rdfs:comment "experimental procedures described in the article"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_missing_signals_max
<http://purl.jp/bio/12/glyco/glycan#has_missing_signals_max> rdf:type :DatatypeProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_missing_signals_min
<http://purl.jp/bio/12/glyco/glycan#has_missing_signals_min> rdf:type :DatatypeProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_model
<http://purl.jp/bio/12/glyco/glycan#has_model> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Model of the device used in the experiment."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_modification_position
<http://purl.jp/bio/12/glyco/glycan#has_modification_position> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Position of the modification at the monosaccharide."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#core_modification> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_modification_position2
<http://purl.jp/bio/12/glyco/glycan#has_modification_position2> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Second position of the modification at the monosaccharide (eg. for double bounds)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#core_modification> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_monoisotopic_molecular_weight
<http://purl.jp/bio/12/glyco/glycan#has_monoisotopic_molecular_weight> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Literal numeric with decimal, calculated from monosaccharide composition with atomic weight of monoisotope."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_ms_level
<http://purl.jp/bio/12/glyco/glycan#has_ms_level> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#mass_spectrum> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_msdb_id
<http://purl.jp/bio/12/glyco/glycan#has_msdb_id> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Id of the monosaccharide in MonosaccharideDB."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_multiplicity
<http://purl.jp/bio/12/glyco/glycan#has_multiplicity> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "single-character literal (S,M,D,T ,Q) or combination"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_mz
<http://purl.jp/bio/12/glyco/glycan#has_mz> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "MZ value of the MS peak"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#ms_peak> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_nucleus
<http://purl.jp/bio/12/glyco/glycan#has_nucleus> rdf:type :DatatypeProperty ;
rdfs:comment "Nucleus"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_organ
<http://purl.jp/bio/12/glyco/glycan#has_organ> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Organ of the source."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_particle_size
<http://purl.jp/bio/12/glyco/glycan#has_particle_size> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Size of the particle in micro meter."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_column> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_peak_area
<http://purl.jp/bio/12/glyco/glycan#has_peak_area> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Integrated peak area."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#lc_peak> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#has_pmid
<http://purl.jp/bio/12/glyco/glycan#has_pmid> rdf:type :DatatypeProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_repeat_count
<http://purl.jp/bio/12/glyco/glycan#has_repeat_count> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "value of repeat_attribute in resource, if known"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#polymerization_degree> ;
rdfs:range xsd:positiveInteger .
### http://purl.jp/bio/12/glyco/glycan#has_retention_time
<http://purl.jp/bio/12/glyco/glycan#has_retention_time> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Retention time of the molecule in the experiment in minutes."^^xsd:string ;
rdfs:range xsd:double ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#lc_peak>
<http://purl.jp/bio/12/glyco/glycan#msn_spectrum>
)
] .
### http://purl.jp/bio/12/glyco/glycan#has_ring_end
<http://purl.jp/bio/12/glyco/glycan#has_ring_end> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "position of last carbon involved in ring closure"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_ring_start
<http://purl.jp/bio/12/glyco/glycan#has_ring_start> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "position of first carbon involved in ring closure"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_sequence
<http://purl.jp/bio/12/glyco/glycan#has_sequence> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Sequence of the Glycan"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#sequence> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_size
<http://purl.jp/bio/12/glyco/glycan#has_size> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "number of backbone carbon atoms"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_stereocode
<http://purl.jp/bio/12/glyco/glycan#has_stereocode> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Stereocode describing the backbone stereochemistry"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#basetype> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_strain
<http://purl.jp/bio/12/glyco/glycan#has_strain> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Object is bacterial strain."^^xsd:string ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_structure_location
<http://purl.jp/bio/12/glyco/glycan#has_structure_location> rdf:type :DatatypeProperty ;
rdfs:comment "The location of the referenced compound in a publication (e.g. Figure 1)."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#referenced_compound> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position
<http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Linkage position at the substituent."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_linkage> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position2
<http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position2> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Second linkage position at the substituent."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent_linkage> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_substitution_name
<http://purl.jp/bio/12/glyco/glycan#has_substitution_name> rdf:type :DatatypeProperty ;
rdfs:comment "Name of substitution."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_taxon
<http://purl.jp/bio/12/glyco/glycan#has_taxon> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Species information of the source."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_tissue
<http://purl.jp/bio/12/glyco/glycan#has_tissue> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "either tissue or fluid"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#source_natural> ;
rdfs:range xsd:anyURI .
### http://purl.jp/bio/12/glyco/glycan#has_url_template
<http://purl.jp/bio/12/glyco/glycan#has_url_template> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "xsd:string such as http://foo.bar.com/someglycan?id=%s"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#glycan_database> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_valence
<http://purl.jp/bio/12/glyco/glycan#has_valence> rdf:type :DatatypeProperty ;
rdfs:comment "Object is a valence of substituent."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_version
<http://purl.jp/bio/12/glyco/glycan#has_version> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Version of the software used"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#software> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#injection_volume
<http://purl.jp/bio/12/glyco/glycan#injection_volume> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:range xsd:double ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_lc>
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms>
)
] .
### http://purl.jp/bio/12/glyco/glycan#is_ambiguous
<http://purl.jp/bio/12/glyco/glycan#is_ambiguous> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Boolean indicating whether the subject is a fully defined structure including all linkage information, or not."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#saccharide> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#is_fragment
<http://purl.jp/bio/12/glyco/glycan#is_fragment> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "If the synthesised or modeled molecule is just a fragment or the complete target molecule"^^xsd:string ;
rdfs:range xsd:boolean ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#source_modeled>
<http://purl.jp/bio/12/glyco/glycan#source_synthetic>
)
] .
### http://purl.jp/bio/12/glyco/glycan#is_fuzzy
<http://purl.jp/bio/12/glyco/glycan#is_fuzzy> rdf:type :DatatypeProperty ;
rdfs:comment "If a substituent is fuzzy."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#is_linkable
<http://purl.jp/bio/12/glyco/glycan#is_linkable> rdf:type :DatatypeProperty ;
rdfs:comment "If a substituent is linkable."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#substituent> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#is_missing
<http://purl.jp/bio/12/glyco/glycan#is_missing> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "If true unassigned signal. NO if a signal can not exist, rather than its unknown."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#is_primary_name
<http://purl.jp/bio/12/glyco/glycan#is_primary_name> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "indicates whether this is the name that should be used to uniquely identify this monosaccharide in the given :notation_scheme, or whether this is a secondary alias name (e.g. to indicate whether a trivial name or a systematic name is to be used preferentially in case a trivial name exists for this monosaccharide)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#is_trivial_name
<http://purl.jp/bio/12/glyco/glycan#is_trivial_name> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Indicates whether this is a trivial name that implies modifications, or a systematic name (e.g. KDO vs. D-3-deoxy-manOct2ulo-onic)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> ;
rdfs:range xsd:boolean .
### http://purl.jp/bio/12/glyco/glycan#of_carbon_number
<http://purl.jp/bio/12/glyco/glycan#of_carbon_number> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "carbon atom number"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#signal> ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#ratio
<http://purl.jp/bio/12/glyco/glycan#ratio> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Ratio of a solvent in a solvent mixture. (100 if there is only one solvent)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#solvent_part> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_amount_mg
<http://purl.jp/bio/12/glyco/glycan#used_amount_mg> rdf:type :DatatypeProperty ;
rdfs:comment "sample weight."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_column_temperature
<http://purl.jp/bio/12/glyco/glycan#used_column_temperature> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Column temperature in C."^^xsd:string ;
rdfs:range xsd:double ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_lc>
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms>
)
] .
### http://purl.jp/bio/12/glyco/glycan#used_concentration
<http://purl.jp/bio/12/glyco/glycan#used_concentration> rdf:type :DatatypeProperty ;
rdfs:comment "sample concentration."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range rdfs:Literal .
### http://purl.jp/bio/12/glyco/glycan#used_frequency
<http://purl.jp/bio/12/glyco/glycan#used_frequency> rdf:type :DatatypeProperty ;
rdfs:comment "frequency of NMR spectrometer."^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_lc_flow_rate
<http://purl.jp/bio/12/glyco/glycan#used_lc_flow_rate> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Flow rate refers to the flow of mobile phase through the column and is measured in ml/min."^^xsd:string ;
rdfs:range xsd:string ;
rdfs:domain [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#evidence_lc>
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms>
)
] .
### http://purl.jp/bio/12/glyco/glycan#used_lc_run_time
<http://purl.jp/bio/12/glyco/glycan#used_lc_run_time> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "Runtime of the LC "^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#gradient> ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_percent_max
<http://purl.jp/bio/12/glyco/glycan#used_percent_max> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#gradient> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_percent_min
<http://purl.jp/bio/12/glyco/glycan#used_percent_min> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#gradient> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_ph
<http://purl.jp/bio/12/glyco/glycan#used_ph> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "pH of solution"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_temperature
<http://purl.jp/bio/12/glyco/glycan#used_temperature> rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:comment "value or range in K (literal)"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#evidence_nmr> ;
rdfs:range xsd:string .
### http://purl.org/dc/elements/1.1/publisher
dc:publisher rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:string .
### http://purl.org/dc/elements/1.1/title
dc:title rdf:type :DatatypeProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:string .
### http://purl.org/dc/terms/issued
dcterms:issued rdf:type :DatatypeProperty ;
rdfs:comment "Publication year"^^xsd:string ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:integer .
### http://purl.org/ontology/bibo/authorList
bibo:authorList rdf:type :DatatypeProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range rdfs:Literal .
### http://purl.org/ontology/bibo/pageEnd
bibo:pageEnd rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:string .
### http://purl.org/ontology/bibo/pageStart
bibo:pageStart rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:string .
### http://purl.org/ontology/bibo/shortTitle
bibo:shortTitle rdf:type :DatatypeProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:string .
### http://purl.org/ontology/bibo/volume
bibo:volume rdf:type :DatatypeProperty ,
:FunctionalProperty ;
rdfs:domain <http://purl.jp/bio/12/glyco/glycan#citation> ;
rdfs:range xsd:string .
#################################################################
#
# Classes
#
#################################################################
### http://purl.jp/bio/12/glyco/glycan#N-glycan
<http://purl.jp/bio/12/glyco/glycan#N-glycan> rdf:type :Class ;
rdfs:label "N-glycan"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#saccharide> ;
rdfs:comment "A subclass of saccharide primarily found on eukaryotic glycoproteins. This class of glycan typically contains a specific glycan substructure motif (http://jcggdb.jp/idb/motif?id=JCGG-MOTIF1001), and the reducing terminal GlcNAc of the glycan is attached to the N-atom of an asparagine residue of the protein in a beta configuration. A class of glycoconjugate including dolichyl-diphospho esters also involves the same glycan motif, but they are attached in an alpha configuration. The dolichyl-diphosphooligosaccharides are precursors or intermediates in the protein N-glycosylation process, by which the specific dolichyl-diphosphooligosaccharide (http://jcggdb.jp/idb/jcggdb/JCGG-STR015745) is transferred from the dolichyl phospohate ester to an asparagine residue of the protein by an oligosacchayl transferase (GO:0004579)."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#O-glycan
<http://purl.jp/bio/12/glyco/glycan#O-glycan> rdf:type :Class ;
rdfs:label "O-glycan"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#saccharide> ;
rdfs:comment "A subclass of saccharide primarily found in glycoproteins This class is subdivided into a variety of subclasses due to its expression in a variety of biological sources. In terms of structure, O-glycans either consist of a GalNAc, Man, Fuc, Glc residue at the reducing end attached to a serine, threonine, hydroxylysine or hydroxyproline residue in a protein sequence in an alpha configuration."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration
<http://purl.jp/bio/12/glyco/glycan#absolute_configuration> rdf:type :Class ;
rdfs:label "Absolute Configuration"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Absolute configuration of a monosaccharide basetype. Possible values are D, L or Unknown."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct
<http://purl.jp/bio/12/glyco/glycan#adduct> rdf:type :Class ;
rdfs:label "Adduct"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#adduct_ion
<http://purl.jp/bio/12/glyco/glycan#adduct_ion> rdf:type :Class ;
rdfs:label "Adduct Ion"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#aglycon
<http://purl.jp/bio/12/glyco/glycan#aglycon> rdf:type :Class ;
rdfs:label "Aglycon"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#compound> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#amino_acid>
<http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] ;
rdfs:comment "Instances of this class represent the aglyca which are covalently attached to the glycans. It contains information about the aglycon, the linkage position in aglycon and glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#amino_acid
<http://purl.jp/bio/12/glyco/glycan#amino_acid> rdf:type :Class ;
rdfs:label "Amino Acid"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#compound> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#aglycon>
<http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] .
### http://purl.jp/bio/12/glyco/glycan#anomer
<http://purl.jp/bio/12/glyco/glycan#anomer> rdf:type :Class ;
rdfs:label "Anomer"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Anomer of a monosaccharide. Possible values are alpha, beta, unknown or none."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#antibody
<http://purl.jp/bio/12/glyco/glycan#antibody> rdf:type :Class ;
rdfs:label "Antibody"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycan_binder> ;
rdfs:comment "A subclass of glycan_binder which binds to an epitope; in this namespace, this is a glycoepitope, which may be a (part of a) glycan or a part of a glycoconjugate."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#basetype
<http://purl.jp/bio/12/glyco/glycan#basetype> rdf:type :Class ;
rdfs:label "Basetype"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Basetype of the monosaccharide in accordance to GlycoCT and MonosaccharideDB definitions."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#biological_repeat_unit
<http://purl.jp/bio/12/glyco/glycan#biological_repeat_unit> rdf:type :Class ;
rdfs:label "Biological Repeat Unit"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#motif> ;
rdfs:comment "A biological repeat unit contains the monosaccharides of the repetitive oligosaccharide unit in the arrangement as they are synthesized."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#buffer
<http://purl.jp/bio/12/glyco/glycan#buffer> rdf:type :Class ;
rdfs:label "Buffer"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#role> ;
rdfs:comment "A buffer is an aqueous solution consisting of a mixture of a weak acid and its conjugate base or a weak base and its conjugate acid."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> rdf:type :Class ;
rdfs:label "Carbohydrate Format"^^xsd:string ;
rdfs:comment "Instances of this class are the carbohydrate sequence formats. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#chemical_release
<http://purl.jp/bio/12/glyco/glycan#chemical_release> rdf:type :Class ;
rdfs:label "Chemical Release"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycan_release> ;
rdfs:comment "Release of glycan that is used chemical reaction."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#chemical_repeat_unit
<http://purl.jp/bio/12/glyco/glycan#chemical_repeat_unit> rdf:type :Class ;
rdfs:label "Chemical Repeat Unit"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#motif> ;
rdfs:comment "A chemical repeat unit is generated when a polysaccharide is chopped down for the analysis. The sequence of the oligomer is based on the reaction chopping down the glycan and may not represent the biological repeat unit."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#citation
<http://purl.jp/bio/12/glyco/glycan#citation> rdf:type :Class ;
rdfs:label "Citation"^^xsd:string ;
rdfs:comment "References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#component
<http://purl.jp/bio/12/glyco/glycan#component> rdf:type :Class ;
rdfs:label "Component"^^xsd:string ;
rdfs:subClassOf :Thing ,
[ rdf:type :Restriction ;
:onProperty <http://purl.jp/bio/12/glyco/glycan#has_monosaccharide> ;
:someValuesFrom <http://purl.jp/bio/12/glyco/glycan#monosaccharide>
] ;
rdfs:comment "Components are used to specify the composition of glycans. A component has a reference to the molecule (monosaccharide, substituent) and a number of occurrences for this molecule in the glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#compound
<http://purl.jp/bio/12/glyco/glycan#compound> rdf:type :Class ;
rdfs:label "Compound"^^xsd:string ;
rdfs:comment "Superclass of types of glycan related molecules and fragments."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#configuration
<http://purl.jp/bio/12/glyco/glycan#configuration> rdf:type :Class ;
rdfs:label "Configuration"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Configuration of a monosaccharide. Each monosaccharide can have several configurations (e.g. dgro-dgal). Each configuration consist of a absolute configuration and a relative configuration."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification
<http://purl.jp/bio/12/glyco/glycan#core_modification> rdf:type :Class ;
rdfs:label "Core Modification"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Core modification of a monosaccharide. A core modification consists of a modification type and the position(s) at which this modification happened."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type
<http://purl.jp/bio/12/glyco/glycan#core_modification_type> rdf:type :Class ;
rdfs:label "Core Modification Type"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "List of core modifications that can appear on a monosaccharide."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#cyclic_glycan
<http://purl.jp/bio/12/glyco/glycan#cyclic_glycan> rdf:type :Class ;
rdfs:label "Cyclic Glycan"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#saccharide> ;
rdfs:comment "Cyclic glycans are a special form of glycans which are rarely found in nature. As implied by the name, they form cyclic structures, in contrast to the branched tree structures of commonly known glycans."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#enzymatic_release
<http://purl.jp/bio/12/glyco/glycan#enzymatic_release> rdf:type :Class ;
rdfs:label "Enzymatic Release"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycan_release> ;
rdfs:comment "Release of glycan by an enzymatic reaction."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#enzyme
<http://purl.jp/bio/12/glyco/glycan#enzyme> rdf:type :Class ;
rdfs:label "Enzyme"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#role> ;
rdfs:comment "Enzyme that take part in synthesis anddegradation of glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence
<http://purl.jp/bio/12/glyco/glycan#evidence> rdf:type :Class ;
rdfs:label "Evidence"^^xsd:string ;
rdfs:comment "An evidence is any kind of experimental data that can be linked to glycans. These are mainly experiments that elucidate the carbohydrate structure or feature but can also include experiments for creating carbohydrates for example by synthesis."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_IGOT
<http://purl.jp/bio/12/glyco/glycan#evidence_IGOT> rdf:type :Class ;
rdfs:label "Evidence IGOT"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms> ;
rdfs:comment "Is an IGOT experiment, subclass of glycan:evidence_lc_ms. IGOT experiment is a procedure for the large-scale identification of N-glycosylated proteins, with isotope-coded glycosylation-site-specific tagging. (PMID: 12754521)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_binding
<http://purl.jp/bio/12/glyco/glycan#evidence_binding> rdf:type :Class ;
rdfs:label "Evidence Binding"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:comment "Entities of this class represent molecular interactions between instances of glycan:saccharide and glycan:glycan_binder, elucidated by experimental results. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_binding_antibody
<http://purl.jp/bio/12/glyco/glycan#evidence_binding_antibody> rdf:type :Class ;
rdfs:label "Evidence Binding Antibody"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence_binding> ;
rdfs:comment "Entities of this class represent molecular interactions between instances of epitope and antibody, elucidated by experimental results. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_binding_lectin
<http://purl.jp/bio/12/glyco/glycan#evidence_binding_lectin> rdf:type :Class ;
rdfs:label "Evidence Binding Lectin"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence_binding> ;
rdfs:comment "Entities of this class represent molecular interactions between instances of glycan and lectin, elucidated by experimental results."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_ce
<http://purl.jp/bio/12/glyco/glycan#evidence_ce> rdf:type :Class ;
rdfs:label "Evidence CE"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:comment "Experiments using capillary electrophoresis to identify and characterize carbohydrate structures."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_lc
<http://purl.jp/bio/12/glyco/glycan#evidence_lc> rdf:type :Class ;
rdfs:label "Evidence LC"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:comment "Experiments using LC techniques to identify and characterize carbohydrates or used for separating glycans by charge or other retention properties."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms
<http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms> rdf:type :Class ;
rdfs:label "Evidence LC MS"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence_ms> .
### http://purl.jp/bio/12/glyco/glycan#evidence_ms
<http://purl.jp/bio/12/glyco/glycan#evidence_ms> rdf:type :Class ;
rdfs:label "Evidence MS"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:comment "Experiments using mass spectrometry to identify the carbohydrate structures."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_nmr
<http://purl.jp/bio/12/glyco/glycan#evidence_nmr> rdf:type :Class ;
rdfs:label "Evidence NMR"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#evidence> ;
rdfs:comment "Experiments using NMR to identify the carbohydrate structure."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type
<http://purl.jp/bio/12/glyco/glycan#evidence_type> rdf:type :Class ;
rdfs:label "Evidence Type"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "List of evidence types."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_binder
<http://purl.jp/bio/12/glyco/glycan#glycan_binder> rdf:type :Class ;
rdfs:label "Glycan Binder"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#role> ;
rdfs:comment "A class of compound that has affinity to a glycan or glycoconjugate. Usually a reference to a lectin, virus, bacteria, etc."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_database
<http://purl.jp/bio/12/glyco/glycan#glycan_database> rdf:type :Class ;
rdfs:label "Glycan Database"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "A class representing databases that store glycans and related information. If possible, owl:sameAs should be used referencing the biosharing entry for this database."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_database_category
<http://purl.jp/bio/12/glyco/glycan#glycan_database_category> rdf:type :Class ;
rdfs:label "Glycan Database Category"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "Instances of this class are the categories for the classification of glycan databases."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_epitope
<http://purl.jp/bio/12/glyco/glycan#glycan_epitope> rdf:type :Class ;
rdfs:label "Glycan Epitope"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycan_motif> ;
rdfs:comment "A glycan epitope is a special motif which has a known biological function."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_motif
<http://purl.jp/bio/12/glyco/glycan#glycan_motif> rdf:type :Class ;
rdfs:label "Glycan Motif"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#motif> ;
rdfs:comment "A glycan motif is a sub-structure of glycans that has been named because of its frequent appearance or because of the biological meaning. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_release
<http://purl.jp/bio/12/glyco/glycan#glycan_release> rdf:type :Class ;
rdfs:label "Glycan Release"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#sample_preparation> ;
rdfs:comment "A class for process of glycan release, including chemical and enzymatic reaction."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoconjugate
<http://purl.jp/bio/12/glyco/glycan#glycoconjugate> rdf:type :Class ;
rdfs:label "Glycoconjugate"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#compound> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#aglycon>
<http://purl.jp/bio/12/glyco/glycan#amino_acid>
<http://purl.jp/bio/12/glyco/glycan#saccharide>
)
] ;
rdfs:comment "Superclass of biomolecules consisting of a glycan part and an aglycon part, that are covalently attached to each other."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoconjugate_sequence
<http://purl.jp/bio/12/glyco/glycan#glycoconjugate_sequence> rdf:type :Class ;
rdfs:label "Glycoconjugate Sequence"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#sequence> ;
rdfs:comment "Sequence of the glycoconjugate that includes the carbohydrate and the aglyca. Predicates should be selected based on the format used to represent the structure."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycolipid
<http://purl.jp/bio/12/glyco/glycan#glycolipid> rdf:type :Class ;
rdfs:label "Glycolipid"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> ;
rdfs:comment "Lipid with saccharide(s) attached by glycosidic bond(s). "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycopeptide
<http://purl.jp/bio/12/glyco/glycan#glycopeptide> rdf:type :Class ;
rdfs:label "Glycopeptide"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> ;
rdfs:comment "A class involves artificial degradation products of glycoproteins with protease digestion, which typically results from a proteomics experiment. There are reasons or traces that at least one amino acid residue of the peptide is glycosylated."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoprotein
<http://purl.jp/bio/12/glyco/glycan#glycoprotein> rdf:type :Class ;
rdfs:label "Glycoprotein"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> ;
rdfs:comment "A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosequence
<http://purl.jp/bio/12/glyco/glycan#glycosequence> rdf:type :Class ;
rdfs:label "Glycosequence"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#sequence> ;
rdfs:comment "Sequence of the glycan in a specified sequence format."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoside
<http://purl.jp/bio/12/glyco/glycan#glycoside> rdf:type :Class ;
rdfs:label "Glycoside"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> .
### http://purl.jp/bio/12/glyco/glycan#glycosyl_hydrolase_reaction
<http://purl.jp/bio/12/glyco/glycan#glycosyl_hydrolase_reaction> rdf:type :Class ;
rdfs:label "Glycosyl Hydrolase Reaction"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#reaction> ;
rdfs:comment "Instances of this class are glycosyl hydrolase reactions which releases monosaccharide or oligosaccharides from the glycan or glycoconjugate."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosylated_AA
<http://purl.jp/bio/12/glyco/glycan#glycosylated_AA> rdf:type :Class ;
rdfs:label "Glycosylated Amino Acid"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycoconjugate> ;
rdfs:comment "An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosyltransferase_reaction
<http://purl.jp/bio/12/glyco/glycan#glycosyltransferase_reaction> rdf:type :Class ;
rdfs:label "Glycosyltransferase Reaction"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#reaction> ;
rdfs:comment "Instances of this class are glycosyltransferase reactions that build up glycans or glycoconjugates by attaching additional monosaccharides or oligosaccharides to them."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#gradient
<http://purl.jp/bio/12/glyco/glycan#gradient> rdf:type :Class ;
rdfs:label "Gradient"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#lc_property> .
### http://purl.jp/bio/12/glyco/glycan#image
<http://purl.jp/bio/12/glyco/glycan#image> rdf:type :Class ;
rdfs:label "Image"^^xsd:string ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Image> ;
rdfs:comment "Image class for representing glycan images."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lc_chromatogram
<http://purl.jp/bio/12/glyco/glycan#lc_chromatogram> rdf:type :Class ;
rdfs:label "LC Chromatogram"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#lc_property> .
### http://purl.jp/bio/12/glyco/glycan#lc_column
<http://purl.jp/bio/12/glyco/glycan#lc_column> rdf:type :Class ;
rdfs:label "LC Column"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#lc_property> .
### http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram
<http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram> rdf:type :Class ;
rdfs:label "LC Digest Chromatogram"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#lc_property> .
### http://purl.jp/bio/12/glyco/glycan#lc_peak
<http://purl.jp/bio/12/glyco/glycan#lc_peak> rdf:type :Class ;
rdfs:label "LC Peak"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#lc_property> .
### http://purl.jp/bio/12/glyco/glycan#lc_property
<http://purl.jp/bio/12/glyco/glycan#lc_property> rdf:type :Class ;
rdfs:label "LC Property"^^xsd:string ;
rdfs:comment "Class that contains Liquid Chromatography properties such as gradient, Lc column."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lectin
<http://purl.jp/bio/12/glyco/glycan#lectin> rdf:type :Class ;
rdfs:label "Lectin"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#glycan_binder> ;
rdfs:comment "A class of protein that binds to glycans but is neither an antibody nor an enzyme."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type
<http://purl.jp/bio/12/glyco/glycan#linkage_type> rdf:type :Class ;
rdfs:label "Linkage Type"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "List of linkage types that can occur on the monosaccharide side of monosaccharide to substituent linkages."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lipid
<http://purl.jp/bio/12/glyco/glycan#lipid> rdf:type :Class ;
rdfs:label "Lipid"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#aglycon> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#peptide>
<http://purl.jp/bio/12/glyco/glycan#protein>
)
] .
### http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device
<http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device> rdf:type :Class ;
rdfs:label "Mass Spectrometry Device"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#mass_spectrum
<http://purl.jp/bio/12/glyco/glycan#mass_spectrum> rdf:type :Class ;
rdfs:label "Mass Spectrum"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide
<http://purl.jp/bio/12/glyco/glycan#monosaccharide> rdf:type :Class ;
rdfs:label "Monosaccharide"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#saccharide> ;
rdfs:comment """Instances of this class represent monosaccharides and their information. These monosaccharides are used to specify the composition of glycans, referenced by glycan:component. Sample URI:
http://www.monosaccharidedb.org/rdf/monosaccharide.action?name=o-dall-HEX-0:0"""^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias
<http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias> rdf:type :Class ;
rdfs:label "Monosaccharide Alias"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Alternative names for the monosaccharide in different databases or resources. The aliases consist of the name and the monosaccharide notation scheme."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme
<http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme> rdf:type :Class ;
rdfs:label "Monosaccharide Notation Scheme"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "List of monosaccharide notation scheme. One monosaccharide can have several different names depending on the notation scheme. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_property
<http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> rdf:type :Class ;
rdfs:label "Monosaccharide Property"^^xsd:string ;
rdfs:comment "Class that contains all monosaccharides properties such as anomer, basetype etc."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#motif
<http://purl.jp/bio/12/glyco/glycan#motif> rdf:type :Class ;
rdfs:label "Motif"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_annotation
<http://purl.jp/bio/12/glyco/glycan#ms_annotation> rdf:type :Class ;
rdfs:label "MS Annotation"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type
<http://purl.jp/bio/12/glyco/glycan#ms_fragment_type> rdf:type :Class ;
rdfs:label "MS Fragment Type"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#ms_peak
<http://purl.jp/bio/12/glyco/glycan#ms_peak> rdf:type :Class ;
rdfs:label "MS Peak"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> ;
rdfs:comment "Instances represent a peak in a mass spectrometry data consisting of an m/z value, intensity value and optional a charge state."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_property
<http://purl.jp/bio/12/glyco/glycan#ms_property> rdf:type :Class ;
rdfs:label "MS Property"^^xsd:string ;
rdfs:comment "Class that contains Mass Spectrometry properties such as adduct, adduct ion etc."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#msn_spectrum
<http://purl.jp/bio/12/glyco/glycan#msn_spectrum> rdf:type :Class ;
rdfs:label "Msn Spectrum"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#mass_spectrum> .
### http://purl.jp/bio/12/glyco/glycan#neutral_loss
<http://purl.jp/bio/12/glyco/glycan#neutral_loss> rdf:type :Class ;
rdfs:label "Neutral Loss"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#ms_property> .
### http://purl.jp/bio/12/glyco/glycan#nmr_property
<http://purl.jp/bio/12/glyco/glycan#nmr_property> rdf:type :Class ;
rdfs:label "NMR Property"^^xsd:string ;
rdfs:comment "Parentclass for all classes used in NMR evidences."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#peptide
<http://purl.jp/bio/12/glyco/glycan#peptide> rdf:type :Class ;
rdfs:label "Peptide"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#aglycon> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#lipid>
<http://purl.jp/bio/12/glyco/glycan#protein>
)
] ;
rdfs:comment "Part of a protein amino acid sequence generated by digestion for analysis."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#polymerization_degree
<http://purl.jp/bio/12/glyco/glycan#polymerization_degree> rdf:type :Class ;
rdfs:label "Polymerization Degree"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "A repeat is a property of a polysaccharide that specifies how often the oligomer part is repeated to form the polysaccharide."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#polysaccharide
<http://purl.jp/bio/12/glyco/glycan#polysaccharide> rdf:type :Class ;
rdfs:label "Polysaccharide"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#saccharide> ;
rdfs:comment "Polysaccharides are a special form of glycans that consist of large repetitive oligosaccharide units. Often the exact number of repetitions cannot be specified because the experimental technique does not allow this or because the number of repetition in nature varies."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#profile_spectrum
<http://purl.jp/bio/12/glyco/glycan#profile_spectrum> rdf:type :Class ;
rdfs:label "Profile Spectrum"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#mass_spectrum> .
### http://purl.jp/bio/12/glyco/glycan#protein
<http://purl.jp/bio/12/glyco/glycan#protein> rdf:type :Class ;
rdfs:label "Protein"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#aglycon> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#lipid>
<http://purl.jp/bio/12/glyco/glycan#peptide>
)
] ;
rdfs:comment "Proteinous part of a glycoprotein that is equivalent to the nascent peptide or protein entities found in UniProt or other protein databases."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#reaction
<http://purl.jp/bio/12/glyco/glycan#reaction> rdf:type :Class ;
rdfs:label "Reaction"^^xsd:string ;
rdfs:comment "Class for reaction process to create or degrade glycans or glycoconjugates."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#referenced_compound
<http://purl.jp/bio/12/glyco/glycan#referenced_compound> rdf:type :Class ;
rdfs:label "Referenced Compound"^^xsd:string ;
rdfs:comment "Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#relative_configuration
<http://purl.jp/bio/12/glyco/glycan#relative_configuration> rdf:type :Class ;
rdfs:label "Relative Configuration"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "List of relative monosaccharide configurations according to IUPAC."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute
<http://purl.jp/bio/12/glyco/glycan#repeat_attribute> rdf:type :Class ;
rdfs:label "Repeat Attribute"^^xsd:string ;
rdfs:comment "List of possible attributes to specify the repeat count. Possible values are average, exact, minimum, maximum or unknown."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#resource_entry
<http://purl.jp/bio/12/glyco/glycan#resource_entry> rdf:type :Class ;
rdfs:label "Resource Entry"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "A resource entry describes an entry about the glycan in another database."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ring_type
<http://purl.jp/bio/12/glyco/glycan#ring_type> rdf:type :Class ;
rdfs:label "Ring Type"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Ringtype of a basetype."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#role
<http://purl.jp/bio/12/glyco/glycan#role> rdf:type :Class ;
rdfs:label "Role"^^xsd:string ;
rdfs:comment "Classification hierarchy for molecular functions."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#saccharide
<http://purl.jp/bio/12/glyco/glycan#saccharide> rdf:type :Class ;
rdfs:label "Saccharide"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#compound> ;
:disjointWith [ rdf:type :Class ;
:unionOf ( <http://purl.jp/bio/12/glyco/glycan#aglycon>
<http://purl.jp/bio/12/glyco/glycan#amino_acid>
<http://purl.jp/bio/12/glyco/glycan#glycoconjugate>
)
] ;
rdfs:comment "Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#sample_preparation
<http://purl.jp/bio/12/glyco/glycan#sample_preparation> rdf:type :Class ;
rdfs:label "Sample Preparation"^^xsd:string ;
rdfs:comment "A process which is the syntesis or preparation of sample for glycan analysis."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#sequence
<http://purl.jp/bio/12/glyco/glycan#sequence> rdf:type :Class ;
rdfs:label "Sequence"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "A sequence is the textual description of a molecule. For example FASTA sequences for proteins / peptides. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#signal
<http://purl.jp/bio/12/glyco/glycan#signal> rdf:type :Class ;
rdfs:label "Signal"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#nmr_property> ;
rdfs:comment "A signal is a NMR data point."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#software
<http://purl.jp/bio/12/glyco/glycan#software> rdf:type :Class ;
rdfs:label "Software"^^xsd:string ;
rdfs:comment "Software that has been utilized for the glycan. For example software used to model the glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#solvent
<http://purl.jp/bio/12/glyco/glycan#solvent> rdf:type :Class ;
rdfs:label "Solvent"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#role> ;
rdfs:comment "A solvent is a substance that dissolves a solute (a chemically different liquid, solid or gas), resulting in a solution."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#solvent_part
<http://purl.jp/bio/12/glyco/glycan#solvent_part> rdf:type :Class ;
rdfs:label "Solvent Part"^^xsd:string ;
rdfs:comment "A solvent can consist of a mixture of different molecules. For each molecule a solvent part with the ratio and the molecule is created."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source
<http://purl.jp/bio/12/glyco/glycan#source> rdf:type :Class ;
rdfs:label "Source"^^xsd:string ;
rdfs:subClassOf :Thing ;
rdfs:comment "Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_modeled
<http://purl.jp/bio/12/glyco/glycan#source_modeled> rdf:type :Class ;
rdfs:label "Source Modeled"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#source> ;
rdfs:comment "Class for modeled source. Instance contain information about the software used for modeling and the target organism."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_natural
<http://purl.jp/bio/12/glyco/glycan#source_natural> rdf:type :Class ;
rdfs:label "Source Natural"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#source> ;
rdfs:comment "Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_sample
<http://purl.jp/bio/12/glyco/glycan#source_sample> rdf:type :Class ;
rdfs:label "Source Sample"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#source> ;
rdfs:comment "Class for source from sample. Instance contain sample type."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_synthetic
<http://purl.jp/bio/12/glyco/glycan#source_synthetic> rdf:type :Class ;
rdfs:label "Source Synthetic"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#source> ;
rdfs:comment "Class for source for synthetic glycans. In contains information about the type of synthesis approach used and if applicable the original biological source that was tried to mimic. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#subspectrum
<http://purl.jp/bio/12/glyco/glycan#subspectrum> rdf:type :Class ;
rdfs:label "Subspectrum"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#nmr_property> ,
[ rdf:type :Restriction ;
:onProperty <http://purl.jp/bio/12/glyco/glycan#has_signal> ;
:someValuesFrom <http://purl.jp/bio/12/glyco/glycan#signal>
] ;
rdfs:comment "Subspectrum of NMR data. It contains the annotated signals."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent
<http://purl.jp/bio/12/glyco/glycan#substituent> rdf:type :Class ;
rdfs:label "Substituent"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Substition of a monosaccharide by another molecule. The substituent consists of the substituent type and the linkage between monosaccharide and substituent. For example: http://www.monosaccharidedb.org/rdf/substituent/ethyl.rdf"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_linkage
<http://purl.jp/bio/12/glyco/glycan#substituent_linkage> rdf:type :Class ;
rdfs:label "Substituent Linkage"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "Linkage between a monosaccharide basetype and a substituent. It consist of the linkage position on the basetype side and the substituent side, and of the linkage type."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type
<http://purl.jp/bio/12/glyco/glycan#substituent_type> rdf:type :Class ;
rdfs:label "Substituent Type"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#monosaccharide_property> ;
rdfs:comment "List of substituent types possible on monosaccharides."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#sulfotransferase_reaction
<http://purl.jp/bio/12/glyco/glycan#sulfotransferase_reaction> rdf:type :Class ;
rdfs:label "Sulfotransferase Reaction"^^xsd:string ;
rdfs:subClassOf <http://purl.jp/bio/12/glyco/glycan#reaction> ;
rdfs:comment "Instances of this class are sulfotransferase reactions that modifies glycans or glycoconjugates by attaching sulfuric moiety to them."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format
<http://purl.jp/bio/12/glyco/glycan#symbol_format> rdf:type :Class ;
rdfs:label "Symbol Format"^^xsd:string ;
rdfs:comment "Graphical symbol formats used to represent glycans. This includes the symbol format form the CFG and from UOXF."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#synthetic_type
<http://purl.jp/bio/12/glyco/glycan#synthetic_type> rdf:type :Class ;
rdfs:label "Synthetic Type"^^xsd:string ;
rdfs:comment "Type of synthesis used for creating the glycan. Possible values are chemical synthesis, enzymatic synthesis and chemoenzymetic synthesis."^^xsd:string .
### http://purl.obolibrary.org/obo/MS_1000008
psi:MS_1000008 rdfs:label "Ionization Type"^^xsd:string ;
rdfs:comment "PSI: The method by which gas phase ions are generated from the sample."^^xsd:string .
### http://purl.obolibrary.org/obo/MS_1000031
psi:MS_1000031 rdfs:label "Instrument Model"^^xsd:string ;
rdfs:comment "PSI: Instrument model name not including the vendor&#39;s name."^^xsd:string .
### http://purl.obolibrary.org/obo/MS_1000443
psi:MS_1000443 rdfs:label "Mass Analyzer Type"^^xsd:string ;
rdfs:comment "PSI: Mass analyzer separates the ions according to their mass-to-charge ratio."^^xsd:string .
### http://www.uniprot.org/core/Glycosylation_Annotation
uniprot:Glycosylation_Annotation rdfs:label "Glycosylation Annotation"^^xsd:string ;
rdfs:comment "Uniprot term for Glycosylation type (e.g. N-glycosylation)"^^xsd:string .
### http://www.uniprot.org/core/Protein
uniprot:Protein rdfs:label "Protein"^^xsd:string ;
rdfs:comment "Uniprot protein class."^^xsd:string .
### http://www.uniprot.org/core/Taxon
uniprot:Taxon rdfs:comment "Uniprot taxon class."^^xsd:string .
### http://xmlns.com/foaf/0.1/Image
<http://xmlns.com/foaf/0.1/Image> rdfs:label "Image"^^xsd:string ;
rdfs:comment "Image class."^^xsd:string .
#################################################################
#
# Individuals
#
#################################################################
### http://purl.jp/bio/12/glyco/glycan#C5D5N
<http://purl.jp/bio/12/glyco/glycan#C5D5N> rdf:type <http://purl.jp/bio/12/glyco/glycan#solvent> ,
:NamedIndividual .
### http://purl.jp/bio/12/glyco/glycan#CD3OD
<http://purl.jp/bio/12/glyco/glycan#CD3OD> rdf:type <http://purl.jp/bio/12/glyco/glycan#solvent> ,
:NamedIndividual .
### http://purl.jp/bio/12/glyco/glycan#CDCl3
<http://purl.jp/bio/12/glyco/glycan#CDCl3> rdf:type <http://purl.jp/bio/12/glyco/glycan#solvent> ,
:NamedIndividual .
### http://purl.jp/bio/12/glyco/glycan#D2O
<http://purl.jp/bio/12/glyco/glycan#D2O> rdf:type <http://purl.jp/bio/12/glyco/glycan#solvent> ,
:NamedIndividual ;
rdfs:label "D2O"^^xsd:string ;
rdfs:comment "Heavy water, formally called deuterium oxide. Deuterium oxide is used in NMR spectroscopy when the solvent of interest is water and the nuclide of interest is hydrogen."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#DMSO
<http://purl.jp/bio/12/glyco/glycan#DMSO> rdf:type <http://purl.jp/bio/12/glyco/glycan#solvent> ,
:NamedIndividual ;
rdfs:label "DMSO"^^xsd:string ;
rdfs:comment "Dimethyl sulfoxide (DMSO) is an organosulfur compound with the formula (CH3)2SO. This colorless liquid is an important polar aprotic solvent that dissolves both polar and nonpolar compounds and is miscible in a wide range of organic solvents as well as water."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#H2O
<http://purl.jp/bio/12/glyco/glycan#H2O> rdf:type <http://purl.jp/bio/12/glyco/glycan#solvent> ,
:NamedIndividual ;
rdfs:comment "Water"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#PNGaseF_release
<http://purl.jp/bio/12/glyco/glycan#PNGaseF_release> rdf:type <http://purl.jp/bio/12/glyco/glycan#enzymatic_release> ,
:NamedIndividual ;
rdfs:label "PNGaseF release"^^xsd:string ;
rdfs:comment "Release of glycan that is used PNGaseF."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration_dexter
<http://purl.jp/bio/12/glyco/glycan#absolute_configuration_dexter> rdf:type <http://purl.jp/bio/12/glyco/glycan#absolute_configuration> ,
:NamedIndividual ;
rdfs:label "dexter"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus
<http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus> rdf:type <http://purl.jp/bio/12/glyco/glycan#absolute_configuration> ,
:NamedIndividual ;
rdfs:label "laevus"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration_unknown
<http://purl.jp/bio/12/glyco/glycan#absolute_configuration_unknown> rdf:type <http://purl.jp/bio/12/glyco/glycan#absolute_configuration> ,
:NamedIndividual ;
rdfs:label "unknown"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct_ion_h
<http://purl.jp/bio/12/glyco/glycan#adduct_ion_h> rdf:type <http://purl.jp/bio/12/glyco/glycan#adduct_ion> ,
:NamedIndividual ;
rdfs:label "H+"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct_ion_na
<http://purl.jp/bio/12/glyco/glycan#adduct_ion_na> rdf:type <http://purl.jp/bio/12/glyco/glycan#adduct_ion> ,
:NamedIndividual ;
rdfs:label "Na+"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#alanine
<http://purl.jp/bio/12/glyco/glycan#alanine> rdf:type <http://purl.jp/bio/12/glyco/glycan#amino_acid> ,
:NamedIndividual ;
rdfs:label "Alanine"^^xsd:string ;
<http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration> <http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus> .
### http://purl.jp/bio/12/glyco/glycan#allo
<http://purl.jp/bio/12/glyco/glycan#allo> rdf:type <http://purl.jp/bio/12/glyco/glycan#relative_configuration> ,
:NamedIndividual ;
rdfs:label "allo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#altro
<http://purl.jp/bio/12/glyco/glycan#altro> rdf:type <http://purl.jp/bio/12/glyco/glycan#relative_configuration> ,
:NamedIndividual ;
rdfs:label "altro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_alpha
<http://purl.jp/bio/12/glyco/glycan#anomer_alpha> rdf:type <http://purl.jp/bio/12/glyco/glycan#anomer> ,
:NamedIndividual ;
rdfs:label "alpha"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_beta
<http://purl.jp/bio/12/glyco/glycan#anomer_beta> rdf:type <http://purl.jp/bio/12/glyco/glycan#anomer> ,
:NamedIndividual ;
rdfs:label "beta"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_none
<http://purl.jp/bio/12/glyco/glycan#anomer_none> rdf:type <http://purl.jp/bio/12/glyco/glycan#anomer> ,
:NamedIndividual ;
rdfs:label "none"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_unknown
<http://purl.jp/bio/12/glyco/glycan#anomer_unknown> rdf:type <http://purl.jp/bio/12/glyco/glycan#anomer> ,
:NamedIndividual ;
rdfs:label "unknown"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#arabino
<http://purl.jp/bio/12/glyco/glycan#arabino> rdf:type <http://purl.jp/bio/12/glyco/glycan#relative_configuration> ,
:NamedIndividual ;
rdfs:label "arabino"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#arginine
<http://purl.jp/bio/12/glyco/glycan#arginine> rdf:type <http://purl.jp/bio/12/glyco/glycan#amino_acid> ,
:NamedIndividual ;
rdfs:label "arginine"^^xsd:string ;
<http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration> <http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus> .
### http://purl.jp/bio/12/glyco/glycan#asparagine
<http://purl.jp/bio/12/glyco/glycan#asparagine> rdf:type <http://purl.jp/bio/12/glyco/glycan#amino_acid> ,
:NamedIndividual ;
rdfs:label "asparagine"^^xsd:string ;
<http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration> <http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus> .
### http://purl.jp/bio/12/glyco/glycan#aspartic_acid
<http://purl.jp/bio/12/glyco/glycan#aspartic_acid> rdf:type <http://purl.jp/bio/12/glyco/glycan#amino_acid> ,
:NamedIndividual ;
rdfs:label "aspartic acid"^^xsd:string ;
<http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration> <http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus> .
### http://purl.jp/bio/12/glyco/glycan#beta_elimination
<http://purl.jp/bio/12/glyco/glycan#beta_elimination> rdf:type <http://purl.jp/bio/12/glyco/glycan#chemical_release> ,
:NamedIndividual ;
rdfs:label "beta elimination"^^xsd:string ;
rdfs:comment "Beta elimination that released glycan from glycoconjugate."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_carbbank
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_carbbank> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "carbbank"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_csdb
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_csdb> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "csdb"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glycoct
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glycoct> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "glycoct"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glyde2
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glyde2> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "glyde2"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_condensed
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_condensed> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "iupac condensed"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_extended
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_extended> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "iupac extended"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_short
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_short> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "iupac short"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_kcf
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_kcf> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "kcf"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linearcode
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linearcode> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "linearcode"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linucs
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linucs> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "linucs"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_wurcs
<http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_wurcs> rdf:type <http://purl.jp/bio/12/glyco/glycan#carbohydrate_format> ,
:NamedIndividual ;
rdfs:label "wurcs"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#configuration_x
<http://purl.jp/bio/12/glyco/glycan#configuration_x> rdf:type <http://purl.jp/bio/12/glyco/glycan#configuration> ,
:NamedIndividual ;
rdfs:label "x"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_acid
<http://purl.jp/bio/12/glyco/glycan#core_modification_type_acid> rdf:type <http://purl.jp/bio/12/glyco/glycan#core_modification_type> ,
:NamedIndividual ;
rdfs:label "acid"^^xsd:string ;
rdfs:comment "Carboxyl (COOH) group."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_aldi
<http://purl.jp/bio/12/glyco/glycan#core_modification_type_aldi> rdf:type <http://purl.jp/bio/12/glyco/glycan#core_modification_type> ,
:NamedIndividual ;
rdfs:label "aldi"^^xsd:string ;
rdfs:comment "Alditol: Reduction of the aldehyde group to CH2OH."^^xsd:string .