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@prefix : <http://purl.jp/bio/12/glyco/glycan#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix psi: <http://purl.obolibrary.org/obo/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix bibo: <http://purl.org/ontology/bibo/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix uniprot: <http://www.uniprot.org/core/> .
@base <http://purl.jp/bio/12/glyco/glycan> .
<http://purl.jp/bio/12/glyco/glycan> rdf:type owl:Ontology ;
dc:creator "Daisuke Shinmachi"^^xsd:string ,
"Rene Ranzinger"^^xsd:string ,
"Shujiro Okuda"^^xsd:string ,
"Kiyoko Aoki-Kinoshita"^^xsd:string ;
owl:versionInfo "1.2.1"^^xsd:string ;
dc:creator "Issaku Yamada"^^xsd:string ;
dc:date "2013-02-10 23:11:00"^^xsd:dateTime ;
dc:creator "Shin Kawano"^^xsd:string ,
"Philip Toukach"^^xsd:string ,
"Matthew Campbell"^^xsd:string ,
"Hiro Sawaki"^^xsd:string ,
"Masaaki Matsubara"^^xsd:string .
#################################################################
# Annotation properties
#################################################################
### http://xmlns.com/foaf/0.1/name
<http://xmlns.com/foaf/0.1/name> rdf:type owl:AnnotationProperty .
#################################################################
# Object Properties
#################################################################
### http://purl.jp/bio/12/glyco/glycan#captured_by
:captured_by rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_binding ;
rdfs:range :glycan_binder ;
rdfs:comment "Object is compounds that have affinity to glycan or glycoconjugate."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#catalyzed_by
:catalyzed_by rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :glycoconjugate
:saccharide
)
] ;
rdfs:range :reaction ;
rdfs:comment "Object is a reaction process."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#contained_in
:contained_in rdf:type owl:ObjectProperty ;
owl:inverseOf :has_motif ;
rdfs:domain :glycan_motif ;
rdfs:range :saccharide ;
rdfs:comment "The subject is a structurally defined motif, and the object is a glycan structure or motif."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#degraded_by
:degraded_by rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :catalyzed_by ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :glycoconjugate
:saccharide
)
] ;
rdfs:range :glycosyl_hydrolase_reaction ;
rdfs:comment "Object is a reaction process, which degrades the subject."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#from_sample
:from_sample rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :referenced_compound ;
rdfs:range :source ;
rdfs:comment "A brief descripition of the sample analysed. This may be required if taxon, tissue, and disease are not sufficient. An example may include analysis of a sample with no specified background e.g. commerical project."^^xsd:string ;
rdfs:label "from_sample"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosylates
:glycosylates rdf:type owl:ObjectProperty ;
rdfs:domain :Saccharide ;
rdfs:range :Glycosylation_site ;
rdfs:label "glycosylates"@en .
### http://purl.jp/bio/12/glyco/glycan#has_absolute_configuration
:has_absolute_configuration rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :configuration ;
rdfs:range :absolute_configuration ;
rdfs:comment "Subject is a monosaccharide basetype. The object values for the predicate can be D, L or unknown."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_adduct
:has_adduct rdf:type owl:ObjectProperty ;
rdfs:domain :ms_annotation ;
rdfs:range :adduct .
### http://purl.jp/bio/12/glyco/glycan#has_affinity_to
:has_affinity_to rdf:type owl:ObjectProperty ;
rdfs:domain :saccharide ;
rdfs:range :glycan_binder ;
rdfs:comment "Subject is a glycan or glycoconjugate, which non-covalently binds to the object, usually :glycan_binder."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_aglycon
:has_aglycon rdf:type owl:ObjectProperty ;
rdfs:domain :glycoconjugate ;
rdfs:range :aglycon ;
rdfs:comment "This property is used to specify the aglycon portion of a glycoconjugate compound."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_alias
:has_alias rdf:type owl:ObjectProperty ,
owl:TransitiveProperty ;
rdfs:domain :monosaccharide ;
rdfs:range :monosaccharide_alias ;
rdfs:comment "reference to aliases for the monosaccharide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_alternative_name
:has_alternative_name rdf:type owl:ObjectProperty ,
owl:SymmetricProperty ;
rdfs:domain :referenced_compound ;
rdfs:range :saccharide ;
rdfs:comment "Name of compound. Use if name is not with compliant with Oxford Shorthand format, IUPAC, GlycoCT/WURCS, or Motif/Epitope."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_amino_acid_type
:has_amino_acid_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :glycosylated_AA ;
rdfs:range :amino_acid .
### http://purl.jp/bio/12/glyco/glycan#has_anomer
:has_anomer rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range :anomer ;
rdfs:comment "Anomeric state of the basetype."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_association
:has_association rdf:type owl:ObjectProperty ;
rdfs:domain :Referenced_compound ;
rdfs:label "has association"@en .
### http://purl.jp/bio/12/glyco/glycan#has_attached_glycan
:has_attached_glycan rdf:type owl:ObjectProperty ;
rdfs:domain :glycoconjugate ;
rdfs:range :saccharide ;
rdfs:comment "This property is used to specify a glycan portion of a glycoconjugate compound."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_basetype
:has_basetype rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide ;
rdfs:range :basetype ;
rdfs:comment "Object is the basetype of the monosaccharide (subject)."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_category
:has_category rdf:type owl:ObjectProperty ;
rdfs:domain :glycan_database ;
rdfs:range :glycan_database_category ;
rdfs:comment "category of a glycan database"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ce_electrogram
:has_ce_electrogram rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :evidence_ce ;
rdfs:range :CE_Electrogram ;
rdfs:comment "Glycan annotation with associated CE electrogram evidence"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ce_peak
:has_ce_peak rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :CE_Digest_Electrogram ,
:CE_Electrogram ;
rdfs:range :CE_Property ;
rdfs:comment "Peak description"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_code
:has_code rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :saccharide ;
rdfs:comment "Code for compound. This may be linked with a commerically available compound and its catalogue number or in-house available compound e.g. synthesied standard."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_component
:has_component rdf:type owl:ObjectProperty ;
rdfs:domain :saccharide ;
rdfs:range :component ;
rdfs:comment "Object is a component, representing the monosaccharide composition of the subject."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_compound
:has_compound rdf:type owl:ObjectProperty ;
rdfs:domain :Referenced_compound ;
rdfs:range :compound ;
rdfs:label "has_compound"@en .
### http://purl.jp/bio/12/glyco/glycan#has_configuration
:has_configuration rdf:type owl:ObjectProperty ;
rdfs:domain :basetype ;
rdfs:range :configuration ;
rdfs:comment "Instance of class is configuration." ;
rdfs:label "configuration"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_core_modification
:has_core_modification rdf:type owl:ObjectProperty ;
rdfs:domain :basetype ;
rdfs:range :core_modification ;
rdfs:comment "reference to another RDF describing a core modification that is present in this basetype"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_core_modification_type
:has_core_modification_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :core_modification ;
rdfs:range :core_modification_type ;
rdfs:comment "Type of the core modification. Instances of class are core modification types."^^xsd:string ;
rdfs:label "has_core_modification_type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type
:has_default_linkage_type rdf:type owl:ObjectProperty ;
rdfs:domain :substituent_type ;
rdfs:range :linkage_type ;
rdfs:comment "Instances of this class are linkage type ." .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_type2
:has_default_linkage_type2 rdf:type owl:ObjectProperty ;
rdfs:domain :substituent_type ;
rdfs:range :linkage_type ;
rdfs:comment "Instances of this class are second linkage type." .
### http://purl.jp/bio/12/glyco/glycan#has_destination_organism
:has_destination_organism rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :source_modeled
:source_synthetic
)
] ;
rdfs:range :source_natural ;
rdfs:comment "glycan of which organism authors wanted to synthesize or model"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_enzyme
:has_enzyme rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :lc_digest_chromatogram
:reaction
)
] ;
rdfs:range :enzyme ;
rdfs:comment "Object is an enzyme, which performs the reaction."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_epitope
:has_epitope rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :has_motif ;
rdfs:domain :saccharide ;
rdfs:range :glycan_epitope ;
rdfs:comment "The object is a structural motif with biological relevance; subproperty of has_motif."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_evidence
:has_evidence rdf:type owl:ObjectProperty ;
rdfs:domain :referenced_compound ;
rdfs:range :evidence ;
rdfs:comment "evidence for a given set of information (glycan, publication). An evidence can be any type of experimental data."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_chromatogram
:has_exoglycosidase_chromatogram rdf:type owl:ObjectProperty ;
rdfs:domain :lc_chromatogram ;
rdfs:range :lc_digest_chromatogram ;
rdfs:comment "Relation to exoglycosidase treated sample"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_electrogram
:has_exoglycosidase_electrogram rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :CE_Digest_Electrogram ,
:referenced_compound ;
rdfs:range :referenced_compound .
### http://purl.jp/bio/12/glyco/glycan#has_exoglycosidase_treatment
:has_exoglycosidase_treatment rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :lc_digest_chromatogram ;
rdfs:range :reaction .
### http://purl.jp/bio/12/glyco/glycan#has_external_substituent
:has_external_substituent rdf:type owl:ObjectProperty ;
rdfs:domain :monosaccharide_alias ;
rdfs:range :substituent ;
rdfs:comment "Reference to a :substituent."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_first_configuration
:has_first_configuration rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range :configuration ;
rdfs:comment "Reference to another RDF resource with URI describing the first monosaccharide configuration"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_fragment_type
:has_fragment_type rdf:type owl:ObjectProperty ;
rdfs:domain :ms_annotation ;
rdfs:range :ms_fragment_type .
### http://purl.jp/bio/12/glyco/glycan#has_fragmented_spectrum
:has_fragmented_spectrum rdf:type owl:ObjectProperty ;
rdfs:domain :mass_spectrum ;
rdfs:range :msn_spectrum .
### http://purl.jp/bio/12/glyco/glycan#has_glycan
:has_glycan rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :has_compound ;
rdf:type owl:FunctionalProperty ;
rdfs:domain :referenced_compound ;
rdfs:range :saccharide ;
rdfs:comment "The glycan object referenced by this subject."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_glycoconjugate_sequence
:has_glycoconjugate_sequence rdf:type owl:ObjectProperty ;
rdfs:domain :motif ,
:saccharide ;
rdfs:range :glycoconjugate_sequence ;
rdfs:comment "Sequence information to object of rdf:type :glycoconjugate_sequence if the subject is part of a glycoconjugate."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_glycosequence
:has_glycosequence rdf:type owl:ObjectProperty ;
rdfs:domain :motif ,
:saccharide ;
rdfs:range :glycosequence ;
rdfs:comment "glycan sequence information to object of rdf:type :glycosequence representing the subject in a text format."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_glycosylated_AA
:has_glycosylated_AA rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :glycopeptide
:glycoprotein
)
] ;
rdfs:range :glycosylated_AA ;
rdfs:comment "This property is used to specify a glycosylated amino acid residue in an object glycoprotein or glycopeptide. "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_image
:has_image rdf:type owl:ObjectProperty ;
rdfs:domain :saccharide ;
rdfs:range :image ;
rdfs:comment "Object is a URI to an image instance describing a graphical representation of the glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ion
:has_ion rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :adduct ;
rdfs:range :adduct_ion .
### http://purl.jp/bio/12/glyco/glycan#has_ionisation_type
:has_ionisation_type rdf:type owl:ObjectProperty ;
rdfs:domain :mass_spectrometry_device ;
rdfs:range psi:MS_1000008 .
### http://purl.jp/bio/12/glyco/glycan#has_lc_annotation
:has_lc_annotation rdf:type owl:ObjectProperty ;
rdfs:domain :lc_peak ;
rdfs:range :compound .
### http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram
:has_lc_chromatogram rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_lc
:evidence_lc_ms
)
] ;
rdfs:range :lc_chromatogram .
### http://purl.jp/bio/12/glyco/glycan#has_lc_chromatogram_peak
:has_lc_chromatogram_peak rdf:type owl:ObjectProperty ;
rdfs:domain :lc_chromatogram ;
rdfs:range :lc_peak ;
rdfs:comment "Peak description"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_linkage_type
:has_linkage_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :substituent_linkage ;
rdfs:range :linkage_type ;
rdfs:comment "GlycoCT linkage type of the monosaccharide to the substituent"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_mass_analyzer
:has_mass_analyzer rdf:type owl:ObjectProperty ;
rdfs:domain :mass_spectrometry_device ;
rdfs:range psi:MS_1000443 .
### http://purl.jp/bio/12/glyco/glycan#has_mass_spectrometry_peak
:has_mass_spectrometry_peak rdf:type owl:ObjectProperty ;
rdfs:domain :mass_spectrum ;
rdfs:range :ms_peak .
### http://purl.jp/bio/12/glyco/glycan#has_mass_spectrum
:has_mass_spectrum rdf:type owl:ObjectProperty ;
rdfs:domain :evidence_ms ;
rdfs:range :mass_spectrum .
### http://purl.jp/bio/12/glyco/glycan#has_monosaccharide
:has_monosaccharide rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :component ;
rdfs:range :monosaccharide ;
rdfs:comment "URI to a RDF resource describing the monosaccharide (usually MonosaccharideDB)." .
### http://purl.jp/bio/12/glyco/glycan#has_monosaccharide_notation_scheme
:has_monosaccharide_notation_scheme rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide_alias ;
rdfs:range :monosaccharide_notation_scheme ;
rdfs:comment "One of GLYCOSCIENCES, GLYCOCT, IUPAC, CARBBANK, CFG, BCSDB, PDB, or GLYCAM, see http://www.monosaccharidedb.org/notation.action?topic=schemes"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_motif
:has_motif rdf:type owl:ObjectProperty ;
rdfs:domain :saccharide ;
rdfs:range :glycan_motif ;
rdfs:comment "The object is a structurally defined motif E.g. for Neo-lacto motif http://jcggdb.jp/idb/motif?id=JCGG-MOTIF3009.rdf inverse of ”contained_in”. should have sequence, composition, image ..."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ms_annotation
:has_ms_annotation rdf:type owl:ObjectProperty ;
rdfs:domain :ms_peak ;
rdfs:range :ms_annotation .
### http://purl.jp/bio/12/glyco/glycan#has_ms_model
:has_ms_model rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :mass_spectrometry_device ;
rdfs:range psi:MS_1000031 .
### http://purl.jp/bio/12/glyco/glycan#has_neutral_loss
:has_neutral_loss rdf:type owl:ObjectProperty ;
rdfs:domain :ms_annotation ;
rdfs:range :neutral_loss .
### http://purl.jp/bio/12/glyco/glycan#has_peptide
:has_peptide rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_IGOT ;
rdfs:range :glycopeptide .
### http://purl.jp/bio/12/glyco/glycan#has_polymerization_degree
:has_polymerization_degree rdf:type owl:ObjectProperty ;
rdfs:domain :polysaccharide ;
rdfs:range :polymerization_degree ;
rdfs:comment "Used only if the specified glycan structure (subject) itself is the oligomeric part forming a repeating unit. Repeating unit information to object of rdf:type :repeat_count."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_precursor_peak
:has_precursor_peak rdf:type owl:ObjectProperty ;
rdfs:domain :evidence_ms ;
rdfs:range :ms_peak ;
rdfs:comment "URI of the precursor peak of a MS^n spectra."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_product
:has_product rdf:type owl:ObjectProperty ;
rdfs:domain :reaction ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( :glycoconjugate
:saccharide
)
] ;
rdfs:comment "Object is generated by the reaction."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_protein_name
:has_protein_name rdf:type owl:ObjectProperty ;
rdfs:domain uniprot:Protein ;
rdfs:comment "Protein name in accordance with UniProt accession with information available."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_reference
:has_reference rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :citation
:compound
:evidence
:source
)
] ;
rdfs:range :referenced_compound ;
rdfs:comment "Reference between :compound, :citation, :evidence, :source and :referenced_compound."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_relative_configuration
:has_relative_configuration rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :configuration ;
rdfs:range :relative_configuration ;
rdfs:comment "IUPAC monosaccharide basetype information. Without absolute configuration D or L"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_repeat_attribute
:has_repeat_attribute rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :polymerization_degree ;
rdfs:range :repeat_attribute ;
rdfs:comment "(min, max, exact, average, unknown) part of repeating unit"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_residue
:has_residue rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :subspectrum ;
rdfs:range :monosaccharide ;
rdfs:comment "Monosaccharide annotation of the subspectrum."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_resource_entry
:has_resource_entry rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :compound
:referenced_compound
)
] ;
rdfs:range :resource_entry ;
rdfs:comment "Assigns a resource entry to a compound."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ring_type
:has_ring_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range :ring_type ;
rdfs:comment "Assigns the ring type to a basetype."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_sample_type
:has_sample_type rdf:type owl:ObjectProperty ;
rdfs:domain :source_natural ;
rdfs:range :source_sample ;
rdfs:comment "Sample type of the source."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_second_configuration
:has_second_configuration rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range :configuration ;
rdfs:comment "Reference to another RDF resource with URI describing the second monosaccharide configuration in case there are more than four stereocenters"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_signal
:has_signal rdf:type owl:ObjectProperty ;
rdfs:domain :subspectrum ;
rdfs:range :signal ;
rdfs:comment "Resource to a :signal"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_subspectrum
:has_subspectrum rdf:type owl:ObjectProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range :subspectrum .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage
:has_substituent_linkage rdf:type owl:ObjectProperty ;
rdfs:domain :substituent ;
rdfs:range :substituent_linkage ;
rdfs:comment "linkage of the substituent"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_type
:has_substituent_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :substituent ;
rdfs:range :substituent_type ;
rdfs:comment "linkage type of the substituent"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substitution
:has_substitution rdf:type owl:ObjectProperty ;
rdfs:domain :monosaccharide ;
rdfs:range :substituent ;
rdfs:comment "The substituent is linked to the basetype in this monosaccharide."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substrate
:has_substrate rdf:type owl:ObjectProperty ;
rdfs:domain :reaction ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( :glycoconjugate
:saccharide
)
] ;
rdfs:comment "Object is consumed by the reaction."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_symbol_format
:has_symbol_format rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :image ;
rdfs:range :symbol_format ;
rdfs:comment "URL to explanation of symbol? The display style of the glycan. (cfg, uoxf, atoms)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_synthesis_type
:has_synthesis_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_synthetic ;
rdfs:range :synthetic_type ;
rdfs:comment "Allows to specify the synthesis type used to generated the glycan."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_taxon
:has_taxon rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:comment "Species information of the source."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_third_configuration
:has_third_configuration rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range :configuration ;
rdfs:comment "Reference to another RDF resource with URI describing the third monosaccharide configuration in case there are more than eight stereocenters"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_unassigned_signal
:has_unassigned_signal rdf:type owl:ObjectProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range :signal ;
rdfs:comment "Link to an unassigned signal which is just a chemical shift."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_uniprot_accession
:has_uniprot_accession rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ,
owl:InverseFunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :glycopeptide
:glycoprotein
:protein
)
] ;
rdfs:range uniprot:Protein ;
rdfs:comment "When the subject of this predicate is :glycoprotein, the range instance is equivalent to proteineous part of the subject glycoprotein."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_uoxf
:has_uoxf rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :saccharide ;
rdfs:comment "Glycan sequence in a text format."^^xsd:string ;
rdfs:label "has_uoxf"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#hosted_by
:hosted_by rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:range :source_natural ;
rdfs:comment "Reference to another biological source representing the host organism."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#hybrid_with
:hybrid_with rdf:type owl:ObjectProperty ,
owl:SymmetricProperty ;
rdfs:domain :source_natural ;
rdfs:range :source_natural ;
rdfs:comment "An offspring of two different taxons."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#in_carbohydrate_format
:in_carbohydrate_format rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :sequence ;
rdfs:range :carbohydrate_format ;
rdfs:comment "carbohydrate sequence format of the sequence given in the glycosequence instance"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#in_glycan_database
:in_glycan_database rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :resource_entry ;
rdfs:range :glycan_database ;
rdfs:comment "Glycan is present in the glycan database specified by the URI."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_from_profile
:is_from_profile rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :evidence ,
:referenced_compound ;
rdfs:range :referenced_compound ;
rdfs:comment "A profile can have many peaks and saccharides. It represents a single LC run (parent or digest)."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_from_report
:is_from_report rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
rdfs:domain :referenced_compound ;
rdfs:range :referenced_compound ;
rdfs:comment "Reference to a report (internal, contract, method development or similar) with no associated publication."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_from_source
:is_from_source rdf:type owl:ObjectProperty ;
rdfs:domain :referenced_compound ;
rdfs:range :source ;
rdfs:comment "Source annotation for a referenced compound."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_glycosylated_on
:is_glycosylated_on rdf:type owl:ObjectProperty ;
rdfs:domain :glycoconjugate ;
rdfs:range :Glycosylation_site ;
rdfs:label "is glycosylated on"@en .
### http://purl.jp/bio/12/glyco/glycan#modification_type
:modification_type rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :glycosylated_AA ;
rdfs:range uniprot:Glycosylation_Annotation ;
rdfs:comment "Modification type is represented due to biological process, typically N-linked or O-linked."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#published_in
:published_in rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence
:referenced_compound
)
] ;
rdfs:range :citation ;
rdfs:comment "Reference information for the subject."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#synthesized_by
:synthesized_by rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf :catalyzed_by ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :glycoconjugate
:saccharide
)
] ;
rdfs:range :glycosyltransferase_reaction ;
rdfs:comment "Object is a reaction process, which synthesizes the subject."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_buffer
:used_buffer rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_nmr
:reaction
)
] ;
rdfs:range :buffer ;
rdfs:comment "Link to buffer information, such as http://en.wikipedia.org/wiki/Phosphate_buffered_saline."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_column
:used_column rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_lc_ms ;
rdfs:range :lc_column .
### http://purl.jp/bio/12/glyco/glycan#used_lc_gradient
:used_lc_gradient rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_lc
:evidence_lc_ms
)
] ;
rdfs:range :gradient ;
rdfs:comment "Solvent gradient explained by change in composition with respect to time."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_molecule
:used_molecule rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_lc
:evidence_lc_ms
)
] ;
rdfs:range :compound .
### http://purl.jp/bio/12/glyco/glycan#used_ms
:used_ms rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_ms ;
rdfs:range :mass_spectrometry_device .
### http://purl.jp/bio/12/glyco/glycan#used_reference_standard
:used_reference_standard rdf:type owl:ObjectProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range :compound ;
rdfs:comment "reference_standard is the accepted internal/external standard for calibrating chemical shift for NMR spectroscopy."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_software
:used_software rdf:type owl:ObjectProperty ;
rdfs:domain :source_modeled ;
rdfs:range :software ;
rdfs:comment "Software used to model the molecule."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_solvent
:used_solvent rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain :solvent_part ;
rdfs:range :solvent ;
rdfs:comment "The predicate links the solvent part with the actually solvent (such as https://www.ebi.ac.uk/chebi/searchId.do?chebiId=41981). Object is an instance of glycan:solvent."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_solvent_part
:used_solvent_part rdf:type owl:ObjectProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range :solvent_part .
#################################################################
# Data properties
#################################################################
### http://purl.jp/bio/12/glyco/glycan#elucidated
:elucidated rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :referenced_compound ;
rdfs:range xsd:boolean ;
rdfs:comment "if this glycan was elucidated (rather than just studied) in this publication"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_AA_sequence
:has_AA_sequence rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :glycopeptide
:glycoprotein
:peptide
:protein
)
] ;
rdfs:range xsd:string ;
rdfs:comment "Amino acid sequence is represented in the standard IUPAC-IUB amino acid code. Even if any modification are known, any modified amino acid residues are represented with a single letter of a nascent residue."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_abbreviation
:has_abbreviation rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :glycan_database ;
rdfs:range xsd:string ;
rdfs:comment "Abbreviation of the database"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_affinity_value
:has_affinity_value rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_binding ;
rdfs:range xsd:double ;
rdfs:comment "Binding affinity value for the lectin or antibody."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_alias_name
:has_alias_name rdf:type owl:DatatypeProperty ;
rdfs:domain :monosaccharide_alias ;
rdfs:range xsd:string ;
rdfs:comment "Alias name of a monosaccharide."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_arabinose_unit
:has_arabinose_unit rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain :evidence_ce ,
:evidence_lc ,
:lc_peak ;
rdfs:range xsd:double ;
rdfs:comment "Structure has an arabinose unit"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_average_molecular_weight
:has_average_molecular_weight rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide ;
rdfs:range xsd:double ;
rdfs:comment "literal numeric with decimal, calculated from monosaccharide composition with average atomic weight"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_basetype_id
:has_basetype_id rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range xsd:integer ;
rdfs:comment "Id of the basetype in MonosaccharideDB."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_basetype_linkage_position
:has_basetype_linkage_position rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :substituent_linkage ;
rdfs:range xsd:integer ;
rdfs:comment "Linkage position at the basetype."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_cardinality
:has_cardinality rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :component ;
rdfs:range xsd:integer ;
rdfs:comment "Number of occurrences of an element (e.g. a monosaccharide) in the subject. This information can be missing in case the cardinality cannot be defined (e.g. repeat units with unknown or under-defined repeats). Missing for non-stoichiometrical residues."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_cardinality_per_repeat
:has_cardinality_per_repeat rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :component ;
rdfs:range xsd:integer ;
rdfs:comment "Number of occurrences of an element (e.g. a monosaccharide) in the repeat unit. Applicable to :repeatUnits only. Missing for non-stoichiometrical residues."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_cell_line
:has_cell_line rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
rdfs:comment "Cell line information of the source"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_cell_type
:has_cell_type rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
rdfs:comment "Cell type information of the source"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_charge
:has_charge rdf:type owl:DatatypeProperty ;
rdfs:domain :ms_peak ;
rdfs:range xsd:integer ;
rdfs:comment "Charge state of the MS peak"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_formula
:has_chemical_formula rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :neutral_loss ;
rdfs:range xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_shift
:has_chemical_shift rdf:type owl:DatatypeProperty ;
rdfs:domain :signal ;
rdfs:range xsd:double ;
rdfs:comment "chemical shift (may be multiple e.g. for CH2 groups in 1H spectra. May be missing if unknown)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_max
:has_chemical_shift_max rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :has_chemical_shift ;
rdf:type owl:FunctionalProperty ;
rdfs:domain :signal ;
rdfs:range xsd:double ;
owl:propertyDisjointWith :has_chemical_shift_min ;
rdfs:comment "Maximum value of chemical shift."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_chemical_shift_min
:has_chemical_shift_min rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf :has_chemical_shift ;
rdf:type owl:FunctionalProperty ;
rdfs:domain :signal ;
rdfs:range xsd:double ;
rdfs:comment "Minimum value of chemical shift."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_count
:has_count rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :adduct
:neutral_loss
)
] ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_coupling_constant
:has_coupling_constant rdf:type owl:DatatypeProperty ;
rdfs:domain :signal ;
rdfs:range xsd:double ;
rdfs:comment "values in Hz"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder
:has_default_linkage_bondorder rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent_type ;
rdfs:range xsd:float ;
rdfs:comment "Object is bond order that is number of linkage in default."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_default_linkage_bondorder2
:has_default_linkage_bondorder2 rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent_type ;
rdfs:range xsd:float ;
rdfs:comment "Object is second bond order that is number of linkage in default."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_default_linking_position
:has_default_linking_position rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent_type ;
rdfs:range xsd:integer ;
rdfs:comment "A position that is number of linkage in default."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_default_linking_position2
:has_default_linking_position2 rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent_type ;
rdfs:range xsd:integer ;
rdfs:comment "A position that is number of second linkage in default."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_diameter
:has_diameter rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :lc_column ;
rdfs:range xsd:double ;
rdfs:comment "diameter of the column in micro meter"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_disease
:has_disease rdf:type owl:DatatypeProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
rdfs:comment "MESH reference for disease"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_extended_stereocode
:has_extended_stereocode rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range xsd:string ;
rdfs:comment "Extended stereocode of the basetype"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_fluid
:has_fluid rdf:type owl:DatatypeProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
owl:propertyDisjointWith :has_tissue ;
rdfs:comment "either tissue or fluid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_fragment
:has_fragment rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :ms_annotation ;
rdfs:range xsd:string ;
rdfs:comment " sequence as peak annotation"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_glucose_unit
:has_glucose_unit rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain :evidence_ce ,
:evidence_lc ,
:lc_peak ;
rdfs:range xsd:double ;
rdfs:comment "Structure has an glucose unit"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_intensity
:has_intensity rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :ms_peak ;
rdfs:range xsd:double ;
rdfs:comment "intensity value of the MS peak"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_keyword
:has_keyword rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range xsd:anyURI ;
rdfs:comment "Keyword for the publication. Object is a URI in MeSH."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_length
:has_length rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :lc_column ;
rdfs:range xsd:double ;
rdfs:comment "Length of the column in milli meter"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_life_stage
:has_life_stage rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
rdfs:comment "Life stage information of the source."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_linkage_path
:has_linkage_path rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :subspectrum ;
rdfs:range xsd:string ;
rdfs:comment "path from the reducing end or from the rightmost residue in repeat"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_linkage_position
:has_linkage_position rdf:type owl:DatatypeProperty ;
rdfs:domain :monosaccharide ;
rdfs:range xsd:integer ;
rdfs:comment "Monosaccharide can be linked to other residues via standard glycosidic linkage at the given backbone position."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_manufacturer
:has_manufacturer rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence ;
rdfs:range xsd:string ;
rdfs:comment "Manufacturer of the device used in the experiment."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_material
:has_material rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :lc_column ;
rdfs:range xsd:string ;
rdfs:comment "Column packing material "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_method
:has_method rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range xsd:anyURI ;
rdfs:comment "experimental procedures described in the article"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_missing_signals_max
:has_missing_signals_max rdf:type owl:DatatypeProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_missing_signals_min
:has_missing_signals_min rdf:type owl:DatatypeProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_model
:has_model rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence ;
rdfs:range xsd:string ;
rdfs:comment "Model of the device used in the experiment."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_modification_position
:has_modification_position rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :core_modification ;
rdfs:range xsd:integer ;
rdfs:comment "Position of the modification at the monosaccharide."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_modification_position2
:has_modification_position2 rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :core_modification ;
rdfs:range xsd:integer ;
rdfs:comment "Second position of the modification at the monosaccharide (eg. for double bounds)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_monoisotopic_molecular_weight
:has_monoisotopic_molecular_weight rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide ;
rdfs:range xsd:double ;
rdfs:comment "Literal numeric with decimal, calculated from monosaccharide composition with atomic weight of monoisotope."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ms_level
:has_ms_level rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :mass_spectrum ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_msdb_id
:has_msdb_id rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide ;
rdfs:range xsd:integer ;
rdfs:comment "Id of the monosaccharide in MonosaccharideDB."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_multiplicity
:has_multiplicity rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :signal ;
rdfs:range xsd:string ;
rdfs:comment "single-character literal (S,M,D,T ,Q) or combination"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_mz
:has_mz rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :ms_peak ;
rdfs:range xsd:double ;
rdfs:comment "MZ value of the MS peak"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_nucleus
:has_nucleus rdf:type owl:DatatypeProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:string ;
rdfs:comment "Nucleus"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_organ
:has_organ rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
rdfs:comment "Organ of the source."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_particle_size
:has_particle_size rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :lc_column ;
rdfs:range xsd:double ;
rdfs:comment "Size of the particle in micro meter."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_peak_area
:has_peak_area rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :lc_peak ;
rdfs:range xsd:double ;
rdfs:comment "Integrated peak area."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_phase_description
:has_phase_description rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
rdfs:domain :evidence_lc ,
:lc_column ;
rdfs:range xsd:string ;
rdfs:comment "Description / short hand of the phase e.g. HILIC, PGC"^^xsd:string ;
rdfs:label "has_phase_description"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_pmid
:has_pmid rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range xsd:integer .
### http://purl.jp/bio/12/glyco/glycan#has_repeat_count
:has_repeat_count rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :polymerization_degree ;
rdfs:range xsd:positiveInteger ;
rdfs:comment "value of repeat_attribute in resource, if known"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_retention_time
:has_retention_time rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :lc_peak
:msn_spectrum
)
] ;
rdfs:range xsd:double ;
rdfs:comment "Retention time of the molecule in the experiment in minutes."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ring_end
:has_ring_end rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range xsd:integer ;
rdfs:comment "position of last carbon involved in ring closure"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_ring_start
:has_ring_start rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range xsd:integer ;
rdfs:comment "position of first carbon involved in ring closure"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_sequence
:has_sequence rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :sequence ;
rdfs:range xsd:string ;
rdfs:comment "Sequence of the Glycan"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_size
:has_size rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range xsd:integer ;
rdfs:comment "number of backbone carbon atoms"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_stereocode
:has_stereocode rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :basetype ;
rdfs:range xsd:string ;
rdfs:comment "Stereocode describing the backbone stereochemistry"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_strain
:has_strain rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:comment "Object is bacterial strain."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_structure_location
:has_structure_location rdf:type owl:DatatypeProperty ;
rdfs:domain :referenced_compound ;
rdfs:range xsd:string ;
rdfs:comment "The location of the referenced compound in a publication (e.g. Figure 1)."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position
:has_substituent_linkage_position rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :substituent_linkage ;
rdfs:range xsd:integer ;
rdfs:comment "Linkage position at the substituent."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substituent_linkage_position2
:has_substituent_linkage_position2 rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :substituent_linkage ;
rdfs:range xsd:integer ;
rdfs:comment "Second linkage position at the substituent."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_substitution_name
:has_substitution_name rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent ;
rdfs:range xsd:string ;
rdfs:comment "Name of substitution."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_tissue
:has_tissue rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :source_natural ;
rdfs:range xsd:anyURI ;
rdfs:comment "either tissue or fluid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_url_template
:has_url_template rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :glycan_database ;
rdfs:range xsd:string ;
rdfs:comment "xsd:string such as http://foo.bar.com/someglycan?id=%s"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_valence
:has_valence rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent ;
rdfs:range xsd:integer ;
rdfs:comment "Object is a valence of substituent."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#has_version
:has_version rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :software ;
rdfs:range xsd:string ;
rdfs:comment "Version of the software used"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#injection_volume
:injection_volume rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_lc
:evidence_lc_ms
)
] ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#is_ambiguous
:is_ambiguous rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :saccharide ;
rdfs:range xsd:boolean ;
rdfs:comment "Boolean indicating whether the subject is a fully defined structure including all linkage information, or not."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_fragment
:is_fragment rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :source_modeled
:source_synthetic
)
] ;
rdfs:range xsd:boolean ;
rdfs:comment "If the synthesised or modeled molecule is just a fragment or the complete target molecule"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_fuzzy
:is_fuzzy rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent ;
rdfs:range xsd:boolean ;
rdfs:comment "If a substituent is fuzzy."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_linkable
:is_linkable rdf:type owl:DatatypeProperty ;
rdfs:domain :substituent ;
rdfs:range xsd:boolean ;
rdfs:comment "If a substituent is linkable."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_missing
:is_missing rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :signal ;
rdfs:range xsd:boolean ;
rdfs:comment "If true unassigned signal. NO if a signal can not exist, rather than its unknown."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_primary_name
:is_primary_name rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide_alias ;
rdfs:range xsd:boolean ;
rdfs:comment "indicates whether this is the name that should be used to uniquely identify this monosaccharide in the given :notation_scheme, or whether this is a secondary alias name (e.g. to indicate whether a trivial name or a systematic name is to be used preferentially in case a trivial name exists for this monosaccharide)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#is_trivial_name
:is_trivial_name rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :monosaccharide_alias ;
rdfs:range xsd:boolean ;
rdfs:comment "Indicates whether this is a trivial name that implies modifications, or a systematic name (e.g. KDO vs. D-3-deoxy-manOct2ulo-onic)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#of_carbon_number
:of_carbon_number rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :signal ;
rdfs:range xsd:integer ;
rdfs:comment "carbon atom number"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ratio
:ratio rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :solvent_part ;
rdfs:range xsd:double ;
rdfs:comment "Ratio of a solvent in a solvent mixture. (100 if there is only one solvent)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_amount_mg
:used_amount_mg rdf:type owl:DatatypeProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:double ;
rdfs:comment "sample weight."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_column_temperature
:used_column_temperature rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_lc
:evidence_lc_ms
)
] ;
rdfs:range xsd:double ;
rdfs:comment "Column temperature in C."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_concentration
:used_concentration rdf:type owl:DatatypeProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range rdfs:Literal ;
rdfs:comment "sample concentration."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_frequency
:used_frequency rdf:type owl:DatatypeProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:double ;
rdfs:comment "frequency of NMR spectrometer."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_lc_flow_rate
:used_lc_flow_rate rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( :evidence_lc
:evidence_lc_ms
)
] ;
rdfs:range xsd:string ;
rdfs:comment "Flow rate refers to the flow of mobile phase through the column and is measured in ml/min."^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_lc_run_time
:used_lc_run_time rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :gradient ;
rdfs:range xsd:string ;
rdfs:comment "Runtime of the LC "^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_percent_max
:used_percent_max rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :gradient ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_percent_min
:used_percent_min rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :gradient ;
rdfs:range xsd:double .
### http://purl.jp/bio/12/glyco/glycan#used_ph
:used_ph rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:double ;
rdfs:comment "pH of solution"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#used_temperature
:used_temperature rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :evidence_nmr ;
rdfs:range xsd:string ;
rdfs:comment "value or range in K (literal)"^^xsd:string .
### http://purl.org/dc/elements/1.1/publisher
dc:publisher rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :citation ;
rdfs:range xsd:string .
### http://purl.org/dc/elements/1.1/title
dc:title rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range xsd:string .
### http://purl.org/dc/terms/issued
dcterms:issued rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range xsd:integer ;
rdfs:comment "Publication year"^^xsd:string .
### http://purl.org/ontology/bibo/authorList
bibo:authorList rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range rdfs:Literal .
### http://purl.org/ontology/bibo/pageEnd
bibo:pageEnd rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :citation ;
rdfs:range xsd:string .
### http://purl.org/ontology/bibo/pageStart
bibo:pageStart rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :citation ;
rdfs:range xsd:string .
### http://purl.org/ontology/bibo/shortTitle
bibo:shortTitle rdf:type owl:DatatypeProperty ;
rdfs:domain :citation ;
rdfs:range xsd:string .
### http://purl.org/ontology/bibo/volume
bibo:volume rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain :citation ;
rdfs:range xsd:string .
#################################################################
# Classes
#################################################################
### http://purl.jp/bio/12/glyco/glycan#CE_Digest_Electrogram
:CE_Digest_Electrogram rdf:type owl:Class ;
rdfs:subClassOf :CE_Property ;
rdfs:label "CE Digest Electrogram"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#CE_Electrogram
:CE_Electrogram rdf:type owl:Class ;
rdfs:subClassOf :CE_Property ;
rdfs:label "CE Electrogram"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#CE_Property
:CE_Property rdf:type owl:Class ;
rdfs:subClassOf :CE_Property ;
rdfs:comment "Class that contains Capillary Electrophoresis properties."^^xsd:string ;
rdfs:label "CE Property"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#Citation
:Citation rdf:type owl:Class ;
owl:equivalentClass :citation ;
rdfs:comment """Initial class name is capitalized.
\"glycan:Citation\""""@en ;
rdfs:label "Citation"@en .
### http://purl.jp/bio/12/glyco/glycan#Evidence_GC
:Evidence_GC rdf:type owl:Class ;
rdfs:subClassOf :evidence_ms .
### http://purl.jp/bio/12/glyco/glycan#Evidence_HPAEC
:Evidence_HPAEC rdf:type owl:Class ;
rdfs:subClassOf :evidence .
### http://purl.jp/bio/12/glyco/glycan#Evidence_HPLC
:Evidence_HPLC rdf:type owl:Class ;
rdfs:subClassOf :evidence_lc ;
rdfs:comment "Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a HPLC instrument. Retention times are compared to a dextran ladder and represented as GU values."^^xsd:string ;
rdfs:label "Evidence HPLC"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#Evidence_RPUPLC
:Evidence_RPUPLC rdf:type owl:Class ;
rdfs:subClassOf :evidence_lc ;
rdfs:comment "Reverse Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites. Retention times are normally compared with an arabinose ladder and assigned arabinose units (AU)."^^xsd:string ;
rdfs:label "Evidence RPLC"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#Evidence_UPLC
:Evidence_UPLC rdf:type owl:Class ;
rdfs:subClassOf :evidence_lc ;
rdfs:comment "Normal Phase, a subclass of glycan:evidence_lc, is an experiment for the identification of released glycans based on retention properites run on a UPLC instrument. Retention times are compared to a dextran ladder and represented as GU values."^^xsd:string ;
rdfs:label "Evidence UPLC"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#Glycoprotein
:Glycoprotein rdf:type owl:Class ;
owl:equivalentClass :glycoprotein ;
rdfs:subClassOf :glycoconjugate ;
rdfs:label "Glycoprotein"@en ,
"""Initial class name is capitalized.
\"glycan:Glycoprotein"""@en .
### http://purl.jp/bio/12/glyco/glycan#Glycosidase_Treatment
:Glycosidase_Treatment rdf:type owl:Class ;
rdfs:subClassOf :sample_preparation .
### http://purl.jp/bio/12/glyco/glycan#Glycosylation_site
:Glycosylation_site rdf:type owl:Class ;
rdfs:subClassOf uniprot:Glycosylation_Annotation ;
rdfs:comment "A glycosylation site is an amino acid residue within a peptide that accepts oligosaccharide via amide linkage."@en ;
rdfs:label "Glycosylation Site"@en .
### http://purl.jp/bio/12/glyco/glycan#Label
:Label rdf:type owl:Class ;
rdfs:subClassOf :sample_preparation .
### http://purl.jp/bio/12/glyco/glycan#N-glycan
:N-glycan rdf:type owl:Class ;
rdfs:subClassOf :saccharide ;
rdfs:comment "A subclass of saccharide primarily found on eukaryotic glycoproteins. This class of glycan typically contains a specific glycan substructure motif (http://jcggdb.jp/idb/motif?id=JCGG-MOTIF1001), and the reducing terminal GlcNAc of the glycan is attached to the N-atom of an asparagine residue of the protein in a beta configuration. A class of glycoconjugate including dolichyl-diphospho esters also involves the same glycan motif, but they are attached in an alpha configuration. The dolichyl-diphosphooligosaccharides are precursors or intermediates in the protein N-glycosylation process, by which the specific dolichyl-diphosphooligosaccharide (http://jcggdb.jp/idb/jcggdb/JCGG-STR015745) is transferred from the dolichyl phospohate ester to an asparagine residue of the protein by an oligosacchayl transferase (GO:0004579)."^^xsd:string ;
rdfs:label "N-glycan"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#O-glycan
:O-glycan rdf:type owl:Class ;
rdfs:subClassOf :saccharide ;
rdfs:comment "A subclass of saccharide primarily found in glycoproteins This class is subdivided into a variety of subclasses due to its expression in a variety of biological sources. In terms of structure, O-glycans either consist of a GalNAc, Man, Fuc, Glc residue at the reducing end attached to a serine, threonine, hydroxylysine or hydroxyproline residue in a protein sequence in an alpha configuration."^^xsd:string ;
rdfs:label "O-glycan"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#Referenced_compound
:Referenced_compound rdf:type owl:Class ;
owl:equivalentClass :referenced_compound ;
rdfs:comment """Initial class name is capitalized.
\"glycan:Referenced_compound\""""@en ;
rdfs:label "Referenced Compound"@en .
### http://purl.jp/bio/12/glyco/glycan#Saccharide
:Saccharide rdf:type owl:Class ;
owl:equivalentClass :saccharide ;
rdfs:subClassOf :compound ;
rdfs:comment """Initial class name is capitalized.
\"glycna:Saccharide\""""@en ;
rdfs:label "Saccharide"@en .
### http://purl.jp/bio/12/glyco/glycan#Source_natural
:Source_natural rdf:type owl:Class ;
owl:equivalentClass :source_natural ;
rdfs:subClassOf :source ;
rdfs:comment """Initial class name is capitalized.
\"glycan:Source_natural\""""@en ;
rdfs:label "Source Natural"@en .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration
:absolute_configuration rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Absolute configuration of a monosaccharide basetype. Possible values are D, L or Unknown."^^xsd:string ;
rdfs:label "Absolute Configuration"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct
:adduct rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "Adduct"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct_ion
:adduct_ion rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "Adduct Ion"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#aglycon
:aglycon rdf:type owl:Class ;
rdfs:subClassOf :compound ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :amino_acid
:glycoconjugate
:saccharide
)
] ;
rdfs:comment "Instances of this class represent the aglyca which are covalently attached to the glycans. It contains information about the aglycon, the linkage position in aglycon and glycan."^^xsd:string ;
rdfs:label "Aglycon"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#amino_acid
:amino_acid rdf:type owl:Class ;
rdfs:subClassOf :compound ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :aglycon
:glycoconjugate
:saccharide
)
] ;
rdfs:label "Amino Acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer
:anomer rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Anomer of a monosaccharide. Possible values are alpha, beta, unknown or none."^^xsd:string ;
rdfs:label "Anomer"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#antibody
:antibody rdf:type owl:Class ;
rdfs:subClassOf :glycan_binder ;
rdfs:comment "A subclass of glycan_binder which binds to an epitope; in this namespace, this is a glycoepitope, which may be a (part of a) glycan or a part of a glycoconjugate."^^xsd:string ;
rdfs:label "Antibody"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#basetype
:basetype rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Basetype of the monosaccharide in accordance to GlycoCT and MonosaccharideDB definitions."^^xsd:string ;
rdfs:label "Basetype"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#biological_repeat_unit
:biological_repeat_unit rdf:type owl:Class ;
rdfs:subClassOf :motif ;
rdfs:comment "A biological repeat unit contains the monosaccharides of the repetitive oligosaccharide unit in the arrangement as they are synthesized."^^xsd:string ;
rdfs:label "Biological Repeat Unit"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#buffer
:buffer rdf:type owl:Class ;
rdfs:subClassOf :role ;
rdfs:comment "A buffer is an aqueous solution consisting of a mixture of a weak acid and its conjugate base or a weak base and its conjugate acid."^^xsd:string ;
rdfs:label "Buffer"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format
:carbohydrate_format rdf:type owl:Class ;
rdfs:comment "Instances of this class are the carbohydrate sequence formats. "^^xsd:string ;
rdfs:label "Carbohydrate Format"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#chemical_release
:chemical_release rdf:type owl:Class ;
rdfs:subClassOf :glycan_release ;
rdfs:comment "Release of glycan that is used chemical reaction."^^xsd:string ;
rdfs:label "Chemical Release"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#chemical_repeat_unit
:chemical_repeat_unit rdf:type owl:Class ;
rdfs:subClassOf :motif ;
rdfs:comment "A chemical repeat unit is generated when a polysaccharide is chopped down for the analysis. The sequence of the oligomer is based on the reaction chopping down the glycan and may not represent the biological repeat unit."^^xsd:string ;
rdfs:label "Chemical Repeat Unit"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#citation
:citation rdf:type owl:Class ;
rdfs:comment "References are publications related to the glycan structures or features. This can be journal papers, book chapters, conference articles and so on."^^xsd:string ;
rdfs:label "Citation"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#component
:component rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ,
[ rdf:type owl:Restriction ;
owl:onProperty :has_monosaccharide ;
owl:someValuesFrom :monosaccharide
] ;
rdfs:comment "Components are used to specify the composition of glycans. A component has a reference to the molecule (monosaccharide, substituent) and a number of occurrences for this molecule in the glycan."^^xsd:string ;
rdfs:label "Component"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#compound
:compound rdf:type owl:Class ;
rdfs:comment "Superclass of types of glycan related molecules and fragments."^^xsd:string ;
rdfs:label "Compound"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#configuration
:configuration rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Configuration of a monosaccharide. Each monosaccharide can have several configurations (e.g. dgro-dgal). Each configuration consist of a absolute configuration and a relative configuration."^^xsd:string ;
rdfs:label "Configuration"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification
:core_modification rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Core modification of a monosaccharide. A core modification consists of a modification type and the position(s) at which this modification happened."^^xsd:string ;
rdfs:label "Core Modification"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type
:core_modification_type rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "List of core modifications that can appear on a monosaccharide."^^xsd:string ;
rdfs:label "Core Modification Type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#cyclic_glycan
:cyclic_glycan rdf:type owl:Class ;
rdfs:subClassOf :saccharide ;
rdfs:comment "Cyclic glycans are a special form of glycans which are rarely found in nature. As implied by the name, they form cyclic structures, in contrast to the branched tree structures of commonly known glycans."^^xsd:string ;
rdfs:label "Cyclic Glycan"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#enzymatic_release
:enzymatic_release rdf:type owl:Class ;
rdfs:subClassOf :glycan_release ;
rdfs:comment "Release of glycan by an enzymatic reaction."^^xsd:string ;
rdfs:label "Enzymatic Release"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#enzyme
:enzyme rdf:type owl:Class ;
rdfs:subClassOf :role ;
rdfs:comment "Enzyme that take part in synthesis anddegradation of glycan."^^xsd:string ;
rdfs:label "Enzyme"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence
:evidence rdf:type owl:Class ;
rdfs:comment "An evidence is any kind of experimental data that can be linked to glycans. These are mainly experiments that elucidate the carbohydrate structure or feature but can also include experiments for creating carbohydrates for example by synthesis."^^xsd:string ;
rdfs:label "Evidence"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_IGOT
:evidence_IGOT rdf:type owl:Class ;
rdfs:subClassOf :evidence_lc_ms ;
rdfs:comment "Is an IGOT experiment, subclass of glycan:evidence_lc_ms. IGOT experiment is a procedure for the large-scale identification of N-glycosylated proteins, with isotope-coded glycosylation-site-specific tagging. (PMID: 12754521)"^^xsd:string ;
rdfs:label "Evidence IGOT"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_binding
:evidence_binding rdf:type owl:Class ;
rdfs:subClassOf :evidence ;
rdfs:comment "Entities of this class represent molecular interactions between instances of glycan:saccharide and glycan:glycan_binder, elucidated by experimental results. "^^xsd:string ;
rdfs:label "Evidence Binding"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_binding_antibody
:evidence_binding_antibody rdf:type owl:Class ;
rdfs:subClassOf :evidence_binding ;
rdfs:comment "Entities of this class represent molecular interactions between instances of epitope and antibody, elucidated by experimental results. "^^xsd:string ;
rdfs:label "Evidence Binding Antibody"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_binding_lectin
:evidence_binding_lectin rdf:type owl:Class ;
rdfs:subClassOf :evidence_binding ;
rdfs:comment "Entities of this class represent molecular interactions between instances of glycan and lectin, elucidated by experimental results."^^xsd:string ;
rdfs:label "Evidence Binding Lectin"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_ce
:evidence_ce rdf:type owl:Class ;
rdfs:subClassOf :evidence ;
rdfs:comment "Experiments using capillary electrophoresis to identify and characterize carbohydrate structures."^^xsd:string ;
rdfs:label "Evidence CE"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_lc
:evidence_lc rdf:type owl:Class ;
rdfs:subClassOf :evidence ;
rdfs:comment "Experiments using LC techniques to identify and characterize carbohydrates or used for separating glycans by charge or other retention properties."^^xsd:string ;
rdfs:label "Evidence LC"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_lc_ms
:evidence_lc_ms rdf:type owl:Class ;
rdfs:subClassOf :evidence_ms ;
rdfs:label "Evidence LC MS"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_ms
:evidence_ms rdf:type owl:Class ;
rdfs:subClassOf :evidence ;
rdfs:comment "Experiments using mass spectrometry to identify the carbohydrate structures."^^xsd:string ;
rdfs:label "Evidence MS"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_nmr
:evidence_nmr rdf:type owl:Class ;
rdfs:subClassOf :evidence ;
rdfs:comment "Experiments using NMR to identify the carbohydrate structure."^^xsd:string ;
rdfs:label "Evidence NMR"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type
:evidence_type rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "List of evidence types."^^xsd:string ;
rdfs:label "Evidence Type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_binder
:glycan_binder rdf:type owl:Class ;
rdfs:subClassOf :role ;
rdfs:comment "A class of compound that has affinity to a glycan or glycoconjugate. Usually a reference to a lectin, virus, bacteria, etc."^^xsd:string ;
rdfs:label "Glycan Binder"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_database
:glycan_database rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "A class representing databases that store glycans and related information. If possible, owl:sameAs should be used referencing the biosharing entry for this database."^^xsd:string ;
rdfs:label "Glycan Database"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_database_category
:glycan_database_category rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "Instances of this class are the categories for the classification of glycan databases."^^xsd:string ;
rdfs:label "Glycan Database Category"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_epitope
:glycan_epitope rdf:type owl:Class ;
rdfs:subClassOf :glycan_motif ;
rdfs:comment "A glycan epitope is a special motif which has a known biological function."^^xsd:string ;
rdfs:label "Glycan Epitope"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_motif
:glycan_motif rdf:type owl:Class ;
rdfs:subClassOf :motif ;
rdfs:comment "A glycan motif is a sub-structure of glycans that has been named because of its frequent appearance or because of the biological meaning. "^^xsd:string ;
rdfs:label "Glycan Motif"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycan_release
:glycan_release rdf:type owl:Class ;
rdfs:subClassOf :sample_preparation ;
rdfs:comment "A class for process of glycan release, including chemical and enzymatic reaction."^^xsd:string ;
rdfs:label "Glycan Release"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoconjugate
:glycoconjugate rdf:type owl:Class ;
rdfs:subClassOf :compound ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :aglycon
:amino_acid
:saccharide
)
] ;
rdfs:comment "Superclass of biomolecules consisting of a glycan part and an aglycon part, that are covalently attached to each other."^^xsd:string ;
rdfs:label "Glycoconjugate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoconjugate_sequence
:glycoconjugate_sequence rdf:type owl:Class ;
rdfs:subClassOf :sequence ;
rdfs:comment "Sequence of the glycoconjugate that includes the carbohydrate and the aglyca. Predicates should be selected based on the format used to represent the structure."^^xsd:string ;
rdfs:label "Glycoconjugate Sequence"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycolipid
:glycolipid rdf:type owl:Class ;
rdfs:subClassOf :glycoconjugate ;
rdfs:comment "Lipid with saccharide(s) attached by glycosidic bond(s). "^^xsd:string ;
rdfs:label "Glycolipid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycopeptide
:glycopeptide rdf:type owl:Class ;
rdfs:subClassOf :glycoconjugate ;
rdfs:comment "A class involves artificial degradation products of glycoproteins with protease digestion, which typically results from a proteomics experiment. There are reasons or traces that at least one amino acid residue of the peptide is glycosylated."^^xsd:string ;
rdfs:label "Glycopeptide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoprotein
:glycoprotein rdf:type owl:Class ;
rdfs:subClassOf :glycoconjugate ;
rdfs:comment "A compound that consists of protein and glycan parts; they are covalently attached to each other by a glycosidic bond. There are reasons or traces that at least one amino acid residue of the protein is glycosylated."^^xsd:string ;
rdfs:label "Glycoprotein"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosequence
:glycosequence rdf:type owl:Class ;
rdfs:subClassOf :sequence ;
rdfs:comment "Sequence of the glycan in a specified sequence format."^^xsd:string ;
rdfs:label "Glycosequence"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycoside
:glycoside rdf:type owl:Class ;
rdfs:subClassOf :glycoconjugate ;
rdfs:label "Glycoside"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosyl_hydrolase_reaction
:glycosyl_hydrolase_reaction rdf:type owl:Class ;
rdfs:subClassOf :reaction ;
rdfs:comment "Instances of this class are glycosyl hydrolase reactions which releases monosaccharide or oligosaccharides from the glycan or glycoconjugate."^^xsd:string ;
rdfs:label "Glycosyl Hydrolase Reaction"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosylated_AA
:glycosylated_AA rdf:type owl:Class ;
rdfs:subClassOf :glycoconjugate ;
rdfs:comment "An amino acid residue, in a glycoprotein or glycopeptide sequence, that a glycan is covalently attached. To specify glycosylation type or bond of glycoprotein."^^xsd:string ;
rdfs:label "Glycosylated Amino Acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycosyltransferase_reaction
:glycosyltransferase_reaction rdf:type owl:Class ;
rdfs:subClassOf :reaction ;
rdfs:comment "Instances of this class are glycosyltransferase reactions that build up glycans or glycoconjugates by attaching additional monosaccharides or oligosaccharides to them."^^xsd:string ;
rdfs:label "Glycosyltransferase Reaction"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#gradient
:gradient rdf:type owl:Class ;
rdfs:subClassOf :lc_property ;
rdfs:label "Gradient"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#image
:image rdf:type owl:Class ;
rdfs:subClassOf <http://xmlns.com/foaf/0.1/Image> ;
rdfs:comment "Image class for representing glycan images."^^xsd:string ;
rdfs:label "Image"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lc_chromatogram
:lc_chromatogram rdf:type owl:Class ;
rdfs:subClassOf :lc_property ;
rdfs:label "LC Chromatogram"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lc_column
:lc_column rdf:type owl:Class ;
rdfs:subClassOf :lc_property ;
rdfs:label "LC Column"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lc_digest_chromatogram
:lc_digest_chromatogram rdf:type owl:Class ;
rdfs:subClassOf :lc_property ;
rdfs:label "LC Digest Chromatogram"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lc_peak
:lc_peak rdf:type owl:Class ;
rdfs:subClassOf :lc_property ;
rdfs:label "LC Peak"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lc_property
:lc_property rdf:type owl:Class ;
rdfs:comment "Class that contains Liquid Chromatography properties such as gradient, Lc column."^^xsd:string ;
rdfs:label "LC Property"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lectin
:lectin rdf:type owl:Class ;
rdfs:subClassOf :glycan_binder ;
rdfs:comment "A class of protein that binds to glycans but is neither an antibody nor an enzyme."^^xsd:string ;
rdfs:label "Lectin"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type
:linkage_type rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "List of linkage types that can occur on the monosaccharide side of monosaccharide to substituent linkages."^^xsd:string ;
rdfs:label "Linkage Type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lipid
:lipid rdf:type owl:Class ;
rdfs:subClassOf :aglycon ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :peptide
:protein
)
] ;
rdfs:label "Lipid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#mass_spectrometry_device
:mass_spectrometry_device rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "Mass Spectrometry Device"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#mass_spectrum
:mass_spectrum rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "Mass Spectrum"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide
:monosaccharide rdf:type owl:Class ;
rdfs:subClassOf :saccharide ;
rdfs:comment """Instances of this class represent monosaccharides and their information. These monosaccharides are used to specify the composition of glycans, referenced by glycan:component. Sample URI:
http://www.monosaccharidedb.org/rdf/monosaccharide.action?name=o-dall-HEX-0:0"""^^xsd:string ;
rdfs:label "Monosaccharide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_alias
:monosaccharide_alias rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Alternative names for the monosaccharide in different databases or resources. The aliases consist of the name and the monosaccharide notation scheme."^^xsd:string ;
rdfs:label "Monosaccharide Alias"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme
:monosaccharide_notation_scheme rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "List of monosaccharide notation scheme. One monosaccharide can have several different names depending on the notation scheme. "^^xsd:string ;
rdfs:label "Monosaccharide Notation Scheme"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_property
:monosaccharide_property rdf:type owl:Class ;
rdfs:comment "Class that contains all monosaccharides properties such as anomer, basetype etc."^^xsd:string ;
rdfs:label "Monosaccharide Property"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#motif
:motif rdf:type owl:Class ;
rdfs:label "Motif"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_annotation
:ms_annotation rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "MS Annotation"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type
:ms_fragment_type rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "MS Fragment Type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_peak
:ms_peak rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:comment "Instances represent a peak in a mass spectrometry data consisting of an m/z value, intensity value and optional a charge state."^^xsd:string ;
rdfs:label "MS Peak"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_property
:ms_property rdf:type owl:Class ;
rdfs:comment "Class that contains Mass Spectrometry properties such as adduct, adduct ion etc."^^xsd:string ;
rdfs:label "MS Property"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#msn_spectrum
:msn_spectrum rdf:type owl:Class ;
rdfs:subClassOf :mass_spectrum ;
rdfs:label "Msn Spectrum"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#neutral_loss
:neutral_loss rdf:type owl:Class ;
rdfs:subClassOf :ms_property ;
rdfs:label "Neutral Loss"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#nmr_property
:nmr_property rdf:type owl:Class ;
rdfs:comment "Parentclass for all classes used in NMR evidences."^^xsd:string ;
rdfs:label "NMR Property"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#peptide
:peptide rdf:type owl:Class ;
rdfs:subClassOf :aglycon ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :lipid
:protein
)
] ;
rdfs:comment "Part of a protein amino acid sequence generated by digestion for analysis."^^xsd:string ;
rdfs:label "Peptide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#polymerization_degree
:polymerization_degree rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "A repeat is a property of a polysaccharide that specifies how often the oligomer part is repeated to form the polysaccharide."^^xsd:string ;
rdfs:label "Polymerization Degree"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#polysaccharide
:polysaccharide rdf:type owl:Class ;
rdfs:subClassOf :saccharide ;
rdfs:comment "Polysaccharides are a special form of glycans that consist of large repetitive oligosaccharide units. Often the exact number of repetitions cannot be specified because the experimental technique does not allow this or because the number of repetition in nature varies."^^xsd:string ;
rdfs:label "Polysaccharide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#profile_spectrum
:profile_spectrum rdf:type owl:Class ;
rdfs:subClassOf :mass_spectrum ;
rdfs:label "Profile Spectrum"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#protein
:protein rdf:type owl:Class ;
owl:equivalentClass uniprot:Protein ;
rdfs:subClassOf :aglycon ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :lipid
:peptide
)
] ;
rdfs:comment "Proteinous part of a glycoprotein that is equivalent to the nascent peptide or protein entities found in UniProt or other protein databases."^^xsd:string ;
rdfs:label "Protein"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#reaction
:reaction rdf:type owl:Class ;
rdfs:comment "Class for reaction process to create or degrade glycans or glycoconjugates."^^xsd:string ;
rdfs:label "Reaction"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#referenced_compound
:referenced_compound rdf:type owl:Class ;
rdfs:comment "Previously correlation instances, which connects a compound class and other information (source, references, evidence) that belong to one data set. That allows to specify that a compound instance, which has been found in a certain source was published by a certain publication. "^^xsd:string ;
rdfs:label "Referenced Compound"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#relative_configuration
:relative_configuration rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "List of relative monosaccharide configurations according to IUPAC."^^xsd:string ;
rdfs:label "Relative Configuration"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute
:repeat_attribute rdf:type owl:Class ;
rdfs:comment "List of possible attributes to specify the repeat count. Possible values are average, exact, minimum, maximum or unknown."^^xsd:string ;
rdfs:label "Repeat Attribute"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#resource_entry
:resource_entry rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "A resource entry describes an entry about the glycan in another database."^^xsd:string ;
rdfs:label "Resource Entry"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ring_type
:ring_type rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Ringtype of a basetype."^^xsd:string ;
rdfs:label "Ring Type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#role
:role rdf:type owl:Class ;
rdfs:comment "Classification hierarchy for molecular functions."^^xsd:string ;
rdfs:label "Role"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#saccharide
:saccharide rdf:type owl:Class ;
rdfs:subClassOf :compound ;
owl:disjointWith [ rdf:type owl:Class ;
owl:unionOf ( :aglycon
:amino_acid
:glycoconjugate
)
] ;
rdfs:comment "Instances of this class represent the molecule information of the glycans. That includes chemical composition, molecular weight but also related information such as images of the glycans."^^xsd:string ;
rdfs:label "Saccharide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#sample_preparation
:sample_preparation rdf:type owl:Class ;
rdfs:comment "A process which is the syntesis or preparation of sample for glycan analysis."^^xsd:string ;
rdfs:label "Sample Preparation"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#sequence
:sequence rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "A sequence is the textual description of a molecule. For example FASTA sequences for proteins / peptides. "^^xsd:string ;
rdfs:label "Sequence"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#signal
:signal rdf:type owl:Class ;
rdfs:subClassOf :nmr_property ;
rdfs:comment "A signal is a NMR data point."^^xsd:string ;
rdfs:label "Signal"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#software
:software rdf:type owl:Class ;
rdfs:comment "Software that has been utilized for the glycan. For example software used to model the glycan."^^xsd:string ;
rdfs:label "Software"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#solvent
:solvent rdf:type owl:Class ;
rdfs:subClassOf :role ;
rdfs:comment "A solvent is a substance that dissolves a solute (a chemically different liquid, solid or gas), resulting in a solution."^^xsd:string ;
rdfs:label "Solvent"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#solvent_part
:solvent_part rdf:type owl:Class ;
rdfs:comment "A solvent can consist of a mixture of different molecules. For each molecule a solvent part with the ratio and the molecule is created."^^xsd:string ;
rdfs:label "Solvent Part"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source
:source rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
rdfs:comment "Source of the glycan or glycoconjugate. The source can be a biological organism that the compound was found in, a synthesis procedure trying to reproduce a natural glycan or a modeling approach for the glycan."^^xsd:string ;
rdfs:label "Source"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_modeled
:source_modeled rdf:type owl:Class ;
rdfs:subClassOf :source ;
rdfs:comment "Class for modeled source. Instance contain information about the software used for modeling and the target organism."^^xsd:string ;
rdfs:label "Source Modeled"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_natural
:source_natural rdf:type owl:Class ;
rdfs:subClassOf :source ;
rdfs:comment "Class for sources from biological organism. Instances contain information about the species, cell type, tissue and so on."^^xsd:string ;
rdfs:label "Source Natural"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_sample
:source_sample rdf:type owl:Class ;
rdfs:subClassOf :source ;
rdfs:comment "Class for source from sample. Instance contain sample type."^^xsd:string ;
rdfs:label "Source Sample"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#source_synthetic
:source_synthetic rdf:type owl:Class ;
rdfs:subClassOf :source ;
rdfs:comment "Class for source for synthetic glycans. In contains information about the type of synthesis approach used and if applicable the original biological source that was tried to mimic. "^^xsd:string ;
rdfs:label "Source Synthetic"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#subspectrum
:subspectrum rdf:type owl:Class ;
rdfs:subClassOf :nmr_property ,
[ rdf:type owl:Restriction ;
owl:onProperty :has_signal ;
owl:someValuesFrom :signal
] ;
rdfs:comment "Subspectrum of NMR data. It contains the annotated signals."^^xsd:string ;
rdfs:label "Subspectrum"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent
:substituent rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Substition of a monosaccharide by another molecule. The substituent consists of the substituent type and the linkage between monosaccharide and substituent. For example: http://www.monosaccharidedb.org/rdf/substituent/ethyl.rdf"^^xsd:string ;
rdfs:label "Substituent"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_linkage
:substituent_linkage rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "Linkage between a monosaccharide basetype and a substituent. It consist of the linkage position on the basetype side and the substituent side, and of the linkage type."^^xsd:string ;
rdfs:label "Substituent Linkage"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type
:substituent_type rdf:type owl:Class ;
rdfs:subClassOf :monosaccharide_property ;
rdfs:comment "List of substituent types possible on monosaccharides."^^xsd:string ;
rdfs:label "Substituent Type"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#sulfotransferase_reaction
:sulfotransferase_reaction rdf:type owl:Class ;
rdfs:subClassOf :reaction ;
rdfs:comment "Instances of this class are sulfotransferase reactions that modifies glycans or glycoconjugates by attaching sulfuric moiety to them."^^xsd:string ;
rdfs:label "Sulfotransferase Reaction"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format
:symbol_format rdf:type owl:Class ;
rdfs:comment "Graphical symbol formats used to represent glycans. This includes the symbol format form the CFG and from UOXF."^^xsd:string ;
rdfs:label "Symbol Format"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#synthetic_type
:synthetic_type rdf:type owl:Class ;
rdfs:comment "Type of synthesis used for creating the glycan. Possible values are chemical synthesis, enzymatic synthesis and chemoenzymetic synthesis."^^xsd:string ;
rdfs:label "Synthetic Type"^^xsd:string .
### http://purl.obolibrary.org/obo/MS_1000008
psi:MS_1000008 rdf:type owl:Class ;
rdfs:comment "PSI: The method by which gas phase ions are generated from the sample."^^xsd:string ;
rdfs:label "Ionization Type"^^xsd:string .
### http://purl.obolibrary.org/obo/MS_1000031
psi:MS_1000031 rdf:type owl:Class ;
rdfs:comment "PSI: Instrument model name not including the vendor&#39;s name."^^xsd:string ;
rdfs:label "Instrument Model"^^xsd:string .
### http://purl.obolibrary.org/obo/MS_1000443
psi:MS_1000443 rdf:type owl:Class ;
rdfs:comment "PSI: Mass analyzer separates the ions according to their mass-to-charge ratio."^^xsd:string ;
rdfs:label "Mass Analyzer Type"^^xsd:string .
### http://www.uniprot.org/core/Glycosylation_Annotation
uniprot:Glycosylation_Annotation rdf:type owl:Class ;
rdfs:comment "Uniprot term for Glycosylation type (e.g. N-glycosylation)"^^xsd:string ;
rdfs:label "Glycosylation Annotation"^^xsd:string .
### http://www.uniprot.org/core/Protein
uniprot:Protein rdf:type owl:Class ;
rdfs:subClassOf :aglycon ;
rdfs:comment "Uniprot protein class."^^xsd:string ;
rdfs:label "Protein"^^xsd:string .
### http://www.uniprot.org/core/Taxon
uniprot:Taxon rdf:type owl:Class ;
rdfs:comment "Uniprot taxon class."^^xsd:string ;
rdfs:label "Taxon"^^xsd:string .
### http://xmlns.com/foaf/0.1/Image
<http://xmlns.com/foaf/0.1/Image> rdf:type owl:Class ;
rdfs:comment "Image class."^^xsd:string ;
rdfs:label "Image"^^xsd:string .
#################################################################
# Individuals
#################################################################
### http://purl.jp/bio/12/glyco/glycan#C5D5N
:C5D5N rdf:type owl:NamedIndividual ,
:solvent .
### http://purl.jp/bio/12/glyco/glycan#CD3OD
:CD3OD rdf:type owl:NamedIndividual ,
:solvent .
### http://purl.jp/bio/12/glyco/glycan#CDCl3
:CDCl3 rdf:type owl:NamedIndividual ,
:solvent .
### http://purl.jp/bio/12/glyco/glycan#D2O
:D2O rdf:type owl:NamedIndividual ,
:solvent ;
rdfs:comment "Heavy water, formally called deuterium oxide. Deuterium oxide is used in NMR spectroscopy when the solvent of interest is water and the nuclide of interest is hydrogen."^^xsd:string ;
rdfs:label "D2O"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#DMSO
:DMSO rdf:type owl:NamedIndividual ,
:solvent ;
rdfs:comment "Dimethyl sulfoxide (DMSO) is an organosulfur compound with the formula (CH3)2SO. This colorless liquid is an important polar aprotic solvent that dissolves both polar and nonpolar compounds and is miscible in a wide range of organic solvents as well as water."^^xsd:string ;
rdfs:label "DMSO"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#GlycoStore
:GlycoStore rdf:type owl:NamedIndividual ,
:glycan_database .
### http://purl.jp/bio/12/glyco/glycan#H2O
:H2O rdf:type owl:NamedIndividual ,
:solvent ;
rdfs:comment "Water"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#PNGaseA_release
:PNGaseA_release rdf:type owl:NamedIndividual ,
:enzymatic_release ;
rdfs:comment "Release of glycan that is used PNGaseA."^^xsd:string ;
rdfs:label "PNGaseA release"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#PNGaseF_release
:PNGaseF_release rdf:type owl:NamedIndividual ,
:enzymatic_release ;
rdfs:comment "Release of glycan that is used PNGaseF."^^xsd:string ;
rdfs:label "PNGaseF release"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#_Fucosidase
:_Fucosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha1-2,4,6 Fucosidase that catalyses the hydrolysis of α1-2, α1-4, and α1-6 linked L-fucopyranosyl residues" ,
"Glycan(s) treated with alpha1-3,4 Fucosidase that catalyses the hydrolysis of α1-3 and α1-4 linked fucose residues"^^xsd:string ;
rdfs:label "alpha1-2,4,6 Fucosidase" ,
"alpha1-3,4 Fucosidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#_Galactosidase
:_Galactosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha1-3,6 Galactosidase that catalyses the hydrolysis of α1-3,6 linked D-galactopyranosyl residues"^^xsd:string ,
"Glycans treated with alpha1-3,4,6 Galactosidase that catalyses the hydrolysis of α1-3, α1-4, and α1-6 linked D-galactopyranosyl residues"^^xsd:string ;
rdfs:label "alpha1-3,4,6 Galactosidase"^^xsd:string ,
"alpha1-3,6 Galactosidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#_Mannosidase
:_Mannosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha1-2,3 Mannosidase that catalyses the hydrolysis of α1-2 and α1-3 linked D-Mannopyranosyl residues"^^xsd:string ;
rdfs:label "alpha1-2,3 Mannosidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#_Neuraminidase
:_Neuraminidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha2-3,6,8 Neuraminidase that removes α2-3, α2-6, and α2-8 linked N-acetyl-neuraminic acid residues"^^xsd:string ;
rdfs:label "alpha2-3,6,8 Neuraminidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#_Neuraminidase_A
:_Neuraminidase_A rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha2-3,6,8,9 Neuraminidase A that removed all terminal sialic acids. Note some enzymes release α2-3 and α2-6 linkages at a higher rate than α2-8 and α2-9."^^xsd:string ;
rdfs:label "alpha2-3,6,8,9 Neuraminidase A"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration_dexter
:absolute_configuration_dexter rdf:type owl:NamedIndividual ,
:absolute_configuration ;
rdfs:label "dexter"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration_laevus
:absolute_configuration_laevus rdf:type owl:NamedIndividual ,
:absolute_configuration ;
rdfs:label "laevus"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#absolute_configuration_unknown
:absolute_configuration_unknown rdf:type owl:NamedIndividual ,
:absolute_configuration ;
rdfs:label "unknown"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct_ion_h
:adduct_ion_h rdf:type owl:NamedIndividual ,
:adduct_ion ;
rdfs:label "H+"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#adduct_ion_na
:adduct_ion_na rdf:type owl:NamedIndividual ,
:adduct_ion ;
rdfs:label "Na+"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#alanine
:alanine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "Alanine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#allo
:allo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "allo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#alpha-N-acetylgalactosaminidase
:alpha-N-acetylgalactosaminidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha-N-acetylgalactosaminidase that catalyzes the hydrolysis of α-linked D-N-acetylgalactosamine" ;
rdfs:label "alpha-N-acetylgalactosaminidase" .
### http://purl.jp/bio/12/glyco/glycan#alpha1-2_Fucosidase
:alpha1-2_Fucosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha1-2 Fucosidase that catalyses the hydrolysis of linear α1-2 linked L-fucopyranosyl residues" ;
rdfs:label "alpha1-2 Fucosidase" .
### http://purl.jp/bio/12/glyco/glycan#alpha1-6_Mannosidase
:alpha1-6_Mannosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha1-6 Mannosidase that removes α1-6 linked D-mannopyranosyl residues."^^xsd:string ;
rdfs:label "alpha1-6 Mannosidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#alpha2-3_Neuraminidase
:alpha2-3_Neuraminidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with alpha2-3 Neuraminidase that catalyses the hydrolysis of α2-3 N-acetyl-neuraminic acid residues from oligosaccharides. Note some α2-6 linked removed at a lower rate." ;
rdfs:label "alpha2-3 Neuraminidase" .
### http://purl.jp/bio/12/glyco/glycan#alpha2-3_Neuraminidase_S
:alpha2-3_Neuraminidase_S rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan treated with alpha2-3 Neuraminidase S" ;
rdfs:label "alpha2-3 Neuraminidase S" .
### http://purl.jp/bio/12/glyco/glycan#altro
:altro rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "altro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#aminoacridone
:aminoacridone rdf:type owl:NamedIndividual ,
:Label ;
rdfs:comment "Glycan labelled with 2-aminoacridone" ;
rdfs:label "2-aminoacridone" .
### http://purl.jp/bio/12/glyco/glycan#aminobenzamide
:aminobenzamide rdf:type owl:NamedIndividual ,
:Label ;
rdfs:comment "Glycan labelled with 2-aminobenzamide" ;
rdfs:label "2-aminobenzamide" .
### http://purl.jp/bio/12/glyco/glycan#aminobenzoic_acid
:aminobenzoic_acid rdf:type owl:NamedIndividual ,
:Label ;
rdfs:comment "Glycan labelled with 2-aminobenzoic acid" ;
rdfs:label "2-aminobenzoic acid" .
### http://purl.jp/bio/12/glyco/glycan#aminopyridine
:aminopyridine rdf:type owl:NamedIndividual ,
:Label ;
rdfs:comment "Glycan labelled with 2-aminopyridine" ;
rdfs:label "2-aminopyridine" .
### http://purl.jp/bio/12/glyco/glycan#anomer_alpha
:anomer_alpha rdf:type owl:NamedIndividual ,
:anomer ;
rdfs:label "alpha"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_beta
:anomer_beta rdf:type owl:NamedIndividual ,
:anomer ;
rdfs:label "beta"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_none
:anomer_none rdf:type owl:NamedIndividual ,
:anomer ;
rdfs:label "none"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#anomer_unknown
:anomer_unknown rdf:type owl:NamedIndividual ,
:anomer ;
rdfs:label "unknown"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#arabino
:arabino rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "arabino"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#arginine
:arginine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "arginine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#asparagine
:asparagine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "asparagine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#aspartic_acid
:aspartic_acid rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "aspartic acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#beta-N-Acetylglucosaminidase
:beta-N-Acetylglucosaminidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with beta-N-Acetylglucosaminidase that catalyses the hydrolysis of terminal, non-reducing β-N-Acetylglucosamine residues"^^xsd:string ;
rdfs:label "beta-N-Acetylglucosaminidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#beta-N-Acetylglucosaminidase_S
:beta-N-Acetylglucosaminidase_S rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan treated with beta-N-Acetylglucosaminidase S"^^xsd:string ;
rdfs:label "beta-N-Acetylglucosaminidase S"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#beta-N-Acetylhexosaminidase
:beta-N-Acetylhexosaminidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan treated with beta-N-Acetylhexosaminidase that catalyses the hydrolysis of terminal β-D-N-acetyl-galactosamine and glucosamine residues from oligosaccharides."^^xsd:string ;
rdfs:label "beta-N-Acetylhexosaminidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#beta1-3_Galactosidase
:beta1-3_Galactosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with beta1-3 Galactosidase that catalyses the hydrolysis of β1-3 D-galactopyranosyl residues. Some enzymes known to cleave β1-6 but a lower rate."^^xsd:string ;
rdfs:label "beta1-3 Galactosidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#beta1-4_Galactosidase
:beta1-4_Galactosidase rdf:type owl:NamedIndividual ,
:Glycosidase_Treatment ;
rdfs:comment "Glycan(s) treated with beta1-4 Galactosidase that catalyses the hydrolysis of β1-4 linked D-galactopyranosyl residues."^^xsd:string ;
rdfs:label "beta1-4 Galactosidase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#beta_elimination
:beta_elimination rdf:type owl:NamedIndividual ,
:chemical_release ;
rdfs:comment "Beta elimination that released glycan from glycoconjugate."^^xsd:string ;
rdfs:label "beta elimination"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_carbbank
:carbohydrate_format_carbbank rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "carbbank"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_csdb
:carbohydrate_format_csdb rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "csdb"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glycoct
:carbohydrate_format_glycoct rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "glycoct"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_glyde2
:carbohydrate_format_glyde2 rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "glyde2"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_condensed
:carbohydrate_format_iupac_condensed rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "iupac condensed"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_extended
:carbohydrate_format_iupac_extended rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "iupac extended"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_iupac_short
:carbohydrate_format_iupac_short rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "iupac short"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_kcf
:carbohydrate_format_kcf rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "kcf"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linearcode
:carbohydrate_format_linearcode rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "linearcode"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_linucs
:carbohydrate_format_linucs rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "linucs"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#carbohydrate_format_wurcs
:carbohydrate_format_wurcs rdf:type owl:NamedIndividual ,
:carbohydrate_format ;
rdfs:label "wurcs"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#configuration_x
:configuration_x rdf:type owl:NamedIndividual ,
:configuration ;
rdfs:label "x"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_acid
:core_modification_type_acid rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Carboxyl (COOH) group."^^xsd:string ;
rdfs:label "acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_aldi
:core_modification_type_aldi rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Alditol: Reduction of the aldehyde group to CH2OH."^^xsd:string ;
rdfs:label "aldi"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_anhydro
:core_modification_type_anhydro rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Intramolecular anhydride."^^xsd:string ;
rdfs:label "anhydro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_deoxy
:core_modification_type_deoxy rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Deoxygenation of a position: The OH group is removed and replaced by a hydrogen atom."^^xsd:string ;
rdfs:label "deoxy"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_en
:core_modification_type_en rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Double bond in the basetype backbone. This modification implies that - unless explicitly stated with a deoxy modification - hydroxyl groups are preserved."^^xsd:string ;
rdfs:label "en"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_enx
:core_modification_type_enx rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Double bond in the basetype backbone with unknown deoxygenation pattern."^^xsd:string ;
rdfs:label "enx"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_geminal
:core_modification_type_geminal rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Loss of stereochemistry due to identical substituents with DEOXY and H_LOSE linkage types at a single position."^^xsd:string ;
rdfs:label "geminal"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_keto
:core_modification_type_keto rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "A carbonyl group in the open chain version of a monosaccharide. This modification is omitted if it is only present at position 1 (standard aldose)."^^xsd:string ;
rdfs:label "keto"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_sp
:core_modification_type_sp rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Triple bond to a substituent."^^xsd:string ;
rdfs:label "sp"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_sp2
:core_modification_type_sp2 rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Double bond to a substituent."^^xsd:string ;
rdfs:label "sp2"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#core_modification_type_yn
:core_modification_type_yn rdf:type owl:NamedIndividual ,
:core_modification_type ;
rdfs:comment "Triple bond in the basetype backbone."^^xsd:string ;
rdfs:label "yn"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#cysteine
:cysteine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "cysteine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-alanine
:d-alanine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "D-Alanine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-arginine
:d-arginine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-arginine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-asparagine
:d-asparagine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-asparagine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-aspartic_acid
:d-aspartic_acid rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-aspartic acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-cysteine
:d-cysteine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-cysteine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-glutamic_acid
:d-glutamic_acid rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-glutamic acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-glutamine
:d-glutamine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-glutamine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-glycine
:d-glycine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-glycine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-histidine
:d-histidine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-histidine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-isoleucine
:d-isoleucine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-isoleucine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-leucine
:d-leucine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-leucine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-lysine
:d-lysine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-lysine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-methionine
:d-methionine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-methionine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-phenylalanine
:d-phenylalanine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-phenylalanine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-proline
:d-proline rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-proline"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-selenocysteine
:d-selenocysteine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-selenocysteine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-serine
:d-serine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-serine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-threonine
:d-threonine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-threonine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-tryptophan
:d-tryptophan rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-tryptophan"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-tyrosine
:d-tyrosine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-tyrosine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#d-valine
:d-valine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_dexter ;
rdfs:label "d-valine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_bcsdb
:database_bcsdb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_bibliography ,
:database_category_cabohydrate_structure ,
:database_category_experimental ,
:database_category_taxonomy ;
:has_abbreviation "BCSDB"^^xsd:string ;
:has_url_template "http://csdb.glycoscience.ru/bacterial/core/search_id.php?mode=record&id_list=[?id?]"^^xsd:string ;
rdfs:label "BCSDB"^^xsd:string ;
rdfs:seeAlso "http://csdb.glycoscience.ru/bacterial/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Bacterial Carbohydrate Structure DataBase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_carbbank
:database_carbbank rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "CCSD"^^xsd:string ;
:has_url_template "http://www.genome.jp/dbget-bin/www_bget?carbbank+[?id?]"^^xsd:string ;
rdfs:label "CarbBank"^^xsd:string ;
rdfs:seeAlso "http://www.genome.jp/dbget-bin/www_bfind?carbbank"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Complex Carbohydrate Structure Database"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_carint
:database_carint rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_carbohydrate_interaction ;
:has_abbreviation "Carint"^^xsd:string ;
:has_url_template "http://ws.glyconavi.org/carint/entry.php?id=[?id?]"^^xsd:string ;
rdfs:label "Carint"^^xsd:string ;
rdfs:seeAlso "http://ws.glyconavi.org/carint/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Carbohydrate Interaction Database"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_bibliography
:database_category_bibliography rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:label "bibliography"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_cabohydrate_structure
:database_category_cabohydrate_structure rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:comment "Database containing glycan structure information."^^xsd:string ;
rdfs:label "structure"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_carbohydrate_conformation
:database_category_carbohydrate_conformation rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:comment "Database containing carbohydrate conformation"^^xsd:string ;
rdfs:label "carbohydrate conformation"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_carbohydrate_interaction
:database_category_carbohydrate_interaction rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:label "carbohydrate interaction"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_chemical_compound
:database_category_chemical_compound rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:comment "Database of carbohydrates at the atomic level."^^xsd:string ;
rdfs:label "chemical compound"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_experimental
:database_category_experimental rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:comment "Database of glycomics experiments such as NMR, MS, array data, etc-"^^xsd:string ;
rdfs:label "experimental"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_glycan_binding_protein
:database_category_glycan_binding_protein rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:label "glycan binding protein"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_glycoenzyme
:database_category_glycoenzyme rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:label "glycoenyzme"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_monosaccharide
:database_category_monosaccharide rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:comment "Database containing monosaccharide information."^^xsd:string ;
rdfs:label "monosaccharide"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_synthesis
:database_category_synthesis rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:label "synthesis"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_taxonomy
:database_category_taxonomy rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:comment "Taxonomical information regarding glycans are available."^^xsd:string ;
rdfs:label "taxonomy"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_category_tissue
:database_category_tissue rdf:type owl:NamedIndividual ,
:glycan_database_category ;
rdfs:label "tissue"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_cazy
:database_cazy rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_glycoenzyme ;
:has_abbreviation "CAZy"^^xsd:string ;
:has_url_template "http://www.cazy.org/[?id?].html"^^xsd:string ;
rdfs:label "CAZy"^^xsd:string ;
rdfs:seeAlso "http://www.cazy.org"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Carbhoydrate-Active enZYmes"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_cfg
:database_cfg rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_cabohydrate_structure ;
:has_abbreviation "CFG"^^xsd:string ;
:has_url_template "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=[?id?]&sideMenu=no%0A%20%20%09%09"^^xsd:string ;
rdfs:label "CFG"^^xsd:string ;
rdfs:seeAlso "http://www.functionalglycomics.org/glycomics/molecule/jsp/carbohydrate/carbMoleculeHome.jsp"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Consortium for Functional Glycomics Structure Database"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_cfg_gbp
:database_cfg_gbp rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_glycan_binding_protein ;
:has_abbreviation "CfgGBP"^^xsd:string ;
:has_url_template "http://www.functionalglycomics.org/glycomics/molecule/jsp/viewGbpMolecule.jsp?gbpId=[?id?]&sideMenu=yes"^^xsd:string ;
rdfs:label "CfgGBP"^^xsd:string ;
rdfs:seeAlso "http://www.functionalglycomics.org/glycomics/molecule/jsp/gbpMolecule-home.jsp"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "CFG Glycan Binding Proteins"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_cfg_glycoenzymes
:database_cfg_glycoenzymes rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_glycoenzyme ;
:has_abbreviation "CfgGlycoenzyme"^^xsd:string ;
:has_url_template "http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/viewGlycoEnzyme.jsp?gbpId=[?id?]&sideMenu=true&pageType=general"^^xsd:string ;
rdfs:label "CfgGlycoenzyme"^^xsd:string ;
rdfs:seeAlso "http://www.functionalglycomics.org/glycomics/molecule/jsp/glycoEnzyme/geMolecule.jsp"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "CFG Glycosyltransferases DB"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_chebi
:database_chebi rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_chemical_compound ;
:has_abbreviation "ChEBI"^^xsd:string ;
:has_url_template "http://www.ebi.ac.uk/chebi/advancedSearchFT.do?searchString='[?id?]'"^^xsd:string ;
rdfs:label "ChEBI"^^xsd:string ;
rdfs:seeAlso "http://www.ebi.ac.uk/chebi/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Chemical Entities of Biological Interest"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_chemspider
:database_chemspider rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_chemical_compound ;
:has_abbreviation "ChemSpider"^^xsd:string ;
:has_url_template "http://www.chemspider.com/Chemical-Structure.[?id?].html"^^xsd:string ;
rdfs:label "ChemSpider"^^xsd:string ;
rdfs:seeAlso "http://www.chemspider.com/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "ChemSpider"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glyaffinity
:database_glyaffinity rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "GlyAffinity"^^xsd:string ;
:has_url_template "http://worm.mpi-cbg.de/affinity/structure.action?ID=[?id?]"^^xsd:string ;
rdfs:label "GlyAffinity"^^xsd:string ;
rdfs:seeAlso "http://www.glycosciences.de/affinity/browse.action"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlyAffinity"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glyco
:database_glyco rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "GlycO"^^xsd:string ;
:has_url_template "http://glycomics.ccrc.uga.edu/ontologywebapi/service/glycan/id/[?id?]"^^xsd:string ;
rdfs:label "GlycO"^^xsd:string ;
rdfs:seeAlso "http://ccrc.uga.edu/ontology/GlycO/GlycO.owl"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Glycomics Ontology"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glycobase_dublin
:database_glycobase_dublin rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "GlycoBase(Dublin)"^^xsd:string ;
rdfs:label "GlycoBase(Dublin)"^^xsd:string ;
rdfs:seeAlso "http://glycobase.nibrt.ie/glycobase/show_nibrt.action"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlycoBase(Dublin)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glycobase_lille
:database_glycobase_lille rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "GlycoBase(Lille)"^^xsd:string ;
:has_url_template "http://glycobase.univ-lille1.fr/base/view_mol.php?id=[?id?]"^^xsd:string ;
rdfs:label "GlycoBase(Lille)"^^xsd:string ;
rdfs:seeAlso "http://glycobase.univ-lille1.fr/base/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlycoBase(Lille)"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glycomapsdb
:database_glycomapsdb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_carbohydrate_conformation ;
:has_abbreviation "GlycoMapsDB"^^xsd:string ;
:has_url_template "http://www.glycosciences.de/modeling/glycomapsdb/showdetails.php?mapid=[?id?]"^^xsd:string ;
rdfs:label "GlycoMapsDB"^^xsd:string ;
rdfs:seeAlso "http://www.glycosciences.de/modeling/glycomapsdb/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlycoMapsDB"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glycomedb
:database_glycomedb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "GlycomeDB"^^xsd:string ;
:has_url_template "http://www.glycome-db.org/database/showStructure.action?glycomeId=[?id?]"^^xsd:string ;
rdfs:label "GlycomeDB"^^xsd:string ;
rdfs:seeAlso "http://www.glycome-db.org/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlycomeDB"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glyconavi
:database_glyconavi rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_chemical_compound ,
:database_category_experimental ,
:database_category_synthesis ;
:has_abbreviation "GlycoNAVI"^^xsd:string ;
:has_url_template "http://ws.glyconavi.org/DbDetail/moldetail.aspx?moleculeID=[?id?]"^^xsd:string ;
rdfs:label "GlycoNAVI"^^xsd:string ;
rdfs:seeAlso "http://ws.glyconavi.org/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlycoNAVI"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glyconmr
:database_glyconmr rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_experimental ;
:has_abbreviation "GlycoNMR"^^xsd:string ;
:has_url_template "http://glycoinfolab.jp/GlycoNMR/GeneralDetail?spc=[?id?]"^^xsd:string ;
rdfs:label "GlycoNMR"^^xsd:string ;
rdfs:seeAlso "http://glycoinfolab.jp/GlycoNMR/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GlycoNMR"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_glycosciences_de
:database_glycosciences_de rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_bibliography ,
:database_category_cabohydrate_structure ,
:database_category_carbohydrate_conformation ,
:database_category_experimental ,
:database_category_taxonomy ;
:has_abbreviation "GLYCOSCIENCES.de"^^xsd:string ;
:has_url_template "http://www.glycosciences.de/sweetdb/start.php?action=explore_linucsid&linucsid=[?id?]&show=1#struct%0A%20%20%09%09"^^xsd:string ;
rdfs:label "GLYCOSCIENCES.de"^^xsd:string ;
rdfs:seeAlso "http://www.glycosciences.de/database/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "GLYCOSCIENCES.de"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_jcggdb
:database_jcggdb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "JCGGDB"^^xsd:string ;
:has_url_template "http://jcggdb.jp/idb/jcggdb/[?id?]"^^xsd:string ;
rdfs:label "JCGGDB"^^xsd:string ;
rdfs:seeAlso "http://jcggdb.jp/index_en.html"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Japan Consortium for Glycobiology and Glycotechnology DataBase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_kegg
:database_kegg rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "KEGG"^^xsd:string ;
:has_url_template "http://www.genome.jp/dbget-bin/www_bget?gl:[?id?]"^^xsd:string ;
rdfs:label "KEGG"^^xsd:string ;
rdfs:seeAlso "http://www.genome.jp/kegg/glycan/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Kyoto Encyclopedia of Genes and Genomes"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_monosaccharidedb
:database_monosaccharidedb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_monosaccharide ;
:has_abbreviation "MonosaccharideDB"^^xsd:string ;
:has_url_template "http://www.monosaccharidedb.org/display_monosaccharide.action?id=[?id?]"^^xsd:string ;
rdfs:label "MonosaccharideDB"^^xsd:string ;
rdfs:seeAlso "http://www.monosaccharidedb.org"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "MonosaccharideDB"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_pdb
:database_pdb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_abbreviation "PDB"^^xsd:string ;
:has_url_template "http://www.rcsb.org/pdb/explore/explore.do?structureId=[?id?]"^^xsd:string ;
rdfs:label "PDB"^^xsd:string ;
rdfs:seeAlso "http://www.rcsb.org/pdb/home/home.do"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "RCSB Protein Data Bank"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_pfcsdb
:database_pfcsdb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_bibliography ,
:database_category_cabohydrate_structure ,
:database_category_experimental ,
:database_category_taxonomy ;
:has_abbreviation "PFCSDB"^^xsd:string ;
:has_url_template "http://csdb.glycoscience.ru/plant_fungal/core/search_id.php?mode=record&id_list=[?id?]"^^xsd:string ;
rdfs:label "PFCSDB"^^xsd:string ;
rdfs:seeAlso "http://csdb.glycoscience.ru/plant_fungal/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Plant and Fungal Carbohydrate Structure DataBase"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_pubchem
:database_pubchem rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_chemical_compound ;
:has_abbreviation "PubChem"^^xsd:string ;
:has_url_template "http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=[?id?]"^^xsd:string ;
rdfs:label "PubChem"^^xsd:string ;
rdfs:seeAlso "http://pubchem.ncbi.nlm.nih.gov/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "PubChem"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_smsa
:database_smsa rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_chemical_compound ;
:has_abbreviation "SMSA"^^xsd:string ;
:has_url_template "http://ws.glyconavi.org/SM/id.php?Id=[?id?]"^^xsd:string ;
rdfs:label "SMSA"^^xsd:string ;
rdfs:seeAlso "http://ws.glyconavi.org/SM/"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "Small Molecule for Spectral Analysis"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_unicarb_db
:database_unicarb_db rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_cabohydrate_structure ,
:database_category_experimental ;
:has_abbreviation "UniCarb-DB"^^xsd:string ;
:has_url_template "http://www.unicarb-db.org/structure/[?id?]"^^xsd:string ;
rdfs:label "UniCarb-DB"^^xsd:string ;
rdfs:seeAlso "http://www.unicarb-db.org"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "UniCarb-DB"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#database_unicarbkb
:database_unicarbkb rdf:type owl:NamedIndividual ,
:glycan_database ;
:has_category :database_category_bibliography ,
:database_category_cabohydrate_structure ,
:database_category_experimental ,
:database_category_glycoenzyme ,
:database_category_taxonomy ,
:database_category_tissue ;
:has_abbreviation "UniCarbKB"^^xsd:string ;
:has_url_template "http://www.unicarbkb.org/structure/[?id?]"^^xsd:string ;
rdfs:label "UniCarbKB"^^xsd:string ;
rdfs:seeAlso "http://www.unicarbkb.org"^^xsd:anyURI ;
<http://xmlns.com/foaf/0.1/name> "UniCarbKB"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#erythro
:erythro rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "erythro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_ce
:evidence_type_ce rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "ce"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_hplc
:evidence_type_hplc rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "hplc"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_lc
:evidence_type_lc rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "lc"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_lc_ms
:evidence_type_lc_ms rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "lc ms"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_lc_msms
:evidence_type_lc_msms rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "lc msms"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_ms
:evidence_type_ms rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "ms"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_msms
:evidence_type_msms rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "msms"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#evidence_type_nmr
:evidence_type_nmr rdf:type owl:NamedIndividual ,
:evidence_type ;
rdfs:label "nmr"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#furanose
:furanose rdf:type owl:NamedIndividual ,
:ring_type ;
rdfs:comment "A furanose is a five member ring structure containing four carbon atoms and one oxygen atom."^^xsd:string ;
rdfs:label "furanose"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#galacto
:galacto rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "galacto"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#galactotransferase_labeling
:galactotransferase_labeling rdf:type owl:NamedIndividual .
### http://purl.jp/bio/12/glyco/glycan#gluco
:gluco rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "gluco"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glutamic_acid
:glutamic_acid rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "glutamic acid"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glutamine
:glutamine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "glutamine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycero
:glycero rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "glycero"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#glycine
:glycine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "glycine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#gulo
:gulo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "gulo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#histidine
:histidine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "histidine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#hydrazine_release
:hydrazine_release rdf:type owl:NamedIndividual ,
:chemical_release .
### http://purl.jp/bio/12/glyco/glycan#ido
:ido rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "ido"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#isoleucine
:isoleucine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "isoleucine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#leucine
:leucine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "leucine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type_deoxy
:linkage_type_deoxy rdf:type owl:NamedIndividual ,
:linkage_type ;
rdfs:comment "The substituent is linked directly to the basetype backbone by replacing the OH group."^^xsd:string ;
rdfs:label "deoxy"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type_h_at_oh
:linkage_type_h_at_oh rdf:type owl:NamedIndividual ,
:linkage_type ;
rdfs:comment "A standard O-linked substituent, i.e. the substituent replaces the hydrogen of an OH group."^^xsd:string ;
rdfs:label "h at oh"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type_h_loss
:linkage_type_h_loss rdf:type owl:NamedIndividual ,
:linkage_type ;
rdfs:comment "The substituent is linked directly to the basetype backbone by replacing the hydrogen atom."^^xsd:string ;
rdfs:label "h loss"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type_r_config
:linkage_type_r_config rdf:type owl:NamedIndividual ,
:linkage_type ;
rdfs:comment "The substituent is linked directly to the basetype backbone by replacing a hydrogen atom at a terminal position, which would be non-chiral without the substituent, resulting in an R-configuration of the carbon."^^xsd:string ;
rdfs:label "r config"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#linkage_type_s_config
:linkage_type_s_config rdf:type owl:NamedIndividual ,
:linkage_type ;
rdfs:comment "Same as R_CONFIG, but resulting in an S-Configuration of the carbon."^^xsd:string ;
rdfs:label "s config"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lysine
:lysine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "lysine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#lyxo
:lyxo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "lyxo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#manno
:manno rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "manno"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#methionine
:methionine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "methionine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_analysis
:monosaccharide_analysis rdf:type owl:NamedIndividual ,
:evidence_type .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_amber_glycam
:monosaccharide_notation_scheme_amber_glycam rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment """Two-letter residue names used within the AMBER GLYCAM forcefield. For more information, see Carbohydrate Naming Convention in Glycam.
Note (1): Monosaccharide alias names in GLYCAM notation also encode linkage positions (in the first character of a three-letter-code residue name). These depend on the context of a residue within an oligosaccharide and thus are no monosaccharide properties. GLYCAM names stored in MonosaccharideDB refer to a terminal residue. The first character might have to be adjusted according to the specific context of a residue, i.e. in case other residues linked are to the given one.
Note (2): The GLYCAM notation is not yet supported by the notation parsing routines, i.e. GLYCAM alias names can be created, but not be read yet."""^^xsd:string ;
rdfs:label "amber glycam"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_bcsdb
:monosaccharide_notation_scheme_bcsdb rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "The notation used by the Russian BCSDB. For more information on this notation, see the description on the BCSDB homepage. "^^xsd:string ;
rdfs:label "bcsdb"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_carbbank
:monosaccharide_notation_scheme_carbbank rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "The CarbBank notation is based on the IUPAC extended notation. It is used by the Complex Carbohydrate Structure Database (CCSD), which is better known by the name of its query software \"carbbank\". CarbBank style notation forms the basis of several other notations, such as the Glycosciences.de scheme. "^^xsd:string ;
rdfs:label "carbbank"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_cfg
:monosaccharide_notation_scheme_cfg rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "The LinearCode notation used by the US Consortium for Functional Glycomics (CFG). "^^xsd:string ;
rdfs:label "cfg"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_glycoct
:monosaccharide_notation_scheme_glycoct rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "The nomenclature that is used by EUROCarbDB. For more information see www.eurocarbdb.org/recommendations/encoding/. "^^xsd:string ;
rdfs:label "glycoct"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_glycosciences_de
:monosaccharide_notation_scheme_glycosciences_de rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "The Notation used in the Glycosciences.de web portal. It is based on the CarbBank notation. "^^xsd:string ;
rdfs:label "glycosciences de"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_monosaccharidedb
:monosaccharide_notation_scheme_monosaccharidedb rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "MonosaccharideDB's internal notation format. Basetype and substituent names are the same as in GlycoCT, with the exception that 'anhydro' and 'lactone' modifications are included in the basetype here, while they are defined as substituents in GlycoCT. As most glycobiologist and also most carbohydrate databases consider a monosaccharide that contains substituents as one residue, they are defined in this way in MonosaccharideDB as well. "^^xsd:string ;
rdfs:label "monosaccharidedb"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#monosaccharide_notation_scheme_pdb
:monosaccharide_notation_scheme_pdb rdf:type owl:NamedIndividual ,
:monosaccharide_notation_scheme ;
rdfs:comment "The 3-letter residue names as used by the Protein Data Bank (PDB). Unlike most of the other notations, these names cannot be generated automatically by conversion routines but have to be assigned manually by the database administrators. Some PDB residue names that encode carbohydrate residues define disaccharides or oligosaccharides. These are not implemented in MonosaccharideDB, as the scope of this database is on monosaccharide residues. "^^xsd:string ;
rdfs:label "pdb"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_a
:ms_fragment_type_a rdf:type owl:NamedIndividual ,
:ms_fragment_type ;
rdfs:label "A"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_b
:ms_fragment_type_b rdf:type owl:NamedIndividual ,
:ms_fragment_type ;
rdfs:label "B"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_c
:ms_fragment_type_c rdf:type owl:NamedIndividual ,
:ms_fragment_type ;
rdfs:label "C"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_x
:ms_fragment_type_x rdf:type owl:NamedIndividual ,
:ms_fragment_type ;
rdfs:label "X"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_y
:ms_fragment_type_y rdf:type owl:NamedIndividual ,
:ms_fragment_type ;
rdfs:label "Y"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ms_fragment_type_z
:ms_fragment_type_z rdf:type owl:NamedIndividual ,
:ms_fragment_type ;
rdfs:label "Z"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#open
:open rdf:type owl:NamedIndividual ,
:ring_type ;
rdfs:comment "Open chain sugar that does not form a ring."^^xsd:string ;
rdfs:label "open"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#phenylalanine
:phenylalanine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "phenylalanine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#proline
:proline rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "proline"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#pyranose
:pyranose rdf:type owl:NamedIndividual ,
:ring_type ;
rdfs:comment "A Pyranose is any cyclic isomer that has a five carbons and one oxygen in a ring of six atoms."^^xsd:string ;
rdfs:label "pyranose"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#reductive_beta_elimination
:reductive_beta_elimination rdf:type owl:NamedIndividual ,
:chemical_release ;
rdfs:comment "Beta elimination that is used reducing a get for stabilize glycan."^^xsd:string ;
rdfs:label "reductive beta elimination"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute_average
:repeat_attribute_average rdf:type owl:NamedIndividual ,
:repeat_attribute ;
rdfs:label "average"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute_exact
:repeat_attribute_exact rdf:type owl:NamedIndividual ,
:repeat_attribute ;
rdfs:label "exact"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute_max
:repeat_attribute_max rdf:type owl:NamedIndividual ,
:repeat_attribute ;
rdfs:label "max"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute_min
:repeat_attribute_min rdf:type owl:NamedIndividual ,
:repeat_attribute ;
rdfs:label "min"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#repeat_attribute_unknown
:repeat_attribute_unknown rdf:type owl:NamedIndividual ,
:repeat_attribute ;
rdfs:label "unknown"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ribo
:ribo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "ribo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#ring_type_unknown
:ring_type_unknown rdf:type owl:NamedIndividual ,
:ring_type ;
rdfs:comment "A monosaccharide whose ring type is unknown."^^xsd:string ;
rdfs:label "unknown"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#selenocysteine
:selenocysteine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "selenocysteine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#serine
:serine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "serine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_acetyl
:substituent_type_acetyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "COCH3"^^xsd:string ;
rdfs:label "acetyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_amino
:substituent_type_amino rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NH2"^^xsd:string ;
rdfs:label "amino"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_bromo
:substituent_type_bromo rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "Br"^^xsd:string ;
rdfs:label "bromo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_chloro
:substituent_type_chloro rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "Cl"^^xsd:string ;
rdfs:label "chloro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_ethanolamine
:substituent_type_ethanolamine rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCH2CH2OH"^^xsd:string ;
rdfs:label "ethanolamine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_ethyl
:substituent_type_ethyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH2CH3"^^xsd:string ;
rdfs:label "ethyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_fluoro
:substituent_type_fluoro rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "F"^^xsd:string ;
rdfs:label "fluoro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_formyl
:substituent_type_formyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CHO"^^xsd:string ;
rdfs:label "formyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_glycolyl
:substituent_type_glycolyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "COCH2OH"^^xsd:string ;
rdfs:label "glycolyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_hydroxymethyl
:substituent_type_hydroxymethyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH2OH"^^xsd:string ;
rdfs:label "hydroxymethyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_imino
:substituent_type_imino rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NH"^^xsd:string ;
rdfs:label "imino"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_iodo
:substituent_type_iodo rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "I"^^xsd:string ;
rdfs:label "iodo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_methyl
:substituent_type_methyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH3"^^xsd:string ;
rdfs:label "methyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_acetyl
:substituent_type_n_acetyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCOCH3"^^xsd:string ;
rdfs:label "n acetyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_alanine
:substituent_type_n_alanine rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCOCHNH2CH3"^^xsd:string ;
rdfs:label "n alanine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_dimethyl
:substituent_type_n_dimethyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "N(CH3)2"^^xsd:string ;
rdfs:label "n dimethyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_ethyl
:substituent_type_n_ethyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCH2CH3"^^xsd:string ;
rdfs:label "n ethyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_formyl
:substituent_type_n_formyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCHO"^^xsd:string ;
rdfs:label "n formyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_glycolyl
:substituent_type_n_glycolyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NCOCH2OH"^^xsd:string ;
rdfs:label "n glycolyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_methyl
:substituent_type_n_methyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCH3"^^xsd:string ;
rdfs:label "n methyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_succinate
:substituent_type_n_succinate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NCOCH2CH2COOH"^^xsd:string ;
rdfs:label "n succinate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_sulfate
:substituent_type_n_sulfate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHSO3H"^^xsd:string ;
rdfs:label "n sulfate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_trifluoroacetyl
:substituent_type_n_trifluoroacetyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NHCOCF3"^^xsd:string ;
rdfs:label "n trifluoroacetyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_n_trimethyl
:substituent_type_n_trimethyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "N(CH3)3"^^xsd:string ;
rdfs:label "n trimethyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_nitrat
:substituent_type_nitrat rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "NO2"^^xsd:string ;
rdfs:label "nitrat"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_phosphate
:substituent_type_phosphate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "PO3H2"^^xsd:string ;
rdfs:label "phosphate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_r_lactate
:substituent_type_r_lactate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH3CHCOOH"^^xsd:string ;
rdfs:label "r lactate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_r_pyruvate
:substituent_type_r_pyruvate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH2CCOOH"^^xsd:string ;
rdfs:label "r pyruvate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_s_lactate
:substituent_type_s_lactate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH3CHCOOH"^^xsd:string ;
rdfs:label "s lactate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_s_methyl
:substituent_type_s_methyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "SCH3"^^xsd:string ;
rdfs:label "s methyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_s_pyruvate
:substituent_type_s_pyruvate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH2CCOOH"^^xsd:string ;
rdfs:label "s pyruvate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_seleno
:substituent_type_seleno rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "SeH"^^xsd:string ;
rdfs:label "seleno"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_sulfate
:substituent_type_sulfate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "SO3H"^^xsd:string ;
rdfs:label "sulfate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_telluro
:substituent_type_telluro rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "TeH"^^xsd:string ;
rdfs:label "telluro"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_thio
:substituent_type_thio rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "SH"^^xsd:string ;
rdfs:label "thio"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_trifluoroacetyl
:substituent_type_trifluoroacetyl rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "COCF3"^^xsd:string ;
rdfs:label "trifluoroacetyl"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_x_lactate
:substituent_type_x_lactate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH3CHCOOH"^^xsd:string ;
rdfs:label "x lactate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#substituent_type_x_pyruvate
:substituent_type_x_pyruvate rdf:type owl:NamedIndividual ,
:substituent_type ;
rdfs:comment "CH2CCOOH"^^xsd:string ;
rdfs:label "x pyruvate"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format_cfg
:symbol_format_cfg rdf:type owl:NamedIndividual ,
:symbol_format ;
rdfs:comment "A symbol is Consortium for Functional Glycomics (CFG) notation."^^xsd:string ;
rdfs:label "cfg"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format_cfg_bw
:symbol_format_cfg_bw rdf:type owl:NamedIndividual ,
:symbol_format ;
rdfs:comment "CFG symbol that is displaied black and white notation."^^xsd:string ;
rdfs:label "cfg bw"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format_text
:symbol_format_text rdf:type owl:NamedIndividual ,
:symbol_format ;
rdfs:comment "A glycan structure is displayed by text-only form."^^xsd:string ;
rdfs:label "text"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format_uoxf
:symbol_format_uoxf rdf:type owl:NamedIndividual ,
:symbol_format ;
rdfs:comment "A symbol is Oxford (UOXF) notations."^^xsd:string ;
rdfs:label "uoxf"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#symbol_format_uoxf_bw
:symbol_format_uoxf_bw rdf:type owl:NamedIndividual ,
:symbol_format ;
rdfs:comment "UOXF symbol that is displayed black and white notation."^^xsd:string ;
rdfs:label "uoxf bw"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#synthetic_type_chemical
:synthetic_type_chemical rdf:type owl:NamedIndividual ,
:synthetic_type ;
rdfs:comment "Chemical synthesis that various protecting group manipulations used in the context of glycan synthesis."^^xsd:string ;
rdfs:label "chemical"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#synthetic_type_chemoenzymatic
:synthetic_type_chemoenzymatic rdf:type owl:NamedIndividual ,
:synthetic_type ;
rdfs:comment "Relying on a hybrid of chemical and enzymatic steps that typically begins with chemical synthesis and ends with enzymatic extension."^^xsd:string ;
rdfs:label "chemoenzymatic"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#synthetic_type_enzymatic
:synthetic_type_enzymatic rdf:type owl:NamedIndividual ,
:synthetic_type ;
rdfs:comment "Employing glycosyltransferases and glycosidases in a synthetic schema."^^xsd:string ;
rdfs:label "enzymatic"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#talo
:talo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "talo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#threo
:threo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "threo"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#threonine
:threonine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "threonine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#trifulfonic_acid
:trifulfonic_acid rdf:type owl:NamedIndividual ,
:Label ;
rdfs:comment "Glycan labelled with 9-aminopyrene-1,3,6-trifulfonic acid" ;
rdfs:label "9-aminopyrene-1,3,6-trifulfonic acid" .
### http://purl.jp/bio/12/glyco/glycan#trisulfonic_acid
:trisulfonic_acid rdf:type owl:NamedIndividual ,
:Label ;
rdfs:comment "Glycan labelled with 8-aminonaphthalene-1,3,6-trisulfonic acid" ;
rdfs:label "8-aminonaphthalene-1,3,6-trisulfonic acid" .
### http://purl.jp/bio/12/glyco/glycan#tryptophan
:tryptophan rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "tryptophan"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#tyrosine
:tyrosine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "tyrosine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#uoxf
:uoxf rdf:type owl:NamedIndividual ,
:carbohydrate_format .
### http://purl.jp/bio/12/glyco/glycan#uplc
:uplc rdf:type owl:NamedIndividual ,
:evidence_type .
### http://purl.jp/bio/12/glyco/glycan#valine
:valine rdf:type owl:NamedIndividual ,
:amino_acid ;
:has_absolute_configuration :absolute_configuration_laevus ;
rdfs:label "valine"^^xsd:string .
### http://purl.jp/bio/12/glyco/glycan#xylo
:xylo rdf:type owl:NamedIndividual ,
:relative_configuration ;
rdfs:label "xylo"^^xsd:string .
### Generated by the OWL API (version 4.2.6.20160910-2108) https://github.com/owlcs/owlapi