]>
#MAMO_0000003
http://en.wikipedia.org/wiki/Mathematical_model
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Description of a system using mathematical concepts and language. The model is composed of a set of variables and a set of equations that establish relationships between the variables.
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A set of ordinary differential equation describing a physical process.
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mathematical model
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http://en.wikipedia.org/wiki/Statistical_model
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Model that describes how one or more random variables are related to one or more random variables.
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The relationship between the size and the age.
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statistical model
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Model that describe a system with quantified variables.
#MAMO_0000005
A set of ordinary differential equation describing a physical process.
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quantitative model
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Model that describes a system with symbolic variables.
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A set of logical relationship describing the evolution of boolean variables.
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qualitative model
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http://en.wikipedia.org/wiki/Dynamic_model
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dynamical model
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Model that describes the temporal evolution of variables.
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dynamic model
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http://en.wikipedia.org/wiki/Steady_state_%28chemistry%29
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Model which describes a system where the state variable values do not vary.
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steady-state model
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http://en.wikipedia.org/wiki/Flux_balance_analysis
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Application of linear programming to biological systems that uses the stoichiometric coefficients for each reaction in the system as the set of constraints for the optimization. Additionally, FBA requires the assumption of biological steady state.
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flux balance analysis model
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http://en.wikipedia.org/wiki/Variable_%28mathematics%29
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Value that may change within the scope of a given model or set of operations.
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variable
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Synonyms: input variable
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http://en.wikipedia.org/wiki/Dependent_and_independent_variables;
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http://www.ncsu.edu/labwrite/po/independentvar.htm
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variable which is controlled in an experiment, and that affects other variables during the experiment. An independent variable does not depend on other variables of the model.
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independent variable
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Synonyms: output variable
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http://en.wikipedia.org/wiki/Dependent_and_independent_variables;
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http://www.ncsu.edu/labwrite/po/dependentvar.htm
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variable which is measured in an experiment, and that is affected during the experiment. A dependent variable depends on other variables
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Example: in an experiment one controls x and measure y, with a relationship y = ax+b, y is depending on x.
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dependent variable
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http://en.wikipedia.org/wiki/Pharmacokinetics
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Model dedicated to the determination of the fate of substances administered externally to a living organism. Pharmacokinetics models are divided into several areas including the extent and rate of absorption, distribution, metabolism and excretion (ADME) to which Liberation is sometimes added (LADME).
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pharmacokinetics model
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http://en.wikipedia.org/wiki/Pharmacodynamics
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Models dedicated to the study of the biochemical and physiological effects of drugs on the body or on microorganisms or parasites within or on the body and the mechanisms of drug action and the relationship between drug concentration and effect.
#MAMO_0000020
pharmacodynamics model
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http://en.wikipedia.org/wiki/Multiphysics
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Multiphysics treats simulations that involve multiple physical models or multiple simultaneous physical phenomena. For example, combining chemical kinetics and fluid mechanics or combining finite elements with molecular dynamics. Multiphysics typically involves solving coupled systems of partial differential equations.
#MAMO_0000021
multiphysics model
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Rule-based modeling is especially effective in cases where the rule-set is significantly simpler than the model it implies, meaning that the model is a repeated manifestation of a limited number of patterns.
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http://en.wikipedia.org/wiki/Rule-based_modeling#For_biochemical_systems
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Model that uses a set of rules used to describe other model instances. The rule-set can be used to create a model, or suitable tools can use a rule-set in place of a model.
#MAMO_0000022
rule-based model
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http://en.wikipedia.org/wiki/Computational_model
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mathematical model that requires computer simulations to study the behavior of a complex system. The system under study is often a complex nonlinear system for which simple, intuitive analytical solutions are not readily available. Rather than deriving a mathematical analytical solution to the problem, experimentation with the model is done by adjusting the parameters of the system in the computer, and studying the differences in the outcome of the experiments.
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weather forecasting models, earth simulator models, flight simulator models, molecular protein folding models, neural network models.
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computational model
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Synonym: multi-agent model
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http://en.wikipedia.org/wiki/Agent-based_model
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model simulating the actions and interactions of autonomous agents (both individual or collective entities such as organizations or groups) with a view to assessing their effects on the system as a whole
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agent-based model
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http://en.wikipedia.org/wiki/Petri_net
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directed bipartite graph, in which the nodes represent transitions (i.e. events that may occur, signified by bars) and places (i.e. conditions, signified by circles). The directed arcs describe which places are pre- and/or postconditions for which transitions (signified by arrows) occurs.
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Petri net
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http://en.wikipedia.org/wiki/Computational_neuroscience
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Computational Neuroscience emphasizes descriptions of functional and biologically realistic neurons (and neural systems) and their physiology and dynamics. These models capture the essential features of the biological system at multiple spatial-temporal scales, from membrane currents, protein, and chemical coupling to network oscillations, columnar and topographic architecture, and learning and memory. These computational models are used to frame hypotheses that can be directly tested by current or future biological and/or psychological experiments.
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computational Neuroscience model
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information obtained about a system by the application of an analysis procedure to a model of this system
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timecourse of a concentation; EC50
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readout
http://www.w3.org/2004/02/skos/core#altLabel
The range of skos:altLabel is the class of RDF plain literals.
http://www.w3.org/2004/02/skos/core#altLabel
skos:prefLabel, skos:altLabel and skos:hiddenLabel are pairwise disjoint properties.
http://www.w3.org/2004/02/skos/core#altLabel
http://www.w3.org/2004/02/skos/core
http://www.w3.org/2004/02/skos/core#altLabel
alternative label
http://www.w3.org/2004/02/skos/core#altLabel
An alternative lexical label for a resource.
http://www.w3.org/2004/02/skos/core#altLabel
Acronyms, abbreviations, spelling variants, and irregular plural/singular forms may be included among the alternative labels for a concept. Mis-spelled terms are normally included as hidden labels (see skos:hiddenLabel).
http://www.w3.org/2004/02/skos/core#definition
http://www.w3.org/2004/02/skos/core
http://www.w3.org/2004/02/skos/core#definition
definition
http://www.w3.org/2004/02/skos/core#definition
A statement or formal explanation of the meaning of a concept.
http://www.w3.org/2004/02/skos/core#example
http://www.w3.org/2004/02/skos/core
http://www.w3.org/2004/02/skos/core#example
example
http://www.w3.org/2004/02/skos/core#example
An example of the use of a concept.
http://www.w3.org/2004/02/skos/core#hiddenLabel
skos:prefLabel, skos:altLabel and skos:hiddenLabel are pairwise disjoint properties.
http://www.w3.org/2004/02/skos/core#hiddenLabel
http://www.w3.org/2004/02/skos/core
http://www.w3.org/2004/02/skos/core#hiddenLabel
hidden label
http://www.w3.org/2004/02/skos/core#hiddenLabel
A lexical label for a resource that should be hidden when generating visual displays of the resource, but should still be accessible to free text search operations.
http://www.w3.org/2004/02/skos/core#hiddenLabel
The range of skos:hiddenLabel is the class of RDF plain literals.
http://www.w3.org/2004/02/skos/core#prefLabel
A resource has no more than one value of skos:prefLabel per language tag, and no more than one value of skos:prefLabel without language tag.
http://www.w3.org/2004/02/skos/core#prefLabel
The range of skos:prefLabel is the class of RDF plain literals.
http://www.w3.org/2004/02/skos/core#prefLabel
skos:prefLabel, skos:altLabel and skos:hiddenLabel are pairwise
disjoint properties.
http://www.w3.org/2004/02/skos/core#prefLabel
http://www.w3.org/2004/02/skos/core
http://www.w3.org/2004/02/skos/core#prefLabel
preferred label
http://www.w3.org/2004/02/skos/core#prefLabel
The preferred lexical label for a resource, in a given language.