@ Ontology Change Report @ First ontology URI: http://anobase.vectorbase.org/mirnao/mirnao.owl @ Second ontology URI: http://anobase.vectorbase.org/mirnao/mirnao.owl @ File Written at 2013.12.10 at 07:02:07 PST @ Number of classes changed: 369 @ Number of classes added: 349 @Classes modified from previous --- Class Changed: http://purl.obolibrary.org/obo/SO_0000596 label: H/ACA Box snoRNA Primary Transcript - SubClassOf('H/ACA Box snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000851 label: CDS Region - SubClassOf('CDS Region' ObjectSomeValueFrom('part_of' 'CDS')) - SubClassOf('CDS Region' 'mRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000321 label: mRNA with Plus 1 Frameshift - SubClassOf('mRNA with Plus 1 Frameshift' 'mRNA with Frameshift') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000586 label: tmRNA Primary Transcript - SubClassOf('tmRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000282 label: mRNA with Minus 1 Frameshift - SubClassOf('mRNA with Minus 1 Frameshift' 'mRNA with Frameshift') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000214 label: Aspartic acid tRNA Primary Transcript - SubClassOf('Aspartic acid tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000603 label: Group II Intron - SubClassOf('Group II Intron' 'Autocatalutically Spliced Intron') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6157 label: Platyhelminthes + SubClassOf('Platyhelminthes' Animal) - SubClassOf('Platyhelminthes' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/RNAO_0000099 label: Internal Loop + SubClassOf('Internal Loop' SO_0000122) - SubClassOf('Internal Loop' 'RNA Sequence Secondary Structure') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001265 label: mRNA Recoded by Codon Redefinition - SubClassOf('mRNA Recoded by Codon Redefinition' 'Recoded mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001384 label: CDS Fragment - SubClassOf('CDS Fragment' 'CDS') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000315 label: TSS - SubClassOf('TSS' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000606 label: Editing Domain - SubClassOf('Editing Domain' 'Edited Transcript Feature') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001287 label: Distant 3' Recoding SIgnal - SubClassOf('Distant 3' Recoding SIgnal' '3' Recoding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001279 label: 3' Stem-loop Structure - SubClassOf('3' Stem-loop Structure' '3' Recoding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001503 label: Processed Transcript - SubClassOf('Processed Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001213 label: Group III Intron - SubClassOf('Group III Intron' 'Autocatalutically Spliced Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000276 label: miRNA - SubClassOf('miRNA' ObjectSomeValueFrom('derives_from' 'pri-miRNA')) - SubClassOf('miRNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000392 label: U2 snRNA - SubClassOf('U2 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000885 label: Stop Codon Redefined as Selenocysteine - SubClassOf('Stop Codon Redefined as Selenocysteine' 'Stop Codon Read Through') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000260 label: Glutamyl tRNA - SubClassOf('Glutamyl tRNA' 'tRNA') - SubClassOf('Glutamyl tRNA' ObjectSomeValueFrom('derives_from' 'Glutamine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000001 label: Region - SubClassOf('Region' 'Fiat Object Part') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000716 label: Dicistronic mRNA - SubClassOf('Dicistronic mRNA' 'Polycistronic mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001463 label: Linc RNA - SubClassOf('Linc RNA' 'Lnc RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000555 label: 5' Clip - SubClassOf('5' Clip' 'Clip') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000640 label: External Transcribed Spacer Region - SubClassOf('External Transcribed Spacer Region' 'Transcribed Spacer Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000833 label: Transcript Region - SubClassOf('Transcript Region' 'Biological Region') - SubClassOf('Transcript Region' ObjectSomeValueFrom('part_of' 'Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000602 label: Guide RNA - SubClassOf('Guide RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001175 label: CCA Tail - SubClassOf('CCA Tail' 'tRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000209 label: rRNA Primary Transcript - SubClassOf('rRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000122 label: RNA Sequence Secondary Structure - SubClassOf('RNA Sequence Secondary Structure' 'Collection of Nucleotides Residues') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000203 label: UTR - SubClassOf('UTR' 'mRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000405 label: Y RNA - SubClassOf('Y RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000327 label: Coding End - SubClassOf('Coding End' 'CDS Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000990 label: Class I RNA - SubClassOf('Class I RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000409 label: Binding Site - SubClassOf('Binding Site' 'Biological Region') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6340 label: Annelida + SubClassOf('Annelida' Animal) - SubClassOf('Annelida' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000587 label: Group I Intron - SubClassOf('Group I Intron' 'Autocatalutically Spliced Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000211 label: Alanine tRNA Primary Transcript - SubClassOf('Alanine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000198 label: Noncoding Exon - SubClassOf('Noncoding Exon' 'Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0005856 label: Selenocysteine tRNA Primary Transcript - SubClassOf('Selenocysteine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001177 label: T Loop - SubClassOf('T Loop' 'tRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000262 label: Histidyl tRNA - SubClassOf('Histidyl tRNA' ObjectSomeValueFrom('derives_from' 'Histidine tRNA Primary Transcript')) - SubClassOf('Histidyl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000191 label: Interior Intron - SubClassOf('Interior Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/RNAO_0000095 label: Paired Region + SubClassOf('Paired Region' SO_0000122) - SubClassOf('Paired Region' 'RNA Sequence Secondary Structure') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000381 label: Group IIA Intron - SubClassOf('Group IIA Intron' 'Group II Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000231 label: snRNA Primary Transcript - SubClassOf('snRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001903 label: Intronic lncRNA - SubClassOf('Intronic lncRNA' 'Lnc RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000631 label: Polycistronic Primary Transcript - SubClassOf('Polycistronic Primary Transcript' 'Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001251 label: CDS Supported by Sequence SImilarity Data - SubClassOf('CDS Supported by Sequence SImilarity Data' 'CDS Predicted') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001035 label: piRNA - SubClassOf('piRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000395 label: U5 snRNA - SubClassOf('U5 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001419 label: cis Splice Site - SubClassOf('cis Splice Site' 'Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000852 label: Exon Region - SubClassOf('Exon Region' ObjectSomeValueFrom('part_of' 'Exon')) - SubClassOf('Exon Region' 'Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000841 label: Spliceosomal Intron Region - SubClassOf('Spliceosomal Intron Region' ObjectSomeValueFrom('part_of' 'Spliceosomal Intron')) - SubClassOf('Spliceosomal Intron Region' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000230 label: Valine tRNA Primary Transcript - SubClassOf('Valine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000483 label: Noncoding Primary Transcript - SubClassOf('Noncoding Primary Transcript' 'Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000557 label: 3' Clip - SubClassOf('3' Clip' 'Clip') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000279 label: Transcript Bound by Protein - SubClassOf('Transcript Bound by Protein' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000634 label: Polycistronic mRNA - SubClassOf('Polycistronic mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000448 label: 3' UTR Intron - SubClassOf('3' UTR Intron' 'UTR Intron') --- Class Changed: http://purl.org/obo/owl/GO#GO_0035198 label: miRNA Binding + SubClassOf('miRNA Binding' ObjectSomeValueFrom(hasAgent SO_0000276)) - SubClassOf('miRNA Binding' ObjectSomeValueFrom('has_agent' 'miRNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000393 label: U4 snRNA - SubClassOf('U4 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000407 label: rRNA 18S - SubClassOf('rRNA 18S' 'Small Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001180 label: AU Rich Element - SubClassOf('AU Rich Element' 'UTR Region') - SubClassOf('AU Rich Element' ObjectSomeValueFrom('part_of' 'Three Prime UTR')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000636 label: Spliced Leader RNA - SubClassOf('Spliced Leader RNA' 'Primary Transcript Region') - SubClassOf('Spliced Leader RNA' ObjectSomeValueFrom('part_of' 'Mini Exon Donor RNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001239 label: Minor TSS - SubClassOf('Minor TSS' 'TSS') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000633 label: Monocistronic mRNA - SubClassOf('Monocistronic mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001429 label: DNA Binding SIte - SubClassOf('DNA Binding SIte' 'Nucleotide Binding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000638 label: Transcribed Spacer Region - SubClassOf('Transcribed Spacer Region' 'rRNA Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001654 label: Nucleotide to Protein Binding Site - SubClassOf('Nucleotide to Protein Binding Site' 'Protein Binding SIte') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001751 label: SL6 Acceptor Site - SubClassOf('SL6 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000147 label: Exon - SubClassOf('Exon' 'Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000384 label: OxyS RNA - SubClassOf('OxyS RNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000197 label: Three Prime Coding Exon Coding Region - SubClassOf('Three Prime Coding Exon Coding Region' 'Coding Region of Exon') - SubClassOf('Three Prime Coding Exon Coding Region' ObjectSomeValueFrom('part_of' 'Three Prime Coding Exon')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000267 label: Phenylalanyl tRNA - SubClassOf('Phenylalanyl tRNA' 'tRNA') - SubClassOf('Phenylalanyl tRNA' ObjectSomeValueFrom('derives_from' 'Phenylalanine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001800 label: tasiRNA - SubClassOf('tasiRNA' 'ncRNA') - SubClassOf('tasiRNA' ObjectSomeValueFrom('derives_from' 'tasiRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000582 label: rRNA cleavage snoRNA Primary Transcript - SubClassOf('rRNA cleavage snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000484 label: Three Prime Coding Exon Noncoding Region - SubClassOf('Three Prime Coding Exon Noncoding Region' ObjectSomeValueFrom('part_of' 'Three Prime Noncoding Exon')) - SubClassOf('Three Prime Coding Exon Noncoding Region' 'Noncoding Region of Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001274 label: SECIS Element - SubClassOf('SECIS Element' 'Recoding Stimulatory Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000374 label: Ribozyme - SubClassOf('Ribozyme' 'Enzymatic RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001260 label: Internal Shine Dalgarno Sequence - SubClassOf('Internal Shine Dalgarno Sequence' 'Recoding Stimulatory Region') - SubClassOf('Internal Shine Dalgarno Sequence' 'Internal Ribosome Entry Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001036 label: Arginyl tRNA - SubClassOf('Arginyl tRNA' 'tRNA') - SubClassOf('Arginyl tRNA' ObjectSomeValueFrom('derives_from' 'Arginine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001001 label: rRNA 23S - SubClassOf('rRNA 23S' 'Large Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000379 label: GcvB RNA - SubClassOf('GcvB RNA' 'DsrA RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000210 label: tRNA Primary Transcript - SubClassOf('tRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001176 label: DHU Loop - SubClassOf('DHU Loop' 'tRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000676 label: Canonical 3' Splice Site - SubClassOf('Canonical 3' Splice Site' '3' cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000770 label: tmRNA Acceptor Piece - SubClassOf('tmRNA Acceptor Piece' 'tmRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000632 label: Monocistronic Primary Transcript - SubClassOf('Monocistronic Primary Transcript' 'Monocistronic Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000188 label: Intron - SubClassOf('Intron' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000403 label: U14 snoRNA - SubClassOf('U14 snoRNA' ObjectSomeValueFrom('derives_from' 'U14 snoRNA Primary Transcript')) - SubClassOf('U14 snoRNA' 'C/D Box snoRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000404 label: Vault RNA - SubClassOf('Vault RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001801 label: tasiRNA Primary Transcript - SubClassOf('tasiRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000838 label: rRNA Primary Transcript Region - SubClassOf('rRNA Primary Transcript Region' 'Primary Transcript Region') - SubClassOf('rRNA Primary Transcript Region' ObjectSomeValueFrom('part_of' 'rRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000004 label: Interior Coding Exon - SubClassOf('Interior Coding Exon' 'Coding Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001243 label: miRNA Primary Transcript Region - SubClassOf('miRNA Primary Transcript Region' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/RNAO_0000098 label: Terminal Loop + SubClassOf('Terminal Loop' SO_0000122) - SubClassOf('Terminal Loop' 'RNA Sequence Secondary Structure') --- Class Changed: http://purl.obolibrary.org/obo/CHEBI_36080 label: Protein + SubClassOf('Protein' ObjectSomeValueFrom(hasRole 'Transcription Factor')) - SubClassOf('Protein' ObjectSomeValueFrom('has_role' 'Transcription Factor')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000998 label: Recursive Splice Site - SubClassOf('Recursive Splice Site' 'cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001014 label: Intron Domain - SubClassOf('Intron Domain' 'Primary Transcript Region') - SubClassOf('Intron Domain' ObjectSomeValueFrom('part_of' 'Intron')) --- Class Changed: http://purl.org/obo/owl/GO#GO_0010608 label: Posttranscriptional Regulation of Gene Expression + SubClassOf('Posttranscriptional Regulation of Gene Expression' ObjectSomeValueFrom(precededBy 'Transcription, DNA-dependent')) - SubClassOf('Posttranscriptional Regulation of Gene Expression' ObjectSomeValueFrom('preceded_by' 'Transcription, DNA-dependent')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001215 label: Coding Region of Exon - SubClassOf('Coding Region of Exon' 'Exon Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000221 label: Leucine tRNA Primary Transcript - SubClassOf('Leucine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_7586 label: Echinodermata + SubClassOf('Echinodermata' Animal) - SubClassOf('Echinodermata' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000444 label: Three Prime Noncoding Exon - SubClassOf('Three Prime Noncoding Exon' 'Noncoding Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000665 label: Monocistronic Transcript - SubClassOf('Monocistronic Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001247 label: Orphan CDS - SubClassOf('Orphan CDS' 'CDS Predicted') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000446 label: UTR Intron - SubClassOf('UTR Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000164 label: 3' cis Splice Site - SubClassOf('3' cis Splice Site' 'cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_10012177 label: 3' Recoding Site - SubClassOf('3' Recoding Site' 'Recoding Stimulatory Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000612 label: Polypirimidine Tract - SubClassOf('Polypirimidine Tract' 'Spliceosomal Intron Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001212 label: Plus 2 Translational Frameshift - SubClassOf('Plus 2 Translational Frameshift' 'Translational Frameshift') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001280 label: 5' Recoding Site - SubClassOf('5' Recoding Site' 'Recoding Stimulatory Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000646 label: siRNA - SubClassOf('siRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000929 label: Edited mRNA - SubClassOf('Edited mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001246 label: miRNA Loop - SubClassOf('miRNA Loop' 'miRNA Primary Transcript Region') - SubClassOf('miRNA Loop' ObjectSomeValueFrom('part_of' 'pre-miRNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_1001249 label: CDS Supported by Domain Match Data - SubClassOf('CDS Supported by Domain Match Data' 'CDS Supported by Sequence SImilarity Data') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000883 label: Stop Codon Read Through - SubClassOf('Stop Codon Read Through' 'Recoded Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000454 label: rasiRNA - SubClassOf('rasiRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001245 label: miRNA Stem - SubClassOf('miRNA Stem' 'miRNA Primary Transcript Region') - SubClassOf('miRNA Stem' ObjectSomeValueFrom('part_of' 'pre-miRNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000229 label: Tyrosine tRNA Primary Transcript - SubClassOf('Tyrosine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000708 label: SL1 Acceptor Site - SubClassOf('SL1 Acceptor Site' 'Trans Splice Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001214 label: Noncoding Region of Exon - SubClassOf('Noncoding Region of Exon' 'Exon Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001757 label: SL12 Acceptor Site - SubClassOf('SL12 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000323 label: Coding Start - SubClassOf('Coding Start' 'CDS Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001282 label: UAG Stop Codon Signal - SubClassOf('UAG Stop Codon Signal' 'Stop Codon Signal') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000862 label: Capped mRNA - SubClassOf('Capped mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000611 label: Branch Site - SubClassOf('Branch Site' 'Spliceosomal Intron Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000595 label: C/D Box snoRNA Primary Transcript - SubClassOf('C/D Box snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001178 label: Pyrrolysine tRNA Primary Transcript - SubClassOf('Pyrrolysine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000398 label: U11 snRNA - SubClassOf('U11 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001173 label: Anticodon Loop - SubClassOf('Anticodon Loop' 'tRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000397 label: U6atac snRNA - SubClassOf('U6atac snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000590 label: SRP RNA - SubClassOf('SRP RNA' 'ncRNA') - SubClassOf('SRP RNA' ObjectSomeValueFrom('derives_from' 'SRP RNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_1001286 label: 3' Repeat Recoding Signal - SubClassOf('3' Repeat Recoding Signal' '3' Recoding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000233 label: Mature Transcript - SubClassOf('Mature Transcript' 'Transcript') - SubClassOf('Mature Transcript' ObjectSomeValueFrom('derives_from' 'Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001174 label: Anticodon - SubClassOf('Anticodon' ObjectSomeValueFrom('part_of' 'Anticodon Loop')) - SubClassOf('Anticodon' 'tRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000212 label: Arginine tRNA Primary Transcript - SubClassOf('Arginine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000666 label: Mobile Intron - SubClassOf('Mobile Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000884 label: Stop Codon Redefined as Pyrrolysine - SubClassOf('Stop Codon Redefined as Pyrrolysine' 'Stop Codon Read Through') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000215 label: Cysteine tRNA Primary Transcript - SubClassOf('Cysteine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001869 label: Transposable Element CDS - SubClassOf('Transposable Element CDS' 'CDS') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000873 label: Edited Transcript - SubClassOf('Edited Transcript' ObjectSomeValueFrom('has_part' 'Anchor Binding Site')) - SubClassOf('Edited Transcript' 'Transcript') - SubClassOf('Edited Transcript' ObjectSomeValueFrom('guided_by' 'Guide RNA')) --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6217 label: Nemertea + SubClassOf('Nemertea' Animal) - SubClassOf('Nemertea' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001002 label: rRNA 25S - SubClassOf('rRNA 25S' 'Large Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000196 label: Five Prime Coding Exon Coding Region - SubClassOf('Five Prime Coding Exon Coding Region' ObjectSomeValueFrom('part_of' 'Five Prime Coding Exon')) - SubClassOf('Five Prime Coding Exon Coding Region' 'Coding Region of Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000644 label: Antisense RNA - SubClassOf('Antisense RNA' 'ncRNA') - SubClassOf('Antisense RNA' ObjectSomeValueFrom('derives_from' 'Antisense Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000734 label: Exemplar mRNA - SubClassOf('Exemplar mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000769 label: tmRNA Coding Piece - SubClassOf('tmRNA Coding Piece' 'tmRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000303 label: Clip - SubClassOf('Clip' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001264 label: mRNA Recoded by Translation Bypass - SubClassOf('mRNA Recoded by Translation Bypass' 'Recoded mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000225 label: Proline tRNA Primary Transcript - SubClassOf('Proline tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001187 label: Alternatively Spliced Transcript - SubClassOf('Alternatively Spliced Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_7711 label: Chordata + SubClassOf('Chordata' Animal) - SubClassOf('Chordata' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000579 label: Edited Transcript Feature - SubClassOf('Edited Transcript Feature' 'Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000552 label: Shine Dalgarno Sequence - SubClassOf('Shine Dalgarno Sequence' 'Ribosome Entry Site') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6231 label: Nematoda + SubClassOf('Nematoda' Animal) - SubClassOf('Nematoda' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000220 label: Isoleucine tRNA Primary Transcript - SubClassOf('Isoleucine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000242 label: Untranslated Region Polycistronic mRNA - SubClassOf('Untranslated Region Polycistronic mRNA' 'UTR') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000655 label: ncRNA - SubClassOf('ncRNA' 'Mature Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000607 label: Unedited Region - SubClassOf('Unedited Region' 'Edited Transcript Feature') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000385 label: RNase MRP RNA - SubClassOf('RNase MRP RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001016 label: Internal Guide Sequence - SubClassOf('Internal Guide Sequence' ObjectSomeValueFrom('part_of' 'Group I Intron')) - SubClassOf('Internal Guide Sequence' 'Intron Domain') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001420 label: Trans Splice Site - SubClassOf('Trans Splice Site' 'Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001172 label: tRNA Region - SubClassOf('tRNA Region' ObjectSomeValueFrom('part_of' 'tRNA')) - SubClassOf('tRNA Region' 'Mature Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001749 label: SL4 Acceptor Site - SubClassOf('SL4 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000681 label: Aberrant Processed Transcript - SubClassOf('Aberrant Processed Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000387 label: RprA RNA - SubClassOf('RprA RNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000410 label: Protein Binding SIte - SubClassOf('Protein Binding SIte' 'Binding Site') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6656 label: Arthropoda + SubClassOf('Arthropoda' Animal) - SubClassOf('Arthropoda' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001269 label: 4bp Start Codon - SubClassOf('4bp Start Codon' 'Non-canonical Start Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000653 label: rRNA 28S - SubClassOf('rRNA 28S' 'Large Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001171 label: rRNA 21S - SubClassOf('rRNA 21S' 'Large Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000227 label: Threonine tRNA Primary Transcript - SubClassOf('Threonine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000145 label: Recoded Codon - SubClassOf('Recoded Codon' 'Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000836 label: mRNA Region - SubClassOf('mRNA Region' ObjectSomeValueFrom('part_of' 'mRNA')) - SubClassOf('mRNA Region' 'Mature Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000594 label: H/ACA Box snoRNA - SubClassOf('H/ACA Box snoRNA' ObjectSomeValueFrom('derives_from' 'H/ACA Box snoRNA Primary Transcript')) - SubClassOf('H/ACA Box snoRNA' 'snoRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000630 label: Upstream AUG Codon - SubClassOf('Upstream AUG Codon' 'UTR Region') - SubClassOf('Upstream AUG Codon' ObjectSomeValueFrom('part_of' 'UTR')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000213 label: Asparagine tRNA Primary Transcript - SubClassOf('Asparagine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001187 label: Pseudouridylation Guide snoRNA - SubClassOf('Pseudouridylation Guide snoRNA' 'H/ACA Box snoRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000588 label: Autocatalutically Spliced Intron - SubClassOf('Autocatalutically Spliced Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000673 label: Transcript - SubClassOf('Transcript' 'RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000679 label: Non-canonical 5' Splice SIte - SubClassOf('Non-canonical 5' Splice SIte' '5' cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000271 label: Tryptophanyl tRNA - SubClassOf('Tryptophanyl tRNA' 'tRNA') - SubClassOf('Tryptophanyl tRNA' ObjectSomeValueFrom('derives_from' 'Tryptophan tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001210 label: Translational Frameshift - SubClassOf('Translational Frameshift' 'mRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000593 label: C/D Box snoRNA - SubClassOf('C/D Box snoRNA' 'snoRNA') - SubClassOf('C/D Box snoRNA' ObjectSomeValueFrom('derives_from' 'C/D Box snoRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001750 label: SL5 Acceptor Site - SubClassOf('SL5 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000204 label: Five Prime UTR - SubClassOf('Five Prime UTR' 'UTR') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000370 label: Small Regulatory ncRNA - SubClassOf('Small Regulatory ncRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000243 label: Internal Ribosome Entry Site - SubClassOf('Internal Ribosome Entry Site' 'Ribosome Entry Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0005837 label: U14 snoRNA Primary Transcript - SubClassOf('U14 snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000192 label: 3' Intron - SubClassOf('3' Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000253 label: tRNA - SubClassOf('tRNA' 'ncRNA') - SubClassOf('tRNA' ObjectSomeValueFrom('derives_from' 'tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000316 label: CDS - SubClassOf('CDS' 'mRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_33208 label: Metazoa - SubClassOf('Metazoa' 'Cellular Organism') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000930 label: Guide RNA Region - SubClassOf('Guide RNA Region' ObjectSomeValueFrom('part_of' 'Guide RNA')) - SubClassOf('Guide RNA Region' 'Mature Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000258 label: Cysteinyl tRNA - SubClassOf('Cysteinyl tRNA' ObjectSomeValueFrom('derives_from' 'Cysteine tRNA Primary Transcript')) - SubClassOf('Cysteinyl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000295 label: U12 Intron - SubClassOf('U12 Intron' 'Spliceosomal Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000226 label: Serine tRNA Primary Transcript - SubClassOf('Serine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000278 label: Transcript Bound by Nucleic Acid - SubClassOf('Transcript Bound by Nucleic Acid' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000932 label: pre-edited mRNA - SubClassOf('pre-edited mRNA' 'Protein Coding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001034 label: Mirtron - SubClassOf('Mirtron' 'Intron Domain') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000320 label: Intronic Splice Enhancer - SubClassOf('Intronic Splice Enhancer' 'Spliceosomal Intron Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001261 label: Recoded mRNA - SubClassOf('Recoded mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000261 label: Glycyl tRNA - SubClassOf('Glycyl tRNA' 'tRNA') - SubClassOf('Glycyl tRNA' ObjectSomeValueFrom('derives_from' 'Glycine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000228 label: Tryptophan tRNA Primary Transcript - SubClassOf('Tryptophan tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000382 label: Group IIB Intron - SubClassOf('Group IIB Intron' 'Group II Intron') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6447 label: Mollusca + SubClassOf('Mollusca' Animal) - SubClassOf('Mollusca' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001182 label: Iron Responsive Element - SubClassOf('Iron Responsive Element' ObjectSomeValueFrom('part_of' 'UTR')) - SubClassOf('Iron Responsive Element' 'UTR Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000650 label: Small Subunit rRNA - SubClassOf('Small Subunit rRNA' ObjectSomeValueFrom('derives_from' 'rRNA Small Subunit Primary Transcript')) - SubClassOf('Small Subunit rRNA' 'rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000584 label: tmRNA - SubClassOf('tmRNA' 'Small Regulatory ncRNA') - SubClassOf('tmRNA' ObjectSomeValueFrom('derives_from' 'tmRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000766 label: Pyrrolysyl tRNA - SubClassOf('Pyrrolysyl tRNA' ObjectSomeValueFrom('derives_from' 'Pyrrolysine tRNA Primary Transcript')) - SubClassOf('Pyrrolysyl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/RNAO_0000096 label: Unpaired Region + SubClassOf('Unpaired Region' SO_0000122) - SubClassOf('Unpaired Region' 'RNA Sequence Secondary Structure') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000202 label: Three Prime Coding Exon - SubClassOf('Three Prime Coding Exon' 'Coding Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000272 label: Tyrosyl tRNA - SubClassOf('Tyrosyl tRNA' 'tRNA') - SubClassOf('Tyrosyl tRNA' ObjectSomeValueFrom('derives_from' 'Tyrosine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000274 label: snRNA - SubClassOf('snRNA' ObjectSomeValueFrom('derives_from' 'snRNA Primary Transcript')) - SubClassOf('snRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000218 label: Glycine tRNA Primary Transcript - SubClassOf('Glycine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000319 label: Stop Codon - SubClassOf('Stop Codon' 'Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001272 label: tRNA Intron - SubClassOf('tRNA Intron' 'Endonuclease Spliced Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001756 label: SL11 Acceptor Site - SubClassOf('SL11 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001533 label: Cryptic Splice SIte - SubClassOf('Cryptic Splice SIte' 'Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000635 label: Mini Exon Donor RNA - SubClassOf('Mini Exon Donor RNA' 'Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001285 label: UGA Stop Codon Signal - SubClassOf('UGA Stop Codon Signal' 'Stop Codon Signal') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000935 label: Edited CDS - SubClassOf('Edited CDS' 'CDS') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000222 label: Lysine tRNA Primary Transcript - SubClassOf('Lysine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000360 label: Codon - SubClassOf('Codon' 'CDS Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000388 label: RRE RNA - SubClassOf('RRE RNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000709 label: SL2 Acceptor Site - SubClassOf('SL2 Acceptor Site' 'Trans Splice Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000201 label: Interior Exon - SubClassOf('Interior Exon' 'Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000647 label: pri-miRNA - SubClassOf('pri-miRNA' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/RNAO_0000106 label: Stem Junction + SubClassOf('Stem Junction' SO_0000122) - SubClassOf('Stem Junction' 'RNA Sequence Secondary Structure') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000263 label: Isoleucyl tRNA - SubClassOf('Isoleucyl tRNA' 'tRNA') - SubClassOf('Isoleucyl tRNA' ObjectSomeValueFrom('derives_from' 'Isoleucine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000252 label: rRNA - SubClassOf('rRNA' ObjectSomeValueFrom('derives_from' 'rRNA Primary Transcript')) - SubClassOf('rRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000184 label: U2 Intron - SubClassOf('U2 Intron' 'Spliceosomal Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000680 label: Non-canonical Start Codon - SubClassOf('Non-canonical Start Codon' 'Start Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000012 label: scRNA Primary Transcript - SubClassOf('scRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000378 label: DsrA RNA - SubClassOf('DsrA RNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000241 label: Internal UTR - SubClassOf('Internal UTR' 'UTR') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000706 label: Trans Splice Acceptor Site - SubClassOf('Trans Splice Acceptor Site' 'Trans Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000256 label: Asparaginyl tRNA - SubClassOf('Asparaginyl tRNA' 'tRNA') - SubClassOf('Asparaginyl tRNA' ObjectSomeValueFrom('derives_from' 'Asparagine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000390 label: Telomerase RNA - SubClassOf('Telomerase RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000254 label: Alanyl tRNA - SubClassOf('Alanyl tRNA' 'tRNA') - SubClassOf('Alanyl tRNA' ObjectSomeValueFrom('derives_from' 'Alanine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000257 label: Aspartyl tRNA - SubClassOf('Aspartyl tRNA' ObjectSomeValueFrom('derives_from' 'Aspartic acid tRNA Primary Transcript')) - SubClassOf('Aspartyl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000861 label: Capped Primary Transcript - SubClassOf('Capped Primary Transcript' 'Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000118 label: Transcript with Translational Frameshift - SubClassOf('Transcript with Translational Frameshift' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000224 label: Phenylalanine tRNA Primary Transcript - SubClassOf('Phenylalanine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000406 label: Twintron - SubClassOf('Twintron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001238 label: Major TSS - SubClassOf('Major TSS' 'TSS') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001288 label: Stop Codon Signal - SubClassOf('Stop Codon Signal' 'Recoding Stimulatory Region') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6073 label: Cnidaria + SubClassOf('Cnidaria' Animal) - SubClassOf('Cnidaria' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000273 label: Valyl tRNA - SubClassOf('Valyl tRNA' ObjectSomeValueFrom('derives_from' 'Valine tRNA Primary Transcript')) - SubClassOf('Valyl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001244 label: pre-miRNA - SubClassOf('pre-miRNA' ObjectSomeValueFrom('part_of' 'pri-miRNA')) - SubClassOf('pre-miRNA' 'miRNA Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000078 label: Polycistronic Transcript - SubClassOf('Polycistronic Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001748 label: SL3 Acceptor Site - SubClassOf('SL3 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001246 label: CDS Independently Known - SubClassOf('CDS Independently Known' 'CDS') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000931 label: Anchor Region - SubClassOf('Anchor Region' 'Guide RNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000325 label: rRNA Large Subunit Primary Transcript - SubClassOf('rRNA Large Subunit Primary Transcript' 'rRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000163 label: 5' cis Splice Site - SubClassOf('5' cis Splice Site' 'cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001475 label: Outron - SubClassOf('Outron' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_6040 label: Porifera + SubClassOf('Porifera' Animal) - SubClassOf('Porifera' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000677 label: Canonical 5' Splice Site - SubClassOf('Canonical 5' Splice Site' '5' cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000989 label: Class II RNA - SubClassOf('Class II RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000275 label: snoRNA - SubClassOf('snoRNA' ObjectSomeValueFrom('derives_from' 'snoRNA Primary Transcript')) - SubClassOf('snoRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000871 label: Polyadenylated mRNA - SubClassOf('Polyadenylated mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000977 label: Anchor Binding Site - SubClassOf('Anchor Binding Site' 'Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000270 label: Threonyl tRNA - SubClassOf('Threonyl tRNA' 'tRNA') - SubClassOf('Threonyl tRNA' ObjectSomeValueFrom('derives_from' 'Threonine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000205 label: Three Prime UTR - SubClassOf('Three Prime UTR' 'UTR') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001655 label: Nucleotide Binding Site - SubClassOf('Nucleotide Binding Site' 'Binding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000847 label: tmRNA Region - SubClassOf('tmRNA Region' 'Mature Transcript Region') - SubClassOf('tmRNA Region' ObjectSomeValueFrom('part_of' 'tmRNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000383 label: MicF RNA - SubClassOf('MicF RNA' 'Antisense RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000391 label: U1 snRNA - SubClassOf('U1 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000651 label: Large Subunit rRNA - SubClassOf('Large Subunit rRNA' 'rRNA') - SubClassOf('Large Subunit rRNA' ObjectSomeValueFrom('derives_from' 'rRNA Large Subunit Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_1001283 label: UAA Stop Codon Signal - SubClassOf('UAA Stop Codon Signal' 'Stop Codon Signal') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001000 label: rRNA 16S - SubClassOf('rRNA 16S' 'Small Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000223 label: Methionine tRNA Primary Transcript - SubClassOf('Methionine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000639 label: Internal Transcribed Spacer Region - SubClassOf('Internal Transcribed Spacer Region' 'Transcribed Spacer Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000269 label: Seryl tRNA - SubClassOf('Seryl tRNA' ObjectSomeValueFrom('derives_from' 'Serine tRNA Primary Transcript')) - SubClassOf('Seryl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000834 label: Mature Transcript Region - SubClassOf('Mature Transcript Region' 'Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000372 label: Enzymatic RNA - SubClassOf('Enzymatic RNA' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000648 label: stRNA Primary Transcript - SubClassOf('stRNA Primary Transcript' 'pri-miRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000035 label: Riboswitch - SubClassOf('Riboswitch' 'mRNA Region') - SubClassOf('Riboswitch' ObjectSomeValueFrom('part_of' 'mRNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000375 label: rRNA 5_8S - SubClassOf('rRNA 5_8S' 'Large Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000835 label: Primary Transcript Region - SubClassOf('Primary Transcript Region' 'Transcript Region') - SubClassOf('Primary Transcript Region' ObjectSomeValueFrom('part_of' 'Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001902 label: Splice Region - SubClassOf('Splice Region' ObjectSomeValueFrom('part_of' 'Primary Transcript')) - SubClassOf('Splice Region' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000219 label: Histidine tRNA Primary Transcript - SubClassOf('Histidine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001870 label: Enhancer RNA - SubClassOf('Enhancer RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001483 label: SNV - SubClassOf('SNV' 'Biological Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000399 label: U12 snRNA - SubClassOf('U12 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000235 label: Transcription Factor Binding Site - SubClassOf('Transcription Factor Binding Site' 'Nucleotide to Protein Binding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000120 label: Protein Coding Primary Transcript - SubClassOf('Protein Coding Primary Transcript' 'Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000707 label: Trans Splice Donor Site - SubClassOf('Trans Splice Donor Site' 'Trans Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001877 label: Lnc RNA - SubClassOf('Lnc RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000268 label: Prolyl tRNA - SubClassOf('Prolyl tRNA' 'tRNA') - SubClassOf('Prolyl tRNA' ObjectSomeValueFrom('derives_from' 'Proline tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_1001197 label: Dicistronic Primary Transcript - SubClassOf('Dicistronic Primary Transcript' 'Polycistronic Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000232 label: snoRNA Primary Transcript - SubClassOf('snoRNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000645 label: Antisense Primary Transcript - SubClassOf('Antisense Primary Transcript' 'Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000652 label: rRNA 5S - SubClassOf('rRNA 5S' 'Large Subunit rRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000837 label: UTR Region - SubClassOf('UTR Region' 'mRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000234 label: mRNA - SubClassOf('mRNA' 'Mature Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000978 label: Template Region - SubClassOf('Template Region' 'Guide RNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001181 label: Bruno Response Element - SubClassOf('Bruno Response Element' 'UTR Region') - SubClassOf('Bruno Response Element' ObjectSomeValueFrom('part_of' 'Three Prime UTR')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000649 label: stRNA - SubClassOf('stRNA' ObjectSomeValueFrom('derives_from' 'stRNA Primary Transcript')) - SubClassOf('stRNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000013 label: scRNA - SubClassOf('scRNA' 'ncRNA') - SubClassOf('scRNA' ObjectSomeValueFrom('derives_from' 'scRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/NCBITaxon_10219 label: Hemichordata + SubClassOf('Hemichordata' Animal) - SubClassOf('Hemichordata' 'Metazoa') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000694 label: SNP - SubClassOf('SNP' 'SNV') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000377 label: CsrB RsmB RNA - SubClassOf('CsrB RsmB RNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001904 label: Antisense lncRNA - SubClassOf('Antisense lncRNA' 'Lnc RNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000934 label: miRNA Target Site - SubClassOf('miRNA Target Site' 'Nucleotide Binding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000108 label: mRNA with Frameshift - SubClassOf('mRNA with Frameshift' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001216 label: Endonuclease Spliced Intron - SubClassOf('Endonuclease Spliced Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0005843 label: rRNA Cleavage RNA - SubClassOf('rRNA Cleavage RNA' 'ncRNA') - SubClassOf('rRNA Cleavage RNA' ObjectSomeValueFrom('derives_from' 'rRNA cleavage snoRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0001473 label: miRNA Antiguide - SubClassOf('miRNA Antiguide' 'miRNA Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000376 label: RNA 6S - SubClassOf('RNA 6S' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001179 label: U3 snoRNA - SubClassOf('U3 snoRNA' 'C/D Box snoRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000318 label: Start Codon - SubClassOf('Start Codon' 'Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000386 label: RNase P RNA - SubClassOf('RNase P RNA' 'ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001752 label: SL7 Acceptor Site - SubClassOf('SL7 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000266 label: Methionyl tRNA - SubClassOf('Methionyl tRNA' 'tRNA') - SubClassOf('Methionyl tRNA' ObjectSomeValueFrom('derives_from' 'Methionine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000874 label: Edited Transcript by A to I Substitution - SubClassOf('Edited Transcript by A to I Substitution' 'Edited Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000389 label: Spot 42 RNA - SubClassOf('Spot 42 RNA' 'Small Regulatory ncRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000589 label: SRP RNA Primary Transcript - SubClassOf('SRP RNA Primary Transcript' 'Noncoding Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001754 label: SL9 Acceptor Site - SubClassOf('SL9 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001259 label: CDS Supported by EST or cDNA Data - SubClassOf('CDS Supported by EST or cDNA Data' 'CDS Supported by Sequence SImilarity Data') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000580 label: Methylation Guide snoRNA Primary Transcript - SubClassOf('Methylation Guide snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000662 label: Spliceosomal Intron - SubClassOf('Spliceosomal Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000872 label: Trans Spliced mRNA - SubClassOf('Trans Spliced mRNA' 'mRNA') - SubClassOf('Trans Spliced mRNA' ObjectSomeValueFrom('adjacent_to' 'Spliced Leader RNA')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000394 label: U4atac snRNA - SubClassOf('U4atac snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001271 label: Archaeal Intron - SubClassOf('Archaeal Intron' 'Endonuclease Spliced Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000479 label: Trans-spliced Transcript - SubClassOf('Trans-spliced Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000142 label: DNA Sequence Secondary Structure - SubClassOf('DNA Sequence Secondary Structure' 'Collection of Nucleotides Residues') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000396 label: U6 snRNA - SubClassOf('U6 snRNA' 'snRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001755 label: SL10 Acceptor Site - SubClassOf('SL10 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000616 label: Transcription End Site - SubClassOf('Transcription End Site' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000190 label: 5' Intron - SubClassOf('5' Intron' 'Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000259 label: Glutaminyl tRNA - SubClassOf('Glutaminyl tRNA' ObjectSomeValueFrom('derives_from' 'Glutamic acid tRNA Primary Transcript')) - SubClassOf('Glutaminyl tRNA' 'tRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001411 label: Biological Region - SubClassOf('Biological Region' 'Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001281 label: Flanking 3' Quadraplet Recoding Signal - SubClassOf('Flanking 3' Quadraplet Recoding Signal' '3' Recoding Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000217 label: Glutamine tRNA Primary Transcript - SubClassOf('Glutamine tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0005857 label: Selenocysteinyl tRNA - SubClassOf('Selenocysteinyl tRNA' 'tRNA') - SubClassOf('Selenocysteinyl tRNA' ObjectSomeValueFrom('derives_from' 'Selenocysteine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000604 label: Editing Block - SubClassOf('Editing Block' 'Edited Transcript Feature') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000264 label: Leucyl tRNA - SubClassOf('Leucyl tRNA' 'tRNA') - SubClassOf('Leucyl tRNA' ObjectSomeValueFrom('derives_from' 'Leucine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000139 label: Ribosome Entry Site - SubClassOf('Ribosome Entry Site' 'mRNA Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000447 label: 5' UTR Intron - SubClassOf('5' UTR Intron' 'UTR Intron') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001211 label: Plus 1 Translational Frameshift - SubClassOf('Plus 1 Translational Frameshift' 'Translational Frameshift') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000335 label: mRNA with Minus 2 Frameshift - SubClassOf('mRNA with Minus 2 Frameshift' 'mRNA with Frameshift') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000704 label: Gene - SubClassOf('Gene' 'Biological Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001254 label: CDS Predicted - SubClassOf('CDS Predicted' 'CDS') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000445 label: Five Prime Noncoding Exon - SubClassOf('Five Prime Noncoding Exon' 'Noncoding Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001273 label: CTG Start Codon - SubClassOf('CTG Start Codon' 'Non-canonical Start Codon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000486 label: Five Prime Coding Exon Noncoding Region - SubClassOf('Five Prime Coding Exon Noncoding Region' ObjectSomeValueFrom('part_of' 'Five Prime Noncoding Exon')) - SubClassOf('Five Prime Coding Exon Noncoding Region' 'Noncoding Region of Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000678 label: Non-canonical 3' Splice Site - SubClassOf('Non-canonical 3' Splice Site' '3' cis Splice Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000255 label: rRNA Small Subunit Primary Transcript - SubClassOf('rRNA Small Subunit Primary Transcript' 'rRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0005845 label: Exon of Single Exon Gene - SubClassOf('Exon of Single Exon Gene' 'Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001753 label: SL8 Acceptor Site - SubClassOf('SL8 Acceptor Site' 'SL2 Acceptor Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000162 label: Splice Site - SubClassOf('Splice Site' 'Primary Transcript Region') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000995 label: Consensus mRNA - SubClassOf('Consensus mRNA' 'mRNA') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000195 label: Coding Exon - SubClassOf('Coding Exon' 'Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_SO:0000329 label: mRNA with Plus 2 Frameshift - SubClassOf('mRNA with Plus 2 Frameshift' 'mRNA with Frameshift') --- Class Changed: http://purl.obolibrary.org/obo/RNAO_0000107 label: Strand End + SubClassOf('Strand End' SO_0000122) - SubClassOf('Strand End' 'RNA Sequence Secondary Structure') --- Class Changed: http://purl.obolibrary.org/obo/SO_0005841 label: Methylation Guide snoRNA - SubClassOf('Methylation Guide snoRNA' 'C/D Box snoRNA') - SubClassOf('Methylation Guide snoRNA' ObjectSomeValueFrom('derives_from' 'Methylation Guide snoRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000629 label: Five Prime Open Reading Frame - SubClassOf('Five Prime Open Reading Frame' 'mRNA Region') - SubClassOf('Five Prime Open Reading Frame' ObjectSomeValueFrom('part_of' 'Five Prime UTR')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000583 label: Pre-edited Region - SubClassOf('Pre-edited Region' 'Edited Transcript Feature') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000185 label: Primary Transcript - SubClassOf('Primary Transcript' 'Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000265 label: Lysyl tRNA - SubClassOf('Lysyl tRNA' 'tRNA') - SubClassOf('Lysyl tRNA' ObjectSomeValueFrom('derives_from' 'Lysine tRNA Primary Transcript')) --- Class Changed: http://purl.obolibrary.org/obo/SO_0000200 label: Five Prime Coding Exon - SubClassOf('Five Prime Coding Exon' 'Coding Exon') --- Class Changed: http://purl.obolibrary.org/obo/SO_0000216 label: Glutamic acid tRNA Primary Transcript - SubClassOf('Glutamic acid tRNA Primary Transcript' 'tRNA Primary Transcript') --- Class Changed: http://purl.obolibrary.org/obo/SO_0001647 label: Kozak Sequence - SubClassOf('Kozak Sequence' 'Ribosome Entry Site') --- Class Changed: http://purl.obolibrary.org/obo/SO_1001268 label: Recoding Stimulatory Region - SubClassOf('Recoding Stimulatory Region' 'mRNA Region') @New Classes --- !New Class!: http://purl.org/obo/owl/SO#SO_0000223 label: Methionine tRNA Primary Transcript + SubClassOf('Methionine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001751 label: SL6 Acceptor Site + SubClassOf('SL6 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000587 label: Group I Intron + SubClassOf('Group I Intron' 'Autocatalutically Spliced Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001173 label: Anticodon Loop + SubClassOf('Anticodon Loop' 'tRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001753 label: SL8 Acceptor Site + SubClassOf('SL8 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0005837 label: U14 snoRNA Primary Transcript + SubClassOf('U14 snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- !New Class!: http://anobase.vectorbase.org/mirnao/mirnao.owl#Internal_Transcribed_Spacer_Region label: Internal Transcribed Spacer Region + SubClassOf('Internal Transcribed Spacer Region' 'Transcribed Spacer Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0005856 label: Selenocysteine tRNA Primary Transcript + SubClassOf('Selenocysteine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000603 label: Group II Intron + SubClassOf('Group II Intron' 'Autocatalutically Spliced Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000256 label: Asparaginyl tRNA + SubClassOf('Asparaginyl tRNA' 'tRNA') + SubClassOf('Asparaginyl tRNA' ObjectSomeValueFrom('derives_from' 'Asparagine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_1001287 label: Distant 3' Recoding SIgnal + SubClassOf('Distant 3' Recoding SIgnal' '3' Recoding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000930 label: Guide RNA Region + SubClassOf('Guide RNA Region' ObjectSomeValueFrom('part_of' 'Guide RNA')) + SubClassOf('Guide RNA Region' 'Mature Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000645 label: Antisense Primary Transcript + SubClassOf('Antisense Primary Transcript' 'Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000282 label: mRNA with Minus 1 Frameshift + SubClassOf('mRNA with Minus 1 Frameshift' 'mRNA with Frameshift') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001181 label: Bruno Response Element + SubClassOf('Bruno Response Element' 'UTR Region') + SubClassOf('Bruno Response Element' ObjectSomeValueFrom('part_of' 'Three Prime UTR')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000398 label: U11 snRNA + SubClassOf('U11 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000406 label: Twintron + SubClassOf('Twintron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000270 label: Threonyl tRNA + SubClassOf('Threonyl tRNA' 'tRNA') + SubClassOf('Threonyl tRNA' ObjectSomeValueFrom('derives_from' 'Threonine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000716 label: Dicistronic mRNA + SubClassOf('Dicistronic mRNA' 'Polycistronic mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000386 label: RNase P RNA + SubClassOf('RNase P RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001182 label: Iron Responsive Element + SubClassOf('Iron Responsive Element' ObjectSomeValueFrom('part_of' 'UTR')) + SubClassOf('Iron Responsive Element' 'UTR Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000483 label: Noncoding Primary Transcript + SubClassOf('Noncoding Primary Transcript' 'Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000595 label: C/D Box snoRNA Primary Transcript + SubClassOf('C/D Box snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000188 label: Intron + SubClassOf('Intron' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000203 label: UTR + SubClassOf('UTR' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001211 label: Plus 1 Translational Frameshift + SubClassOf('Plus 1 Translational Frameshift' 'Translational Frameshift') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000001 label: Region + SubClassOf('Region' 'Fiat Object Part') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000405 label: Y RNA + SubClassOf('Y RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000403 label: U14 snoRNA + SubClassOf('U14 snoRNA' ObjectSomeValueFrom('derives_from' 'U14 snoRNA Primary Transcript')) + SubClassOf('U14 snoRNA' 'C/D Box snoRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000847 label: tmRNA Region + SubClassOf('tmRNA Region' 'Mature Transcript Region') + SubClassOf('tmRNA Region' ObjectSomeValueFrom('part_of' 'tmRNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001473 label: miRNA Antiguide + SubClassOf('miRNA Antiguide' 'miRNA Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000602 label: Guide RNA + SubClassOf('Guide RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001016 label: Internal Guide Sequence + SubClassOf('Internal Guide Sequence' ObjectSomeValueFrom('part_of' 'Group I Intron')) + SubClassOf('Internal Guide Sequence' 'Intron Domain') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000769 label: tmRNA Coding Piece + SubClassOf('tmRNA Coding Piece' 'tmRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000629 label: Five Prime Open Reading Frame + SubClassOf('Five Prime Open Reading Frame' 'mRNA Region') + SubClassOf('Five Prime Open Reading Frame' ObjectSomeValueFrom('part_of' 'Five Prime UTR')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001754 label: SL9 Acceptor Site + SubClassOf('SL9 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001035 label: piRNA + SubClassOf('piRNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000588 label: Autocatalutically Spliced Intron + SubClassOf('Autocatalutically Spliced Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000651 label: Large Subunit rRNA + SubClassOf('Large Subunit rRNA' 'rRNA') + SubClassOf('Large Subunit rRNA' ObjectSomeValueFrom('derives_from' 'rRNA Large Subunit Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000678 label: Non-canonical 3' Splice Site + SubClassOf('Non-canonical 3' Splice Site' '3' cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000325 label: rRNA Large Subunit Primary Transcript + SubClassOf('rRNA Large Subunit Primary Transcript' 'rRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001251 label: CDS Supported by Sequence SImilarity Data + SubClassOf('CDS Supported by Sequence SImilarity Data' 'CDS Predicted') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001647 label: Kozak Sequence + SubClassOf('Kozak Sequence' 'Ribosome Entry Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000394 label: U4atac snRNA + SubClassOf('U4atac snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_SO:0000329 label: mRNA with Plus 2 Frameshift + SubClassOf('mRNA with Plus 2 Frameshift' 'mRNA with Frameshift') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000410 label: Protein Binding SIte + SubClassOf('Protein Binding SIte' 'Binding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000108 label: mRNA with Frameshift + SubClassOf('mRNA with Frameshift' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000376 label: RNA 6S + SubClassOf('RNA 6S' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001274 label: SECIS Element + SubClassOf('SECIS Element' 'Recoding Stimulatory Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000679 label: Non-canonical 5' Splice SIte + SubClassOf('Non-canonical 5' Splice SIte' '5' cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001411 label: Biological Region + SubClassOf('Biological Region' 'Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001244 label: pre-miRNA + SubClassOf('pre-miRNA' ObjectSomeValueFrom('part_of' 'pri-miRNA')) + SubClassOf('pre-miRNA' 'miRNA Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000384 label: OxyS RNA + SubClassOf('OxyS RNA' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000335 label: mRNA with Minus 2 Frameshift + SubClassOf('mRNA with Minus 2 Frameshift' 'mRNA with Frameshift') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001245 label: miRNA Stem + SubClassOf('miRNA Stem' 'miRNA Primary Transcript Region') + SubClassOf('miRNA Stem' ObjectSomeValueFrom('part_of' 'pre-miRNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000631 label: Polycistronic Primary Transcript + SubClassOf('Polycistronic Primary Transcript' 'Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001654 label: Nucleotide to Protein Binding Site + SubClassOf('Nucleotide to Protein Binding Site' 'Protein Binding SIte') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000221 label: Leucine tRNA Primary Transcript + SubClassOf('Leucine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000260 label: Glutamyl tRNA + SubClassOf('Glutamyl tRNA' 'tRNA') + SubClassOf('Glutamyl tRNA' ObjectSomeValueFrom('derives_from' 'Glutamine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000147 label: Exon + SubClassOf('Exon' 'Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000319 label: Stop Codon + SubClassOf('Stop Codon' 'Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001172 label: tRNA Region + SubClassOf('tRNA Region' ObjectSomeValueFrom('part_of' 'tRNA')) + SubClassOf('tRNA Region' 'Mature Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000666 label: Mobile Intron + SubClassOf('Mobile Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000303 label: Clip + SubClassOf('Clip' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000650 label: Small Subunit rRNA + SubClassOf('Small Subunit rRNA' ObjectSomeValueFrom('derives_from' 'rRNA Small Subunit Primary Transcript')) + SubClassOf('Small Subunit rRNA' 'rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000004 label: Interior Coding Exon + SubClassOf('Interior Coding Exon' 'Coding Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000243 label: Internal Ribosome Entry Site + SubClassOf('Internal Ribosome Entry Site' 'Ribosome Entry Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000694 label: SNP + SubClassOf('SNP' 'SNV') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000662 label: Spliceosomal Intron + SubClassOf('Spliceosomal Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000583 label: Pre-edited Region + SubClassOf('Pre-edited Region' 'Edited Transcript Feature') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000640 label: External Transcribed Spacer Region + SubClassOf('External Transcribed Spacer Region' 'Transcribed Spacer Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000390 label: Telomerase RNA + SubClassOf('Telomerase RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000318 label: Start Codon + SubClassOf('Start Codon' 'Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000242 label: Untranslated Region Polycistronic mRNA + SubClassOf('Untranslated Region Polycistronic mRNA' 'UTR') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000557 label: 3' Clip + SubClassOf('3' Clip' 'Clip') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000320 label: Intronic Splice Enhancer + SubClassOf('Intronic Splice Enhancer' 'Spliceosomal Intron Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000838 label: rRNA Primary Transcript Region + SubClassOf('rRNA Primary Transcript Region' 'Primary Transcript Region') + SubClassOf('rRNA Primary Transcript Region' ObjectSomeValueFrom('part_of' 'rRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000225 label: Proline tRNA Primary Transcript + SubClassOf('Proline tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000995 label: Consensus mRNA + SubClassOf('Consensus mRNA' 'mRNA') --- !New Class!: http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Animal label: Animals + SubClassOf('Animals' 'Cellular Organism') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000321 label: mRNA with Plus 1 Frameshift + SubClassOf('mRNA with Plus 1 Frameshift' 'mRNA with Frameshift') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000883 label: Stop Codon Read Through + SubClassOf('Stop Codon Read Through' 'Recoded Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001655 label: Nucleotide Binding Site + SubClassOf('Nucleotide Binding Site' 'Binding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000990 label: Class I RNA + SubClassOf('Class I RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001238 label: Major TSS + SubClassOf('Major TSS' 'TSS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000704 label: Gene + SubClassOf('Gene' 'Biological Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000234 label: mRNA + SubClassOf('mRNA' 'Mature Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000399 label: U12 snRNA + SubClassOf('U12 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000709 label: SL2 Acceptor Site + SubClassOf('SL2 Acceptor Site' 'Trans Splice Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001265 label: mRNA Recoded by Codon Redefinition + SubClassOf('mRNA Recoded by Codon Redefinition' 'Recoded mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000635 label: Mini Exon Donor RNA + SubClassOf('Mini Exon Donor RNA' 'Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001247 label: Orphan CDS + SubClassOf('Orphan CDS' 'CDS Predicted') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001272 label: tRNA Intron + SubClassOf('tRNA Intron' 'Endonuclease Spliced Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000404 label: Vault RNA + SubClassOf('Vault RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001282 label: UAG Stop Codon Signal + SubClassOf('UAG Stop Codon Signal' 'Stop Codon Signal') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001175 label: CCA Tail + SubClassOf('CCA Tail' 'tRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000120 label: Protein Coding Primary Transcript + SubClassOf('Protein Coding Primary Transcript' 'Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001281 label: Flanking 3' Quadraplet Recoding Signal + SubClassOf('Flanking 3' Quadraplet Recoding Signal' '3' Recoding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000226 label: Serine tRNA Primary Transcript + SubClassOf('Serine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001174 label: Anticodon + SubClassOf('Anticodon' ObjectSomeValueFrom('part_of' 'Anticodon Loop')) + SubClassOf('Anticodon' 'tRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000706 label: Trans Splice Acceptor Site + SubClassOf('Trans Splice Acceptor Site' 'Trans Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000630 label: Upstream AUG Codon + SubClassOf('Upstream AUG Codon' 'UTR Region') + SubClassOf('Upstream AUG Codon' ObjectSomeValueFrom('part_of' 'UTR')) --- !New Class!: http://purl.org/obo/owl/SO#SO_1001269 label: 4bp Start Codon + SubClassOf('4bp Start Codon' 'Non-canonical Start Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000375 label: rRNA 5_8S + SubClassOf('rRNA 5_8S' 'Large Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000214 label: Aspartic acid tRNA Primary Transcript + SubClassOf('Aspartic acid tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001755 label: SL10 Acceptor Site + SubClassOf('SL10 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001036 label: Arginyl tRNA + SubClassOf('Arginyl tRNA' 'tRNA') + SubClassOf('Arginyl tRNA' ObjectSomeValueFrom('derives_from' 'Arginine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000185 label: Primary Transcript + SubClassOf('Primary Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000653 label: rRNA 28S + SubClassOf('rRNA 28S' 'Large Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001259 label: CDS Supported by EST or cDNA Data + SubClassOf('CDS Supported by EST or cDNA Data' 'CDS Supported by Sequence SImilarity Data') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000192 label: 3' Intron + SubClassOf('3' Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000258 label: Cysteinyl tRNA + SubClassOf('Cysteinyl tRNA' ObjectSomeValueFrom('derives_from' 'Cysteine tRNA Primary Transcript')) + SubClassOf('Cysteinyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000388 label: RRE RNA + SubClassOf('RRE RNA' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001264 label: mRNA Recoded by Translation Bypass + SubClassOf('mRNA Recoded by Translation Bypass' 'Recoded mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001268 label: Recoding Stimulatory Region + SubClassOf('Recoding Stimulatory Region' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000265 label: Lysyl tRNA + SubClassOf('Lysyl tRNA' ObjectSomeValueFrom('derives_from' 'Lysine tRNA Primary Transcript')) + SubClassOf('Lysyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001463 label: Linc RNA + SubClassOf('Linc RNA' 'Lnc RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000837 label: UTR Region + SubClassOf('UTR Region' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000766 label: Pyrrolysyl tRNA + SubClassOf('Pyrrolysyl tRNA' ObjectSomeValueFrom('derives_from' 'Pyrrolysine tRNA Primary Transcript')) + SubClassOf('Pyrrolysyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001210 label: Translational Frameshift + SubClassOf('Translational Frameshift' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000261 label: Glycyl tRNA + SubClassOf('Glycyl tRNA' 'tRNA') + SubClassOf('Glycyl tRNA' ObjectSomeValueFrom('derives_from' 'Glycine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001215 label: Coding Region of Exon + SubClassOf('Coding Region of Exon' 'Exon Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000229 label: Tyrosine tRNA Primary Transcript + SubClassOf('Tyrosine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000012 label: scRNA Primary Transcript + SubClassOf('scRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000978 label: Template Region + SubClassOf('Template Region' 'Guide RNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001750 label: SL5 Acceptor Site + SubClassOf('SL5 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000252 label: rRNA + SubClassOf('rRNA' ObjectSomeValueFrom('derives_from' 'rRNA Primary Transcript')) + SubClassOf('rRNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000377 label: CsrB RsmB RNA + SubClassOf('CsrB RsmB RNA' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000139 label: Ribosome Entry Site + SubClassOf('Ribosome Entry Site' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000652 label: rRNA 5S + SubClassOf('rRNA 5S' 'Large Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000604 label: Editing Block + SubClassOf('Editing Block' 'Edited Transcript Feature') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001870 label: Enhancer RNA + SubClassOf('Enhancer RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000268 label: Prolyl tRNA + SubClassOf('Prolyl tRNA' 'tRNA') + SubClassOf('Prolyl tRNA' ObjectSomeValueFrom('derives_from' 'Proline tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000184 label: U2 Intron + SubClassOf('U2 Intron' 'Spliceosomal Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000582 label: rRNA cleavage snoRNA Primary Transcript + SubClassOf('rRNA cleavage snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000196 label: Five Prime Coding Exon Coding Region + SubClassOf('Five Prime Coding Exon Coding Region' ObjectSomeValueFrom('part_of' 'Five Prime Coding Exon')) + SubClassOf('Five Prime Coding Exon Coding Region' 'Coding Region of Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000263 label: Isoleucyl tRNA + SubClassOf('Isoleucyl tRNA' 'tRNA') + SubClassOf('Isoleucyl tRNA' ObjectSomeValueFrom('derives_from' 'Isoleucine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001475 label: Outron + SubClassOf('Outron' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000834 label: Mature Transcript Region + SubClassOf('Mature Transcript Region' 'Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000253 label: tRNA + SubClassOf('tRNA' 'ncRNA') + SubClassOf('tRNA' ObjectSomeValueFrom('derives_from' 'tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000586 label: tmRNA Primary Transcript + SubClassOf('tmRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000327 label: Coding End + SubClassOf('Coding End' 'CDS Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001285 label: UGA Stop Codon Signal + SubClassOf('UGA Stop Codon Signal' 'Stop Codon Signal') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000273 label: Valyl tRNA + SubClassOf('Valyl tRNA' ObjectSomeValueFrom('derives_from' 'Valine tRNA Primary Transcript')) + SubClassOf('Valyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000590 label: SRP RNA + SubClassOf('SRP RNA' 'ncRNA') + SubClassOf('SRP RNA' ObjectSomeValueFrom('derives_from' 'SRP RNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000616 label: Transcription End Site + SubClassOf('Transcription End Site' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001384 label: CDS Fragment + SubClassOf('CDS Fragment' 'CDS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000262 label: Histidyl tRNA + SubClassOf('Histidyl tRNA' ObjectSomeValueFrom('derives_from' 'Histidine tRNA Primary Transcript')) + SubClassOf('Histidyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001001 label: rRNA 23S + SubClassOf('rRNA 23S' 'Large Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001271 label: Archaeal Intron + SubClassOf('Archaeal Intron' 'Endonuclease Spliced Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000191 label: Interior Intron + SubClassOf('Interior Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000871 label: Polyadenylated mRNA + SubClassOf('Polyadenylated mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000681 label: Aberrant Processed Transcript + SubClassOf('Aberrant Processed Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001283 label: UAA Stop Codon Signal + SubClassOf('UAA Stop Codon Signal' 'Stop Codon Signal') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000445 label: Five Prime Noncoding Exon + SubClassOf('Five Prime Noncoding Exon' 'Noncoding Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000934 label: miRNA Target Site + SubClassOf('miRNA Target Site' 'Nucleotide Binding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000255 label: rRNA Small Subunit Primary Transcript + SubClassOf('rRNA Small Subunit Primary Transcript' 'rRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001419 label: cis Splice Site + SubClassOf('cis Splice Site' 'Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000931 label: Anchor Region + SubClassOf('Anchor Region' 'Guide RNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000360 label: Codon + SubClassOf('Codon' 'CDS Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_10012177 label: 3' Recoding Site + SubClassOf('3' Recoding Site' 'Recoding Stimulatory Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000204 label: Five Prime UTR + SubClassOf('Five Prime UTR' 'UTR') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000655 label: ncRNA + SubClassOf('ncRNA' 'Mature Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000444 label: Three Prime Noncoding Exon + SubClassOf('Three Prime Noncoding Exon' 'Noncoding Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000323 label: Coding Start + SubClassOf('Coding Start' 'CDS Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000201 label: Interior Exon + SubClassOf('Interior Exon' 'Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001197 label: Dicistronic Primary Transcript + SubClassOf('Dicistronic Primary Transcript' 'Polycistronic Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001246 label: miRNA Loop + SubClassOf('miRNA Loop' 'miRNA Primary Transcript Region') + SubClassOf('miRNA Loop' ObjectSomeValueFrom('part_of' 'pre-miRNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000454 label: rasiRNA + SubClassOf('rasiRNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000395 label: U5 snRNA + SubClassOf('U5 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000213 label: Asparagine tRNA Primary Transcript + SubClassOf('Asparagine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001014 label: Intron Domain + SubClassOf('Intron Domain' 'Primary Transcript Region') + SubClassOf('Intron Domain' ObjectSomeValueFrom('part_of' 'Intron')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000385 label: RNase MRP RNA + SubClassOf('RNase MRP RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000862 label: Capped mRNA + SubClassOf('Capped mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000851 label: CDS Region + SubClassOf('CDS Region' ObjectSomeValueFrom('part_of' 'CDS')) + SubClassOf('CDS Region' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000676 label: Canonical 3' Splice Site + SubClassOf('Canonical 3' Splice Site' '3' cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001420 label: Trans Splice Site + SubClassOf('Trans Splice Site' 'Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000396 label: U6 snRNA + SubClassOf('U6 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000486 label: Five Prime Coding Exon Noncoding Region + SubClassOf('Five Prime Coding Exon Noncoding Region' ObjectSomeValueFrom('part_of' 'Five Prime Noncoding Exon')) + SubClassOf('Five Prime Coding Exon Noncoding Region' 'Noncoding Region of Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001171 label: rRNA 21S + SubClassOf('rRNA 21S' 'Large Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000267 label: Phenylalanyl tRNA + SubClassOf('Phenylalanyl tRNA' 'tRNA') + SubClassOf('Phenylalanyl tRNA' ObjectSomeValueFrom('derives_from' 'Phenylalanine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_1001246 label: CDS Independently Known + SubClassOf('CDS Independently Known' 'CDS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000257 label: Aspartyl tRNA + SubClassOf('Aspartyl tRNA' ObjectSomeValueFrom('derives_from' 'Aspartic acid tRNA Primary Transcript')) + SubClassOf('Aspartyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000446 label: UTR Intron + SubClassOf('UTR Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000861 label: Capped Primary Transcript + SubClassOf('Capped Primary Transcript' 'Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000205 label: Three Prime UTR + SubClassOf('Three Prime UTR' 'UTR') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000122 label: RNA Sequence Secondary Structure + SubClassOf('RNA Sequence Secondary Structure' 'Collection of Nucleotides Residues') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001034 label: Mirtron + SubClassOf('Mirtron' 'Intron Domain') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001214 label: Noncoding Region of Exon + SubClassOf('Noncoding Region of Exon' 'Exon Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001180 label: AU Rich Element + SubClassOf('AU Rich Element' 'UTR Region') + SubClassOf('AU Rich Element' ObjectSomeValueFrom('part_of' 'Three Prime UTR')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000316 label: CDS + SubClassOf('CDS' 'mRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000770 label: tmRNA Acceptor Piece + SubClassOf('tmRNA Acceptor Piece' 'tmRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000391 label: U1 snRNA + SubClassOf('U1 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001213 label: Group III Intron + SubClassOf('Group III Intron' 'Autocatalutically Spliced Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001902 label: Splice Region + SubClassOf('Splice Region' ObjectSomeValueFrom('part_of' 'Primary Transcript')) + SubClassOf('Splice Region' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000163 label: 5' cis Splice Site + SubClassOf('5' cis Splice Site' 'cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000596 label: H/ACA Box snoRNA Primary Transcript + SubClassOf('H/ACA Box snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001903 label: Intronic lncRNA + SubClassOf('Intronic lncRNA' 'Lnc RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001800 label: tasiRNA + SubClassOf('tasiRNA' 'ncRNA') + SubClassOf('tasiRNA' ObjectSomeValueFrom('derives_from' 'tasiRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000142 label: DNA Sequence Secondary Structure + SubClassOf('DNA Sequence Secondary Structure' 'Collection of Nucleotides Residues') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000665 label: Monocistronic Transcript + SubClassOf('Monocistronic Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000584 label: tmRNA + SubClassOf('tmRNA' 'Small Regulatory ncRNA') + SubClassOf('tmRNA' ObjectSomeValueFrom('derives_from' 'tmRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001178 label: Pyrrolysine tRNA Primary Transcript + SubClassOf('Pyrrolysine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001877 label: Lnc RNA + SubClassOf('Lnc RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000833 label: Transcript Region + SubClassOf('Transcript Region' 'Biological Region') + SubClassOf('Transcript Region' ObjectSomeValueFrom('part_of' 'Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000224 label: Phenylalanine tRNA Primary Transcript + SubClassOf('Phenylalanine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000231 label: snRNA Primary Transcript + SubClassOf('snRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000315 label: TSS + SubClassOf('TSS' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001503 label: Processed Transcript + SubClassOf('Processed Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000873 label: Edited Transcript + SubClassOf('Edited Transcript' ObjectSomeValueFrom('has_part' 'Anchor Binding Site')) + SubClassOf('Edited Transcript' 'Transcript') + SubClassOf('Edited Transcript' ObjectSomeValueFrom('guided_by' 'Guide RNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000636 label: Spliced Leader RNA + SubClassOf('Spliced Leader RNA' 'Primary Transcript Region') + SubClassOf('Spliced Leader RNA' ObjectSomeValueFrom('part_of' 'Mini Exon Donor RNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001904 label: Antisense lncRNA + SubClassOf('Antisense lncRNA' 'Lnc RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000447 label: 5' UTR Intron + SubClassOf('5' UTR Intron' 'UTR Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000118 label: Transcript with Translational Frameshift + SubClassOf('Transcript with Translational Frameshift' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000241 label: Internal UTR + SubClassOf('Internal UTR' 'UTR') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000272 label: Tyrosyl tRNA + SubClassOf('Tyrosyl tRNA' 'tRNA') + SubClassOf('Tyrosyl tRNA' ObjectSomeValueFrom('derives_from' 'Tyrosine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000552 label: Shine Dalgarno Sequence + SubClassOf('Shine Dalgarno Sequence' 'Ribosome Entry Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000836 label: mRNA Region + SubClassOf('mRNA Region' ObjectSomeValueFrom('part_of' 'mRNA')) + SubClassOf('mRNA Region' 'Mature Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001279 label: 3' Stem-loop Structure + SubClassOf('3' Stem-loop Structure' '3' Recoding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001533 label: Cryptic Splice SIte + SubClassOf('Cryptic Splice SIte' 'Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000279 label: Transcript Bound by Protein + SubClassOf('Transcript Bound by Protein' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000638 label: Transcribed Spacer Region + SubClassOf('Transcribed Spacer Region' 'rRNA Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000594 label: H/ACA Box snoRNA + SubClassOf('H/ACA Box snoRNA' ObjectSomeValueFrom('derives_from' 'H/ACA Box snoRNA Primary Transcript')) + SubClassOf('H/ACA Box snoRNA' 'snoRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000392 label: U2 snRNA + SubClassOf('U2 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000935 label: Edited CDS + SubClassOf('Edited CDS' 'CDS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000197 label: Three Prime Coding Exon Coding Region + SubClassOf('Three Prime Coding Exon Coding Region' 'Coding Region of Exon') + SubClassOf('Three Prime Coding Exon Coding Region' ObjectSomeValueFrom('part_of' 'Three Prime Coding Exon')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000372 label: Enzymatic RNA + SubClassOf('Enzymatic RNA' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000164 label: 3' cis Splice Site + SubClassOf('3' cis Splice Site' 'cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001000 label: rRNA 16S + SubClassOf('rRNA 16S' 'Small Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001280 label: 5' Recoding Site + SubClassOf('5' Recoding Site' 'Recoding Stimulatory Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001756 label: SL11 Acceptor Site + SubClassOf('SL11 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000677 label: Canonical 5' Splice Site + SubClassOf('Canonical 5' Splice Site' '5' cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0005857 label: Selenocysteinyl tRNA + SubClassOf('Selenocysteinyl tRNA' 'tRNA') + SubClassOf('Selenocysteinyl tRNA' ObjectSomeValueFrom('derives_from' 'Selenocysteine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000932 label: pre-edited mRNA + SubClassOf('pre-edited mRNA' 'Protein Coding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001239 label: Minor TSS + SubClassOf('Minor TSS' 'TSS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000254 label: Alanyl tRNA + SubClassOf('Alanyl tRNA' 'tRNA') + SubClassOf('Alanyl tRNA' ObjectSomeValueFrom('derives_from' 'Alanine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_1001288 label: Stop Codon Signal + SubClassOf('Stop Codon Signal' 'Recoding Stimulatory Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000633 label: Monocistronic mRNA + SubClassOf('Monocistronic mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000611 label: Branch Site + SubClassOf('Branch Site' 'Spliceosomal Intron Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000276 label: miRNA + SubClassOf('miRNA' 'Small Regulatory ncRNA') + SubClassOf('miRNA' ObjectSomeValueFrom('derives_from' 'pri-miRNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000274 label: snRNA + SubClassOf('snRNA' 'ncRNA') + SubClassOf('snRNA' ObjectSomeValueFrom('derives_from' 'snRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000634 label: Polycistronic mRNA + SubClassOf('Polycistronic mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000212 label: Arginine tRNA Primary Transcript + SubClassOf('Arginine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000389 label: Spot 42 RNA + SubClassOf('Spot 42 RNA' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000708 label: SL1 Acceptor Site + SubClassOf('SL1 Acceptor Site' 'Trans Splice Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001801 label: tasiRNA Primary Transcript + SubClassOf('tasiRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001249 label: CDS Supported by Domain Match Data + SubClassOf('CDS Supported by Domain Match Data' 'CDS Supported by Sequence SImilarity Data') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000210 label: tRNA Primary Transcript + SubClassOf('tRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000977 label: Anchor Binding Site + SubClassOf('Anchor Binding Site' 'Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000222 label: Lysine tRNA Primary Transcript + SubClassOf('Lysine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000278 label: Transcript Bound by Nucleic Acid + SubClassOf('Transcript Bound by Nucleic Acid' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000370 label: Small Regulatory ncRNA + SubClassOf('Small Regulatory ncRNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000835 label: Primary Transcript Region + SubClassOf('Primary Transcript Region' 'Transcript Region') + SubClassOf('Primary Transcript Region' ObjectSomeValueFrom('part_of' 'Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000078 label: Polycistronic Transcript + SubClassOf('Polycistronic Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000998 label: Recursive Splice Site + SubClassOf('Recursive Splice Site' 'cis Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000884 label: Stop Codon Redefined as Pyrrolysine + SubClassOf('Stop Codon Redefined as Pyrrolysine' 'Stop Codon Read Through') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000374 label: Ribozyme + SubClassOf('Ribozyme' 'Enzymatic RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001752 label: SL7 Acceptor Site + SubClassOf('SL7 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000632 label: Monocistronic Primary Transcript + SubClassOf('Monocistronic Primary Transcript' 'Monocistronic Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000644 label: Antisense RNA + SubClassOf('Antisense RNA' 'ncRNA') + SubClassOf('Antisense RNA' ObjectSomeValueFrom('derives_from' 'Antisense Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000448 label: 3' UTR Intron + SubClassOf('3' UTR Intron' 'UTR Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000232 label: snoRNA Primary Transcript + SubClassOf('snoRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001286 label: 3' Repeat Recoding Signal + SubClassOf('3' Repeat Recoding Signal' '3' Recoding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0005841 label: Methylation Guide snoRNA + SubClassOf('Methylation Guide snoRNA' 'C/D Box snoRNA') + SubClassOf('Methylation Guide snoRNA' ObjectSomeValueFrom('derives_from' 'Methylation Guide snoRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000145 label: Recoded Codon + SubClassOf('Recoded Codon' 'Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001748 label: SL3 Acceptor Site + SubClassOf('SL3 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000383 label: MicF RNA + SubClassOf('MicF RNA' 'Antisense RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000228 label: Tryptophan tRNA Primary Transcript + SubClassOf('Tryptophan tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000209 label: rRNA Primary Transcript + SubClassOf('rRNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000649 label: stRNA + SubClassOf('stRNA' ObjectSomeValueFrom('derives_from' 'stRNA Primary Transcript')) + SubClassOf('stRNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000271 label: Tryptophanyl tRNA + SubClassOf('Tryptophanyl tRNA' 'tRNA') + SubClassOf('Tryptophanyl tRNA' ObjectSomeValueFrom('derives_from' 'Tryptophan tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000387 label: RprA RNA + SubClassOf('RprA RNA' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000479 label: Trans-spliced Transcript + SubClassOf('Trans-spliced Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000707 label: Trans Splice Donor Site + SubClassOf('Trans Splice Donor Site' 'Trans Splice Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000393 label: U4 snRNA + SubClassOf('U4 snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001757 label: SL12 Acceptor Site + SubClassOf('SL12 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000195 label: Coding Exon + SubClassOf('Coding Exon' 'Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000379 label: GcvB RNA + SubClassOf('GcvB RNA' 'DsrA RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000230 label: Valine tRNA Primary Transcript + SubClassOf('Valine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001869 label: Transposable Element CDS + SubClassOf('Transposable Element CDS' 'CDS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000269 label: Seryl tRNA + SubClassOf('Seryl tRNA' ObjectSomeValueFrom('derives_from' 'Serine tRNA Primary Transcript')) + SubClassOf('Seryl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000885 label: Stop Codon Redefined as Selenocysteine + SubClassOf('Stop Codon Redefined as Selenocysteine' 'Stop Codon Read Through') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001483 label: SNV + SubClassOf('SNV' 'Biological Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001216 label: Endonuclease Spliced Intron + SubClassOf('Endonuclease Spliced Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001243 label: miRNA Primary Transcript Region + SubClassOf('miRNA Primary Transcript Region' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001273 label: CTG Start Codon + SubClassOf('CTG Start Codon' 'Non-canonical Start Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000579 label: Edited Transcript Feature + SubClassOf('Edited Transcript Feature' 'Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000035 label: Riboswitch + SubClassOf('Riboswitch' 'mRNA Region') + SubClassOf('Riboswitch' ObjectSomeValueFrom('part_of' 'mRNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000612 label: Polypirimidine Tract + SubClassOf('Polypirimidine Tract' 'Spliceosomal Intron Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000382 label: Group IIB Intron + SubClassOf('Group IIB Intron' 'Group II Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000872 label: Trans Spliced mRNA + SubClassOf('Trans Spliced mRNA' 'mRNA') + SubClassOf('Trans Spliced mRNA' ObjectSomeValueFrom('adjacent_to' 'Spliced Leader RNA')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000162 label: Splice Site + SubClassOf('Splice Site' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000227 label: Threonine tRNA Primary Transcript + SubClassOf('Threonine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0005845 label: Exon of Single Exon Gene + SubClassOf('Exon of Single Exon Gene' 'Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001179 label: U3 snoRNA + SubClassOf('U3 snoRNA' 'C/D Box snoRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000673 label: Transcript + SubClassOf('Transcript' 'RNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001254 label: CDS Predicted + SubClassOf('CDS Predicted' 'CDS') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000378 label: DsrA RNA + SubClassOf('DsrA RNA' 'Small Regulatory ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000841 label: Spliceosomal Intron Region + SubClassOf('Spliceosomal Intron Region' ObjectSomeValueFrom('part_of' 'Spliceosomal Intron')) + SubClassOf('Spliceosomal Intron Region' 'Primary Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000259 label: Glutaminyl tRNA + SubClassOf('Glutaminyl tRNA' ObjectSomeValueFrom('derives_from' 'Glutamic acid tRNA Primary Transcript')) + SubClassOf('Glutaminyl tRNA' 'tRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000218 label: Glycine tRNA Primary Transcript + SubClassOf('Glycine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001177 label: T Loop + SubClassOf('T Loop' 'tRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000607 label: Unedited Region + SubClassOf('Unedited Region' 'Edited Transcript Feature') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001261 label: Recoded mRNA + SubClassOf('Recoded mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001002 label: rRNA 25S + SubClassOf('rRNA 25S' 'Large Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000409 label: Binding Site + SubClassOf('Binding Site' 'Biological Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000680 label: Non-canonical Start Codon + SubClassOf('Non-canonical Start Codon' 'Start Codon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000198 label: Noncoding Exon + SubClassOf('Noncoding Exon' 'Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000215 label: Cysteine tRNA Primary Transcript + SubClassOf('Cysteine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000593 label: C/D Box snoRNA + SubClassOf('C/D Box snoRNA' 'snoRNA') + SubClassOf('C/D Box snoRNA' ObjectSomeValueFrom('derives_from' 'C/D Box snoRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000580 label: Methylation Guide snoRNA Primary Transcript + SubClassOf('Methylation Guide snoRNA Primary Transcript' 'snoRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000202 label: Three Prime Coding Exon + SubClassOf('Three Prime Coding Exon' 'Coding Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000266 label: Methionyl tRNA + SubClassOf('Methionyl tRNA' 'tRNA') + SubClassOf('Methionyl tRNA' ObjectSomeValueFrom('derives_from' 'Methionine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000397 label: U6atac snRNA + SubClassOf('U6atac snRNA' 'snRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000407 label: rRNA 18S + SubClassOf('rRNA 18S' 'Small Subunit rRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000216 label: Glutamic acid tRNA Primary Transcript + SubClassOf('Glutamic acid tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001176 label: DHU Loop + SubClassOf('DHU Loop' 'tRNA Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000219 label: Histidine tRNA Primary Transcript + SubClassOf('Histidine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000217 label: Glutamine tRNA Primary Transcript + SubClassOf('Glutamine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000989 label: Class II RNA + SubClassOf('Class II RNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001212 label: Plus 2 Translational Frameshift + SubClassOf('Plus 2 Translational Frameshift' 'Translational Frameshift') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000381 label: Group IIA Intron + SubClassOf('Group IIA Intron' 'Group II Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000484 label: Three Prime Coding Exon Noncoding Region + SubClassOf('Three Prime Coding Exon Noncoding Region' ObjectSomeValueFrom('part_of' 'Three Prime Noncoding Exon')) + SubClassOf('Three Prime Coding Exon Noncoding Region' 'Noncoding Region of Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001187 label: Alternatively Spliced Transcript + SubClassOf('Alternatively Spliced Transcript' 'Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000874 label: Edited Transcript by A to I Substitution + SubClassOf('Edited Transcript by A to I Substitution' 'Edited Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001429 label: DNA Binding SIte + SubClassOf('DNA Binding SIte' 'Nucleotide Binding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000190 label: 5' Intron + SubClassOf('5' Intron' 'Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000235 label: Transcription Factor Binding Site + SubClassOf('Transcription Factor Binding Site' 'Nucleotide to Protein Binding Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000852 label: Exon Region + SubClassOf('Exon Region' ObjectSomeValueFrom('part_of' 'Exon')) + SubClassOf('Exon Region' 'Transcript Region') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000233 label: Mature Transcript + SubClassOf('Mature Transcript' 'Transcript') + SubClassOf('Mature Transcript' ObjectSomeValueFrom('derives_from' 'Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0005843 label: rRNA Cleavage RNA + SubClassOf('rRNA Cleavage RNA' 'ncRNA') + SubClassOf('rRNA Cleavage RNA' ObjectSomeValueFrom('derives_from' 'rRNA cleavage snoRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000220 label: Isoleucine tRNA Primary Transcript + SubClassOf('Isoleucine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000589 label: SRP RNA Primary Transcript + SubClassOf('SRP RNA Primary Transcript' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000647 label: pri-miRNA + SubClassOf('pri-miRNA' 'Noncoding Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000734 label: Exemplar mRNA + SubClassOf('Exemplar mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000211 label: Alanine tRNA Primary Transcript + SubClassOf('Alanine tRNA Primary Transcript' 'tRNA Primary Transcript') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000264 label: Leucyl tRNA + SubClassOf('Leucyl tRNA' 'tRNA') + SubClassOf('Leucyl tRNA' ObjectSomeValueFrom('derives_from' 'Leucine tRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0000606 label: Editing Domain + SubClassOf('Editing Domain' 'Edited Transcript Feature') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000648 label: stRNA Primary Transcript + SubClassOf('stRNA Primary Transcript' 'pri-miRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000295 label: U12 Intron + SubClassOf('U12 Intron' 'Spliceosomal Intron') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000200 label: Five Prime Coding Exon + SubClassOf('Five Prime Coding Exon' 'Coding Exon') --- !New Class!: http://purl.org/obo/owl/SO#SO_1001260 label: Internal Shine Dalgarno Sequence + SubClassOf('Internal Shine Dalgarno Sequence' 'Recoding Stimulatory Region') + SubClassOf('Internal Shine Dalgarno Sequence' 'Internal Ribosome Entry Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000646 label: siRNA + SubClassOf('siRNA' 'ncRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000555 label: 5' Clip + SubClassOf('5' Clip' 'Clip') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000013 label: scRNA + SubClassOf('scRNA' 'ncRNA') + SubClassOf('scRNA' ObjectSomeValueFrom('derives_from' 'scRNA Primary Transcript')) --- !New Class!: http://purl.org/obo/owl/SO#SO_0001187 label: Pseudouridylation Guide snoRNA + SubClassOf('Pseudouridylation Guide snoRNA' 'H/ACA Box snoRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000929 label: Edited mRNA + SubClassOf('Edited mRNA' 'mRNA') --- !New Class!: http://purl.org/obo/owl/SO#SO_0001749 label: SL4 Acceptor Site + SubClassOf('SL4 Acceptor Site' 'SL2 Acceptor Site') --- !New Class!: http://purl.org/obo/owl/SO#SO_0000275 label: snoRNA + SubClassOf('snoRNA' ObjectSomeValueFrom('derives_from' 'snoRNA Primary Transcript')) + SubClassOf('snoRNA' 'ncRNA')