OWL
https://creativecommons.org/licenses/by/4.0/
Pance Panov
Ilin Tolovski
Ana Kostovska
Pance Panov
Ontology for describing data on neurodegenerative diseases in patients
Ontology
hasIdentifier
hasFieldComponent
hasAgent
expressedIn
extractedFrom
hasDatatype
hasID
hasInformation
hasInput
hasOutput
isOfGender
isOutputOf
isPreceededBy
occuresAt
originatesFrom
roleOf
hasDate
hasValue
OntoDT
OntoDT: datatype role
OntoDT
StringDatatype
OntoDT
OntoDT: primitive datatype
OntoDT
OntoDT: field component
OntoDT: real datatype
OntoDT
OntoDT: generated datatype
OntoDT
OntoDT: defined datatype
OntoDT
OntoDT: date and time datatype
Generic Ontology of Datatypes (OntoDT)
OntoDT: datatype
OntoDT
OntoDT: discrete datatype
OntoDT
OntoDT: sequence datatype
OntoDT: record datatype
OntoDT
OntoDT: field identifier
assay design
study specification
DM-dataset
data example
OntoDT
OntoDT: boolean datatype
OntoDT
OntoDT: integer datatype
OntoDT: extended datatype
OntoDT
OntoDT: non-numeric primitive datatype
OntoDT
OntoDT: numeric primitive datatype
OntoDT
OntoDT: numeric ordered primitive datatype
OntoDT
OntoDT: non-numeric unordered primitive datatype
OntoDT
OntoDT: non-numeric ordered primitive datatype
OntoDT: positive integer
Geriatric Depression Scale Assessment design
biomarker assessment
clinical assessment
imaging assessment
biospecimen collection
blood sampling
lumbar puncture sampling
vital signs assessment
screening labs assessment
neurological assessment
clinical assessment of study partner
clinical assessment of study subject
clinical assessment of study subject and partner
telephone check assessment
visit
diagnostic data
MRI image
clinical data
biomarker data
PET image
personal and social history data
protocol data
image data score
biospecimen collection data
Telephone visit
Physical visit
clinical assessment questionnaire
Geriatric Depression Scale Assessment Questionnaire
Symbol Digit Modalities Test (SDMT)
MoCA score
Montreal Cognitive Assessment (MoCA)
Semantic Fluency Assessment
Geriatric Depression Scale Assessment
cognitive assessment
http://purl.bioontology.org/ontology/SNOMEDCT/113091000
Magnetic resonance study
MR - Magnetic resonance
MRI
MRI - Magnetic resonance imaging
Magnetic resonance imaging (procedure)
NMR - Nuclear magnetic resonance
Magnetic Resonance Imaging (MRI)
http://purl.bioontology.org/ontology/SNOMEDCT/82918005
PET scan
PET - Positron emission tomography
Positron emission tomography (procedure)
Positron Emission Tomography (PET)
demographic assessment
education assessment
personal history assessment
adverse events assessment
adverse events data
neurological examination data
cognitive assessment data
blood sample data
lumbar puncture data
DNA data
study subject
study participant
MRI image data score
PET image data score
medical device
medical image device
MRI scanner
PET scanner
image provider role
0
4
0
4
Semantic Fluency Assessment Score
Montreal Cognitive Assessment (MoCA) Score
0
93
0
93
Symbol Digit Modalities Test Score
Geriatric Depression (GDS-15) Score
http://purl.bioontology.org/ontology/SNOMEDCT/273481004
Geriatric depression scale (assessment scale)
GDS - Geriatric depression scale
Geriatric Depression Scale (GDS-15)
SNOMED CT
0
15
0
15
Geriatric Depression Scale (GDS-15) Datatype
http://purl.bioontology.org/ontology/SNOMEDCT/443597000
Model of creative ability assessment scale
Montreal Cognitive Assessment scale (MoCA scale)
SNOMED CT
Montreal Cognitive Assessment Datatype (MoCA Datatype)
The scale for digit symbol substitution assessment has positive integer values that range from 0 to 93.
Symbol Digit Modalities Test Scale
Symbol Digit Modalities Datatype
Semantic Fluency Assessment Scale
0
4
0
4
Semantic Fluency Datatype
participant ID
participant rooster ID
site ID
specification entity
assessment scale
visit specification
person
cohort
Montreal Cognitive Assessment Questionnaire
Semantic Fluency Assessment Questionnaire
Symbol Digit Modalities Assessment Questionnaire
Visit Code
Visit Code Datatype
cognitive assessment questionnaire
study participant specification
study participant occurence specification
new study participant
Age Datatype
Marital Status Datatype
Origin Protocol Datatype
Race Datatype
Sex Datatype
vital signs data
demographics data
age data
ethnicity data
race data
sex data
education data
personal history data
marital status data
cohort specification
doctor
PPMI cohort
Magnetic Resonance Imaging (MRI) design
Positron Emission Tomography (PET) design
Semantic Fluency Assessment design
adverse events assessment design
biomarker assessment design
biospecimen collection design
clinical history taking design
demographic assessment design
education assessment design
neurological assessment design
personal history assessment design
screening labs assessment design
vital signs assessment design
Montreal Cognitive Assessment (MoCA) design
Symbol Digit Modalities Test (SDMT) design
OntoDT
OntoDT: identifier
Ontology of Biomedical Investigations
OBI: data representational model