@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/OMIT/23/RackMultipart20131212-23818-18u8ud7 @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/OMIT/22/RackMultipart20131211-16671-183qb1f @ File Written at 2013.12.12 at 03:27:38 PST @ Number of classes changed: 12 @ Number of classes added: 13 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#SO_0000704 label: gene + SubClassOf('gene' ObjectSomeValueFrom(OMIT_involvedInTumor 'Tumor')) - SubClassOf('gene' ObjectSomeValueFrom('involvedInTumor' 'Tumor')) --- Class Changed: http://www.geneontology.org/go#snap_Continuant label: continuant + SubClassOf('continuant' ObjectSomeValueFrom(OMIT_fromTaxon 'Organism')) - SubClassOf('continuant' ObjectSomeValueFrom('fromTaxon' 'Organism')) --- Class Changed: http://www.geneontology.org/go#GO_0005623 label: cell + SubClassOf('cell' ObjectSomeValueFrom(OMIT_geneExpressedln 'candidate_gene')) - SubClassOf('cell' ObjectSomeValueFrom('geneExpressedln' 'candidate_gene')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000122 label: Disease + SubClassOf('Disease' ObjectSomeValueFrom(OMIT_treatedBy 'Treatment')) + SubClassOf('Disease' ObjectSomeValueFrom(OMIT_causedBy 'HarmfulRole')) + SubClassOf('Disease' ObjectSomeValueFrom(OMIT_affects 'AnatomicFeature')) - SubClassOf('Disease' ObjectSomeValueFrom('affects' 'AnatomicFeature')) - SubClassOf('Disease' ObjectSomeValueFrom('causedBy' 'HarmfulRole')) - SubClassOf('Disease' ObjectSomeValueFrom('treatedBy' 'Treatment')) --- Class Changed: http://www.geneontology.org/go#PR_000000001 label: protein + SubClassOf('protein' ObjectSomeValueFrom(OMIT_regulateProtein 'miRNA')) - SubClassOf('protein' ObjectSomeValueFrom('regulateProtein' 'miRNA')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000123 label: Treatment + SubClassOf('Treatment' ObjectSomeValueFrom(OMIT_treats 'Disease')) - SubClassOf('Treatment' ObjectSomeValueFrom('treats' 'Disease')) --- Class Changed: http://www.geneontology.org/go#SO_0000276 label: miRNA + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_affectsTumor 'Tumor')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_upRegulateTarget 'gene')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_regulateEvent 'processual_entity')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_regulatemRNATranslation 'mRNA')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_hasBinding 'MiRNABinding')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_regulateTarget 'gene')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_upRegulateEvent 'processual_entity')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_inOrganism 'Organism')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_miRNAExpressedln 'process')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_regulatencRNAFunction 'ncRNA')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_downRegulateEvent 'processual_entity')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_downRegulateTarget 'gene')) + SubClassOf('miRNA' ObjectSomeValueFrom(OMIT_inOrgan 'AnatomicFeature')) - SubClassOf('miRNA' ObjectSomeValueFrom('affectsTumor' 'Tumor')) - SubClassOf('miRNA' ObjectSomeValueFrom('miRNAExpressedln' 'process')) - SubClassOf('miRNA' ObjectSomeValueFrom('upRegulateEvent' 'processual_entity')) - SubClassOf('miRNA' ObjectSomeValueFrom('regulateTarget' 'gene')) - SubClassOf('miRNA' ObjectSomeValueFrom('hasBinding' 'MiRNABinding')) - SubClassOf('miRNA' ObjectSomeValueFrom('regulateEvent' 'processual_entity')) - SubClassOf('miRNA' ObjectSomeValueFrom('inOrgan' 'AnatomicFeature')) - SubClassOf('miRNA' ObjectSomeValueFrom('regulatemRNATranslation' 'mRNA')) - SubClassOf('miRNA' ObjectSomeValueFrom('upRegulateTarget' 'gene')) - SubClassOf('miRNA' ObjectSomeValueFrom('inOrganism' 'Organism')) - SubClassOf('miRNA' ObjectSomeValueFrom('regulatencRNAFunction' 'ncRNA')) - SubClassOf('miRNA' ObjectSomeValueFrom('downRegulateTarget' 'gene')) - SubClassOf('miRNA' ObjectSomeValueFrom('downRegulateEvent' 'processual_entity')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000806 label: AdvantageousRegulation + SubClassOf('AdvantageousRegulation' ObjectSomeValueFrom(OMIT_resultedFrom 'TEInsertion')) - SubClassOf('AdvantageousRegulation' ObjectSomeValueFrom('resultedFrom' 'TEInsertion')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000114 label: ExperimentalValidation + SubClassOf('ExperimentalValidation' ObjectSomeValueFrom(OMIT_experimentContainsMiRNA 'miRNA')) + SubClassOf('ExperimentalValidation' ObjectSomeValueFrom(OMIT_experimentContainsTarget 'gene')) - SubClassOf('ExperimentalValidation' ObjectSomeValueFrom('experimentContainsMiRNA' 'miRNA')) - SubClassOf('ExperimentalValidation' ObjectSomeValueFrom('experimentContainsTarget' 'gene')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000040 label: HarmfulRole + SubClassOf('HarmfulRole' ObjectSomeValueFrom(OMIT_causes 'Disease')) - SubClassOf('HarmfulRole' ObjectSomeValueFrom('causes' 'Disease')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000801 label: TEJuxtaposition + SubClassOf('TEJuxtaposition' ObjectSomeValueFrom(OMIT_resultedFrom 'TEInsertion')) - SubClassOf('TEJuxtaposition' ObjectSomeValueFrom('resultedFrom' 'TEInsertion')) --- Class Changed: http://www.geneontology.org/go#OMIT_0000115 label: MiRNABinding + SubClassOf('MiRNABinding' ObjectSomeValueFrom(OMIT_involvedInEvent 'processual_entity')) + SubClassOf('MiRNABinding' ObjectSomeValueFrom(OMIT_hasPrediction 'gene')) + SubClassOf('MiRNABinding' ObjectSomeValueFrom(OMIT_hasValidation 'ExperimentalValidation')) + SubClassOf('MiRNABinding' ObjectSomeValueFrom(OMIT_hasMiRNA 'miRNA')) + SubClassOf('MiRNABinding' ObjectSomeValueFrom(OMIT_hasTarget 'gene')) - SubClassOf('MiRNABinding' ObjectSomeValueFrom('hasValidation' 'ExperimentalValidation')) - SubClassOf('MiRNABinding' ObjectSomeValueFrom('hasMiRNA' 'miRNA')) - SubClassOf('MiRNABinding' ObjectSomeValueFrom('involvedInEvent' 'processual_entity')) - SubClassOf('MiRNABinding' ObjectSomeValueFrom('hasTarget' 'gene')) - SubClassOf('MiRNABinding' ObjectSomeValueFrom('hasPrediction' 'gene')) @New Classes --- !New Class!: http://www.geneontology.org/go#SO_0000720 label: foreign_transposable_element + SubClassOf('foreign_transposable_element' 'transposable_element') --- !New Class!: http://www.geneontology.org/go#SO_0000364 label: transposable_element_flanking_region + SubClassOf('transposable_element_flanking_region' 'flanking_region') --- !New Class!: http://www.geneontology.org/go#SO_0001412 label: topologically_defined_region + SubClassOf('topologically_defined_region' 'region') --- !New Class!: http://www.geneontology.org/go#SO_0000798 label: engineered_transposable_element + SubClassOf('engineered_transposable_element' 'transposable_element') --- !New Class!: http://www.geneontology.org/go#SO_0000101 label: transposable_element + SubClassOf('transposable_element' 'integrated_mobile_genetic_element') --- !New Class!: http://www.geneontology.org/go#SO_0000797 label: natural_transposable_element + SubClassOf('natural_transposable_element' 'transposable_element') --- !New Class!: http://www.geneontology.org/go#SO_0000366 label: insertion_site + SubClassOf('insertion_site' 'junction') --- !New Class!: http://www.geneontology.org/go#SO_0000000 label: integrated_mobile_genetic_element + SubClassOf('integrated_mobile_genetic_element' 'mobile_genetic_element') --- !New Class!: http://www.geneontology.org/go#SO_0001897 label: transposable_element_pseudogene + SubClassOf('transposable_element_pseudogene' ObjectSomeValueFrom('part_of' 'transposable_element')) + SubClassOf('transposable_element_pseudogene' 'pseudogene') --- !New Class!: http://www.geneontology.org/go#SO_0001896 label: transposable_element_CDS + SubClassOf('transposable_element_CDS' ObjectSomeValueFrom('part_of' 'transposable_element')) + SubClassOf('transposable_element_CDS' 'transcript_region') --- !New Class!: http://www.geneontology.org/go#SO_0000239 label: flanking_region + SubClassOf('flanking_region' 'topologically_defined_region') --- !New Class!: http://www.geneontology.org/go#SO_0000368 label: transposable_element_insertion_site + SubClassOf('transposable_element_insertion_site' 'insertion_site') --- !New Class!: http://www.geneontology.org/go#SO_0000699 label: junction + SubClassOf('junction' 'sequence_feature')