format-version: 1.2 data-version: releases/2018-01-05 date: 01:01:2018 14:22 saved-by: siegele auto-generated-by: OBO-Edit 2.3.1 subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" subsetdef: attribute_slim "Attribute slim" subsetdef: cell_quality "cell_quality" subsetdef: Cross_product_review "Involved_in" subsetdef: disposition_slim "Disposition slim" subsetdef: goantislim_grouping "Grouping classes that can be excluded" subsetdef: gocheck_do_not_annotate "Term not to be used for direct annotation" subsetdef: gocheck_do_not_manually_annotate "Term not to be used for direct manual annotation" subsetdef: goslim_aspergillus "Aspergillus GO slim" subsetdef: goslim_candida "Candida GO slim" subsetdef: goslim_generic "Generic GO slim" subsetdef: goslim_goa "GOA and proteome slim" subsetdef: goslim_metagenomics "Metagenomics GO slim" subsetdef: goslim_pir "PIR GO slim" subsetdef: goslim_plant "Plant GO slim" subsetdef: goslim_pombe "Fission yeast GO slim" subsetdef: goslim_virus "Viral GO slim" subsetdef: goslim_yeast "Yeast GO slim" subsetdef: gosubset_prok "Prokaryotic GO subset" subsetdef: hpo_slim "Human phenotype slim" subsetdef: mf_needs_review "Catalytic activity terms in need of attention" subsetdef: mpath_slim "Pathology slim" subsetdef: relational_slim "Relational slim: types of quality that require an additional entity in order to exist" subsetdef: scalar_slim "Scalar slim" subsetdef: SOFA "SO feature annotation" subsetdef: termgenie_unvetted "Terms created by TermGenie that do not follow a template and require additional vetting by editors" subsetdef: value_slim "Value slim" subsetdef: virus_checked "Viral overhaul terms" synonymtypedef: BRAND_NAME "BRAND NAME" synonymtypedef: FORMULA "FORMULA" synonymtypedef: InChI "InChI" synonymtypedef: InChIKey "InChIKey" synonymtypedef: INN "INN" synonymtypedef: IUPAC_NAME "IUPAC NAME" synonymtypedef: SMILES "SMILES" synonymtypedef: systematic_synonym "Systematic synonym" EXACT default-namespace: microbial_phenotype remark: select is_a closure ontology: omp [Term] id: CHEBI:24431 name: chemical entity namespace: chebi_ontology def: "A chemical entity is a physical entity of interest in chemistry including molecular entities, parts thereof, and chemical substances." [CHEBI:Team] [Term] id: CHEBI:24432 name: biological role namespace: chebi_ontology def: "A role played by the molecular entity or part thereof within a biological context." [CHEBI:Team] is_a: CHEBI:50906 ! role [Term] id: CHEBI:25944 name: pesticide namespace: chebi_ontology def: "Strictly, a substance intended to kill pests. In common usage, any substance used for controlling, preventing, or destroying animal, microbiological or plant pests." [CHEBI:Team] xref: Wikipedia:Pesticide is_a: CHEBI:33232 ! application [Term] id: CHEBI:33232 name: application namespace: chebi_ontology def: "Intended use of the molecular entity or part thereof by humans." [CHEBI:Team] is_a: CHEBI:50906 ! role [Term] id: CHEBI:33281 name: antimicrobial agent namespace: chebi_ontology def: "A substance that kills or slows the growth of microorganisms, including bacteria, viruses, fungi and protozoans." [CHEBI:Team] synonym: "antimicrobial" RELATED [] synonym: "microbiocides" RELATED [] is_a: CHEBI:24432 ! biological role is_a: CHEBI:25944 ! pesticide [Term] id: CHEBI:50906 name: role namespace: chebi_ontology def: "A role is a particular behaviour which a material entity may exhibit." [CHEBI:Team] [Term] id: GO:0000003 name: reproduction namespace: biological_process alt_id: GO:0019952 alt_id: GO:0050876 def: "The production of new individuals that contain some portion of genetic material inherited from one or more parent organisms." [GOC:go_curators, GOC:isa_complete, GOC:jl, ISBN:0198506732] subset: goslim_generic subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "reproductive physiological process" EXACT [] xref: Wikipedia:Reproduction is_a: GO:0008150 ! biological_process [Term] id: GO:0001539 name: cilium or flagellum-dependent cell motility namespace: biological_process def: "Cell motility due to movement of eukaryotic cilia or bacterial-type flagella or archaeal-type flagella." [GOC:cilia, GOC:hjd, GOC:krc] comment: Note that we deem eukaryotic cilia and microtubule-based flagella to be equivalent, while the bacterial- and archaeal-type flagella have a different structure. The former are microtubule-based structures that lash back and forth and are present only in eukaryotes, while the latter achieve motility by rotation. Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. These three structures never co-exist in the same organism. Therefore, GO:0001539 'cilium or flagellum-dependent cell motility' is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term. Direct annotations to GO:0001539 'cilium or flagellum-dependent cell motility' may be amended during annotation QC. subset: gocheck_do_not_manually_annotate subset: gosubset_prok synonym: "ciliary or bacterial-type flagellar motility" RELATED [] synonym: "ciliary/flagellar motility" EXACT [] is_a: GO:0048870 ! cell motility [Term] id: GO:0005575 name: cellular_component namespace: cellular_component alt_id: GO:0008372 def: "The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together." [GOC:go_curators, NIF_Subcellular:sao-1337158144] comment: Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. subset: goslim_aspergillus subset: goslim_candida subset: goslim_generic subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: goslim_yeast subset: gosubset_prok synonym: "cellular component" EXACT [] synonym: "subcellular entity" RELATED [NIF_Subcellular:nlx_subcell_100315] xref: NIF_Subcellular:sao1337158144 [Term] id: GO:0005623 name: cell namespace: cellular_component def: "The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope." [GOC:go_curators] subset: goslim_generic subset: goslim_plant subset: gosubset_prok xref: NIF_Subcellular:sao1813327414 xref: Wikipedia:Cell_(biology) is_a: GO:0005575 ! cellular_component [Term] id: GO:0006139 name: nucleobase-containing compound metabolic process namespace: biological_process alt_id: GO:0055134 def: "Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:ai] subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" EXACT [] synonym: "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] synonym: "nucleobase, nucleoside and nucleotide metabolic process" RELATED [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process" RELATED [GOC:dph, GOC:tb] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid metabolism" EXACT [] is_a: GO:0006725 ! cellular aromatic compound metabolic process is_a: GO:0034641 ! cellular nitrogen compound metabolic process is_a: GO:0044238 ! primary metabolic process is_a: GO:0046483 ! heterocycle metabolic process is_a: GO:1901360 ! organic cyclic compound metabolic process [Term] id: GO:0006259 name: DNA metabolic process namespace: biological_process alt_id: GO:0055132 def: "Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides." [ISBN:0198506732] subset: goslim_aspergillus subset: goslim_candida subset: goslim_generic subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "cellular DNA metabolism" EXACT [] synonym: "DNA metabolism" EXACT [] is_a: GO:0044260 ! cellular macromolecule metabolic process is_a: GO:0090304 ! nucleic acid metabolic process [Term] id: GO:0006260 name: DNA replication namespace: biological_process alt_id: GO:0055133 def: "The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA." [GOC:mah] comment: See also the biological process terms 'DNA-dependent DNA replication ; GO:0006261' and 'RNA-dependent DNA replication ; GO:0006278'. subset: goslim_pir subset: goslim_pombe subset: goslim_yeast subset: gosubset_prok xref: Reactome:REACT_100559 "Activation of ATR in response to replication stress, Mus musculus" xref: Reactome:REACT_101280 "Activation of claspin, Xenopus tropicalis" xref: Reactome:REACT_101497 "Activation of claspin, Bos taurus" xref: Reactome:REACT_102679 "Activation of ATR in response to replication stress, Gallus gallus" xref: Reactome:REACT_103614 "Stalling of DNA replication fork and RPA binding, Taeniopygia guttata" xref: Reactome:REACT_104547 "Recruitment and activation of Chk1, Gallus gallus" xref: Reactome:REACT_105292 "Activation of ATR in response to replication stress, Xenopus tropicalis" xref: Reactome:REACT_105467 "Loading of claspin onto DNA during replication origin firing, Danio rerio" xref: Reactome:REACT_105835 "Stalling of DNA replication fork and RPA binding, Gallus gallus" xref: Reactome:REACT_106018 "Recruitment of Rad17-RFC complex to DNA, Gallus gallus" xref: Reactome:REACT_106104 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Bos taurus" xref: Reactome:REACT_106382 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Drosophila melanogaster" xref: Reactome:REACT_106434 "Activation of claspin, Canis familiaris" xref: Reactome:REACT_106732 "Recruitment and activation of Chk1, Canis familiaris" xref: Reactome:REACT_107075 "Activation of ATR in response to replication stress, Danio rerio" xref: Reactome:REACT_107423 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Caenorhabditis elegans" xref: Reactome:REACT_108461 "Recruitment and activation of Chk1, Bos taurus" xref: Reactome:REACT_108634 "Loading of claspin onto DNA during replication origin firing, Mus musculus" xref: Reactome:REACT_108739 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Xenopus tropicalis" xref: Reactome:REACT_108768 "Activation of ATR in response to replication stress, Bos taurus" xref: Reactome:REACT_108929 "Activation of ATR in response to replication stress, Drosophila melanogaster" xref: Reactome:REACT_109137 "Stalling of DNA replication fork and RPA binding, Rattus norvegicus" xref: Reactome:REACT_112472 "Activation of ATR in response to replication stress, Saccharomyces cerevisiae" xref: Reactome:REACT_113703 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Gallus gallus" xref: Reactome:REACT_29423 "Activation of ATR in response to replication stress, Schizosaccharomyces pombe" xref: Reactome:REACT_29444 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Taeniopygia guttata" xref: Reactome:REACT_29691 "Activation of ATR in response to replication stress, Rattus norvegicus" xref: Reactome:REACT_29764 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Taeniopygia guttata" xref: Reactome:REACT_30149 "Activation of claspin, Rattus norvegicus" xref: Reactome:REACT_31024 "Recruitment of Rad17-RFC complex to DNA, Xenopus tropicalis" xref: Reactome:REACT_31919 "Loading of claspin onto DNA during replication origin firing, Rattus norvegicus" xref: Reactome:REACT_32546 "Recruitment of Rad17-RFC complex to DNA, Mus musculus" xref: Reactome:REACT_32932 "Recruitment and activation of Chk1, Taeniopygia guttata" xref: Reactome:REACT_33572 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Dictyostelium discoideum" xref: Reactome:REACT_33874 "Recruitment and activation of Chk1, Xenopus tropicalis" xref: Reactome:REACT_50018 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Rattus norvegicus" xref: Reactome:REACT_53588 "Loading of claspin onto DNA during replication origin firing, Canis familiaris" xref: Reactome:REACT_6729 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Homo sapiens" xref: Reactome:REACT_6738 "Loading of claspin onto DNA during replication origin firing, Homo sapiens" xref: Reactome:REACT_6750 "Activation of claspin, Homo sapiens" xref: Reactome:REACT_6769 "Activation of ATR in response to replication stress, Homo sapiens" xref: Reactome:REACT_6798 "Recruitment of Rad17-RFC complex to DNA, Homo sapiens" xref: Reactome:REACT_6869 "Recruitment and activation of Chk1, Homo sapiens" xref: Reactome:REACT_6936 "Stalling of DNA replication fork and RPA binding, Homo sapiens" xref: Reactome:REACT_6939 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Homo sapiens" xref: Reactome:REACT_77532 "Stalling of DNA replication fork and RPA binding, Canis familiaris" xref: Reactome:REACT_79188 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Canis familiaris" xref: Reactome:REACT_79450 "Activation of ATR in response to replication stress, Dictyostelium discoideum" xref: Reactome:REACT_80432 "Loading of claspin onto DNA during replication origin firing, Taeniopygia guttata" xref: Reactome:REACT_80571 "Activation of claspin, Mus musculus" xref: Reactome:REACT_80896 "Recruitment and activation of Chk1, Sus scrofa" xref: Reactome:REACT_80988 "Loading of claspin onto DNA during replication origin firing, Bos taurus" xref: Reactome:REACT_81803 "Recruitment of Rad17-RFC complex to DNA, Canis familiaris" xref: Reactome:REACT_83095 "Recruitment of Rad17-RFC complex to DNA, Danio rerio" xref: Reactome:REACT_84829 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Danio rerio" xref: Reactome:REACT_85561 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Rattus norvegicus" xref: Reactome:REACT_86410 "Stalling of DNA replication fork and RPA binding, Mus musculus" xref: Reactome:REACT_86739 "Recruitment and activation of Chk1, Rattus norvegicus" xref: Reactome:REACT_87233 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Canis familiaris" xref: Reactome:REACT_87449 "Recruitment of Rad17-RFC complex to DNA, Rattus norvegicus" xref: Reactome:REACT_87590 "Recruitment of Rad17-RFC complex to DNA, Bos taurus" xref: Reactome:REACT_88085 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Gallus gallus" xref: Reactome:REACT_88384 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Schizosaccharomyces pombe" xref: Reactome:REACT_88529 "Activation of claspin, Gallus gallus" xref: Reactome:REACT_89355 "Activation of claspin, Danio rerio" xref: Reactome:REACT_89439 "Activation of ATR in response to replication stress, Sus scrofa" xref: Reactome:REACT_89725 "Loading of claspin onto DNA during replication origin firing, Drosophila melanogaster" xref: Reactome:REACT_90512 "Stalling of DNA replication fork and RPA binding, Bos taurus" xref: Reactome:REACT_90809 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Danio rerio" xref: Reactome:REACT_90838 "Recruitment of Rad17-RFC complex to DNA, Taeniopygia guttata" xref: Reactome:REACT_91184 "Recruitment and activation of Chk1, Danio rerio" xref: Reactome:REACT_91302 "Activation of ATR in response to replication stress, Canis familiaris" xref: Reactome:REACT_92527 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Mus musculus" xref: Reactome:REACT_92644 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Xenopus tropicalis" xref: Reactome:REACT_92706 "Stalling of DNA replication fork and RPA binding, Danio rerio" xref: Reactome:REACT_94983 "Stalling of DNA replication fork and RPA binding, Xenopus tropicalis" xref: Reactome:REACT_95253 "Activation of ATR in response to replication stress, Taeniopygia guttata" xref: Reactome:REACT_95329 "Activation of claspin, Taeniopygia guttata" xref: Reactome:REACT_96115 "Binding of ATR-ATRIP to the RPA-ssDNA complex, Mus musculus" xref: Reactome:REACT_96804 "Recruitment and activation of Chk1, Mus musculus" xref: Reactome:REACT_96998 "Recruitment of the Rad9-Hus1-Rad1 complex to DNA, Bos taurus" xref: Reactome:REACT_97204 "Loading of claspin onto DNA during replication origin firing, Gallus gallus" xref: Reactome:REACT_97726 "Activation of ATR in response to replication stress, Caenorhabditis elegans" xref: Reactome:REACT_99948 "Loading of claspin onto DNA during replication origin firing, Xenopus tropicalis" xref: Wikipedia:DNA_replication is_a: GO:0006259 ! DNA metabolic process is_a: GO:0034645 ! cellular macromolecule biosynthetic process [Term] id: GO:0006351 name: transcription, DNA-templated namespace: biological_process alt_id: GO:0006350 alt_id: GO:0061018 alt_id: GO:0061022 def: "The cellular synthesis of RNA on a template of DNA." [GOC:jl, GOC:txnOH] subset: goslim_aspergillus subset: goslim_metagenomics subset: goslim_pombe subset: gosubset_prok synonym: "cellular transcription" BROAD [] synonym: "cellular transcription, DNA-dependent" EXACT [] synonym: "DNA-dependent transcription" EXACT [] synonym: "transcription" BROAD [] synonym: "transcription regulator activity" RELATED [] synonym: "transcription, DNA-dependent" EXACT [GOC:txnOH] xref: Wikipedia:Transcription_(genetics) is_a: GO:0032774 ! RNA biosynthetic process is_a: GO:0034645 ! cellular macromolecule biosynthetic process relationship: part_of GO:0010467 ! gene expression [Term] id: GO:0006412 name: translation namespace: biological_process alt_id: GO:0006416 alt_id: GO:0006453 alt_id: GO:0043037 def: "The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome." [GOC:go_curators] subset: goslim_aspergillus subset: goslim_candida subset: goslim_generic subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "protein anabolism" EXACT [] synonym: "protein biosynthesis" EXACT [] synonym: "protein biosynthetic process" EXACT [GOC:curators] synonym: "protein formation" EXACT [] synonym: "protein synthesis" EXACT [] synonym: "protein translation" EXACT [] xref: Reactome:REACT_100338 "Translation, Sus scrofa" xref: Reactome:REACT_100851 "Translation, Saccharomyces cerevisiae" xref: Reactome:REACT_101045 "Translation, Dictyostelium discoideum" xref: Reactome:REACT_101324 "Translation, Canis familiaris" xref: Reactome:REACT_1014 "Translation, Homo sapiens" xref: Reactome:REACT_103420 "Translation, Plasmodium falciparum" xref: Reactome:REACT_105544 "Translation, Arabidopsis thaliana" xref: Reactome:REACT_29980 "Translation, Bos taurus" xref: Reactome:REACT_33559 "Translation, Rattus norvegicus" xref: Reactome:REACT_77710 "Translation, Drosophila melanogaster" xref: Reactome:REACT_79784 "Translation, Danio rerio" xref: Reactome:REACT_81734 "Translation, Schizosaccharomyces pombe" xref: Reactome:REACT_81833 "Translation, Caenorhabditis elegans" xref: Reactome:REACT_82171 "Translation, Xenopus tropicalis" xref: Reactome:REACT_83429 "Translation, Taeniopygia guttata" xref: Reactome:REACT_83530 "Translation, Gallus gallus" xref: Reactome:REACT_86996 "Translation, Oryza sativa" xref: Reactome:REACT_95535 "Translation, Mus musculus" xref: Reactome:REACT_96394 "Translation, Escherichia coli" xref: Wikipedia:Translation_(genetics) is_a: GO:0034645 ! cellular macromolecule biosynthetic process is_a: GO:0044267 ! cellular protein metabolic process relationship: part_of GO:0010467 ! gene expression [Term] id: GO:0006725 name: cellular aromatic compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving aromatic compounds, any organic compound characterized by one or more planar rings, each of which contains conjugated double bonds and delocalized pi electrons, as carried out by individual cells." [GOC:ai, ISBN:0198506732] subset: goslim_pir subset: gosubset_prok synonym: "aromatic compound metabolism" EXACT [] synonym: "aromatic hydrocarbon metabolic process" NARROW [] synonym: "aromatic hydrocarbon metabolism" NARROW [] is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0006807 name: nitrogen compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen, including (but not limited to) nitrogen fixation, nitrification, denitrification, assimilatory/dissimilatory nitrate reduction and the interconversion of nitrogenous organic matter and ammonium." [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732] comment: Note that amino acid and derivative metabolism should not be annotated here. Instead use the 'amino acid and derivative metabolism' node. subset: goslim_metagenomics subset: goslim_pir subset: gosubset_prok synonym: "nitrogen compound metabolism" EXACT [] is_a: GO:0008152 ! metabolic process [Term] id: GO:0006928 name: cellular component movement namespace: biological_process def: "The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore." [GOC:dgh, GOC:dph, GOC:jl, GOC:mlg] comment: Note that in GO cellular components include whole cells (cell is_a cellular component). subset: goslim_pir subset: gosubset_prok synonym: "cell movement" RELATED [] synonym: "cellular component motion" EXACT [GOC:dph, GOC:jl] is_a: GO:0044763 ! single-organism cellular process [Term] id: GO:0006935 name: chemotaxis namespace: biological_process def: "The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis)." [ISBN:0198506732] subset: goslim_metagenomics subset: gosubset_prok synonym: "taxis in response to chemical stimulus" EXACT [] xref: Wikipedia:Chemotaxis is_a: GO:0042221 ! response to chemical is_a: GO:0042330 ! taxis [Term] id: GO:0007059 name: chromosome segregation namespace: biological_process def: "The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the condensation of chromosomes, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles." [GOC:jl, GOC:mah, GOC:mtg_cell_cycle, GOC:vw] subset: goslim_generic subset: goslim_pir subset: goslim_pombe subset: goslim_yeast subset: gosubset_prok synonym: "chromosome division" EXACT [] synonym: "chromosome transmission" RELATED [] xref: Wikipedia:Chromosome_segregation is_a: GO:0044763 ! single-organism cellular process [Term] id: GO:0008150 name: biological_process namespace: biological_process alt_id: GO:0000004 alt_id: GO:0007582 def: "Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end." [GOC:go_curators, GOC:isa_complete] comment: Note that, in addition to forming the root of the biological process ontology, this term is recommended for use for the annotation of gene products whose biological process is unknown. Note that when this term is used for annotation, it indicates that no information was available about the biological process of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this. subset: goslim_aspergillus subset: goslim_candida subset: goslim_generic subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: goslim_pombe subset: goslim_yeast subset: gosubset_prok synonym: "biological process" EXACT [] synonym: "physiological process" EXACT [] xref: Wikipedia:Biological_process [Term] id: GO:0008152 name: metabolic process namespace: biological_process def: "The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684] comment: Note that metabolic processes do not include single functions or processes such as protein-protein interactions, protein-nucleic acids, nor receptor-ligand interactions. subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "metabolic process resulting in cell growth" NARROW [] synonym: "metabolism" EXACT [] synonym: "metabolism resulting in cell growth" NARROW [] xref: Wikipedia:Metabolism is_a: GO:0008150 ! biological_process [Term] id: GO:0009058 name: biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684] subset: goslim_generic subset: goslim_metagenomics subset: goslim_plant subset: gosubset_prok synonym: "anabolism" EXACT [] synonym: "biosynthesis" EXACT [] synonym: "formation" EXACT [] synonym: "synthesis" EXACT [] xref: Wikipedia:Anabolism is_a: GO:0008152 ! metabolic process [Term] id: GO:0009059 name: macromolecule biosynthetic process namespace: biological_process alt_id: GO:0043284 def: "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah] subset: gosubset_prok synonym: "biopolymer biosynthetic process" EXACT [GOC:mtg_chebi_dec09] synonym: "macromolecule anabolism" EXACT [] synonym: "macromolecule biosynthesis" EXACT [] synonym: "macromolecule formation" EXACT [] synonym: "macromolecule synthesis" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:1901576 ! organic substance biosynthetic process [Term] id: GO:0009453 name: energy taxis namespace: biological_process def: "The directed movement of a motile cell or organism in response to physical parameters involved in energy generation, such as light, oxygen, and oxidizable substrates." [GOC:jl, PMID:11029423] subset: gosubset_prok synonym: "energytaxis" EXACT [] synonym: "taxis in response to energy source" EXACT [] is_a: GO:0042330 ! taxis [Term] id: GO:0009454 name: aerotaxis namespace: biological_process def: "The directed movement of a motile cell or organism in response to environmental oxygen." [GOC:jl, ISBN:0192801023] subset: gosubset_prok synonym: "taxis in response to atmospheric oxygen" EXACT [] is_a: GO:0006935 ! chemotaxis is_a: GO:0009453 ! energy taxis [Term] id: GO:0009605 name: response to external stimulus namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus." [GOC:hb] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. subset: gocheck_do_not_manually_annotate subset: goslim_plant subset: gosubset_prok synonym: "response to environmental stimulus" EXACT [] is_a: GO:0050896 ! response to stimulus [Term] id: GO:0009847 name: spore germination namespace: biological_process def: "The physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall)." [GOC:lr] subset: gosubset_prok is_a: GO:0032502 ! developmental process [Term] id: GO:0009892 name: negative regulation of metabolic process namespace: biological_process def: "Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] subset: gosubset_prok synonym: "down regulation of metabolic process" EXACT [] synonym: "down-regulation of metabolic process" EXACT [] synonym: "downregulation of metabolic process" EXACT [] synonym: "inhibition of metabolic process" NARROW [] synonym: "negative regulation of metabolism" EXACT [] is_a: GO:0019222 ! regulation of metabolic process is_a: GO:0048519 ! negative regulation of biological process relationship: negatively_regulates GO:0008152 ! metabolic process [Term] id: GO:0009987 name: cellular process namespace: biological_process alt_id: GO:0008151 alt_id: GO:0050875 def: "Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete] subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "cell growth and/or maintenance" NARROW [] synonym: "cell physiology" EXACT [] synonym: "cellular physiological process" EXACT [] is_a: GO:0008150 ! biological_process [Term] id: GO:0010467 name: gene expression namespace: biological_process def: "The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form." [GOC:dph, GOC:tb] subset: gosubset_prok xref: Reactome:REACT_100537 "Gene Expression, Xenopus tropicalis" xref: Reactome:REACT_101147 "Gene Expression, Danio rerio" xref: Reactome:REACT_101952 "Gene Expression, Sus scrofa" xref: Reactome:REACT_105649 "Gene Expression, Drosophila melanogaster" xref: Reactome:REACT_108313 "Gene Expression, Caenorhabditis elegans" xref: Reactome:REACT_29068 "Gene Expression, Escherichia coli" xref: Reactome:REACT_34240 "Gene Expression, Staphylococcus aureus N315" xref: Reactome:REACT_71 "Gene Expression, Homo sapiens" xref: Reactome:REACT_78136 "Gene Expression, Mus musculus" xref: Reactome:REACT_78959 "Gene Expression, Taeniopygia guttata" xref: Reactome:REACT_79662 "Gene Expression, Plasmodium falciparum" xref: Reactome:REACT_85241 "Gene Expression, Oryza sativa" xref: Reactome:REACT_85359 "Gene Expression, Gallus gallus" xref: Reactome:REACT_86357 "Gene Expression, Canis familiaris" xref: Reactome:REACT_89816 "Gene Expression, Mycobacterium tuberculosis" xref: Reactome:REACT_91657 "Gene Expression, Arabidopsis thaliana" xref: Reactome:REACT_91965 "Gene Expression, Rattus norvegicus" xref: Reactome:REACT_93586 "Gene Expression, Dictyostelium discoideum" xref: Reactome:REACT_93968 "Gene Expression, Bos taurus" xref: Reactome:REACT_94814 "Gene Expression, Schizosaccharomyces pombe" xref: Reactome:REACT_98256 "Gene Expression, Saccharomyces cerevisiae" xref: Wikipedia:Gene_expression is_a: GO:0043170 ! macromolecule metabolic process [Term] id: GO:0010468 name: regulation of gene expression namespace: biological_process def: "Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form." [GOC:dph, GOC:tb] subset: gosubset_prok synonym: "regulation of gene product expression" RELATED [GOC:curators] synonym: "regulation of protein expression" NARROW [GOC:curators] xref: Wikipedia:Regulation_of_gene_expression is_a: GO:0060255 ! regulation of macromolecule metabolic process relationship: regulates GO:0010467 ! gene expression [Term] id: GO:0010605 name: negative regulation of macromolecule metabolic process namespace: biological_process def: "Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] is_a: GO:0009892 ! negative regulation of metabolic process is_a: GO:0060255 ! regulation of macromolecule metabolic process relationship: negatively_regulates GO:0043170 ! macromolecule metabolic process [Term] id: GO:0010629 name: negative regulation of gene expression namespace: biological_process def: "Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form." [GOC:dph, GOC:tb] is_a: GO:0010468 ! regulation of gene expression is_a: GO:0010605 ! negative regulation of macromolecule metabolic process relationship: negatively_regulates GO:0010467 ! gene expression [Term] id: GO:0016070 name: RNA metabolic process namespace: biological_process def: "The cellular chemical reactions and pathways involving RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage." [ISBN:0198506732] subset: goslim_aspergillus subset: goslim_candida subset: goslim_metagenomics subset: goslim_pir subset: gosubset_prok synonym: "RNA metabolism" EXACT [] xref: Reactome:REACT_107259 "Metabolism of RNA, Sus scrofa" xref: Reactome:REACT_107652 "Metabolism of RNA, Schizosaccharomyces pombe" xref: Reactome:REACT_110289 "Metabolism of RNA, Danio rerio" xref: Reactome:REACT_21257 "Metabolism of RNA, Homo sapiens" xref: Reactome:REACT_30579 "Metabolism of RNA, Xenopus tropicalis" xref: Reactome:REACT_31367 "Metabolism of RNA, Dictyostelium discoideum" xref: Reactome:REACT_33720 "Metabolism of RNA, Plasmodium falciparum" xref: Reactome:REACT_80071 "Metabolism of RNA, Caenorhabditis elegans" xref: Reactome:REACT_83630 "Metabolism of RNA, Taeniopygia guttata" xref: Reactome:REACT_84169 "Metabolism of RNA, Canis familiaris" xref: Reactome:REACT_85788 "Metabolism of RNA, Oryza sativa" xref: Reactome:REACT_88316 "Metabolism of RNA, Mus musculus" xref: Reactome:REACT_89992 "Metabolism of RNA, Saccharomyces cerevisiae" xref: Reactome:REACT_91556 "Metabolism of RNA, Bos taurus" xref: Reactome:REACT_92152 "Metabolism of RNA, Drosophila melanogaster" xref: Reactome:REACT_94876 "Metabolism of RNA, Arabidopsis thaliana" xref: Reactome:REACT_99403 "Metabolism of RNA, Rattus norvegicus" xref: Reactome:REACT_99885 "Metabolism of RNA, Gallus gallus" is_a: GO:0044260 ! cellular macromolecule metabolic process is_a: GO:0090304 ! nucleic acid metabolic process [Term] id: GO:0016458 name: gene silencing namespace: biological_process def: "Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation." [GOC:dph, GOC:jid, GOC:tb] comment: Note that this process is the opposite of long-term maintenance of gene activation. subset: goslim_pir synonym: "long-term maintenance of gene inactivation" RELATED [] xref: Wikipedia:Gene_silencing is_a: GO:0010629 ! negative regulation of gene expression is_a: GO:0044763 ! single-organism cellular process [Term] id: GO:0018130 name: heterocycle biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings)." [ISBN:0198547684] subset: gosubset_prok synonym: "heterocycle anabolism" EXACT [] synonym: "heterocycle biosynthesis" EXACT [] synonym: "heterocycle formation" EXACT [] synonym: "heterocycle synthesis" EXACT [] is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0046483 ! heterocycle metabolic process [Term] id: GO:0019222 name: regulation of metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism." [GOC:go_curators] subset: gosubset_prok synonym: "regulation of metabolism" EXACT [] is_a: GO:0050789 ! regulation of biological process relationship: regulates GO:0008152 ! metabolic process [Term] id: GO:0019438 name: aromatic compound biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring." [GOC:ai] subset: gosubset_prok synonym: "aromatic compound anabolism" EXACT [] synonym: "aromatic compound biosynthesis" EXACT [] synonym: "aromatic compound formation" EXACT [] synonym: "aromatic compound synthesis" EXACT [] synonym: "aromatic hydrocarbon biosynthesis" NARROW [] synonym: "aromatic hydrocarbon biosynthetic process" NARROW [] is_a: GO:0006725 ! cellular aromatic compound metabolic process is_a: GO:0044249 ! cellular biosynthetic process [Term] id: GO:0019538 name: protein metabolic process namespace: biological_process alt_id: GO:0006411 def: "The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification." [GOC:ma] subset: goslim_metagenomics subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "protein metabolic process and modification" EXACT [] synonym: "protein metabolism" EXACT [] synonym: "protein metabolism and modification" EXACT [] xref: Wikipedia:Protein_metabolism is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:0044238 ! primary metabolic process [Term] id: GO:0019954 name: asexual reproduction namespace: biological_process def: "The biological process in which new individuals are produced by either a single cell or a group of cells, in the absence of any sexual process." [ISBN:0387520546] subset: gosubset_prok xref: Wikipedia:Asexual_reproduction is_a: GO:0000003 ! reproduction [Term] id: GO:0022402 name: cell cycle process namespace: biological_process def: "The cellular process that ensures successive accurate and complete genome replication and chromosome segregation." [GOC:isa_complete, GOC:mtg_cell_cycle] subset: gocheck_do_not_manually_annotate subset: gosubset_prok is_a: GO:0044763 ! single-organism cellular process [Term] id: GO:0030154 name: cell differentiation namespace: biological_process def: "The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state." [ISBN:0198506732] subset: goslim_generic subset: goslim_plant subset: gosubset_prok xref: Wikipedia:Cellular_differentiation is_a: GO:0048869 ! cellular developmental process [Term] id: GO:0030435 name: sporulation resulting in formation of a cellular spore namespace: biological_process def: "The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction." [GOC:mah, GOC:pamgo_curators, ISBN:0072992913] comment: Note that the synonym 'spore differentiation', like the term name and definition, refers to differentiation into a spore rather than any subsequent developmental changes that a spore may undergo. subset: gosubset_prok synonym: "cellular spore formation by sporulation" EXACT [GOC:dph, GOC:tb] synonym: "spore biosynthesis" EXACT [] synonym: "spore differentiation" EXACT [] synonym: "spore formation" EXACT [] xref: Wikipedia:Sporogenesis is_a: GO:0030154 ! cell differentiation is_a: GO:0043934 ! sporulation is_a: GO:0048646 ! anatomical structure formation involved in morphogenesis [Term] id: GO:0030436 name: asexual sporulation namespace: biological_process def: "The formation of spores derived from the products of mitosis. Examples of this process are found in Bacterial species." [GOC:mah, PMID:9529886] subset: goslim_aspergillus subset: gosubset_prok synonym: "asexual spore formation" EXACT [] synonym: "mitotic spore formation" EXACT [] synonym: "mitotic sporulation" EXACT [] is_a: GO:0019954 ! asexual reproduction is_a: GO:0043934 ! sporulation [Term] id: GO:0031975 name: envelope namespace: cellular_component def: "A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer; also includes the space between layers." [GOC:mah, GOC:pz] subset: gosubset_prok is_a: GO:0044464 ! cell part [Term] id: GO:0032196 name: transposition namespace: biological_process def: "Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites." [GOC:jp, ISBN:1555812090] subset: goslim_aspergillus subset: goslim_candida subset: goslim_generic subset: goslim_metagenomics subset: goslim_pir subset: goslim_yeast subset: gosubset_prok xref: Wikipedia:Transposon is_a: GO:0044763 ! single-organism cellular process [Term] id: GO:0032502 name: developmental process namespace: biological_process def: "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition." [GOC:isa_complete] subset: goslim_aspergillus subset: goslim_pir subset: gosubset_prok synonym: "development" NARROW [] is_a: GO:0008150 ! biological_process [Term] id: GO:0032774 name: RNA biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers." [GOC:mah] synonym: "RNA anabolism" EXACT [] synonym: "RNA biosynthesis" EXACT [] synonym: "RNA formation" EXACT [] synonym: "RNA synthesis" EXACT [] is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0016070 ! RNA metabolic process is_a: GO:0034654 ! nucleobase-containing compound biosynthetic process [Term] id: GO:0034301 name: endospore formation namespace: biological_process def: "The process in which a cell gives rise to an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell. Endospores are produced by some low G+C Gram-positive bacteria in response to harsh conditions." [GOC:ds, GOC:mah, ISBN:0470090278] is_a: GO:0043936 ! asexual sporulation resulting in formation of a cellular spore [Term] id: GO:0034303 name: myxospore formation namespace: biological_process def: "The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, dessication, and UV than vegetative myxobacteria." [GOC:ds, ISBN:0122268008] is_a: GO:0043936 ! asexual sporulation resulting in formation of a cellular spore [Term] id: GO:0034641 name: cellular nitrogen compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells." [GOC:mah] subset: goslim_generic subset: gosubset_prok synonym: "cellular nitrogen compound metabolism" EXACT [] xref: Reactome:REACT_102000 "Metabolism of amino acids and derivatives, Mycobacterium tuberculosis" xref: Reactome:REACT_103710 "Metabolism of amino acids and derivatives, Escherichia coli" xref: Reactome:REACT_107293 "Metabolism of amino acids and derivatives, Arabidopsis thaliana" xref: Reactome:REACT_108179 "Metabolism of amino acids and derivatives, Xenopus tropicalis" xref: Reactome:REACT_109042 "Metabolism of amino acids and derivatives, Sus scrofa" xref: Reactome:REACT_13 "Metabolism of amino acids and derivatives, Homo sapiens" xref: Reactome:REACT_28699 "Metabolism of amino acids and derivatives, Saccharomyces cerevisiae" xref: Reactome:REACT_29108 "Metabolism of amino acids and derivatives, Caenorhabditis elegans" xref: Reactome:REACT_32429 "Metabolism of amino acids and derivatives, Rattus norvegicus" xref: Reactome:REACT_33347 "Metabolism of amino acids and derivatives, Mus musculus" xref: Reactome:REACT_34326 "Metabolism of amino acids and derivatives, Staphylococcus aureus N315" xref: Reactome:REACT_55564 "Metabolism of amino acids and derivatives, Gallus gallus" xref: Reactome:REACT_77741 "Metabolism of amino acids and derivatives, Taeniopygia guttata" xref: Reactome:REACT_82379 "Metabolism of amino acids and derivatives, Bos taurus" xref: Reactome:REACT_86268 "Metabolism of amino acids and derivatives, Drosophila melanogaster" xref: Reactome:REACT_90299 "Metabolism of amino acids and derivatives, Oryza sativa" xref: Reactome:REACT_91959 "Metabolism of amino acids and derivatives, Plasmodium falciparum" xref: Reactome:REACT_93580 "Metabolism of amino acids and derivatives, Danio rerio" xref: Reactome:REACT_95666 "Metabolism of amino acids and derivatives, Canis familiaris" xref: Reactome:REACT_98086 "Metabolism of amino acids and derivatives, Dictyostelium discoideum" xref: Reactome:REACT_99241 "Metabolism of amino acids and derivatives, Schizosaccharomyces pombe" is_a: GO:0006807 ! nitrogen compound metabolic process is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0034645 name: cellular macromolecule biosynthetic process namespace: biological_process alt_id: GO:0034961 def: "The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells." [CHEBI:33694, GOC:mah] synonym: "cellular biopolymer biosynthetic process" EXACT [GOC:mtg_chebi_dec09] synonym: "cellular macromolecule anabolism" EXACT [GOC:mah] synonym: "cellular macromolecule biosynthesis" EXACT [GOC:mah] synonym: "cellular macromolecule formation" EXACT [GOC:mah] synonym: "cellular macromolecule synthesis" EXACT [GOC:mah] is_a: GO:0009059 ! macromolecule biosynthetic process is_a: GO:0044249 ! cellular biosynthetic process is_a: GO:0044260 ! cellular macromolecule metabolic process [Term] id: GO:0034654 name: nucleobase-containing compound biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of nucleobases, nucleosides, nucleotides and nucleic acids." [GOC:mah] subset: gosubset_prok synonym: "nucleobase, nucleoside, nucleotide and nucleic acid anabolism" EXACT [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid biosynthesis" EXACT [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid formation" EXACT [] synonym: "nucleobase, nucleoside, nucleotide and nucleic acid synthesis" NARROW [] is_a: GO:0006139 ! nucleobase-containing compound metabolic process is_a: GO:0018130 ! heterocycle biosynthetic process is_a: GO:0019438 ! aromatic compound biosynthetic process is_a: GO:0044271 ! cellular nitrogen compound biosynthetic process is_a: GO:1901362 ! organic cyclic compound biosynthetic process [Term] id: GO:0040007 name: growth namespace: biological_process alt_id: GO:0048590 def: "The increase in size or mass of an entire organism, a part of an organism or a cell." [GOC:bf, GOC:ma] comment: See also the biological process term 'cell growth ; GO:0016049'. subset: goslim_generic subset: goslim_pir subset: goslim_plant subset: gosubset_prok synonym: "growth pattern" RELATED [] synonym: "non-developmental growth" RELATED [GOC:mah] is_a: GO:0008150 ! biological_process [Term] id: GO:0040011 name: locomotion namespace: biological_process def: "Self-propelled movement of a cell or organism from one location to another." [GOC:dgh] subset: goslim_generic subset: goslim_pir subset: gosubset_prok is_a: GO:0008150 ! biological_process [Term] id: GO:0042221 name: response to chemical namespace: biological_process def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus." [GOC:jl] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. subset: gocheck_do_not_manually_annotate subset: goslim_aspergillus subset: goslim_candida subset: goslim_yeast subset: gosubset_prok synonym: "response to chemical stimulus" EXACT [GOC:dos] synonym: "response to chemical substance" EXACT [] is_a: GO:0050896 ! response to stimulus [Term] id: GO:0042330 name: taxis namespace: biological_process def: "The directed movement of a motile cell or organism in response to an external stimulus." [GOC:jl, ISBN:0192801023] subset: gosubset_prok synonym: "directed movement in response to stimulus" EXACT [] xref: Wikipedia:Taxis is_a: GO:0009605 ! response to external stimulus is_a: GO:0040011 ! locomotion [Term] id: GO:0042995 name: cell projection namespace: cellular_component def: "A prolongation or process extending from a cell, e.g. a flagellum or axon." [GOC:jl, http://www.cogsci.princeton.edu/~wn/] subset: goslim_pir subset: gosubset_prok synonym: "cell process" BROAD [] synonym: "cellular process" BROAD [] synonym: "cellular projection" EXACT [] is_a: GO:0044464 ! cell part [Term] id: GO:0043107 name: type IV pilus-dependent motility namespace: biological_process def: "Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility." [GOC:go_curators, PMID:12704238] subset: gosubset_prok synonym: "social gliding motility" NARROW [] synonym: "TFP-dependent motility" EXACT [] synonym: "TFP-dependent movement" EXACT [] synonym: "twitching motility" NARROW [] synonym: "type 4 pilus-dependent motility" EXACT [] synonym: "type four pilus-dependent motility" EXACT [] is_a: GO:0048870 ! cell motility [Term] id: GO:0043158 name: heterocyst differentiation namespace: biological_process def: "The process in which a relatively unspecialized cell acquires specialized features of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen." [GOC:jl] subset: gosubset_prok synonym: "heterocyst biosynthesis" EXACT [] synonym: "heterocyst cell differentiation" EXACT [] synonym: "heterocyst formation" EXACT [] is_a: GO:0030154 ! cell differentiation [Term] id: GO:0043170 name: macromolecule metabolic process namespace: biological_process alt_id: GO:0043283 def: "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah] subset: goslim_pir subset: gosubset_prok synonym: "biopolymer metabolic process" EXACT [GOC:mtg_chebi_dec09] synonym: "macromolecule metabolism" EXACT [] is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:0043934 name: sporulation namespace: biological_process def: "The process whose specific outcome is the progression of a spore over time, from its initiation to the mature structure. A spore is a structure that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction." [GOC:pamgo_curators] subset: goslim_metagenomics subset: goslim_yeast xref: Wikipedia:Spore is_a: GO:0044767 ! single-organism developmental process [Term] id: GO:0043936 name: asexual sporulation resulting in formation of a cellular spore namespace: biological_process def: "The formation of a cellular spore derived from the products of mitosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction." [GOC:pamgo_curators] is_a: GO:0030435 ! sporulation resulting in formation of a cellular spore is_a: GO:0030436 ! asexual sporulation [Term] id: GO:0044237 name: cellular metabolic process namespace: biological_process def: "The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators] subset: goslim_pir subset: gosubset_prok synonym: "cellular metabolism" EXACT [] synonym: "intermediary metabolism" RELATED [GOC:mah] is_a: GO:0008152 ! metabolic process is_a: GO:0009987 ! cellular process [Term] id: GO:0044238 name: primary metabolic process namespace: biological_process def: "The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators, http://www.metacyc.org] subset: goslim_pir subset: gosubset_prok synonym: "primary metabolism" EXACT [] is_a: GO:0008152 ! metabolic process [Term] id: GO:0044249 name: cellular biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl] subset: gosubset_prok synonym: "cellular anabolism" EXACT [] synonym: "cellular biosynthesis" EXACT [] synonym: "cellular formation" EXACT [] synonym: "cellular synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0044260 name: cellular macromolecule metabolic process namespace: biological_process alt_id: GO:0034960 def: "The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells." [CHEBI:33694, GOC:mah] subset: gosubset_prok synonym: "cellular biopolymer metabolic process" EXACT [GOC:mtg_chebi_dec09] synonym: "cellular macromolecule metabolism" EXACT [] is_a: GO:0043170 ! macromolecule metabolic process is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0044267 name: cellular protein metabolic process namespace: biological_process def: "The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." [GOC:jl] subset: gosubset_prok synonym: "cellular protein metabolism" EXACT [] xref: Reactome:REACT_101554 "Metabolism of proteins, Gallus gallus" xref: Reactome:REACT_102155 "Metabolism of proteins, Arabidopsis thaliana" xref: Reactome:REACT_105825 "Metabolism of proteins, Dictyostelium discoideum" xref: Reactome:REACT_106151 "Metabolism of proteins, Xenopus tropicalis" xref: Reactome:REACT_108005 "Metabolism of proteins, Bos taurus" xref: Reactome:REACT_109022 "Metabolism of proteins, Schizosaccharomyces pombe" xref: Reactome:REACT_17015 "Metabolism of proteins, Homo sapiens" xref: Reactome:REACT_32904 "Metabolism of proteins, Canis familiaris" xref: Reactome:REACT_34473 "Metabolism of proteins, Taeniopygia guttata" xref: Reactome:REACT_80561 "Metabolism of proteins, Escherichia coli" xref: Reactome:REACT_81994 "Metabolism of proteins, Sus scrofa" xref: Reactome:REACT_82523 "Metabolism of proteins, Danio rerio" xref: Reactome:REACT_85873 "Metabolism of proteins, Saccharomyces cerevisiae" xref: Reactome:REACT_86658 "Metabolism of proteins, Drosophila melanogaster" xref: Reactome:REACT_89852 "Metabolism of proteins, Rattus norvegicus" xref: Reactome:REACT_91052 "Metabolism of proteins, Caenorhabditis elegans" xref: Reactome:REACT_93132 "Metabolism of proteins, Mus musculus" xref: Reactome:REACT_96466 "Metabolism of proteins, Plasmodium falciparum" xref: Reactome:REACT_99179 "Metabolism of proteins, Oryza sativa" is_a: GO:0019538 ! protein metabolic process is_a: GO:0044260 ! cellular macromolecule metabolic process [Term] id: GO:0044271 name: cellular nitrogen compound biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds." [GOC:jl, ISBN:0198506732] subset: gosubset_prok synonym: "nitrogen compound anabolism" BROAD [] synonym: "nitrogen compound biosynthesis" BROAD [] synonym: "nitrogen compound formation" BROAD [] synonym: "nitrogen compound synthesis" BROAD [] is_a: GO:0034641 ! cellular nitrogen compound metabolic process is_a: GO:0044249 ! cellular biosynthetic process [Term] id: GO:0044464 name: cell part namespace: cellular_component def: "Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. subset: goantislim_grouping subset: gocheck_do_not_annotate subset: goslim_pir subset: gosubset_prok synonym: "cellular subcomponent" EXACT [NIF_Subcellular:sao628508602] synonym: "protoplast" RELATED [GOC:mah] is_a: GO:0005575 ! cellular_component relationship: part_of GO:0005623 ! cell [Term] id: GO:0044699 name: single-organism process namespace: biological_process def: "A biological process that involves only one organism." [GOC:jl] synonym: "single organism process" EXACT [] is_a: GO:0008150 ! biological_process [Term] id: GO:0044710 name: single-organism metabolic process namespace: biological_process def: "A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves a single organism." [GOC:jl] is_a: GO:0008152 ! metabolic process is_a: GO:0044699 ! single-organism process [Term] id: GO:0044711 name: single-organism biosynthetic process namespace: biological_process def: "A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism." [GOC:jl] is_a: GO:0009058 ! biosynthetic process is_a: GO:0044710 ! single-organism metabolic process [Term] id: GO:0044763 name: single-organism cellular process namespace: biological_process def: "Any process that is carried out at the cellular level, occurring within a single organism." [GOC:jl] is_a: GO:0009987 ! cellular process is_a: GO:0044699 ! single-organism process [Term] id: GO:0044767 name: single-organism developmental process namespace: biological_process def: "A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism." [GOC:jl] is_a: GO:0032502 ! developmental process is_a: GO:0044699 ! single-organism process [Term] id: GO:0044786 name: cell cycle DNA replication namespace: biological_process def: "The DNA-dependent DNA replication that takes place as part of the cell cycle." [GOC:mtg_cell_cycle] is_a: GO:0006260 ! DNA replication is_a: GO:0022402 ! cell cycle process is_a: GO:0044711 ! single-organism biosynthetic process [Term] id: GO:0046483 name: heterocycle metabolic process namespace: biological_process def: "The chemical reactions and pathways involving heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings)." [CHEBI:5686, ISBN:0198506732] subset: goslim_pir subset: gosubset_prok synonym: "heterocycle metabolism" EXACT [] is_a: GO:0044237 ! cellular metabolic process [Term] id: GO:0048519 name: negative regulation of biological process namespace: biological_process alt_id: GO:0043118 def: "Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:jid] subset: gosubset_prok synonym: "down regulation of biological process" EXACT [] synonym: "down-regulation of biological process" EXACT [] synonym: "downregulation of biological process" EXACT [] synonym: "inhibition of biological process" NARROW [] synonym: "negative regulation of physiological process" EXACT [] is_a: GO:0050789 ! regulation of biological process relationship: negatively_regulates GO:0008150 ! biological_process [Term] id: GO:0048646 name: anatomical structure formation involved in morphogenesis namespace: biological_process def: "The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome." [GOC:dph, GOC:jid, GOC:tb] comment: Note that, for example, the formation of a pseudopod in an amoeba would not be considered formation involved in morphogenesis because it would not be thought of as the formation of an anatomical structure that was part of the shaping of the amoeba during its development. The formation of an axon from a neuron would be considered the formation of an anatomical structure involved in morphogenesis because it contributes to the creation of the form of the neuron in a developmental sense. subset: goslim_generic synonym: "formation of an anatomical structure involved in morphogenesis" EXACT [GOC:dph, GOC:tb] is_a: GO:0032502 ! developmental process [Term] id: GO:0048869 name: cellular developmental process namespace: biological_process def: "A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition." [GOC:isa_complete] subset: gosubset_prok is_a: GO:0044763 ! single-organism cellular process is_a: GO:0044767 ! single-organism developmental process [Term] id: GO:0048870 name: cell motility namespace: biological_process def: "Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another." [GOC:dgh, GOC:dph, GOC:isa_complete, GOC:mlg] subset: goslim_generic subset: goslim_metagenomics subset: gosubset_prok synonym: "cell locomotion" EXACT [] synonym: "cell movement" RELATED [] synonym: "movement of a cell" EXACT [] is_a: GO:0006928 ! cellular component movement is_a: GO:0040011 ! locomotion [Term] id: GO:0050789 name: regulation of biological process namespace: biological_process alt_id: GO:0050791 def: "Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule." [GOC:ai, GOC:go_curators] subset: goslim_aspergillus subset: goslim_candida subset: gosubset_prok synonym: "regulation of physiological process" EXACT [] is_a: GO:0065007 ! biological regulation relationship: regulates GO:0008150 ! biological_process [Term] id: GO:0050896 name: response to stimulus namespace: biological_process alt_id: GO:0051869 def: "Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism." [GOC:ai, GOC:bf] comment: Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC. subset: gocheck_do_not_manually_annotate subset: goslim_pir subset: gosubset_prok synonym: "physiological response to stimulus" EXACT [] is_a: GO:0008150 ! biological_process [Term] id: GO:0051179 name: localization namespace: biological_process def: "Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported to or maintained in a specific location." [GOC:ai] subset: goslim_pir subset: gosubset_prok synonym: "establishment and maintenance of cellular component location" NARROW [] synonym: "establishment and maintenance of localization" EXACT [] synonym: "establishment and maintenance of position" EXACT [] synonym: "establishment and maintenance of substance location" NARROW [] synonym: "establishment and maintenance of substrate location" NARROW [] synonym: "localisation" EXACT [GOC:mah] is_a: GO:0008150 ! biological_process [Term] id: GO:0060255 name: regulation of macromolecule metabolic process namespace: biological_process def: "Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GOC:dph, GOC:tb] subset: gosubset_prok is_a: GO:0019222 ! regulation of metabolic process relationship: regulates GO:0043170 ! macromolecule metabolic process [Term] id: GO:0065007 name: biological regulation namespace: biological_process def: "Any process that modulates a measurable attribute of any biological process, quality or function." [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw] subset: goslim_pir subset: gosubset_prok synonym: "regulation" BROAD [] is_a: GO:0008150 ! biological_process [Term] id: GO:0071704 name: organic substance metabolic process namespace: biological_process def: "The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon." [CHEBI:50860, GOC:mah] synonym: "organic molecular entity metabolic process" EXACT [] synonym: "organic molecular entity metabolism" EXACT [] synonym: "organic substance metabolism" EXACT [] is_a: GO:0008152 ! metabolic process [Term] id: GO:0071973 name: bacterial-type flagellum-dependent cell motility namespace: biological_process def: "Cell motility due to the motion of one or more bacterial-type flagella. A bacterial-type flagellum is a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope." [GOC:cilia, GOC:krc, GOC:mah] subset: gosubset_prok synonym: "bacterial-type flagellar cell motility" RELATED [] synonym: "flagellin-based flagellar cell motility" EXACT [GOC:mah] is_a: GO:0097588 ! archaeal or bacterial-type flagellum-dependent cell motility [Term] id: GO:0071975 name: cell swimming namespace: biological_process def: "Cell motility that results in the smooth movement of a cell through a liquid medium." [PMID:18461074] subset: gosubset_prok synonym: "cell swimming motility" EXACT [GOC:mah] is_a: GO:0048870 ! cell motility [Term] id: GO:0071976 name: cell gliding namespace: biological_process def: "Cell motility that results in the smooth movement of a cell along a solid surface." [PMID:18461074] subset: gosubset_prok synonym: "cell gliding motility" EXACT [GOC:mah] is_a: GO:0048870 ! cell motility [Term] id: GO:0071978 name: bacterial-type flagellum-dependent swarming motility namespace: biological_process def: "Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria." [GOC:cilia, PMID:14527279, PMID:18461074] subset: gosubset_prok synonym: "bacterial-type flagellar swarming motility" RELATED [] synonym: "bacterial-type flagellum-mediated cell swarming" EXACT [GOC:mah] is_a: GO:0071973 ! bacterial-type flagellum-dependent cell motility [Term] id: GO:0090304 name: nucleic acid metabolic process namespace: biological_process def: "Any cellular metabolic process involving nucleic acids." [GOC:dph, GOC:tb] is_a: GO:0006139 ! nucleobase-containing compound metabolic process is_a: GO:0043170 ! macromolecule metabolic process [Term] id: GO:0097588 name: archaeal or bacterial-type flagellum-dependent cell motility namespace: biological_process def: "Cell motility due to movement of bacterial- or archaeal-type flagella." [GOC:cilia, GOC:krc] comment: Bacterial- and archaeal-type flagella are superficially similar but have a different molecular composition and fine structure. This term was added for mapping to the UniProt keyword "flagellar rotation". For manual annotation, please use one of the child terms of GO:0097588 that refer specifically to either archaeal- or bacterial-type flagella. is_a: GO:0001539 ! cilium or flagellum-dependent cell motility [Term] id: GO:1901360 name: organic cyclic compound metabolic process namespace: biological_process def: "The chemical reactions and pathways involving organic cyclic compound." [GOC:TermGenie] synonym: "organic cyclic compound metabolism" EXACT [GOC:TermGenie] is_a: GO:0071704 ! organic substance metabolic process [Term] id: GO:1901362 name: organic cyclic compound biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of organic cyclic compound." [GOC:TermGenie] synonym: "organic cyclic compound anabolism" EXACT [GOC:TermGenie] synonym: "organic cyclic compound biosynthesis" EXACT [GOC:TermGenie] synonym: "organic cyclic compound formation" EXACT [GOC:TermGenie] synonym: "organic cyclic compound synthesis" EXACT [GOC:TermGenie] is_a: GO:1901360 ! organic cyclic compound metabolic process is_a: GO:1901576 ! organic substance biosynthetic process [Term] id: GO:1901576 name: organic substance biosynthetic process namespace: biological_process def: "The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon." [GOC:pr, GOC:TermGenie] synonym: "organic molecular entity anabolism" EXACT [GOC:TermGenie] synonym: "organic molecular entity biosynthesis" EXACT [GOC:TermGenie] synonym: "organic molecular entity biosynthetic process" EXACT [] synonym: "organic molecular entity formation" EXACT [GOC:TermGenie] synonym: "organic molecular entity synthesis" EXACT [GOC:TermGenie] synonym: "organic substance anabolism" EXACT [] synonym: "organic substance biosynthesis" EXACT [] synonym: "organic substance formation" EXACT [] synonym: "organic substance synthesis" EXACT [] is_a: GO:0009058 ! biosynthetic process is_a: GO:0071704 ! organic substance metabolic process [Term] id: OMP:0000000 name: microbial phenotype def: "The observable manifestation of the genotype of a microbial cell or group of cells in an environment." [OMP:MCC] creation_date: 2011-03-10T04:01:50Z [Term] id: OMP:0000001 name: motility phenotype def: "A locomotion phenotype where the trait in question is the self-propelled movement of a microbe from one location to another." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0048870 "cell motility" is_a: OMP:0000312 ! locomotion phenotype is_a: OMP:0007197 ! cellular component phenotype intersection_of: OMP:0000312 ! locomotion phenotype intersection_of: inheres_in GO:0005623 ! cell relationship: inheres_in GO:0005623 ! cell creation_date: 2011-03-10T06:55:06Z [Term] id: OMP:0000002 name: decreased motility def: "An altered motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is decreased relative to a designated control." [OMP:MCC] xref: PATO:0002297 is_a: OMP:0007001 ! altered motility intersection_of: OMP:0007001 ! altered motility intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality creation_date: 2011-03-10T07:02:42Z [Term] id: OMP:0000003 name: cell arrangement phenotype def: "A microbial phenotype where the trait in question is the arrangement of cells of a microbe in relation to one another." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000000 ! microbial phenotype created_by: mchibucos creation_date: 2011-04-14T02:30:07Z [Term] id: OMP:0000004 name: taxis phenotype def: "A locomotion phenotype where the directed movement of a motile microbe is in response to an external stimulus." [ISBN:0192800329, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000312 ! locomotion phenotype intersection_of: OMP:0000312 ! locomotion phenotype intersection_of: inheres_in GO:0042330 ! taxis relationship: inheres_in GO:0042330 ! taxis created_by: mchibucos creation_date: 2011-04-14T03:29:20Z [Term] id: OMP:0000005 name: presence of motility def: "A motility phenotype where a microbe possesses the ability to perform controlled self-propelled movement that results in translocation from one place to another." [OMP:MCC] synonym: "motile" RELATED [] is_a: OMP:0000001 ! motility phenotype intersection_of: OMP:0000001 ! motility phenotype intersection_of: has_quality PATO:0000467 ! present relationship: has_quality PATO:0000467 ! present created_by: mchibucos creation_date: 2011-04-14T03:35:35Z [Term] id: OMP:0000006 name: presence of akinete formation def: "An akinete formation phenotype where a cell or cells have the ability to differentiate into an akinete." [OMP:MCC] is_a: OMP:0000093 ! akinete formation phenotype is_a: OMP:0007143 ! presence of asexual sporulation intersection_of: OMP:0000093 ! akinete formation phenotype intersection_of: has_quality PATO:0000467 ! present relationship: has_quality PATO:0000467 ! present created_by: mchibucos creation_date: 2011-04-26T02:51:36Z [Term] id: OMP:0000007 name: absence of akinete formation def: "An akinete formation phenotype where a cell or cells do not possess the ability to form an akinete." [OMP:MCC] is_a: OMP:0000093 ! akinete formation phenotype is_a: OMP:0007236 ! absence of asexual sporulation intersection_of: OMP:0000093 ! akinete formation phenotype intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: mchibucos creation_date: 2011-04-26T02:52:52Z [Term] id: OMP:0000008 name: presence of budding def: "A budding phenotype where an organism reproduces by the process of budding." [OMP:MCC] is_a: OMP:0000089 ! budding phenotype created_by: mchibucos creation_date: 2011-04-26T02:58:46Z [Term] id: OMP:0000010 name: presence of heterocysts def: "A heterocyst formation phenotype where a cell possesses the ability to differentiate into a heterocyst." [OMP:MCC] is_a: OMP:0000092 ! heterocyst formation phenotype created_by: mchibucos creation_date: 2011-04-26T02:59:42Z [Term] id: OMP:0000011 name: absence of heterocysts def: "A heterocyst formation phenotype where an organism does not possess the ability to differentiate into a heterocyst." [OMP:MCC] is_a: OMP:0000092 ! heterocyst formation phenotype created_by: mchibucos creation_date: 2011-04-26T02:59:42Z [Term] id: OMP:0000012 name: abolished spore germination efficiency def: "A decreased spore germination phenotype where no spores germinate." [OMP:MCC] is_a: OMP:0007223 ! decreased spore germination efficiency created_by: mchibucos creation_date: 2011-04-26T03:01:38Z [Term] id: OMP:0000013 name: decreased endospore formation def: "An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006161 ! altered endospore formation intersection_of: OMP:0006161 ! altered endospore formation intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: mchibucos creation_date: 2011-06-07T10:14:15Z [Term] id: OMP:0000014 name: increased endospore formation def: "An altered endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006161 ! altered endospore formation intersection_of: OMP:0006161 ! altered endospore formation intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: mchibucos creation_date: 2011-06-07T10:14:39Z [Term] id: OMP:0000015 name: decreased heterocyst formation def: "A heterocyst formation phenotype where heterocyst formation is decreased relative to a designated control." [OMP:MCC] is_a: OMP:0006007 ! altered heterocyst formation created_by: mchibucos creation_date: 2011-04-26T03:05:35Z [Term] id: OMP:0000016 name: delayed spore germination def: "A spore germination phenotype where a spore undergoes germination after a longer than usual dormancy period." [OMP:MCC] is_a: OMP:0007353 ! altered spore germination created_by: mchibucos creation_date: 2011-04-26T03:07:11Z [Term] id: OMP:0000017 name: presence of endospore formation def: "An endospore formation phenotype where the cell possesses the ability to form an endospore." [OMP:MCC] is_a: OMP:0000094 ! endospore formation phenotype is_a: OMP:0007143 ! presence of asexual sporulation intersection_of: OMP:0000094 ! endospore formation phenotype intersection_of: has_quality PATO:0000467 ! present relationship: has_quality PATO:0000467 ! present created_by: mchibucos creation_date: 2011-04-26T03:09:10Z [Term] id: OMP:0000018 name: absence of endospore formation def: "An endospore formation phenotype where the cell does not possess the ability to form an endospore." [OMP:MCC] is_a: OMP:0000094 ! endospore formation phenotype is_a: OMP:0007236 ! absence of asexual sporulation intersection_of: OMP:0000094 ! endospore formation phenotype intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: mchibucos creation_date: 2011-04-26T03:09:25Z [Term] id: OMP:0000020 name: presence of myxospore formation def: "A myxospore formation phenotype where an organism possesses the ability to form myxospores." [OMP:MCC] is_a: OMP:0000096 ! myxospore formation phenotype is_a: OMP:0007143 ! presence of asexual sporulation intersection_of: OMP:0000096 ! myxospore formation phenotype intersection_of: has_quality PATO:0000467 ! present relationship: has_quality PATO:0000467 ! present created_by: mchibucos creation_date: 2011-04-26T03:10:51Z [Term] id: OMP:0000021 name: absence of myxospore formation def: "A myxospore formation phenotype where an organism does not possess the ability to form myxospores." [OMP:MCC] is_a: OMP:0000096 ! myxospore formation phenotype is_a: OMP:0007236 ! absence of asexual sporulation intersection_of: OMP:0000096 ! myxospore formation phenotype intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: mchibucos creation_date: 2011-04-26T03:10:51Z [Term] id: OMP:0000022 name: decreased myxospore formation def: "An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is decreased relative to a designated control." [OMP:MCC] is_a: OMP:0006009 ! altered myxospore formation intersection_of: OMP:0006009 ! altered myxospore formation intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: mchibucos creation_date: 2011-04-26T03:10:51Z [Term] id: OMP:0000023 name: periplasmic flagellum/flagella def: "A flagellum distribution phenotype where the flagellum filament of an organism is located in the periplasm and does not extend past the cell envelope." [ISBN:9780073402406, OMP:DAS] synonym: "axial fibril" RELATED [] synonym: "axial filament" NARROW [] synonym: "endoflagella" RELATED [] is_a: OMP:0000078 ! flagellum arrangement phenotype created_by: mchibucos creation_date: 2011-06-07T11:12:48Z [Term] id: OMP:0000024 name: altered flagellum length def: "An altered flagellum phenotype where the length of the flagellum is altered relative to a designated control." [OMP:MCC] is_a: OMP:0007105 ! altered flagellum created_by: mchibucos creation_date: 2011-06-07T11:19:56Z [Term] id: OMP:0000026 name: host-virus interaction phenotype def: "A microbial phenotype related to the ability of a host to be infected by and/or support reproduction of a virus." [OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "host-bacteriophage interaction phenotype" NARROW [] synonym: "host-phage interaction phenotype" NARROW [] is_a: OMP:0000000 ! microbial phenotype created_by: mchibucos creation_date: 2011-06-06T02:39:55Z [Term] id: OMP:0000027 name: flagellum morphology phenotype def: "A cell projection morphology phenotype relating to the size, shape, or appearance of flagella, which are threadlike structures borne either singly or in groups by a motile cell, which propel the cell." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "axial filament phenotype" NARROW [] is_a: OMP:0000083 ! cell projection morphology phenotype created_by: mchibucos creation_date: 2011-04-26T03:26:26Z [Term] id: OMP:0000028 name: decreased number of pili def: "A presence of pilus phenotype where a cell has fewer pili relative to a designated control." [OMP:MCC] synonym: "decreased fimbriae formation" EXACT [] is_a: OMP:0006010 ! altered pilus phenotype created_by: mchibucos creation_date: 2011-04-26T03:29:28Z [Term] id: OMP:0000029 name: presence of flagellum def: "A flagellum phenotype where the organism possesses a flagellum or flagella in at least some environments." [OMP:MCC] is_a: OMP:0000027 ! flagellum morphology phenotype created_by: mchibucos creation_date: 2011-04-26T03:29:34Z [Term] id: OMP:0000030 name: absence of flagellum def: "A flagellum phenotype where the organism does not possess a flagellum or flagella." [OMP:MCC] synonym: "non-flagellated phenotype" RELATED [] is_a: OMP:0000027 ! flagellum morphology phenotype created_by: mchibucos creation_date: 2011-04-26T03:29:50Z [Term] id: OMP:0000031 name: altered flagellum shape def: "An altered flagellum phenotype where the shape of the flagellum is altered relative to a designated control." [OMP:MCC] is_a: OMP:0007105 ! altered flagellum created_by: mchibucos creation_date: 2011-04-26T03:41:37Z [Term] id: OMP:0000033 name: absence of pilus def: "A pilus phenotype where an organism does not possess a pilus." [OMP:MCC] synonym: "fimbria absent" EXACT [] is_a: OMP:0000084 ! pilus morphology phenotype created_by: mchibucos creation_date: 2011-04-26T03:44:01Z [Term] id: OMP:0000034 name: presence of pilus def: "A pilus phenotype where an organism does possess a pilus in one or more growth conditions." [OMP:MCC] comment: Fimbria (plural, fimbriae) is a common synonym for pilus (plural, pili). synonym: "fimbria present" EXACT [] is_a: OMP:0000084 ! pilus morphology phenotype created_by: mchibucos creation_date: 2011-04-26T03:44:22Z [Term] id: OMP:0000035 name: malformed pilus def: "A pilus phenotype where the cell possesses a pilus that was distorted during formation." [OMP:MCC] synonym: "malformed fimbrium" EXACT [] is_a: OMP:0006010 ! altered pilus phenotype created_by: mchibucos creation_date: 2011-04-26T03:44:34Z [Term] id: OMP:0000036 name: increased amount of capsule def: "An altered capsule phenotype where the amount of capsule is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007133 ! altered capsule phenotype created_by: mchibucos creation_date: 2011-06-07T10:53:11Z [Term] id: OMP:0000037 name: increased flagellum length def: "An altered flagellum length phenotype where the length of the flagellum is longer than a designated control." [OMP:MCC] is_a: OMP:0000024 ! altered flagellum length created_by: mchibucos creation_date: 2011-06-07T11:25:05Z [Term] id: OMP:0000039 name: oxygen growth range phenotype def: "A growth range phenotype dealing with oxygen requirements and the range of oxygen concentrations that allow for growth." [OMP:WAM] is_a: OMP:0007192 ! growth range phenotype created_by: mchibucos creation_date: 2011-06-06T03:36:04Z [Term] id: OMP:0000040 name: decreased cell size def: "An altered cell size phenotype where the size of a cell or cells is decreased relative to a designated control." [OMP:MCC] is_a: OMP:0007083 ! altered cell size created_by: mchibucos creation_date: 2011-04-26T03:47:26Z [Term] id: OMP:0000041 name: increased cell size def: "An altered cell size phenotype where the volume of a cell or cells is increased relative to a designated control." [OMP:MCC] is_a: OMP:0007083 ! altered cell size created_by: mchibucos creation_date: 2011-04-26T03:49:09Z [Term] id: OMP:0000042 name: anucleoid def: "A nucleoid phenotype where the nucleoid is absent in some fraction of cells in a population." [OMP:DAS] is_a: OMP:0000150 ! nucleoid phenotype created_by: mchibucos creation_date: 2011-04-26T03:51:47Z [Term] id: OMP:0000043 name: nucleoid number def: "A nucleoid phenotype dealing with the number of nucleoid regions in the cell." [OMP:WAM] is_a: OMP:0000150 ! nucleoid phenotype created_by: mchibucos creation_date: 2011-04-26T03:53:34Z [Term] id: OMP:0000045 name: increased motility def: "An altered motility phenotype where the frequency, rate, timing, or extent of motility of a microbe is increased relative to a designated control." [OMP:MCC] xref: PATO:0002298 is_a: OMP:0007001 ! altered motility intersection_of: OMP:0007001 ! altered motility intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: mchibucos creation_date: 2011-04-26T04:08:26Z [Term] id: OMP:0000046 name: presence of chemotaxis def: "A chemotaxis phenotype where a motile microbe displays directed movement in response to a specific chemical concentration gradient." [OMP:MCC] is_a: OMP:0000048 ! chemotaxis phenotype created_by: mchibucos creation_date: 2011-04-26T04:17:42Z [Term] id: OMP:0000047 name: aerotaxis phenotype def: "A taxis phenotype where directed movement of a motile microbe is in response to environmental oxygen (O2)." [ISBN:0192800329, OMP:MCC] xref: GO:0009454 "aerotaxis" is_a: OMP:0000004 ! taxis phenotype intersection_of: OMP:0000004 ! taxis phenotype intersection_of: inheres_in GO:0009454 ! aerotaxis relationship: inheres_in GO:0009454 ! aerotaxis created_by: mchibucos creation_date: 2011-04-26T04:18:11Z [Term] id: OMP:0000048 name: chemotaxis phenotype def: "A taxis phenotype where the directed movement of a motile microbe is in response to a specific chemical concentration gradient." [ISBN:0198506732, OMP:MCC] comment: ChEBI cross product candidate (and child terms). xref: GO:0006935 is_a: OMP:0000004 ! taxis phenotype created_by: mchibucos creation_date: 2011-04-26T04:27:11Z [Term] id: OMP:0000049 name: presence of aerotaxis def: "An aerotaxis phenotype where a motile microbe displays directed movement in response to environmental oxygen (O2)." [OMP:MCC] is_a: OMP:0000047 ! aerotaxis phenotype intersection_of: OMP:0000047 ! aerotaxis phenotype intersection_of: has_quality PATO:0000467 ! present relationship: has_quality PATO:0000467 ! present created_by: mchibucos creation_date: 2011-04-26T04:27:42Z [Term] id: OMP:0000050 name: decreased amount of capsule def: "An altered capsule phenotype where the amount of capsule produced is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007133 ! altered capsule phenotype created_by: mchibucos creation_date: 2011-06-07T10:53:59Z [Term] id: OMP:0000052 name: presence of positive chemotaxis def: "A presence of chemotaxis phenotype where a motile microbe displays directed movement towards a higher concentration of a chemical." [OMP:MCC] is_a: OMP:0000046 ! presence of chemotaxis created_by: mchibucos creation_date: 2011-04-26T04:42:14Z [Term] id: OMP:0000053 name: presence of negative chemotaxis def: "A presence of chemotaxis phenotype where a motile microbe displays directed movement toward a lower concentration of a chemical (away from a higher concentration of a chemical)." [OMP:MCC] synonym: "repellent" RELATED [] is_a: OMP:0000046 ! presence of chemotaxis created_by: mchibucos creation_date: 2011-04-26T04:42:14Z [Term] id: OMP:0000054 name: absence of positive chemotaxis def: "An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a higher concentration of a specific chemical." [OMP:MCC] is_a: OMP:0000097 ! absence of chemotaxis created_by: mchibucos creation_date: 2011-04-26T04:42:14Z [Term] id: OMP:0000055 name: absence of negative chemotaxis def: "An absence of chemotaxis phenotype where an organism doesn't display directed movement toward a lower concentration of a specific chemical." [OMP:MCC] is_a: OMP:0000097 ! absence of chemotaxis created_by: mchibucos creation_date: 2011-04-26T04:42:14Z [Term] id: OMP:0000056 name: presence of positive aerotaxis def: "A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a higher concentration of environmental oxygen." [OMP:MCC] xref: GO:0052131 is_a: OMP:0000049 ! presence of aerotaxis created_by: mchibucos creation_date: 2011-04-26T04:44:17Z [Term] id: OMP:0000057 name: presence of negative aerotaxis def: "A presence of aerotaxis phenotype where a motile cell or organism displays directed movement towards a lower concentration of environmental oxygen." [OMP:MCC] xref: GO:0052130 is_a: OMP:0000049 ! presence of aerotaxis created_by: mchibucos creation_date: 2011-04-26T04:44:17Z [Term] id: OMP:0000058 name: absence of positive aerotaxis def: "An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement towards a higher concentration of environmental oxygen (O2)." [OMP:MCC] is_a: OMP:0000159 ! absence of aerotaxis created_by: mchibucos creation_date: 2011-04-26T04:44:17Z [Term] id: OMP:0000059 name: absence of negative aerotaxis def: "An absence of aerotaxis phenotype where a motile microbe doesn't display directed movement away from a higher concentration of environmental oxygen (O2)." [OMP:MCC] is_a: OMP:0000159 ! absence of aerotaxis created_by: mchibucos creation_date: 2011-04-26T04:44:17Z [Term] id: OMP:0000060 name: presence of quorum sensing def: "A quorum sensing phenotype where an organism possesses the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules." [OMP:MCC] is_a: OMP:0000069 ! quorum sensing phenotype created_by: mchibucos creation_date: 2011-04-26T05:02:51Z [Term] id: OMP:0000061 name: decreased virulence def: "An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is decreased relative to a designated control." [OMP:MCC] synonym: "less virulent" EXACT [] xref: PATO:0002147 is_a: OMP:0000098 ! altered virulence created_by: mchibucos creation_date: 2011-04-26T05:02:57Z [Term] id: OMP:0000062 name: increased virulence def: "An altered virulence phenotype where the rate, frequency, timing, or extent of the ability of a microbe to cause disease in another organism (the host) is increased relative to a designated control." [OMP:MCC] synonym: "more virulent" RELATED [] xref: PATO:0002148 is_a: OMP:0000098 ! altered virulence created_by: mchibucos creation_date: 2011-04-26T05:03:12Z [Term] id: OMP:0000063 name: absence of quorum sensing def: "A quorum sensing phenotype where an organism does not possess the ability to monitor its population density by detecting the concentration of small, diffusible signal molecules." [OMP:MCC] is_a: OMP:0000069 ! quorum sensing phenotype created_by: mchibucos creation_date: 2011-04-26T05:06:00Z [Term] id: OMP:0000065 name: absence of virulence def: "A virulence phenotype where an organism does not possess the ability to cause disease in another organism (host)." [OMP:MCC] synonym: "avirulence" EXACT [] synonym: "incompatible interaction" EXACT [] is_a: OMP:0000068 ! virulence phenotype created_by: mchibucos creation_date: 2011-04-26T05:06:35Z [Term] id: OMP:0000066 name: abolished virulence def: "A decreased virulence phenotype where rate, frequency, timing, or extent of the ability of a microbe to cause disease in a host is abolished." [OMP:MCC] is_a: OMP:0000061 ! decreased virulence is_a: OMP:0000065 ! absence of virulence created_by: mchibucos creation_date: 2011-04-26T05:09:24Z [Term] id: OMP:0000067 name: presence of motility by swarming def: "A presence of motility phenotype where a population of microbes exhibit coordinated translocation across solid or semi-solid surfaces." [OMP:MCC] is_a: OMP:0000005 ! presence of motility intersection_of: OMP:0000005 ! presence of motility intersection_of: inheres_in GO:0071978 ! bacterial-type flagellum-dependent swarming motility relationship: inheres_in GO:0071978 ! bacterial-type flagellum-dependent swarming motility created_by: adrienne creation_date: 2011-02-02T03:28:43Z [Term] id: OMP:0000068 name: virulence phenotype def: "A microbe-host interaction phenotype related to the ability of a microbe to cause disease in another organism (the host)." [OMP:MCC] synonym: "infectious agent" BROAD [] synonym: "pathogen" BROAD [] xref: APO:0000048 "virulence" xref: GO:0009405 "pathogenesis" is_a: OMP:0000197 ! microbe-host interaction phenotype created_by: adrienne creation_date: 2011-02-02T03:28:59Z [Term] id: OMP:0000069 name: quorum sensing phenotype def: "A microbial communication phenotype where cells sense their population density by detecting the concentration of small, diffusible signal molecules produced by the cells themselves." [GO:0009372, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0009372 "quorum sensing" is_a: OMP:0000101 ! microbial communication phenotype created_by: adrienne creation_date: 2011-02-07T03:47:50Z [Term] id: OMP:0000070 name: cell development phenotype def: "A microbial phenotype where the trait in question is the progression of a cell from an initial condition to a later condition." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0048869 "cellular developmental process" is_a: OMP:0007332 ! cellular process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0048869 ! cellular developmental process relationship: inheres_in GO:0048869 ! cellular developmental process created_by: adrienne creation_date: 2011-02-02T03:11:48Z [Term] id: OMP:0000071 name: cell morphology phenotype def: "A microbial phenotype related to the form and structure of a microbe." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000050 "cellular morphology" is_a: OMP:0007197 ! cellular component phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: has_quality PATO:0000051 ! morphology intersection_of: inheres_in GO:0005623 ! cell relationship: has_quality PATO:0000051 ! morphology relationship: inheres_in GO:0005623 ! cell created_by: adrienne creation_date: 2011-02-02T03:15:16Z [Term] id: OMP:0000072 name: filamentous def: "A cell arrangement phenotype where cells are joined end-to-end in linear chains." [OMP:MCC] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-02T03:31:35Z [Term] id: OMP:0000073 name: cell shape phenotype def: "A cell morphology phenotype where the trait in question is the shape of a cell." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000051 "cell shape" is_a: OMP:0000071 ! cell morphology phenotype intersection_of: OMP:0000071 ! cell morphology phenotype intersection_of: has_quality PATO:0000052 ! shape relationship: has_quality PATO:0000052 ! shape created_by: adrienne creation_date: 2011-02-02T03:18:02Z [Term] id: OMP:0000074 name: cell size phenotype def: "A cell morphology phenotype where the trait in question is the size of a cell." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000052 "cell size" is_a: OMP:0000071 ! cell morphology phenotype intersection_of: OMP:0000071 ! cell morphology phenotype intersection_of: has_quality PATO:0000117 ! size relationship: has_quality PATO:0000117 ! size created_by: adrienne creation_date: 2011-02-02T03:18:19Z [Term] id: OMP:0000075 name: coccus def: "A spheroid cell phenotype where a cell is spherical or nearly spherical." [ISBN:9780073402406, OMP:MCC] synonym: "spherical-shaped" EXACT [] is_a: OMP:0007100 ! spheroid cell shape created_by: adrienne creation_date: 2011-02-02T03:18:29Z [Term] id: OMP:0000076 name: rod-shaped cells def: "A cylindrical cell phenotype where an organism has rod-shaped cells." [ISBN:9780073402406, OMP:MCC] synonym: "bacillus" EXACT [] is_a: OMP:0007099 ! cylindrical cell shape created_by: adrienne creation_date: 2011-02-02T03:18:47Z [Term] id: OMP:0000077 name: vibrio def: "A spiral cell shape phenotype where a rod-shaped cell is curved to form a comma-like shape or incomplete spiral." [ISBN:9780073402406, OMP:AEZ] is_a: OMP:0000086 ! spiral cell shape created_by: adrienne creation_date: 2011-02-02T03:19:31Z [Term] id: OMP:0000078 name: flagellum arrangement phenotype def: "A flagellum phenotype where the trait in question is the location of the flagellum on an organism." [OMP:MCC] is_a: OMP:0000027 ! flagellum morphology phenotype created_by: adrienne creation_date: 2011-02-02T03:43:16Z [Term] id: OMP:0000079 name: monotrichous def: "A flagellum distribution phenotype where an organism has a single flagellum." [ISBN:9780073402406] synonym: "single flagellum" EXACT [] is_a: OMP:0000078 ! flagellum arrangement phenotype created_by: adrienne creation_date: 2011-02-02T03:44:18Z [Term] id: OMP:0000080 name: amphitrichous def: "A flagellum distribution phenotype where an organism has a single flagellum at each end of the cell." [ISBN:9780073402406, OMP:MCC] is_a: OMP:0000078 ! flagellum arrangement phenotype created_by: adrienne creation_date: 2011-02-02T03:45:34Z [Term] id: OMP:0000081 name: lophotrichous def: "A flagellum distribution phenotype where an organism has multiple flagella located at one or both ends of a cell." [ISBN:9780073402406] is_a: OMP:0000078 ! flagellum arrangement phenotype created_by: adrienne creation_date: 2011-02-02T03:46:16Z [Term] id: OMP:0000082 name: peritrichous flagella def: "A flagellum distribution phenotype where an organism has multiple flagella dispersed across the cell surface." [ISBN:9780073402406, OMP:MCC] is_a: OMP:0000078 ! flagellum arrangement phenotype created_by: adrienne creation_date: 2011-02-02T03:46:44Z [Term] id: OMP:0000083 name: cell projection morphology phenotype def: "A cell morphology phenotype relating to the size, shape, or appearance of a structure that is a prolongation or process extending from a cell." [GO:0042995, OMP:MCC] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. synonym: "cell appendage phenotype" EXACT [] xref: GO:0042995 "cell projection" is_a: OMP:0000071 ! cell morphology phenotype intersection_of: OMP:0000071 ! cell morphology phenotype intersection_of: inheres_in GO:0042995 ! cell projection relationship: inheres_in GO:0042995 ! cell projection created_by: adrienne creation_date: 2011-02-02T03:47:44Z [Term] id: OMP:0000084 name: pilus morphology phenotype def: "A cell projection phenotype where the structure in question is a proteinaceous hair-like appendage on the surface of a microbial cell." [ISBN:9780073402406, OMP:MCC] synonym: "fimbria phenotype" EXACT [GO:0009289] is_a: OMP:0000083 ! cell projection morphology phenotype created_by: adrienne creation_date: 2011-02-02T03:47:57Z [Term] id: OMP:0000085 name: cell envelope morphology phenotype def: "A cell morphology phenotype relating to the size, shape, or appearance of the envelope that surrounds a microbial cell. The envelope includes the cytoplasmic membrane and everything external to the cytoplasmic membrane, encompassing the periplasmic space, cell wall, and outer membrane. Additional layers, such as capsules or S-layers, are also part of the envelope." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000071 ! cell morphology phenotype intersection_of: OMP:0000071 ! cell morphology phenotype intersection_of: inheres_in GO:0031975 ! envelope relationship: inheres_in GO:0031975 ! envelope created_by: adrienne creation_date: 2011-02-02T03:49:03Z [Term] id: OMP:0000086 name: spiral cell shape def: "A cell shape phenotype where a cell is helical or cork-screw shaped." [OMP:MCC] synonym: "curved rod" RELATED [] synonym: "spirillum" NARROW [] synonym: "spirochete" NARROW [] synonym: "vibrio" NARROW [] is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-02T03:19:47Z [Term] id: OMP:0000087 name: facultative anaerobe def: "An oxygen growth range phenotype where growth does not require oxygen but is better in its presence." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0000039 ! oxygen growth range phenotype created_by: mchibucos creation_date: 2011-06-06T03:42:26Z [Term] id: OMP:0000088 name: filamentous colony def: "A colony form phenotype characterized by growth of thin individual projections in the colony." [OMP:WAM] xref: SNOMEDCT:31153000 is_a: OMP:0000103 ! colony form phenotype created_by: mchibucos creation_date: 2011-06-07T12:08:48Z [Term] id: OMP:0000089 name: budding phenotype def: "An asexual reproduction phenotype related to the process of budding, where a new individual forms from an outgrowth (bud) on the body of the parental organism." [OMP:DAS] xref: GO:0007114 "cell budding" is_a: OMP:0007066 ! asexual reproduction phenotype created_by: adrienne creation_date: 2011-02-02T03:23:41Z [Term] id: OMP:0000090 name: lifespan phenotype def: "An organismal growth phenotype dealing with the lifespan of a microorganism, cell, or cells." [OMP:WAM] is_a: OMP:0000174 ! growth phenotype created_by: adrienne creation_date: 2011-02-02T03:24:11Z [Term] id: OMP:0000091 name: sporulation phenotype def: "A cell development phenotype related to formation of a spore, a dormant differentiated cell that can be used for dissemination, survival in adverse conditions, or reproduction." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0043934 "sporulation" is_a: OMP:0000070 ! cell development phenotype intersection_of: OMP:0000070 ! cell development phenotype intersection_of: inheres_in GO:0043934 ! sporulation relationship: inheres_in GO:0043934 ! sporulation created_by: adrienne creation_date: 2011-02-02T03:24:24Z [Term] id: OMP:0000092 name: heterocyst formation phenotype def: "A cell development phenotype related to development of a heterocyst, a differentiated cell in certain cyanobacteria whose purpose is to fix nitrogen." [DOI:10.1046/j.1469-8137.1999.00505.x, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0043158 "heterocyst differentiation" is_a: OMP:0000070 ! cell development phenotype intersection_of: OMP:0000070 ! cell development phenotype intersection_of: inheres_in GO:0043158 ! heterocyst differentiation relationship: inheres_in GO:0043158 ! heterocyst differentiation created_by: adrienne creation_date: 2011-02-02T03:24:43Z [Term] id: OMP:0000093 name: akinete formation phenotype def: "A cell development phenotype related to the development of an akinete, a thick-walled dormant cell derived from the enlargement of a vegetative cell." [doi:10.1046/j.1469-8137.1999.00505.x, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nAkinetes typically are more resistant to dessication and other environmental stresses than vegetative cells. xref: GO:0034302 "akinete formation" is_a: OMP:0007142 ! asexual sporulation phenotype created_by: adrienne creation_date: 2011-02-02T03:25:02Z [Term] id: OMP:0000094 name: endospore formation phenotype def: "A sporulation phenotype where development concerns formation of an endospore, a dormant, highly resistant spore with a thick wall that forms within the mother cell." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FAO:0000019 "spore" xref: GO:0034301 "endospore formation" is_a: OMP:0007142 ! asexual sporulation phenotype intersection_of: OMP:0000091 ! sporulation phenotype intersection_of: inheres_in GO:0034301 ! endospore formation relationship: inheres_in GO:0034301 ! endospore formation created_by: adrienne creation_date: 2011-02-02T03:25:29Z [Term] id: OMP:0000095 name: spore germination phenotype def: "A cell development phenotype regarding the physiological and developmental changes that occur in a spore following release from dormancy up to the earliest signs of growth (e.g. emergence from a spore wall)." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0009847 "spore germination" is_a: OMP:0000070 ! cell development phenotype intersection_of: OMP:0000070 ! cell development phenotype intersection_of: inheres_in GO:0009847 ! spore germination relationship: inheres_in GO:0009847 ! spore germination created_by: adrienne creation_date: 2011-02-02T03:25:47Z [Term] id: OMP:0000096 name: myxospore formation phenotype def: "A sporulation phenotype related to development of a myxospore, a differentiated, resting cell usually within a fruiting body by Myxobacteria." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0034303 "myxospore formation" is_a: OMP:0007142 ! asexual sporulation phenotype intersection_of: OMP:0000091 ! sporulation phenotype intersection_of: inheres_in GO:0034303 ! myxospore formation relationship: inheres_in GO:0034303 ! myxospore formation created_by: adrienne creation_date: 2011-02-02T03:26:41Z [Term] id: OMP:0000097 name: absence of chemotaxis def: "A chemotaxis phenotype where a motile microbe doesn't display directed movement in response to a specific chemical concentration gradient." [OMP:MCC] is_a: OMP:0000048 ! chemotaxis phenotype created_by: adrienne creation_date: 2011-02-02T03:28:13Z [Term] id: OMP:0000098 name: altered virulence def: "A virulence phenotype where the rate, frequency, time, or extent of the ability of a microbe to cause disease in another organism (host) is altered relative to a designated control." [OMP:MCC] synonym: "compatible interaction" EXACT [] synonym: "virulence" EXACT [] xref: PATO:0002146 is_a: OMP:0000068 ! virulence phenotype created_by: mchibucos creation_date: 2011-04-28T02:11:35Z [Term] id: OMP:0000099 name: hemolysis test def: "A differential test phenotype that describes whether a cell or cells exhibits the ability to lyse red blood cells." [OMP:WAM] is_a: OMP:0007130 ! differential test phenotype created_by: mchibucos creation_date: 2011-06-07T03:17:22Z [Term] id: OMP:0000100 name: colony morphology phenotype def: "A multicellular phenotype dealing with the physical characteristics of an assemblage of microorganisms growing on a solid surface such as the surface of an agar culture medium." [ISBN:9780073302089, OMP:WAM] synonym: "colony appearance phenotype" RELATED [] xref: APO:0000060 "colony appearance" is_a: OMP:0007315 ! population morphology phenotype created_by: Adrienne creation_date: 2011-02-02T02:14:39Z [Term] id: OMP:0000101 name: microbial communication phenotype def: "A multi-organism phenotype where microbial organisms communicate and coordinate their activities through chemical signals that either diffuse through the environment or remain cell associated." [OMP:JCH] is_a: OMP:0005116 ! multi-organism process phenotype created_by: Adrienne creation_date: 2011-02-07T03:45:44Z [Term] id: OMP:0000102 name: colony opacity phenotype def: "A colony morphology phenotype dealing with the degree to which light can pass through a colony." [OMP:WAM] is_a: OMP:0000108 ! colony optical phenotype created_by: mchibucos creation_date: 2011-06-07T12:18:14Z [Term] id: OMP:0000103 name: colony form phenotype def: "A colony morphology phenotype dealing with the basic shape or form of a colony or colonies." [OMP:WAM] is_a: OMP:0000100 ! colony morphology phenotype created_by: Adrienne creation_date: 2011-02-02T02:41:50Z [Term] id: OMP:0000104 name: colony elevation phenotype def: "A colony morphology phenotype dealing with the height or vertical growth of the colony." [OMP:WAM] is_a: OMP:0000100 ! colony morphology phenotype created_by: Adrienne creation_date: 2011-02-02T02:42:12Z [Term] id: OMP:0000105 name: aerotolerant anaerobe def: "An oxygen growth range phenotype, where growth occurs equally well in the presence or absence of oxygen." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0000039 ! oxygen growth range phenotype created_by: mchibucos creation_date: 2011-06-06T03:43:38Z [Term] id: OMP:0000106 name: colony sheen phenotype def: "A colony surface phenotype characterized by a soft luster on the surface." [OMP:JCH] is_a: OMP:0000210 ! colony surface phenotype created_by: Adrienne creation_date: 2011-02-02T02:42:37Z [Term] id: OMP:0000107 name: colony pigmentation phenotype def: "A colony morphology phenotype related to the color of a colony or colonies." [OMP:WAM] is_a: OMP:0000108 ! colony optical phenotype created_by: Adrienne creation_date: 2011-02-02T02:43:25Z [Term] id: OMP:0000108 name: colony optical phenotype def: "A colony morphology phenotype dealing with the interaction of a colony or colonies and light." [OMP:JCH] is_a: OMP:0000100 ! colony morphology phenotype created_by: Adrienne creation_date: 2011-02-02T02:43:46Z [Term] id: OMP:0000109 name: presence of mucoid colonies def: "A mucoid colony phenotype where the colonies are mucoid." [ISBN:1555810489, OMP:WAM] synonym: "viscous colony texture" RELATED [OMP:WAM] is_a: OMP:0007319 ! mucoid colony surface phenotype created_by: Adrienne creation_date: 2011-02-07T03:38:08Z [Term] id: OMP:0000110 name: opaque colony def: "A colony opacity phenotype characterized by inability of light to pass through it." [OMP:WAM] xref: SNOMED:P3-51350 is_a: OMP:0000102 ! colony opacity phenotype created_by: Adrienne creation_date: 2011-02-02T02:45:02Z [Term] id: OMP:0000111 name: presence of motility by swimming def: "A presence of motility phenotype where microbe exhibits smooth movement through a liquid medium." [OMP:MCC] is_a: OMP:0000005 ! presence of motility intersection_of: OMP:0000005 ! presence of motility intersection_of: inheres_in GO:0071975 ! cell swimming relationship: inheres_in GO:0071975 ! cell swimming created_by: adrienne creation_date: 2011-02-07T03:17:40Z [Term] id: OMP:0000112 name: presence of motility by gliding def: "A presence of motility phenotype where a microbe exhibits smooth movement along a solid surface." [OMP:MCC] is_a: OMP:0000005 ! presence of motility intersection_of: OMP:0000005 ! presence of motility intersection_of: inheres_in GO:0071976 ! cell gliding relationship: inheres_in GO:0071976 ! cell gliding created_by: adrienne creation_date: 2011-02-07T03:18:03Z [Term] id: OMP:0000113 name: presence of motility by twitching def: "A presence of motility phenotype where a microbe exhibits movement over moist surfaces by the extension, tethering, and then retraction of polar pili." [OMP:MCC, PMID:12142488] comment: Twitching motility of bacteria typically involves type IV pili. xref: GO:0043107 "type IV pilus-dependent motility" is_a: OMP:0000005 ! presence of motility intersection_of: OMP:0000005 ! presence of motility intersection_of: inheres_in GO:0043107 ! type IV pilus-dependent motility relationship: inheres_in GO:0043107 ! type IV pilus-dependent motility created_by: adrienne creation_date: 2011-02-07T03:18:13Z [Term] id: OMP:0000114 name: translucent colony def: "A colony opacity phenotype characterized by an almost clear but distorted, frosted glass appearance." [OMP:WAM] synonym: "semi-translucent" EXACT [] xref: SNOMED:P3-51370 is_a: OMP:0000102 ! colony opacity phenotype created_by: Adrienne creation_date: 2011-02-02T02:45:20Z [Term] id: OMP:0000115 name: transparent colony def: "A colony opacity phenotype characterized by a clear appearance." [OMP:WAM] xref: SNOMED:P3-51360 is_a: OMP:0000102 ! colony opacity phenotype created_by: Adrienne creation_date: 2011-02-02T02:45:41Z [Term] id: OMP:0000116 name: pigmented colony def: "A colony pigmentation phenotype where colonies are pigmented." [OMP:WAM] is_a: OMP:0000107 ! colony pigmentation phenotype created_by: Adrienne creation_date: 2011-02-02T02:46:17Z [Term] id: OMP:0000117 name: diplococcus def: "A cell arrangement phenotype where an organism forms pairs of coccus cells, which arise from a division event in one plane." [ISBN:9780073402406, OMP:AEZ] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:29:12Z [Term] id: OMP:0000118 name: streptococcus def: "A cell arrangement phenotype where chains of coccus cells arise from division events in one plane." [OMP:AEZ] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:31:37Z [Term] id: OMP:0000119 name: tetrad def: "A cell arrangement phenotype where squares of four coccus cells arise from division in two planes." [OMP:AEZ] synonym: "micrococcus arrangement" EXACT [] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:33:22Z [Term] id: OMP:0000120 name: sarcina def: "A cell arrangement phenotype where cubes of eight coccus cells arise from a division event in three planes." [OMP:AEZ] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:34:40Z [Term] id: OMP:0000121 name: staphylococcus def: "A cell arrangement phenotype where irregular clumps of coccus cells arise from division events in random planes." [OMP:AEZ] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:39:34Z [Term] id: OMP:0000122 name: streptobacillus def: "A cell arrangement phenotype where bacillis cells are arranged in chains." [OMP:AEZ] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:47:10Z [Term] id: OMP:0000123 name: coccobacillus cell shape def: "A cell shape phenotype where a cell is intermediate in shape between a coccus (sphere) and a bacillus (rod)." [ISBN:9780073402406, OMP:MCC] is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-18T02:48:21Z [Term] id: OMP:0000124 name: spirillum def: "A spiral cell shape phenotype where a cell forms a rigid spiral." [ISBN:9780073402406, OMP:AEZ] is_a: OMP:0000086 ! spiral cell shape created_by: adrienne creation_date: 2011-02-18T02:51:54Z [Term] id: OMP:0000125 name: spirochete def: "A spiral cell shape phenotype where a cell forms a flexible spiral." [ISBN:9780073402406, OMP:AEZ] is_a: OMP:0000086 ! spiral cell shape created_by: adrienne creation_date: 2011-02-18T02:52:33Z [Term] id: OMP:0000126 name: trichome-forming def: "A cell arrangement phenotype that consists of chains of cells in which the individual cells, which are usually wider than long, are closely appressed for the whole or the greater part of their width." [OMP:DAS, PMID:5318446] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:55:59Z [Term] id: OMP:0000127 name: sheathed def: "A cell arrangement phenotype where chains of cells are enclosed in a hyaline envelope or sheath." [OMP:MCC] is_a: OMP:0000003 ! cell arrangement phenotype created_by: adrienne creation_date: 2011-02-18T02:59:18Z [Term] id: OMP:0000128 name: stalked cell shape def: "A cell shape phenotype where a cell possesses an appendage called a stalk or prostheca (plural, prosthecae), which is a tubular extension of the cell envelope and contains cytosol." [OMP:MCC, PMID:14245437] synonym: "prosthecate bacterium" EXACT [URL:http\://en.wikipedia.org/wiki/Prosthecate_bacteria] is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-18T02:59:38Z [Term] id: OMP:0000129 name: cuboidal cell shape def: "A cell shape phenotype where a cell has a cube-like shape; there are six sides and the width is approximately equal to the height of the cell." [OMP:MCC] synonym: "square" RELATED [] is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-18T02:59:57Z [Term] id: OMP:0000130 name: star-shaped cell shape def: "A cell shape phenotype where a cell has projections that form points." [OMP:MCC] is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-18T03:00:30Z [Term] id: OMP:0000131 name: lobed cell shape def: "A cell shape phenotype where a cell has curved or rounded projections or divisions (lobes)." [OMP:MCC] xref: PATO:0001979 "lobed" is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-18T03:00:58Z [Term] id: OMP:0000132 name: pleomorphic cell shape def: "A cell shape phenotype where a cell is variable in shape and lacks a single, characteristic form." [ISBN:9780073402406, OMP:MCC] xref: PATO:0001356 is_a: OMP:0000073 ! cell shape phenotype created_by: adrienne creation_date: 2011-02-18T03:01:18Z [Term] id: OMP:0000133 name: absence of motility def: "A motility phenotype where a microbe lacks the ability to perform controlled self-propelled movement that results in translocation of the cell from one place to another." [OMP:MCC] synonym: "non-motile" RELATED [] is_a: OMP:0000001 ! motility phenotype intersection_of: OMP:0000001 ! motility phenotype intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: adrienne creation_date: 2011-02-18T03:33:32Z [Term] id: OMP:0000134 name: spherical akinete def: "An akinete morphology phenotype where the organism forms a spherical akinete." [OMP:JCH] is_a: OMP:0007409 ! akinete morphology phenotype created_by: adrienne creation_date: 2011-02-18T03:40:27Z [Term] id: OMP:0000135 name: akinete envelope attribute def: "An akinete formation phenotype where the traits described are from the cells thick-walled outer membrane." [OMP:JCH] is_a: OMP:0007409 ! akinete morphology phenotype created_by: adrienne creation_date: 2011-02-18T03:41:16Z [Term] id: OMP:0000136 name: in vitro nucleoid shape def: "A nucleoid phenotype dealing with shape of the nucleoid region." [OMP:WAM] is_a: OMP:0000150 ! nucleoid phenotype created_by: adrienne creation_date: 2011-02-21T04:16:30Z [Term] id: OMP:0000137 name: non-pigmented colony def: "A colony pigmentation phenotype colonies are non-pigmented." [OMP:WAM] synonym: "colorless colony" EXACT [] is_a: OMP:0000107 ! colony pigmentation phenotype created_by: Adrienne creation_date: 2011-02-02T02:46:39Z [Term] id: OMP:0000139 name: dull colony sheen def: "A colony form phenotype characterized by a dull luster on the surface." [OMP:JCH] synonym: "matte" RELATED [] synonym: "rough" RELATED [] xref: SNOMED:P3-513150 is_a: OMP:0000106 ! colony sheen phenotype created_by: Adrienne creation_date: 2011-02-02T02:47:21Z [Term] id: OMP:0000140 name: nucleoid spacing def: "A nucleoid phenotype that describes the distribution of within a cell or cells." [OMP:AZ] is_a: OMP:0000150 ! nucleoid phenotype created_by: adrienne creation_date: 2011-02-21T04:25:41Z [Term] id: OMP:0000141 name: regular nucleoid spacing def: "A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit regular spacing." [OMP:AZ] is_a: OMP:0000140 ! nucleoid spacing created_by: adrienne creation_date: 2011-02-21T04:26:57Z [Term] id: OMP:0000142 name: irregular nucleoid spacing def: "A nucleoid spacing phenotype where multiple nucleoids within a single cell exhibit irregular spacing." [OMP:AZ] is_a: OMP:0000140 ! nucleoid spacing created_by: adrienne creation_date: 2011-02-21T04:27:22Z [Term] id: OMP:0000143 name: single nucleoid def: "A nucleoid number phenotype where there is only one nucleoid regions in the cell." [OMP:WAM] is_a: OMP:0000043 ! nucleoid number created_by: adrienne creation_date: 2011-02-21T04:27:48Z [Term] id: OMP:0000144 name: multiple nucleoids def: "A nucleoid number phenotype where there are more than one nucleoid regions in the cell." [OMP:WAM] is_a: OMP:0000043 ! nucleoid number created_by: adrienne creation_date: 2011-02-21T04:28:30Z [Term] id: OMP:0000145 name: nucleoid localization def: "A nucleoid phenotype that describes the location of the nucleoid within a cell or cells." [OMP:JCH] is_a: OMP:0000150 ! nucleoid phenotype created_by: adrienne creation_date: 2011-02-21T04:30:32Z [Term] id: OMP:0000146 name: midcell nucleoid localization def: "A nucleoid localization phenotype where the nucleoid is localized at the center of the cell." [OMP:WAM] is_a: OMP:0000145 ! nucleoid localization created_by: adrienne creation_date: 2011-02-21T04:31:22Z [Term] id: OMP:0000147 name: polar nucleoid localization def: "A nucleoid localization phenotype where the nucleoid is located in one of the polar regions of the cell." [OMP:WAM] is_a: OMP:0000145 ! nucleoid localization created_by: adrienne creation_date: 2011-02-21T04:31:46Z [Term] id: OMP:0000148 name: quarter cell nucleoid localization def: "A nucleoid localization phenotype where the nucleoid is localized midway between the pole and midpoint of a cell." [OMP:AZ] is_a: OMP:0000145 ! nucleoid localization created_by: adrienne creation_date: 2011-02-21T04:32:04Z [Term] id: OMP:0000149 name: colony margin phenotype def: "A colony morphology phenotype dealing with the shape of the edge of a colony viewed with magnification." [OMP:WAM] is_a: OMP:0000100 ! colony morphology phenotype created_by: Adrienne creation_date: 2011-02-02T02:47:43Z [Term] id: OMP:0000150 name: nucleoid phenotype def: "A genetic material phenotype where the trait in question is the nucleoid, the region of a bacterial or archaeal cell to which the DNA is confined." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "genophore" RELATED [] is_a: OMP:0000290 ! genetic material phenotype created_by: adrienne creation_date: 2011-02-21T04:36:21Z [Term] id: OMP:0000151 name: entire margin def: "A colony margin phenotype characterized by smooth growth, with no projections along the edge." [OMP:WAM] xref: SNOMEDCT:12774002 is_a: OMP:0000149 ! colony margin phenotype created_by: Adrienne creation_date: 2011-02-02T02:47:59Z [Term] id: OMP:0000152 name: doublet nucleoid def: "A nucleoid shape phenotype where the nucleoid isolated from a cell is shaped like a dumbbell." [OMP:WAM] synonym: "dumbbell nucleoid" RELATED [OMP:WAM] is_a: OMP:0000136 ! in vitro nucleoid shape created_by: adrienne creation_date: 2011-02-22T02:27:29Z [Term] id: OMP:0000153 name: singlet nucleoid def: "A nucleoid shape phenotype where the nucleoid isolated from a cell is compacted." [OMP:WAM] is_a: OMP:0000136 ! in vitro nucleoid shape created_by: adrienne creation_date: 2011-02-22T02:27:58Z [Term] id: OMP:0000154 name: undulate margin def: "A colony margin phenotype characterized by wavy growth along the colony edge." [OMP:WAM] xref: SNOMEDCT:48408000 "Bacterial colony morphology, undulate margin" is_a: OMP:0000149 ! colony margin phenotype created_by: Adrienne creation_date: 2011-02-02T02:48:11Z [Term] id: OMP:0000155 name: lobate margin def: "A colony margin phenotype characterized by lobed growth along the colony edge." [OMP:WAM] xref: SNOMEDCT:36580002 is_a: OMP:0000149 ! colony margin phenotype created_by: Adrienne creation_date: 2011-02-02T02:48:33Z [Term] id: OMP:0000156 name: erose margin def: "A colony margin phenotype characterized by growth that appears jagged or zig-zagged along the edge of the colony." [OMP:WAM] xref: SNOMEDCT:86734000 is_a: OMP:0000149 ! colony margin phenotype created_by: Adrienne creation_date: 2011-02-02T02:48:46Z [Term] id: OMP:0000157 name: filiform margin def: "A colony margin phenotype characterized by thread or filamentous shaped edge." [OMP:JCH] synonym: "filamentous margin" RELATED [] xref: SNOMEDCT:42844005 "Bacterial colony morphology, filamentous margin" is_a: OMP:0000149 ! colony margin phenotype created_by: Adrienne creation_date: 2011-02-02T02:49:05Z [Term] id: OMP:0000158 name: curled margin def: "A colony margin phenotype characterized by growth that appears as waves or curls along the edge of the colony." [OMP:JCH] xref: SNOMEDCT:85764001 is_a: OMP:0000149 ! colony margin phenotype created_by: Adrienne creation_date: 2011-02-02T02:49:30Z [Term] id: OMP:0000159 name: absence of aerotaxis def: "An aerotaxis phenotype where a motile microbe doesn't display directed movement in response to environmental oxygen (O2)." [OMP:MCC] is_a: OMP:0000047 ! aerotaxis phenotype intersection_of: OMP:0000047 ! aerotaxis phenotype intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: adrienne creation_date: 2011-03-02T02:06:09Z [Term] id: OMP:0000160 name: flat colony elevation def: "A colony elevation phenotype characterized by no growth above the medium." [OMP:WAM] xref: SNOMED:P3-51130 is_a: OMP:0000104 ! colony elevation phenotype created_by: Adrienne creation_date: 2011-02-02T02:49:49Z [Term] id: OMP:0000161 name: raised colony elevation def: "A colony elevation phenotype characterized by uniform growth above the medium." [OMP:WAM] xref: SNOMED:P3-51140 is_a: OMP:0000104 ! colony elevation phenotype created_by: Adrienne creation_date: 2011-02-02T02:50:01Z [Term] id: OMP:0000162 name: convex colony elevation def: "A colony elevation phenotype characterized by sloping up from the edges." [OMP:WAM] xref: SNOMEDCT:26875006 "Bacterial colony elevation, convex" is_a: OMP:0000104 ! colony elevation phenotype created_by: Adrienne creation_date: 2011-02-02T02:50:11Z [Term] id: OMP:0000163 name: pulvinate colony elevation def: "A colony elevation phenotype characterized by sloping steeply from edges and very high in the center." [OMP:WAM] is_a: OMP:0000104 ! colony elevation phenotype created_by: Adrienne creation_date: 2011-02-02T02:50:30Z [Term] id: OMP:0000164 name: umbonate colony elevation def: "A colony elevation phenotype characterized by raised growth in the center." [OMP:WAM] xref: SNOMEDCT:70929009 "Bacterial colony elevation, umbonate" is_a: OMP:0000104 ! colony elevation phenotype created_by: Adrienne creation_date: 2011-02-02T02:50:42Z [Term] id: OMP:0000165 name: increased colony size def: "A colony size phenotype where colony size is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006164 ! altered colony size phenotype created_by: mchibucos creation_date: 2011-06-07T01:55:00Z [Term] id: OMP:0000166 name: circular colony def: "A colony form phenotype characterized by growth in a round shape." [OMP:WAM] xref: SNOMEDCT:64781005 is_a: OMP:0000103 ! colony form phenotype created_by: Adrienne creation_date: 2011-02-02T02:51:18Z [Term] id: OMP:0000167 name: irregular colony def: "A colony form phenotype characterized by growth without a defined shape or size." [OMP:WAM] xref: SNOMEDCT:39696006 is_a: OMP:0000103 ! colony form phenotype created_by: Adrienne creation_date: 2011-02-02T02:51:35Z [Term] id: OMP:0000168 name: rhizoid colony def: "A colony form phenotype characterized by the growth of thin, branching projections." [OMP:WAM] xref: SNOMEDCT:113047000 is_a: OMP:0000103 ! colony form phenotype created_by: Adrienne creation_date: 2011-02-02T02:51:57Z [Term] id: OMP:0000169 name: spindle colony def: "A colony form phenotype characterized by growth being wide in the middle then tapering at both ends." [OMP:JCH] xref: SNOMEDCT:77324006 is_a: OMP:0000103 ! colony form phenotype created_by: Adrienne creation_date: 2011-02-02T02:52:30Z [Term] id: OMP:0000171 name: microaerophile def: "An oxygen growth range phenotype where growth and reproduction requires oxygen but at levels below that found in air (approx. 21%)." [ISBN:9780073402406, OMP:WAM] comment: Optimal oxygen levels for growth of typical microaerophilic bacteria is 2 to 10% O2, and growth is impaired by atmospheric oxygen levels (approx. 21%). is_a: OMP:0005255 ! presence of hypoxic growth created_by: mchibucos creation_date: 2011-06-06T03:44:11Z [Term] id: OMP:0000172 name: response to chemical stimulus phenotype def: "A stress response phenotype dealing with the response to exposure to chemical stimuli." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: mchibucos creation_date: 2011-06-06T04:16:08Z [Term] id: OMP:0000173 name: response to stress phenotype def: "A biological process phenotype related to a change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation)." [FYPO:0002549, GO:0006950, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0007194 ! biological process phenotype created_by: Adrienne creation_date: 2011-02-02T03:13:32Z [Term] id: OMP:0000174 name: growth phenotype def: "A microbial phenotype related to the increase in size or mass over time of an entire organism, a part of an organism, or a cell." [GO:0040007, OMP:WAM] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype.\n\nFor phenotypes affecting growth of a population, see OMP:0007167 ! population growth phenotype. xref: GO:0040007 "growth" is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0040007 ! growth relationship: inheres_in GO:0040007 ! growth created_by: Adrienne creation_date: 2011-02-02T03:13:59Z [Term] id: OMP:0000175 name: nanotube phenotype def: "A cell projection phenotype where the structure in question is a tube." [OMP:DAS] is_a: OMP:0000083 ! cell projection morphology phenotype created_by: mchibucos creation_date: 2011-06-07T02:59:54Z [Term] id: OMP:0000176 name: biofilm phenotype def: "A multi-organism phenotype dealing with the process in which microorganisms attach to and grow on a surface and produce extracellular polymers that facilitate attachment and matrix formation." [GO:0042710, OMP:WAM] is_a: OMP:0005116 ! multi-organism process phenotype created_by: Adrienne creation_date: 2011-02-02T03:17:19Z [Term] id: OMP:0000177 name: liquid culture morphology phenotype def: "A growth phenotype dealing with the morphological characteristics of a culture growing in a liquid medium." [OMP:WAM] xref: APO:0000064 "liquid culture appearance" is_a: OMP:0007315 ! population morphology phenotype created_by: Adrienne creation_date: 2011-02-02T03:20:39Z [Term] id: OMP:0000178 name: flocculation phenotype def: "A liquid culture morphology phenotype where cells aggregate together in suspension to form clumps of many cells known as flocs." [GO:0000128, ISBN:9780763743031, OMP:WAM] synonym: "clumping" BROAD [] synonym: "flocculation" EXACT [] xref: APO:0000065 "flocculation" is_a: OMP:0000177 ! liquid culture morphology phenotype created_by: Adrienne creation_date: 2011-02-02T03:21:00Z [Term] id: OMP:0000179 name: colony size phenotype def: "A colony morphology phenotype dealing with the size of the colony." [OMP:WAM] is_a: OMP:0000100 ! colony morphology phenotype created_by: Adrienne creation_date: 2011-02-02T03:22:43Z [Term] id: OMP:0000180 name: metabolic phenotype def: "A microbial phenotype that deals with the chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances." [GO:0008152] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "Metabolism" EXACT [] is_a: OMP:0000000 ! microbial phenotype created_by: mchibucos creation_date: 2011-06-06T03:59:59Z [Term] id: OMP:0000181 name: colony with diffusible pigment def: "A colony pigmentation phenotype characterized by the presence of diffusible/water soluble pigments that color the agar around the colony." [OMP:WAM] is_a: OMP:0000116 ! pigmented colony created_by: mchibucos creation_date: 2011-06-07T12:18:54Z [Term] id: OMP:0000182 name: gas production test def: "A differential test phenotype that describes ability of an organism to produce a gas, such as CO2, as the result of metabolic activities during growth." [OMP:JCH] is_a: OMP:0007130 ! differential test phenotype created_by: Adrienne creation_date: 2011-02-07T03:52:30Z [Term] id: OMP:0000183 name: anaerobic respiration with sulfate as the terminal acceptor def: "A presence of anaerobic respiration phenotype where sulfate (SO4) is used as the terminal electron acceptor." [ISBN:978-0-07-340240-6, OMP:DAS] synonym: "dissimilatory sulfate reduction" EXACT [ISBN:978-0-07-340240-6] synonym: "sulfide production" NARROW [] xref: GO:0019420 "dissimilatory sulfate reduction" is_a: OMP:0007181 ! presence of anaerobic respiration created_by: Adrienne creation_date: 2011-02-07T03:52:44Z [Term] id: OMP:0000184 name: obligate anaerobe def: "An oxygen growth range phenotype where growth does not occur in the presence of oxygen." [ISBN:9780073402406, OMP:WAM] synonym: "strict anaerobe" EXACT [] is_a: OMP:0000039 ! oxygen growth range phenotype created_by: Adrienne creation_date: 2011-02-02T03:29:34Z [Term] id: OMP:0000185 name: obligate aerobe def: "An oxygen growth range phenotype where growth and reproduction is dependent on atmospheric oxygen (approx. 21%)." [ISBN:9780073402406, OMP:WAM] synonym: "strict aerobe" EXACT [] is_a: OMP:0005253 ! presence of aerobic growth created_by: Adrienne creation_date: 2011-02-02T03:29:51Z [Term] id: OMP:0000187 name: granulation phenotype def: "A liquid culture morphology phenotype where cells group together and form small particles in the medium." [ISBN:9780763743031, OMP:WAM] synonym: "granulation in liquid" EXACT [] synonym: "precipitation in liquid culture" RELATED [] is_a: OMP:0000177 ! liquid culture morphology phenotype created_by: mchibucos creation_date: 2011-06-07T02:22:14Z [Term] id: OMP:0000188 name: gram positive def: "A gram stain phenotype where a cell or cells retain crystal violet stain when decolorized with an organic solvent such as ethanol." [OMP:DAS] xref: GO:0009275 "Gram-positive-bacterium-type cell wall" is_a: OMP:0000191 ! gram stain phenotype created_by: Adrienne creation_date: 2011-02-02T03:34:29Z [Term] id: OMP:0000189 name: gram negative def: "A gram stain phenotype where a cell or cells do not retain crystal violet stain when decolorized with an organic solvent such as ethanol." [OMP:DAS] xref: GO:0009276 "Gram-negative-bacterium-type cell wall" is_a: OMP:0000191 ! gram stain phenotype created_by: Adrienne creation_date: 2011-02-02T03:34:45Z [Term] id: OMP:0000190 name: gram variable def: "A gram stain phenotype where a cell or cells give variable results to the gram stain." [OMP:DAS] is_a: OMP:0000191 ! gram stain phenotype created_by: Adrienne creation_date: 2011-02-02T03:34:58Z [Term] id: OMP:0000191 name: gram stain phenotype def: "A cell staining phenotype where microorganisms are grouped based on their ability to retain crystal violet stain when decolorized with an organic solvent such as ethanol." [ISBN:978-0-07-340240-6, ISBN:978-0077292812, OMP:DAS] xref: SNOMEDCT:385484003 "Gram stain" is_a: OMP:0000214 ! cell staining phenotype created_by: Adrienne creation_date: 2011-02-02T03:35:15Z [Term] id: OMP:0000192 name: chemical production phenotype def: "A metabolic phenotype that deals with the chemical reactions and pathways resulting in the formation of chemicals." [OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000180 ! metabolic phenotype created_by: Adrienne creation_date: 2011-02-03T11:24:08Z [Term] id: OMP:0000194 name: catalase positive def: "A catalase test phenotype where an organism exhibits catalase activity." [OMP:JCH] is_a: OMP:0000218 ! catalase test created_by: mchibucos creation_date: 2011-06-06T04:28:49Z [Term] id: OMP:0000195 name: decreased catalase activity def: "An altered catalase activity phenotype where catalase activity is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006077 ! altered catalase test result created_by: mchibucos creation_date: 2011-06-06T04:29:20Z [Term] id: OMP:0000196 name: increased catalase activity def: "An altered catalase activity phenotype where catalase activity is increased relative to a designated control." [OMP:JCH] synonym: "positive regulation of catalase activity" NARROW [GO:1902553] is_a: OMP:0006077 ! altered catalase test result created_by: mchibucos creation_date: 2011-06-06T04:29:39Z [Term] id: OMP:0000197 name: microbe-host interaction phenotype def: "A microbial phenotype related to the interactions between a microbe and its host(s)." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000287 "interaction with host/environment" xref: GO:0051704 "multi-organism process" is_a: OMP:0000000 ! microbial phenotype created_by: Adrienne creation_date: 2011-02-03T11:25:01Z [Term] id: OMP:0000198 name: catalase negative def: "A catalase test phenotype where an organism doesn't exhibit catalase activity." [OMP:JCH] is_a: OMP:0000218 ! catalase test created_by: mchibucos creation_date: 2011-06-06T04:30:12Z [Term] id: OMP:0000199 name: acid-fast staining phenotype def: "A cell-staining phenotype where a cell or cells are classified based on whether they are decolorized by an acid-alcohol mixture after staining, typically with carbolfuchsin." [ISBN:978-0-07-729281-1, OMP:DAS] is_a: OMP:0000214 ! cell staining phenotype created_by: Adrienne creation_date: 2011-02-03T11:38:46Z [Term] id: OMP:0000200 name: colony with non-diffusible pigment def: "A colony pigmentation phenotype characterized by pigmentation only in the colony." [OMP:WAM] is_a: OMP:0000116 ! pigmented colony created_by: mchibucos creation_date: 2011-06-07T12:19:32Z [Term] id: OMP:0000201 name: nanotube mediated communication def: "A microbial communication phenotype communication is facilitated between one or more microbes by a connected nanotube." [OMP:WAM, PMID:21335240] synonym: "nanotubule mediated communication" EXACT [] is_a: OMP:0000101 ! microbial communication phenotype created_by: Adrienne creation_date: 2011-03-02T01:41:52Z [Term] id: OMP:0000202 name: outer membrane vesicles phenotype def: "A cell envelope phenotype that describes the ability of a cell or cells to produce outer membrane vesicles." [OMP:JCH, PMID:20825345] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000085 ! cell envelope morphology phenotype created_by: Adrienne creation_date: 2011-03-02T01:43:12Z [Term] id: OMP:0000203 name: capsule phenotype def: "A cell envelope phenotype where the trait in question is the capsule, a layer of polysaccharide or poly-amino acids surrounding a microbial cell. When present, the capsule is the outermost layer of the cell envelope." [ISBN:9780073402406, OMP:DAS] synonym: "glycocalyx" RELATED [] synonym: "slime layer" RELATED [] xref: APO:0000331 "capsule formation" is_a: OMP:0000085 ! cell envelope morphology phenotype created_by: mchibucos creation_date: 2011-06-07T09:44:51Z [Term] id: OMP:0000204 name: presence of capsule def: "A capsule phenotype where a cell or cells have a capsule." [OMP:DAS] comment: When present, the capsule layer lies outside the cell wall and/or outer membrane. synonym: "glycocalyx" RELATED [OMP:DAS] synonym: "slime layer" RELATED [OMP:DAS] is_a: OMP:0000203 ! capsule phenotype created_by: mchibucos creation_date: 2011-06-07T09:45:20Z [Term] id: OMP:0000205 name: forms single species biofilm def: "A biofilm phenotype where the biofilm is formed by a single species." [OMP:WAM] is_a: OMP:0000176 ! biofilm phenotype created_by: mchibucos creation_date: 2011-06-07T02:26:30Z [Term] id: OMP:0000206 name: altered hemolysis test result def: "A hemolysis test phenotype where the ability to cause hemolysis is altered relative to a designated control." [OMP:WAM] is_a: OMP:0000099 ! hemolysis test is_a: OMP:0007131 ! altered differential test result created_by: mchibucos creation_date: 2011-06-07T03:17:46Z [Term] id: OMP:0000207 name: serotype phenotype def: "A microbial phenotype that is distinguished by the presence a specific surface antigen." [OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "antigenic typing phenotype" RELATED [] synonym: "serological test phenotype" RELATED [] synonym: "serovar" EXACT [] is_a: OMP:0000000 ! microbial phenotype created_by: Adrienne creation_date: 2011-03-02T02:16:33Z [Term] id: OMP:0000208 name: absence of hemolysis def: "A hemolysis test phenotype where a cell or cells does not cause hemolysis." [OMP:WAM] is_a: OMP:0000099 ! hemolysis test created_by: mchibucos creation_date: 2011-06-07T03:18:33Z [Term] id: OMP:0000209 name: fluorescent colony def: "A colony pigmentation phenotype where the prominent morphological characteristic of the colony(ies) is the presence of fluorescence." [OMP:WAM] is_a: OMP:0000107 ! colony pigmentation phenotype created_by: mchibucos creation_date: 2011-06-07T12:20:31Z [Term] id: OMP:0000210 name: colony surface phenotype def: "A colony morphology phenotype that describes the appearance of the surface of a colony or colonies." [OMP:WAM] is_a: OMP:0000100 ! colony morphology phenotype created_by: mchibucos creation_date: 2011-06-07T12:31:24Z [Term] id: OMP:0000211 name: absence of capsule def: "A capsule phenotype where a cell or cells lack capsule." [OMP:DAS] is_a: OMP:0000203 ! capsule phenotype created_by: mchibucos creation_date: 2011-06-07T09:49:20Z [Term] id: OMP:0000212 name: smooth colony surface def: "A colony surface phenotype where colonies have a shiny glistening surface." [ISBN:1555810489, OMP:WAM] xref: SNOMEDCT:90926009 "Bacterial colony surface, smooth" is_a: OMP:0000210 ! colony surface phenotype created_by: mchibucos creation_date: 2011-06-07T12:32:12Z [Term] id: OMP:0000213 name: increased number of flagella def: "An altered flagellum phenotype where the number of flagella per cell is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007432 ! altered number of flagella created_by: mchibucos creation_date: 2011-06-07T09:53:17Z [Term] id: OMP:0000214 name: cell staining phenotype def: "A microbial phenotype where a cell or cells are treated with a dye or dyes for purposes of identification and classification." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000061 "colony color" is_a: OMP:0000000 ! microbial phenotype created_by: Adrienne creation_date: 2011-02-03T01:33:37Z [Term] id: OMP:0000215 name: decreased number of flagella def: "An altered flagellum phenotype where the number of flagella per cell is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007432 ! altered number of flagella created_by: mchibucos creation_date: 2011-06-07T09:54:51Z [Term] id: OMP:0000216 name: aerobic respiration phenotype def: "A respiration phenotype where oxygen (O2) is used as the terminal electron acceptor." [ISBN:978-0-07-340240-6, OMP:DAS] is_a: OMP:0007112 ! respiration phenotype created_by: Adrienne creation_date: 2011-02-07T03:53:18Z [Term] id: OMP:0000217 name: increased hemolysis def: "An altered hemolysis phenotype where hemolysis is increased relative to a designated control." [OMP:WAM] is_a: OMP:0000206 ! altered hemolysis test result created_by: mchibucos creation_date: 2011-06-07T03:19:00Z [Term] id: OMP:0000218 name: catalase test def: "A differential test phenotype that relates to the presence or absence of catalase, an enzyme that catalyzes the decomposition of hydrogen peroxide into oxygen and water." [ISBN:9780895828309, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nCatalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O [EC:1.11.1.6]. xref: GO:0004096 "catalase activity" is_a: OMP:0007130 ! differential test phenotype created_by: Adrienne creation_date: 2011-02-03T04:43:28Z [Term] id: OMP:0000219 name: decarboxylase test def: "A differential test phenotype that describes the ability of an organism to catalyze the removal of a carboxyl group from an amino acid, typically lysine, ornithine, or arginine." [ISBN:9780895828309, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0007130 ! differential test phenotype created_by: Adrienne creation_date: 2011-02-03T04:43:53Z [Term] id: OMP:0000220 name: oxidase test def: "A differential test phenotype that relates to the presence or absence of cytochrome oxidase based on the ability of an organism to oxidize certain aromatic amines to form colored end products." [ISBN:9780895828309, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0007130 ! differential test phenotype created_by: Adrienne creation_date: 2011-02-03T04:44:11Z [Term] id: OMP:0000221 name: enzymatic activity phenotype def: "A microbial phenotype that affects an enzymatic activity. Enzymes are biological molecules that catalyze biochemical reactions at physiological temperatures. Enzymes possess specific binding sites for their substrates (reactants) and are usually composed wholly or largely of protein or RNA. Catalytic RNAs are also called ribozymes." [ISBN:0198506732, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "catalytic activity" RELATED [] xref: FYPO:0000654 "catalytic activity phenotype" xref: GO:0003824 "catalytic activity" is_a: OMP:0000000 ! microbial phenotype created_by: Adrienne creation_date: 2011-02-03T04:44:39Z [Term] id: OMP:0000222 name: urease test def: "A differential test phenotype that relates to the presence or absence of urease, an enzyme that hydrolyzes urea to ammonia and carbon dioxide." [ISBN:9780895828309, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0009039 "urease activity" is_a: OMP:0007130 ! differential test phenotype created_by: Adrienne creation_date: 2011-02-03T04:45:37Z [Term] id: OMP:0000224 name: energy metabolism phenotype def: "A metabolic phenotype that deals with the specific process an organism uses to produce energy carriers." [OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "bioenergetics" EXACT [] is_a: OMP:0000180 ! metabolic phenotype created_by: mchibucos creation_date: 2011-06-06T04:53:09Z [Term] id: OMP:0000225 name: carbon dioxide production def: "A chemical production phenotype where carbon dioxide is produced." [OMP:JCH] is_a: OMP:0000192 ! chemical production phenotype created_by: Adrienne creation_date: 2011-02-07T03:53:37Z [Term] id: OMP:0000228 name: rough colony surface def: "A colony surface phenotype where a colony or colonies have a dull, bumpy, granular, or matte surface." [ISBN:1555810489, OMP:WAM] xref: SNOMEDCT:77092005 "Bacterial colony surface, rough" is_a: OMP:0000210 ! colony surface phenotype created_by: mchibucos creation_date: 2011-06-07T12:32:41Z [Term] id: OMP:0000229 name: colony consistency phenotype def: "A colony morphology phenotype that describes the consistency or texture of a colony or colonies when tested with a needle." [ISBN:1555810489, OMP:WAM] synonym: "colony texture" RELATED [] is_a: OMP:0000100 ! colony morphology phenotype created_by: mchibucos creation_date: 2011-06-07T12:34:58Z [Term] id: OMP:0000230 name: rugose colony surface def: "A colony surface phenotype that is characterized by a surface that is wrinkled." [OMP:JCH] synonym: "wrinkled colony surface" RELATED [] is_a: OMP:0000210 ! colony surface phenotype created_by: mchibucos creation_date: 2011-06-07T12:35:30Z [Term] id: OMP:0000231 name: growth into medium def: "A colony elevation phenotype characterized by growth into the medium not above it." [OMP:WAM] is_a: OMP:0000104 ! colony elevation phenotype created_by: mchibucos creation_date: 2011-06-07T12:38:26Z [Term] id: OMP:0000232 name: iridescent colony def: "A colony opacity phenotype characterized by varying colors being observed in reflected light." [OMP:WAM] is_a: OMP:0000107 ! colony pigmentation phenotype created_by: mchibucos creation_date: 2011-06-07T12:39:13Z [Term] id: OMP:0000234 name: butyrous colony consistency def: "A colony consistency phenotype where a colony or colonies have a butter-like consistency." [ISBN:1555810489, OMP:WAM] synonym: "buttery colony consistency" EXACT [] xref: SNOMEDCT:25778006 "Bacterial colony consistency, butyrous" is_a: OMP:0000229 ! colony consistency phenotype created_by: mchibucos creation_date: 2011-06-07T12:41:24Z [Term] id: OMP:0000236 name: dry colony consistency def: "A colony consistency phenotype where a colony or colonies have a brittle or powdery consistency." [ISBN:1555810489, OMP:WAM] synonym: "friable colony" EXACT [] xref: SNOMEDCT:87916001 "Bacterial colony consistency, friable" is_a: OMP:0000229 ! colony consistency phenotype created_by: mchibucos creation_date: 2011-06-07T12:42:40Z [Term] id: OMP:0000237 name: colony odor phenotype def: "A morphology phenotype dealing with the smell a colony produces." [OMP:WAM] is_a: OMP:0000100 ! colony morphology phenotype created_by: mchibucos creation_date: 2011-06-07T12:45:12Z [Term] id: OMP:0000238 name: crateriform colony elevation def: "A colony elevation phenotype characterized by crater like growth." [OMP:WAM] is_a: OMP:0000104 ! colony elevation phenotype created_by: mchibucos creation_date: 2011-06-07T01:11:04Z [Term] id: OMP:0000239 name: plicate colony surface def: "A colony surface phenotype that is characterized by a surface arranged in parallel folds or ridges; pleated." [OMP:JCH] is_a: OMP:0000210 ! colony surface phenotype created_by: mchibucos creation_date: 2011-06-07T01:11:50Z [Term] id: OMP:0000240 name: punctiform colony def: "A colony form phenotype where a colony or colonies are small, but not microscopic, with a diameter of <1 mm." [OMP:WAM] xref: SNOMEDCT:55699002 is_a: OMP:0000103 ! colony form phenotype created_by: mchibucos creation_date: 2011-06-07T01:50:03Z [Term] id: OMP:0000241 name: decreased colony size def: "A colony size phenotype where colony size is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006164 ! altered colony size phenotype created_by: mchibucos creation_date: 2011-06-07T01:55:22Z [Term] id: OMP:0000242 name: concentrically ringed surface colony def: "A colony surface phenotype characterized by rippled surface that radiate outward from a central point or axis." [OMP:JCH] synonym: "concentric colony surface texture" EXACT [] is_a: OMP:0000210 ! colony surface phenotype created_by: mchibucos creation_date: 2011-06-07T01:58:00Z [Term] id: OMP:0000243 name: sectored colony def: "A colony form phenotype characterized by the formation of wedged shaped sectors of varying colors and appearance in colonies growing on a solid substrate." [OMP:WAM] is_a: OMP:0000103 ! colony form phenotype created_by: mchibucos creation_date: 2011-06-07T02:04:20Z [Term] id: OMP:0000244 name: papillated colony def: "A colony form phenotype characterized by growth of small, round or cone-shaped protuberances." [OMP:JCH] synonym: "colony papillation" EXACT [] is_a: OMP:0000103 ! colony form phenotype created_by: mchibucos creation_date: 2011-06-07T02:06:19Z [Term] id: OMP:0000245 name: participates in multi-species biofilm def: "A biofilm phenotype where the formation involves two or more species." [OMP:WAM] is_a: OMP:0000176 ! biofilm phenotype created_by: mchibucos creation_date: 2011-06-07T02:27:00Z [Term] id: OMP:0000246 name: presence of nanotubes def: "A nanotube phenotype where a cell or cells have the ability to produce nanotubes." [OMP:JCH] is_a: OMP:0000175 ! nanotube phenotype created_by: mchibucos creation_date: 2011-06-07T03:00:25Z [Term] id: OMP:0000247 name: absence of nanotubes def: "A nanotube phenotype where a cell or cells lack the ability to produce nanotubes." [OMP:JCH] is_a: OMP:0000175 ! nanotube phenotype created_by: mchibucos creation_date: 2011-06-07T03:01:32Z [Term] id: OMP:0000248 name: biofilm architecture phenotype def: "A biofilm phenotype dealing with the structural formation of the biofilm." [OMP:WAM] is_a: OMP:0000176 ! biofilm phenotype created_by: mchibucos creation_date: 2011-06-07T03:05:56Z [Term] id: OMP:0000249 name: decreased hemolysis def: "An altered hemolysis phenotype where hemolysis is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0000206 ! altered hemolysis test result created_by: mchibucos creation_date: 2011-06-07T03:19:25Z [Term] id: OMP:0000252 name: metabolite accumulation def: "A metabolic phenotype that deals with the accumulation of small intermediate or products of metabolism." [OMP:JCH] is_a: OMP:0000180 ! metabolic phenotype created_by: mchibucos creation_date: 2011-07-21T12:51:15Z [Term] id: OMP:0000253 name: gene expression phenotype def: "A microbial phenotype that affects expression of a gene or genes. Gene expression includes transcription, RNA processing, and, for protein-coding genes, translation and protein maturation." [ISBN:9781615835409, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000142 "gene expression phenotype" xref: GO:0010467 "gene expression" is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0010467 ! gene expression relationship: inheres_in GO:0010467 ! gene expression created_by: mchibucos creation_date: 2011-07-21T01:03:06Z [Term] id: OMP:0000254 name: constitutive transcription def: "An increased transcription phenotype where a gene or genes whose transcription is normally regulated are now transcribed constitutively." [OMP:WAM] synonym: "constitutive gene expression" EXACT [] is_a: OMP:0007117 ! increased transcription created_by: mchibucos creation_date: 2011-07-21T01:05:42Z [Term] id: OMP:0000255 name: plating morphology phenotype def: "A growth phenotype related to the morphology of colonies on solid medium." [OMP:WAM] comment: This term was made obsolete because it is redundant with OMP:0000100 ! colony morphology phenotype. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T01:34:48Z [Term] id: OMP:0000256 name: MacConkey agar phenotype def: "A colony morphology phenotype that describes the appearance of colonies on MacConkey agar indicator medium." [OMP:AZ] comment: This term was made obsolete because the appearance of colonies on MacConkey agar was determined to be evidence for a phenotype rather than a phenotype itself. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T01:35:25Z [Term] id: OMP:0000258 name: red colony on MacConkey agar def: "A colony morphology phenotype where cells form a red colony on MacConkey agar medium." [OMP:AZ] comment: This term was made obsolete because 'red colony on MacConkey agar' was determined to be evidence for a phenotype, i.e. utilization of a particular sugar, rather than the phenotype itself. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T01:38:10Z [Term] id: OMP:0000267 name: increased gene expression def: "An altered gene expression phenotype where expression of a gene or genes is increased relative to a designated control." [OMP:WAM] is_a: OMP:0007080 ! altered gene expression created_by: mchibucos creation_date: 2011-07-21T02:01:35Z [Term] id: OMP:0000268 name: decreased gene expression def: "An altered gene expression phenotype where expression of a gene or genes is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0007080 ! altered gene expression created_by: mchibucos creation_date: 2011-07-21T02:02:26Z [Term] id: OMP:0000269 name: protein activity phenotype def: "A microbial phenotype related to the enzymatic or other activity of a protein." [APO:0000022, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nDuring OMP call on 2016-01-27 we decided to delete the term OMP:0000269 ! protein activity phenotype because when observing a phenotype we don't know what kind of molecule is doing something, just that a particular activity is absent, present, or altered. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T02:05:51Z [Term] id: OMP:0000274 name: antimicrobial agent resistance phenotype def: "A microbial phenotype related to resistance or sensitivity to agents that kill (microbiocidal) or inhibit growth (microbiostatic) of a microbe." [CHEBI:33281, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "antibiotic resistance phenotype" NARROW [] synonym: "antibiotic sensitivity phenotype" RELATED [] synonym: "antifungal resistance phenotype" NARROW [] synonym: "antimetabolite resistance phenotype" NARROW [] synonym: "antimicrobial compound sensitivity phenotype" RELATED [] synonym: "antiviral resistance phenotype" NARROW [] xref: CHEBI:33281 "antimicrobial agent" is_a: OMP:0000000 ! microbial phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: towards CHEBI:33281 ! antimicrobial agent relationship: towards CHEBI:33281 ! antimicrobial agent created_by: mchibucos creation_date: 2011-07-21T02:21:21Z [Term] id: OMP:0000280 name: increased cell length def: "An altered cell morphology in which microbial cells are longer than a designated control; i.e. the maximum distance between the cell ends is greater than a designated control." [OMP:DAS] comment: The mukB mutant appear to have elongated cell length. This is different from cell filamentation. PMID:1989883. synonym: "" RELATED [] xref: FYPO:0000017 "elongated cell" is_a: OMP:0000041 ! increased cell size created_by: mchibucos creation_date: 2011-07-21T02:37:15Z [Term] id: OMP:0000282 name: slower growth rate def: "An altered growth rate phenotype where the rate at which a cell or cells multiplies is decreased relative to a designated control." [OMP:DAS] synonym: "decreased growth rate (generations per unit time)" RELATED [] synonym: "increased generation time" EXACT [] is_a: OMP:0007115 ! altered growth rate created_by: mchibucos creation_date: 2011-07-21T02:43:01Z [Term] id: OMP:0000283 name: faster growth rate def: "An altered growth rate phenotype where the rate at which a cell or cells multiplies is increased relative to a designated control." [OMP:DAS] synonym: "decreased generation time" EXACT [] synonym: "increased growth rate (generations per unit time)" RELATED [] is_a: OMP:0007115 ! altered growth rate created_by: mchibucos creation_date: 2011-07-21T02:43:22Z [Term] id: OMP:0000289 name: increased number of anucleoid cells def: "An anucleoid phenotype where the fraction of anucleoid cells in a population is increased relative to a designated control." [OMP:DAS] comment: In Escherichia coli mutations in the muk or par genes result in an increased number of anucleoid cells. is_a: OMP:0000042 ! anucleoid created_by: mchibucos creation_date: 2011-07-21T04:07:44Z [Term] id: OMP:0000290 name: genetic material phenotype def: "A microbial phenotype dealing with the various aspects of the molecular carrier of an organism's primary genetic information." [ISBN:9780198529170, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "double stranded DNA" NARROW [ISBN:9780198529170] synonym: "RNA" NARROW [ISBN:9780198529170] synonym: "single stranded DNA" NARROW [ISBN:9780198529170] is_a: OMP:0000000 ! microbial phenotype created_by: mchibucos creation_date: 2011-07-21T04:24:02Z [Term] id: OMP:0000291 name: genophore phenotype def: "A genophore is the chromosome equivalent in any organism, cellular organelle, or virus, however, the term is commonly used to refer to chromosomes other than the nuclear chromosomes of eukaryotes." [ISBN:9780195307610, ISBN:9781613441138, OMP:DAS] comment: This term was obsoleted because it is rarely used. Instead, genophore phenotype is listed as a synonym of nucleoid phenotype. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T04:25:09Z [Term] id: OMP:0000294 name: DNA supercoiling phenotype def: "A genetic material phenotype related to supercoiling of a double-stranded DNA molecule." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000290 ! genetic material phenotype created_by: mchibucos creation_date: 2011-07-21T04:46:29Z [Term] id: OMP:0000295 name: presence of negative supercoiling def: "A DNA supercoiling phenotype where the DNA twists around its axis in the opposite direction from the clockwise turns of the right-handed double helix." [ISBN:9781613441138] synonym: "underwound DNA" RELATED [] is_a: OMP:0000294 ! DNA supercoiling phenotype created_by: mchibucos creation_date: 2011-07-21T04:47:38Z [Term] id: OMP:0000296 name: presence of positive supercoiling def: "A DNA supercoiling phenotype where the DNA twists around its axis in the same direction as the clockwise turns of the right-handed double helix." [ISBN:9781613441138] synonym: "overwound DNA" RELATED [] is_a: OMP:0000294 ! DNA supercoiling phenotype created_by: mchibucos creation_date: 2011-07-21T04:48:22Z [Term] id: OMP:0000299 name: galactose-1-phosphate uridyl transferase activity def: "An enzymatic activity phenotype where galactose-1-phosphate uridyl transferase activity is present." [] comment: This term was obsoleted in response to the decision to not have terms for individual enzyme activities unless those activities are commonly used for identification or classification. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T05:12:43Z [Term] id: OMP:0000304 name: increased substrate binding def: "A substrate binding phenotype where a protein has increased affinity for a substrate." [] comment: This term was obsoleted in response to the decision that Kd measurements are too granular a phenotype for OMP, at least at this time. The issue can be reconsidered if a need for such terms arises in the future. is_obsolete: true created_by: mchibucos creation_date: 2011-07-21T05:18:58Z [Term] id: OMP:0000306 name: macromolecular biosynthesis phenotype def: "A biosynthesis phenotype dealing with the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [GO:0009059, OMP:WAM] is_a: OMP:0000309 ! biosynthetic phenotype created_by: mchibucos creation_date: 2011-07-21T05:44:45Z [Term] id: OMP:0000307 name: DNA replication phenotype def: "A genetic material phenotype related to the process of DNA-dependent DNA replication that takes place as part of the cell cycle." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0044786 "cell cycle DNA replication" is_a: OMP:0000290 ! genetic material phenotype is_a: OMP:0000306 ! macromolecular biosynthesis phenotype is_a: OMP:0005115 ! cell cycle phenotype intersection_of: OMP:0005115 ! cell cycle phenotype intersection_of: inheres_in GO:0044786 ! cell cycle DNA replication relationship: inheres_in GO:0044786 ! cell cycle DNA replication created_by: mchibucos creation_date: 2011-07-21T05:45:47Z [Term] id: OMP:0000308 name: over-initiation of DNA replication def: "A DNA replication phenotype where the frequency of initiating new rounds of DNA replication is increased relative to a designated control." [OMP:WAM] is_a: OMP:0007147 ! altered DNA replication created_by: mchibucos creation_date: 2011-07-21T05:46:05Z [Term] id: OMP:0000309 name: biosynthetic phenotype def: "A metabolic phenotype dealing with the chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GO:0009058] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "Biosynthesis" EXACT [] is_a: OMP:0000180 ! metabolic phenotype created_by: mchibucos creation_date: 2011-07-21T05:47:06Z [Term] id: OMP:0000310 name: small molecule biosynthesis phenotype def: "A biosynthetic phenotype dealing with the chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule." [OMP:JCH] is_a: OMP:0000309 ! biosynthetic phenotype created_by: mchibucos creation_date: 2011-07-21T05:49:51Z [Term] id: OMP:0000311 name: amino acid biosynthesis phenotype def: "A small molecule biosynthesis phenotype dealing with the metabolic pathways that take precursor molecules and synthesize amino acids by remodeling the carbon skeleton and adding an amino group or sulfur." [OMP:JCH] is_a: OMP:0000310 ! small molecule biosynthesis phenotype created_by: mchibucos creation_date: 2011-07-21T05:50:25Z [Term] id: OMP:0000312 name: locomotion phenotype def: "A microbial phenotype where the trait in question is the self-propelled movement of a microbe from one location to another." [GO:0040011, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0040011 "locomotion" is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0040011 ! locomotion relationship: inheres_in GO:0040011 ! locomotion created_by: mchibucos creation_date: 2012-04-05T11:43:53Z [Term] id: OMP:0000321 name: macrolide resistance phenotype def: "An antimicrobial compound resistance phenotype related to resistance or sensitivity to compounds with a macrolide ring--a large lactone ring with multiple keto and hydroxyl groups--linked to one or more sugars which exhibit antimicrobial properties." [CHEBI:25106, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "amphotericin B resistance phenotype" NARROW [CHEBI:2682] synonym: "azithromycin resistance phenotype" NARROW [CHEBI:2955] synonym: "bacteriostatic" BROAD [] synonym: "bafilomycin A1 resistance phenotype" NARROW [CHEBI:22689] synonym: "brefeldin A resistance phenotype" NARROW [CHEBI:48080] synonym: "Carvomycin A resistance phenotype" NARROW [] synonym: "clarithromycin resistance phenotype" NARROW [CHEBi:3732] synonym: "dirithromycin resistance phenotype" NARROW [CHEBI:474014] synonym: "erythromycin resistance phenotype" NARROW [CHEBI:25105] synonym: "FK506" NARROW [] synonym: "josamycin resistance phenotype" NARROW [CHEBI:31739] synonym: "latrunculin B resistance phenotype" NARROW [CHEBI:49703] synonym: "macrolide sensitivity phenotype" RELATED [] synonym: "rapamycin resistance phenotype" RELATED [CHEBI:9168] synonym: "roxithromycin resistance phenotype" NARROW [CHEBI:48844] synonym: "spiramycin resistance phenotype" NARROW [] synonym: "telithromycin resistance phenotype" NARROW [] synonym: "troleandomycin resistance phenotype" NARROW [] xref: CHEBI:25105 "macrolide antibiotic" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: mchibucos creation_date: 2012-11-02T01:51:04Z [Term] id: OMP:0000331 name: aminopyrimidine resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to aminopyrimidine compounds." [CHEBI:38338, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "5-flucytosine resistance phenotype" NARROW [CHEBI:5100] synonym: "aminopyrimidine sensitivity phenotype" RELATED [] synonym: "antifolate resistance phenotype" BROAD [CHEBI:73913] synonym: "diaveridine resistance phenotype" NARROW [CHEBI:123115] synonym: "iclaprim resistance phenotype" NARROW [CHEBI:131724] synonym: "piritrexim resistance phenotype" NARROW [] synonym: "pyrimethamine resistance phenotype" NARROW [CHEBI:8673] synonym: "trimethoprim resistance phenotype" NARROW [CHEBI:45924] synonym: "trimetrexate resistance phenotype" NARROW [CID:5583] xref: CHEBI:38338 "aminopyrimidine" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: mchibucos creation_date: 2012-11-02T02:02:58Z [Term] id: OMP:0000334 name: increased resistance to aminopyrimidine def: "An aminopyrimidine resistance phenotype where resistance is increased relative to a designated control." [OMP:DAS] synonym: "decreased sensitivity to antifolates" RELATED [] is_a: OMP:0006018 ! altered aminopyrimidine resistance created_by: mchibucos creation_date: 2012-11-02T02:04:38Z [Term] id: OMP:0000335 name: decreased resistance to aminopyrimidine def: "An aminopyrimidine resistance phenotype where resistance is decreased relative to a designated control." [OMP:DAS] synonym: "increased sensitivity to aminopyrimidine" RELATED [] is_a: OMP:0006018 ! altered aminopyrimidine resistance created_by: mchibucos creation_date: 2012-11-02T02:04:58Z [Term] id: OMP:0000336 name: beta-lactam resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds that contain a beta-lactam ring in their molecular structure." [CHEBI:35627, OMP:MCC] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "amoxicillin resistance phenotype" NARROW [CHEBI:2676] synonym: "ampicillin resistance phenotype" NARROW [CHEBI:28971] synonym: "aztreonam resistance phenotype" NARROW [CHEBI:161680] synonym: "beta-lactam sensitivity phenotype" RELATED [] synonym: "carbapenams resistance phenotype" NARROW [CHEBI:64510] synonym: "carbenicillin resistance phenotype" NARROW [CHEBI:3393] synonym: "cefaclor resistance phenotype" NARROW [CHEBI:3478] synonym: "cefoxitin resistance phenotype" NARROW [CHEBI:209807] synonym: "cefsulodin resistance phenotype" NARROW [CHEBI:3507] synonym: "ceftazidime resistance phenotype" NARROW [CHEBI:3508] synonym: "cephalosporins resistance phenotype" NARROW [] synonym: "cephaloxporins resistance phenotype" NARROW [] synonym: "cephamycin resistance phenotype" NARROW [CHEBI:55429] synonym: "mecillinam resistance phenotype" RELATED [CHEBI:51208] synonym: "monobactams resistance phenotype" NARROW [CHEBI:50695] synonym: "oxacillin resistance phenotype" NARROW [CHEBI:7809] synonym: "penicillin resistance phenotype" NARROW [CHEBI:51356] xref: CHEBI:27933 "beta-lactam antibiotic" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: mchibucos creation_date: 2012-11-02T02:06:13Z [Term] id: OMP:0000435 name: resistant to aminopyrimidine def: "An aminopyrimidine resistance phenotype where an organism or cell is resistant to one or more aminopyrimidine compounds." [OMP:DAS] is_a: OMP:0000331 ! aminopyrimidine resistance phenotype created_by: mchibucos creation_date: 2012-11-04T02:52:01Z [Term] id: OMP:0000436 name: not resistant to aminopyrimidine def: "An aminopyrimidine resistance phenotype where an organism or cell is sensitive to one or more aminopyrimidine compounds." [OMP:DAS] synonym: "sensitivity to aminopyrimidine" RELATED [] is_a: OMP:0000331 ! aminopyrimidine resistance phenotype created_by: mchibucos creation_date: 2012-11-04T02:52:18Z [Term] id: OMP:0000437 name: resistant to ampicillin def: "An antimicrobial compound resistance phenotype where a cell or cells are resistant to ampicillin." [] comment: This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16. is_obsolete: true created_by: mchibucos creation_date: 2012-11-04T02:52:48Z [Term] id: OMP:0000445 name: resistant to penicillin def: "An antimicrobial compound resistance phenotype where a cell or cells are resistant to penicillin." [] comment: This term was obsoleted in response to our decision to not have precomposed terms for individual antimicrobial compounds. Instead, terms will be made for structural classes of antimicrobial compounds, for example 'resistant to beta-lactam', and the particular antimicrobial compound tested will be annotated by putting its CHEBI ID into column 16. is_obsolete: true created_by: mchibucos creation_date: 2012-11-04T02:55:41Z [Term] id: OMP:0000450 name: trace element utilization phenotype def: "A nutrient utilization phenotype that is related to utilization of chemical elements required by living organisms in minute amounts." [OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "micronutrient utilization" EXACT [] is_a: OMP:0006022 ! nutrient utilization phenotype created_by: mchibucos creation_date: 2013-05-23T01:35:26Z [Term] id: OMP:0000451 name: heme utilization phenotype def: "An iron source utilization phenotype where the trait is a compound of iron complexed in a porphyrin (tetrapyrrole) ring." [OMP:JCH] synonym: "haem" EXACT [] is_a: OMP:0007061 ! iron source utilization phenotype created_by: mchibucos creation_date: 2013-05-23T01:37:06Z [Term] id: OMP:0000452 name: increased heme utilization def: "An altered heme utilization phenotype where the ability to utilize heme is increased relative to a designated control." [OMP:JCH] is_a: OMP:0007088 ! altered heme utilization phenotype created_by: mchibucos creation_date: 2013-05-23T01:37:51Z [Term] id: OMP:0000453 name: decreased heme utilization def: "An altered heme utilization phenotype where the ability to utilize heme is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0007088 ! altered heme utilization phenotype created_by: mchibucos creation_date: 2013-05-23T01:39:39Z [Term] id: OMP:0000454 name: absence of heme utilization def: "A heme utilization phenotype where a cell or cells don't exhibit the ability to utilize heme as a source of iron." [OMP:JCH] is_a: OMP:0000451 ! heme utilization phenotype created_by: mchibucos creation_date: 2013-05-23T01:40:40Z [Term] id: OMP:0000455 name: alkaloid resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to compounds containing basic nitrogen in a heterocyclic structure." [CHEBI:22315, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "alkaloid sensitivity phenotype" RELATED [] xref: CHEBI:22315 "alkaloid" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: mchibucos creation_date: 2013-05-23T01:53:57Z [Term] id: OMP:0000456 name: caffeine resistance phenotype def: "An alkaloid resistance phenotype that is related to resistance or sensitivity to a trimethylxanthine in which the three methyl groups are located at positions 1, 3, and 7." [CHEBI:27732, OMP:WAM] synonym: "caffeine sensitivity phenotype" RELATED [] xref: CHEBI:27732 "caffeine" is_a: OMP:0000455 ! alkaloid resistance phenotype created_by: mchibucos creation_date: 2013-05-23T01:54:51Z [Term] id: OMP:0000457 name: resistant to caffeine def: "A caffeine resistance phenotype where an organism or cell is resistant to caffeine." [OMP:WAM] is_a: OMP:0000456 ! caffeine resistance phenotype created_by: mchibucos creation_date: 2013-05-23T01:55:13Z [Term] id: OMP:0000458 name: not resistant to caffeine def: "A caffeine resistance phenotype where an organism or cell is sensitive to caffeine." [OMP:WAM] synonym: "caffeine sensitivity" RELATED [] is_a: OMP:0000456 ! caffeine resistance phenotype created_by: mchibucos creation_date: 2013-05-23T01:55:34Z [Term] id: OMP:0000459 name: increased caffeine resistance def: "An altered caffeine resistance phenotype where resistance is increased relative to a designated control." [OMP:WAM] synonym: "decreased caffeine sensitivity" RELATED [] is_a: OMP:0005001 ! altered caffeine resistance created_by: mchibucos creation_date: 2013-05-23T01:58:11Z [Term] id: OMP:0000460 name: decreased caffeine resistance def: "An altered caffeine resistance phenotype where resistance is decreased relative to a designated control." [OMP:WAM] synonym: "increased caffeine sensitivity" RELATED [] is_a: OMP:0005001 ! altered caffeine resistance created_by: mchibucos creation_date: 2013-05-23T01:58:55Z [Term] id: OMP:0000461 name: outer membrane phenotype def: "A cell envelope phenotype where the trait in question is the presence or absence of a lipid bilayer membrane located outside the peptidoglycan cell wall." [ISBN:9780073402406, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000085 ! cell envelope morphology phenotype created_by: siegele creation_date: 2013-08-22T01:43:06Z [Term] id: OMP:0000462 name: presence of an outer membrane def: "An outer membrane phenotype where a cell or cells possess an outer membrane." [OMP:DAS] synonym: "Diderm" NARROW [] synonym: "Gram negative" NARROW [] synonym: "mycolate outer membrane" RELATED [] is_a: OMP:0000461 ! outer membrane phenotype created_by: siegele creation_date: 2013-08-22T01:47:25Z [Term] id: OMP:0000463 name: increased number of pili def: "A pilus phenotype where there is an increased number of pili per cell relative to a designated control." [OMP:DAS] is_a: OMP:0006010 ! altered pilus phenotype created_by: siegele creation_date: 2013-08-22T01:48:57Z [Term] id: OMP:0000464 name: absence of an outer membrane def: "An outer membrane phenotype where a cell or cells lack an outer membrane." [OMP:DAS] is_a: OMP:0000461 ! outer membrane phenotype created_by: siegele creation_date: 2013-08-22T01:53:29Z [Term] id: OMP:0000500 name: decreased aerotaxis def: "An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007076 ! altered aerotaxis intersection_of: OMP:0007076 ! altered aerotaxis intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: mchibucos creation_date: 2012-11-02T01:20:31Z [Term] id: OMP:0000502 name: increased aerotaxis def: "An altered aerotaxis phenotype where the frequency, rate, timing, or extent of aerotaxis is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007076 ! altered aerotaxis created_by: mchibucos creation_date: 2012-11-02T01:21:21Z [Term] id: OMP:0000503 name: decreased chemotaxis def: "An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007077 ! altered chemotaxis created_by: mchibucos creation_date: 2012-11-02T01:22:28Z [Term] id: OMP:0000505 name: increased chemotaxis def: "An altered chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007077 ! altered chemotaxis created_by: mchibucos creation_date: 2012-11-02T01:23:12Z [Term] id: OMP:0001001 name: Increased negative supercoiling def: "An altered DNA supercoiling phenotype where negative supercoiling is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006126 ! altered DNA supercoiling created_by: wmeza creation_date: 2013-08-22T05:57:07Z [Term] id: OMP:0001002 name: decreased negative supercoiling def: "An altered DNA supercoiling phenotype where negative supercoiling is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006126 ! altered DNA supercoiling created_by: wmeza creation_date: 2013-08-22T05:57:56Z [Term] id: OMP:0005000 name: phospholipase activity phenotype def: "An enzymatic activity phenotype that alters phospholipase activity. Phospholipases are a family of enzymes that catalyze the hydrolysis of a glycerophospholipid." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0004620 "phospholipase activity" is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-01-26T15:01:05Z [Term] id: OMP:0005001 name: altered caffeine resistance def: "A caffeine resistance phenotype that is altered relative to a designated control." [OMP:WAM] is_a: OMP:0000456 ! caffeine resistance phenotype is_a: OMP:0007137 ! altered alkaloid resistance created_by: wmeza creation_date: 2014-07-23T12:18:08Z [Term] id: OMP:0005002 name: temperature growth range phenotype def: "A growth phenotype where the trait in question is the range of temperatures where growth of the microbe can occur." [OMP:WAM] synonym: "temperature requirement for growth" NARROW [] is_a: OMP:0007192 ! growth range phenotype created_by: wmeza creation_date: 2013-09-03T01:06:05Z [Term] id: OMP:0005003 name: hyperthermophilic growth def: "A temperature growth range phenotype where optimal growth occurs between 85 C and 113 C." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005002 ! temperature growth range phenotype created_by: wmeza creation_date: 2013-09-03T01:29:51Z [Term] id: OMP:0005004 name: thermophilic growth def: "A temperature growth range phenotype where growth can occur at 55 C or higher and optimal growth occurs between 55 C and 65 C." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005002 ! temperature growth range phenotype created_by: wmeza creation_date: 2013-09-03T01:36:26Z [Term] id: OMP:0005005 name: mesophilic growth def: "A temperature growth range phenotype where optimal growth occurs between 20 C and 45 C." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005002 ! temperature growth range phenotype created_by: wmeza creation_date: 2013-09-04T13:24:06Z [Term] id: OMP:0005006 name: psychrotrophic growth def: "A temperature growth range phenotype where growth of the occurs from 0 to 7 degrees C with optimum growth at 20 to 30 degrees C. The maximum temperature of growth is around 35 degrees C." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005002 ! temperature growth range phenotype created_by: wmeza creation_date: 2013-09-04T13:38:56Z [Term] id: OMP:0005007 name: psychrophilic growth def: "A temperature growth range phenotype where growth can occur at 0 degrees C and optimal growth occurs at temperatures of 15 degrees C or lower." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005002 ! temperature growth range phenotype created_by: wmeza creation_date: 2013-09-04T13:40:27Z [Term] id: OMP:0005008 name: pH growth range phenotype def: "A growth range phenotype related to the pH range that allows growth of a cell or organism." [OMP:WAM] is_a: OMP:0007192 ! growth range phenotype created_by: wmeza creation_date: 2013-09-04T13:57:28Z [Term] id: OMP:0005009 name: acidophile def: "A pH growth range phenotype where optimum growth occurs between pH 0 and 5.5." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005008 ! pH growth range phenotype created_by: wmeza creation_date: 2013-09-04T16:18:28Z [Term] id: OMP:0005010 name: neutrophile def: "A pH growth range phenotype where optimum growth occurs between pH 5.5 and 8.0." [ISBN:780073402406, OMP:WAM] is_a: OMP:0005008 ! pH growth range phenotype created_by: wmeza creation_date: 2013-09-04T16:21:50Z [Term] id: OMP:0005011 name: alkaliphile def: "A pH growth range phenotype where optimum growth of occurs between pH 8.0 to 11.5." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005008 ! pH growth range phenotype created_by: wmeza creation_date: 2013-09-04T16:24:24Z [Term] id: OMP:0005012 name: pressure growth range phenotype def: "A growth range phenotype dealing with the pressure requirements for growth of an organism or cell." [OMP:WAM] is_a: OMP:0007192 ! growth range phenotype created_by: wmeza creation_date: 2013-09-09T11:42:28Z [Term] id: OMP:0005013 name: solute and water activity growth range phenotype def: "A growth range phenotype dealing with the range of solute concentrations (water activity) that permit growth and proliferation of a microbe." [OMP:WAM] is_a: OMP:0007192 ! growth range phenotype created_by: wmeza creation_date: 2013-09-09T11:43:45Z [Term] id: OMP:0005014 name: piezophilic growth def: "A pressure growth range phenotype where growth is more rapid at high hydrostatic pressure." [ISBN:9780073402406, OMP:WAM] synonym: "barophilic growth" RELATED [ISBN:9780073402406] is_a: OMP:0005012 ! pressure growth range phenotype created_by: wmeza creation_date: 2013-09-09T11:49:53Z [Term] id: OMP:0005015 name: osmotolerant growth def: "A solute and water activity phenotype where growth and proliferation can occur over wide ranges of water activity or osmotic concentration." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005013 ! solute and water activity growth range phenotype created_by: wmeza creation_date: 2013-09-09T13:05:24Z [Term] id: OMP:0005016 name: halophilic growth def: "A solute and water activity phenotype where growth and proliferation requires high levels of sodium chloride, usually above or about 0.2 M." [ISBN:9780073402406, OMP:WAM] is_a: OMP:0005013 ! solute and water activity growth range phenotype created_by: wmeza creation_date: 2013-09-09T13:06:03Z [Term] id: OMP:0005017 name: SOS response phenotype def: "A gene expression phenotype related to the expression of a gene or genes that are part of the SOS response. Expression of the SOS response is induced by DNA damage." [ISBN:9781615831838, OMP:WAM] synonym: "DNA damage response" RELATED [] is_a: OMP:0000253 ! gene expression phenotype created_by: wmeza creation_date: 2013-09-18T18:35:30Z [Term] id: OMP:0005018 name: altered SOS response phenotype def: "An SOS response phenotype where expression of one or more genes in the SOS response is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005017 ! SOS response phenotype created_by: wmeza creation_date: 2013-09-19T13:39:34Z [Term] id: OMP:0005019 name: absence of phospholipase activity def: "A phospholipase activity phenotype where an organism doesn't exhibit phospholipase activity." [OMP:JG] is_a: OMP:0005000 ! phospholipase activity phenotype created_by: Jesus creation_date: 2016-01-26T15:16:42Z [Term] id: OMP:0005020 name: increased basal expression of the SOS response def: "An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is increased relative to a designated control." [OMP:WAM] is_a: OMP:0005054 ! altered basal expression of the SOS response created_by: wmeza creation_date: 2013-09-19T15:54:21Z [Term] id: OMP:0005021 name: decreased basal expression of the SOS response def: "An altered basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0005054 ! altered basal expression of the SOS response created_by: wmeza creation_date: 2013-09-19T15:55:16Z [Term] id: OMP:0005022 name: absence of an SOS response def: "An SOS response phenotype where a cell or cells lack an SOS response." [OMP:WAM] is_a: OMP:0005017 ! SOS response phenotype created_by: wmeza creation_date: 2013-09-19T16:25:09Z [Term] id: OMP:0005023 name: presence of an SOS response def: "An SOS response phenotype where a cell or cells exhibit an SOS response." [OMP:WAM] is_a: OMP:0005017 ! SOS response phenotype created_by: wmeza creation_date: 2013-09-19T16:25:30Z [Term] id: OMP:0005024 name: increased induced expression of the SOS response def: "An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is increased relative to a designated control." [OMP:WAM] is_a: OMP:0005053 ! altered induced expression of the SOS response created_by: wmeza creation_date: 2013-09-20T13:01:05Z [Term] id: OMP:0005025 name: decreased induced expression of the SOS response def: "An altered induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0005053 ! altered induced expression of the SOS response created_by: wmeza creation_date: 2013-09-20T13:26:46Z [Term] id: OMP:0005026 name: presence of phospholipase activity def: "A phospholipase activity phenotype where an organism exhibits phospholipase activity." [OMP:JG] is_a: OMP:0005000 ! phospholipase activity phenotype created_by: Jesus creation_date: 2016-01-26T15:17:15Z [Term] id: OMP:0005027 name: stress-induced mutagenesis phenotype def: "A genetic material phenotype that refers to the process(es) that give rise to mutations that occur after imposition of a non-lethal stress." [OMP:WAM, PMID:17917874, PMID:3045565] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000290 ! genetic material phenotype created_by: wmeza creation_date: 2013-09-20T15:00:09Z [Term] id: OMP:0005028 name: altered phospholipase activity def: "A phospholipase activity phenotype where phospholipase activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005000 ! phospholipase activity phenotype is_a: OMP:0005130 ! altered enzymatic activity created_by: Jesus creation_date: 2016-01-26T15:17:51Z [Term] id: OMP:0005029 name: altered tetracycline resistance def: "A tetracycline resistance phenotype where resistance to a tetracycline compound is altered relative to a designated control." [OMP:WAM] is_a: OMP:0006062 ! tetracycline resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: wmeza creation_date: 2014-07-23T17:05:20Z [Term] id: OMP:0005030 name: increased stress-induced mutagenesis def: "An altered stress-induced mutagenesis phenotype where mutagenesis is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006034 ! altered stress-induced mutagenesis created_by: wmeza creation_date: 2013-09-25T15:57:03Z [Term] id: OMP:0005031 name: decreased stress-induced mutagenesis def: "An altered stress-induced mutagenesis phenotype where the frequency of mutagenesis is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006034 ! altered stress-induced mutagenesis created_by: wmeza creation_date: 2013-09-25T15:57:46Z [Term] id: OMP:0005032 name: presence of stress-induced mutagenesis def: "A stress-induced mutagenesis phenotype where a cell or cells exhibit stress-induced mutagenesis." [OMP:WAM] is_a: OMP:0005027 ! stress-induced mutagenesis phenotype created_by: wmeza creation_date: 2013-09-25T15:59:12Z [Term] id: OMP:0005033 name: absence of stress-induced mutagenesis def: "A stress-induced mutagenesis phenotype where a cell or cells don't exhibit stress-induced mutagenesis." [OMP:WAM] is_a: OMP:0005027 ! stress-induced mutagenesis phenotype created_by: wmeza creation_date: 2013-09-25T18:20:22Z [Term] id: OMP:0005034 name: altered quinolone resistance def: "A quinolone resistance phenotype where resistance to a quinolone compound is altered relative to a designated control." [OMP:WAM] is_a: OMP:0006029 ! quinolone resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: wmeza creation_date: 2014-07-23T17:13:45Z [Term] id: OMP:0005035 name: quick-stop DNA replication def: "A conditional DNA replication phenotype where incorporation of dNTPs into DNA ceases at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition." [OMP:JHU, OMP:WAM] is_a: OMP:0007147 ! altered DNA replication created_by: wmeza creation_date: 2013-10-15T17:51:12Z [Term] id: OMP:0005036 name: slow-stop DNA replication def: "A conditional DNA replication phenotype where incorporation of dNTPs into DNA does not stop at the same rate as inactivation or depletion of a required gene product upon shift to a restrictive condition. Incorporation of dNTPs stops only after completion of any rounds of replication that had initiated prior to the shift." [OMP:JHU, OMP:WAM] is_a: OMP:0007147 ! altered DNA replication created_by: wmeza creation_date: 2013-10-15T17:51:40Z [Term] id: OMP:0005037 name: origin-independent replication def: "A DNA replication phenotype in which replication of the chromosome(s) is independent of the origin of replication." [OMP:WAM] is_a: OMP:0007147 ! altered DNA replication created_by: wmeza creation_date: 2013-10-15T18:53:12Z [Term] id: OMP:0005038 name: response to oxidative stress phenotype def: "A stress response phenotype dealing with a xxxx." [ISBN:9780198529170, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-10-15T18:59:38Z [Term] id: OMP:0005039 name: response to freeze/thawing stress phenotype def: "A stress response phenotype dealing with the response to cyclic freezing and melting." [ISBN:1555810489, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-10-15T18:59:52Z [Term] id: OMP:0005040 name: response to acid pH stress phenotype def: "A stress response phenotype dealing with the response to the environmental stress of pH at or below 6.5." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-10-16T17:14:52Z [Term] id: OMP:0005041 name: response to alkaline pH stress phenotype def: "A response to stress phenotype dealing with the response to an environment with a pH at or above 7.5." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-10-16T17:15:59Z [Term] id: OMP:0005042 name: homologous recombination phenotype def: "A genetic material phenotype dealing with the process that occurs when two segments of DNA with identical or very similar sequences pair up and exchange or replace some portion of their DNA." [ISBN:9780471768654, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000290 ! genetic material phenotype created_by: wmeza creation_date: 2013-10-18T18:34:37Z [Term] id: OMP:0005043 name: site-specific recombination phenotype def: "A genetic material phenotype where there is non-homologous recombination at a particular sequence of DNA." [ISBN:9780471768654, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000290 ! genetic material phenotype created_by: wmeza creation_date: 2013-10-18T18:34:58Z [Term] id: OMP:0005044 name: altered mitotic recombination def: "A mitotic recombination phenotype term where the frequency, rate, timing, or extent of mitotic recombination is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005045 ! mitotic recombination phenotype created_by: wmeza creation_date: 2014-07-24T13:27:41Z [Term] id: OMP:0005045 name: mitotic recombination phenotype def: "A genetic material phenotype dealing with the exchange, reciprocal or nonreciprocal of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles." [ISBN:9780198529170, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000290 ! genetic material phenotype created_by: wmeza creation_date: 2013-10-18T18:38:05Z [Term] id: OMP:0005046 name: gene silencing phenotype def: "A genetic material phenotype dealing with the transcriptional or post-transcriptional processes carried out at the cellular level that results in long-term gene inactivation." [GO:0016458, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0016458 "gene silencing" is_a: OMP:0000290 ! genetic material phenotype is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0016458 ! gene silencing relationship: inheres_in GO:0016458 ! gene silencing created_by: wmeza creation_date: 2013-10-18T18:38:43Z [Term] id: OMP:0005047 name: chromosome segregation phenotype def: "A genetic material phenotype concerning the process in which replicated chromosome(s) are physically separated and apportioned as a set to daughter cells." [GO:0007059, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:\:0007059 "chromosome segregation" is_a: OMP:0000290 ! genetic material phenotype is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0007059 ! chromosome segregation relationship: inheres_in GO:0007059 ! chromosome segregation created_by: wmeza creation_date: 2013-10-18T18:39:04Z [Term] id: OMP:0005048 name: mutation frequency phenotype def: "A genetic material phenotype dealing with the frequency of mutations." [ISBN:9780198529170, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000290 ! genetic material phenotype created_by: wmeza creation_date: 2013-10-18T18:39:27Z [Term] id: OMP:0005049 name: increased frequency of homologous recombination def: "A homologous recombination phenotype where the prevalence of homologous recombination is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006002 ! altered homologous recombination created_by: wmeza creation_date: 2013-10-23T19:46:15Z [Term] id: OMP:0005050 name: decreased frequency of homologous recombination def: "A homologous recombination phenotype where homologous recombination is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006002 ! altered homologous recombination created_by: wmeza creation_date: 2013-10-24T12:52:41Z [Term] id: OMP:0005051 name: presence of homologous recombination def: "A homologous recombination phenotype a cell or cells have the ability to perform homologous recombination." [OMP:WAM] is_a: OMP:0005042 ! homologous recombination phenotype created_by: wmeza creation_date: 2013-10-25T12:21:41Z [Term] id: OMP:0005052 name: absence of homologous recombination def: "A homologous recombination phenotype a cell or cells lack the ability to perform homologous recombination." [OMP:WAM] is_a: OMP:0005042 ! homologous recombination phenotype created_by: wmeza creation_date: 2013-10-25T12:22:04Z [Term] id: OMP:0005053 name: altered induced expression of the SOS response def: "An altered SOS response phenotype where induced expression of one or more genes in the SOS response is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005018 ! altered SOS response phenotype created_by: wmeza creation_date: 2014-07-30T12:34:21Z [Term] id: OMP:0005054 name: altered basal expression of the SOS response def: "An altered SOS response phenotype where basal or uninduced expression of one or more genes in the SOS response is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005018 ! altered SOS response phenotype created_by: wmeza creation_date: 2014-07-30T12:58:59Z [Term] id: OMP:0005055 name: increased frequency of site-specific recombination def: "A site specific recombination phenotype where the prevalence of site specific recombination is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006005 ! altered site-specific recombination created_by: wmeza creation_date: 2013-10-29T13:14:25Z [Term] id: OMP:0005056 name: decreased frequency of site-specific recombination def: "A site specific recombination phenotype where site specific recombination is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006005 ! altered site-specific recombination created_by: wmeza creation_date: 2013-10-29T13:15:06Z [Term] id: OMP:0005057 name: absence of site-specific recombination def: "A site-specific recombination phenotype where a cell or cells lack the ability to perform site-specific recombination." [OMP:WAM] is_a: OMP:0005043 ! site-specific recombination phenotype created_by: wmeza creation_date: 2013-10-29T13:15:28Z [Term] id: OMP:0005058 name: presence of site-specific recombination def: "A site-specific recombination phenotype where a cell or cells have the ability to perform site-specific recombination." [OMP:WAM] is_a: OMP:0005043 ! site-specific recombination phenotype created_by: wmeza creation_date: 2013-10-29T13:20:16Z [Term] id: OMP:0005059 name: transposable element transposition phenotype def: "A genetic material phenotype dealing with DNA sequences that change positions within the genome." [ISBN:9780198529170, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "" RELATED [] xref: APO:0000047 "transposable element transposition" xref: GO:0032196 "transposition" is_a: OMP:0000290 ! genetic material phenotype is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0032196 ! transposition relationship: inheres_in GO:0032196 ! transposition created_by: wmeza creation_date: 2013-10-30T18:35:34Z [Term] id: OMP:0005060 name: decreased frequency of chromosome missegregation def: "An altered chromosome segregation phenotype where the frequency of chromosome missegregation is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006001 ! altered chromosome segregation created_by: wmeza creation_date: 2013-11-04T18:09:09Z [Term] id: OMP:0005061 name: increased frequency of chromosome missegregation def: "An altered chromosome segregation phenotype where the frequency of chromosome missegregation is increased relative to a designated control." [OMP:WAM] synonym: "increased aneuploidy" NARROW [] is_a: OMP:0006001 ! altered chromosome segregation created_by: wmeza creation_date: 2013-11-04T18:09:38Z [Term] id: OMP:0005062 name: increased phospholipase activity def: "An altered phospholipase activity phenotype where phospholipase activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005028 ! altered phospholipase activity intersection_of: OMP:0005028 ! altered phospholipase activity intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: Jesus creation_date: 2016-01-26T15:18:34Z [Term] id: OMP:0005063 name: decreased phospholipase activity def: "An altered phospholipase activity phenotype where phospholipase activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005028 ! altered phospholipase activity intersection_of: OMP:0005028 ! altered phospholipase activity intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: Jesus creation_date: 2016-01-26T15:19:23Z [Term] id: OMP:0005064 name: increased frequency of gene silencing def: "An altered gene silencing phenotype where the incidence of gene silencing is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006003 ! altered gene silencing created_by: wmeza creation_date: 2013-11-04T18:21:37Z [Term] id: OMP:0005065 name: decreased frequency of gene silencing def: "An gene silencing phenotype where gene silencing is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006003 ! altered gene silencing created_by: wmeza creation_date: 2013-11-04T18:21:56Z [Term] id: OMP:0005066 name: absence of gene silencing def: "A gene silencing phenotype where a cell or cells doesn't exhibit the ability to perform gene silencing." [OMP:WAM] is_a: OMP:0005046 ! gene silencing phenotype created_by: wmeza creation_date: 2013-11-04T18:33:14Z [Term] id: OMP:0005067 name: presence of gene silencing def: "A gene silencing phenotype where a cell or cells exhibit the ability to perform gene silencing." [OMP:WAM] is_a: OMP:0005046 ! gene silencing phenotype created_by: wmeza creation_date: 2013-11-04T18:34:20Z [Term] id: OMP:0005068 name: increased mutation frequency def: "An altered mutation frequency phenotype where the mutation frequency is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006071 ! altered mutation frequency created_by: wmeza creation_date: 2013-11-08T17:05:44Z [Term] id: OMP:0005069 name: decreased mutation frequency def: "An altered mutation frequency phenotype where the mutation frequency is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006071 ! altered mutation frequency created_by: wmeza creation_date: 2013-11-08T17:11:14Z [Term] id: OMP:0005070 name: increased mitotic recombination def: "An altered mitotic recombination phenotype where the mitotic recombination is increased relative to a designated control." [OMP:WAM] is_a: OMP:0005044 ! altered mitotic recombination created_by: wmeza creation_date: 2013-11-08T17:11:59Z [Term] id: OMP:0005071 name: decreased mitotic recombination def: "An altered mitotic recombination phenotype where mitotic recombination is decreased relative to the designated control." [OMP:WAM] is_a: OMP:0005044 ! altered mitotic recombination created_by: wmeza creation_date: 2013-11-08T17:12:27Z [Term] id: OMP:0005072 name: absence of mitotic recombination def: "A mitotic recombination phenotype where a cell or cells lack the ability to perform mitotic recombination." [OMP:WAM] is_a: OMP:0005045 ! mitotic recombination phenotype created_by: wmeza creation_date: 2013-11-08T17:35:56Z [Term] id: OMP:0005073 name: presence of mitotic recombination def: "A mitotic recombination phenotype where a cell or cells have the ability to perform mitotic recombination." [OMP:WAM] is_a: OMP:0005045 ! mitotic recombination phenotype created_by: wmeza creation_date: 2013-11-08T17:36:20Z [Term] id: OMP:0005074 name: increased rate of transposable element transposition def: "A transposable element transposition phenotype where DNA sequences change position at a higher frequency relative to a designated control." [OMP:WAM] is_a: OMP:0006013 ! altered transposable element transposition phenotype created_by: wmeza creation_date: 2013-11-11T13:41:50Z [Term] id: OMP:0005075 name: decreased rate of transposable element transposition def: "A transposable element transposition phenotype where DNA sequences change position at a lower frequency relative to the designated control." [OMP:WAM] is_a: OMP:0006013 ! altered transposable element transposition phenotype created_by: wmeza creation_date: 2013-11-11T13:42:44Z [Term] id: OMP:0005076 name: increased resistance to acidic pH stress def: "An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is increased relative to a designated control." [OMP:WAM] synonym: "decreased acidic pH sensitivity" RELATED [OMP:WAM] is_a: OMP:0005118 ! altered resistance to acidic pH stress phenotype created_by: wmeza creation_date: 2013-11-15T18:09:55Z [Term] id: OMP:0005077 name: decreased resistance to acidic pH stress def: "An altered acidic pH stress phenotype were resistance of microbes in a population to acidic pH is decreased relative to a designated control." [OMP:WAM] synonym: "increased sensitivity to acid pH stress" RELATED [OMP:WAM] is_a: OMP:0005118 ! altered resistance to acidic pH stress phenotype created_by: wmeza creation_date: 2013-11-15T18:12:48Z [Term] id: OMP:0005078 name: increased resistance to alkaline pH stress def: "An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is increased relative to a designated control." [OMP:WAM] synonym: "decreased alkaline pH sensitivity" RELATED [OMP:WAM] is_a: OMP:0005119 ! altered resistance to alkaline pH stress phenotype created_by: wmeza creation_date: 2013-11-15T18:14:08Z [Term] id: OMP:0005079 name: decreased resistance to alkaline pH stress def: "An altered resistance to alkaline pH stress phenotype where resistance of microbes in a population to alkaline pH is decreased relative to a designated control." [OMP:WAM] synonym: "increased alkaline pH sensitivity" NARROW [OMP:WAM] is_a: OMP:0005119 ! altered resistance to alkaline pH stress phenotype created_by: wmeza creation_date: 2013-11-15T18:16:03Z [Term] id: OMP:0005080 name: response to dessication stress phenotype def: "A stress response phenotype dealing with the removal or immobilisation of water." [ISBN:9780471138228, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-11-18T11:42:37Z [Term] id: OMP:0005081 name: response to radiation stress phenotype def: "A stress response phenotype related to resistance or sensitivity to energy in the form of electromagnetic waves at various wavelengths." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "radiation resistance" RELATED [] is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-11-18T11:50:57Z [Term] id: OMP:0005082 name: response to thermotolerance stress phenotype def: "A stress response phenotype dealing with the resistance response to normally lethal high temperature levels." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2013-11-18T12:22:55Z [Term] id: OMP:0005083 name: response to ionizing radiation phenotype def: "A response to radiation stress phenotype dealing with short wavelength, highly energetic radiation." [ISBN:9780471387350, OMP:WAM] is_a: OMP:0005081 ! response to radiation stress phenotype created_by: wmeza creation_date: 2013-11-22T15:55:45Z [Term] id: OMP:0005084 name: resistance to UV radiation phenotype def: "A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to UV radiation (typically, irradiation by wavelengths 100-400 nm)." [ISO:21348, OMP:WAM] is_a: OMP:0007576 ! resistance to radiation stress phenotype created_by: wmeza creation_date: 2013-11-22T15:56:27Z [Term] id: OMP:0005085 name: resistance to gamma-ray radiation phenotype def: "A radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation." [OMP:WAM] is_a: OMP:0007576 ! resistance to radiation stress phenotype created_by: wmeza creation_date: 2013-11-22T16:04:42Z [Term] id: OMP:0005086 name: resistance to x-ray radiation def: "A resistance to radiation stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to x-rays." [OMP:WAM] is_a: OMP:0007576 ! resistance to radiation stress phenotype created_by: wmeza creation_date: 2013-11-22T16:05:02Z [Term] id: OMP:0005087 name: increased resistance to dessication stress def: "An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is increased relative to a designated control." [OMP:WAM] synonym: "decreased dessication sensitivity" RELATED [OMP:WAM] is_a: OMP:0005120 ! altered resistance to dessication stress phenotype created_by: wmeza creation_date: 2013-12-06T14:14:31Z [Term] id: OMP:0005088 name: decreased resistance to dessication stress def: "An altered dessication stress phenotype where resistance of microbes in a population to dessication stress is decreased relative to a designated control." [OMP:WAM] synonym: "increased dessication sensitivity " RELATED [OMP:WAM] is_a: OMP:0005120 ! altered resistance to dessication stress phenotype created_by: wmeza creation_date: 2013-12-06T14:15:06Z [Term] id: OMP:0005089 name: increased resistance to freeze/thawing stress def: "An altered freeze/thawing stress phenotype where resistance is increased relative to a designated control." [OMP:WAM] is_a: OMP:0005121 ! altered resistance to freeze/thaw stress created_by: wmeza creation_date: 2013-12-06T14:28:16Z [Term] id: OMP:0005090 name: decreased resistance to freeze/thawing stress def: "An altered freeze/thawing stress phenotype where resistance is decreased relative to a designated control." [OMP:WAM] synonym: "decreased freeze/thaw sensitivity. " RELATED [OMP:WAM] is_a: OMP:0005121 ! altered resistance to freeze/thaw stress created_by: wmeza creation_date: 2013-12-06T14:28:46Z [Term] id: OMP:0005091 name: increased resistance to oxidative stress def: "An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is increased relative to a designated control." [OMP:WAM] synonym: "decreased sensitivity to oxidative stress" EXACT [OMP:WAM] is_a: OMP:0005122 ! altered resistance to oxidative stress created_by: wmeza creation_date: 2013-12-06T17:57:46Z [Term] id: OMP:0005092 name: decreased resistance to oxidative stress def: "An altered oxidative stress phenotype where resistance of microbes in a population to an oxidative stress is decreased relative to a designated control." [OMP:WAM] synonym: "increased sensitivity to oxidative stress" EXACT [OMP:WAM] is_a: OMP:0005122 ! altered resistance to oxidative stress created_by: wmeza creation_date: 2013-12-06T17:59:14Z [Term] id: OMP:0005093 name: increased resistance to gamma-ray radiation def: "An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is increased relative to a designated control." [OMP:WAM] synonym: "decreased gamma ray sensitivity" NARROW [OMP:WAM] is_a: OMP:0005123 ! altered resistance to gamma-ray radiation created_by: wmeza creation_date: 2013-12-17T13:05:40Z [Term] id: OMP:0005094 name: decreased resistance to gamma-ray radiation def: "An altered resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-rays is decreased relative to a designated control." [OMP:WAM] synonym: "increased gamma ray sensitivity" NARROW [OMP:WAM] is_a: OMP:0005123 ! altered resistance to gamma-ray radiation created_by: wmeza creation_date: 2013-12-17T13:06:05Z [Term] id: OMP:0005095 name: increased resistance to x-ray radiation def: "An altered x-ray radiation phenotype were resistance is increased relative to a designated control." [OMP:WAM] synonym: "decreased x-ray sensitivity" NARROW [OMP:WAM] is_a: OMP:0005124 ! altered resistance to x-ray radiation created_by: wmeza creation_date: 2013-12-17T13:26:43Z [Term] id: OMP:0005096 name: decreased resistance to x-ray radiation def: "An altered x-ray radiation phenotype where resistance is decreased relative to a designated control." [OMP:WAM] synonym: "increased x-ray sensitivity " NARROW [OMP:WAM] is_a: OMP:0005124 ! altered resistance to x-ray radiation created_by: wmeza creation_date: 2013-12-17T13:28:20Z [Term] id: OMP:0005097 name: increased resistance to UV radiation def: "An altered UV-radiation resistance phenotype where the resistance of microbes in a population to UV radiation is increased relative to a designated control." [OMP:WAM] synonym: "decreased UV sensitivity " RELATED [OMP:WAM] is_a: OMP:0005125 ! altered UV-radiation resistance intersection_of: OMP:0005125 ! altered UV-radiation resistance intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: wmeza creation_date: 2013-12-17T13:41:53Z [Term] id: OMP:0005098 name: decreased resistance to UV radiation def: "An altered UV radiation resistance phenotype where the resistance of microbes in a population to UV radiation is decreased relative to a designated control." [OMP:WAM] synonym: "increased UV sensitivity " RELATED [OMP:WAM] is_a: OMP:0005125 ! altered UV-radiation resistance intersection_of: OMP:0005125 ! altered UV-radiation resistance intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: wmeza creation_date: 2013-12-17T13:43:32Z [Term] id: OMP:0005099 name: response to starvation stress phenotype def: "A stress response phenotype dealing with the response to deprivation of nourishment." [GO:0009267, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2014-01-21T12:13:04Z [Term] id: OMP:0005100 name: macrolide dependent growth def: "A growth phenotype where growth is dependent on the presence of a macrolide." [OMP:WAM] synonym: "erythromycin dependent growth" NARROW [] is_a: OMP:0007264 ! drug-dependent population growth phenotype created_by: wmeza creation_date: 2014-02-11T11:53:51Z [Term] id: OMP:0005101 name: aminoglycoside dependent growth def: "A growth phenotype where growth is dependent on the presence of an aminoglycoside." [OMP:WAM] synonym: "streptomycin dependent growth" NARROW [] is_a: OMP:0007264 ! drug-dependent population growth phenotype created_by: wmeza creation_date: 2014-02-11T11:54:51Z [Term] id: OMP:0005102 name: increased enzymatic activity def: "An altered enzymatic activity phenotype where a specified enzymatic activity is increased relative to a designated control." [OMP:WAM] is_a: OMP:0005130 ! altered enzymatic activity created_by: wmeza creation_date: 2014-04-17T10:54:45Z [Term] id: OMP:0005103 name: decreased catalytic activity def: "An altered enzymatic activity phenotype where a specified enzymatic activity is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0005130 ! altered enzymatic activity created_by: wmeza creation_date: 2014-04-17T10:55:05Z [Term] id: OMP:0005104 name: abolished resistance to dessication stress def: "A decreased resistance to dessication stress phenotype where the resistance of microbes in a population to dessication stress is abolished." [OMP:WAM] is_a: OMP:0005088 ! decreased resistance to dessication stress created_by: wmeza creation_date: 2014-07-17T13:11:33Z [Term] id: OMP:0005105 name: abolished resistance to freeze/thawing stress def: "A decreased resistance to freeze/thawing stress phenotype where resistance to freeze/thawing is abolished." [OMP:WAM] is_a: OMP:0005090 ! decreased resistance to freeze/thawing stress created_by: wmeza creation_date: 2014-07-17T14:10:28Z [Term] id: OMP:0005106 name: increased lifespan def: "A lifespan phenotype where lifespan is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006033 ! altered lifespan phenotype created_by: wmeza creation_date: 2014-05-07T12:39:57Z [Term] id: OMP:0005107 name: decreased lifespan def: "An altered lifespan phenotype where the lifespan is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006033 ! altered lifespan phenotype created_by: wmeza creation_date: 2014-05-07T12:40:14Z [Term] id: OMP:0005108 name: increased cell diameter def: "An altered cell size phenotype where the diameter of a spherical microbial cell or cells is increased relative to a designated control." [OMP:WAM] is_a: OMP:0000041 ! increased cell size created_by: wmeza creation_date: 2014-07-02T18:39:12Z [Term] id: OMP:0005109 name: decreased cell diameter def: "An altered cell size phenotype where the diameter of a spherical microbial cell or cells is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0000040 ! decreased cell size created_by: wmeza creation_date: 2014-07-02T18:46:00Z [Term] id: OMP:0005110 name: abolished phospholipase activity def: "A decreased phospholipase activity phenotype where phospholipase activity is abolished." [OMP:JG] is_a: OMP:0005019 ! absence of phospholipase activity is_a: OMP:0005063 ! decreased phospholipase activity created_by: Jesus creation_date: 2016-01-26T15:19:53Z [Term] id: OMP:0005111 name: resistance to killing by host phenotype def: "A microbe-host interaction phenotype relating to the resistance or sensitivity of a microbe to killing by a host." [OMP:JG] xref: APO:0000324 "resistance to killing by host cells" is_a: OMP:0000197 ! microbe-host interaction phenotype created_by: Jesus creation_date: 2016-02-02T13:52:43Z [Term] id: OMP:0005112 name: response to SDS-EDTA stress phenotype def: "A stress response phenotype dealing with the response to exposure to SDS-EDTA." [OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype created_by: wmeza creation_date: 2014-07-07T13:21:43Z [Term] id: OMP:0005113 name: decreased resistance to SDS-EDTA stress def: "An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0005126 ! altered resistance to SDS-EDTA stress created_by: wmeza creation_date: 2014-07-07T13:50:24Z [Term] id: OMP:0005114 name: increased resistance to SDS-EDTA stress def: "An altered resistance to SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is increased relative to a designated control." [OMP:WAM] is_a: OMP:0005126 ! altered resistance to SDS-EDTA stress created_by: wmeza creation_date: 2014-07-07T13:50:45Z [Term] id: OMP:0005115 name: cell cycle phenotype def: "A growth phenotype that relates to the progression of biochemical and morphological events that occur in a cell during cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in some cells or organisms DNA replication and/or nuclear division may not be immediately followed by cell division." [GO:0007049, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "cell division cycle " EXACT [] synonym: "cell division phenotype" RELATED [] xref: GO:0007049 "cell cycle" is_a: OMP:0007167 ! population growth phenotype created_by: wmeza creation_date: 2014-08-07T14:54:52Z [Term] id: OMP:0005116 name: multi-organism process phenotype def: "A microbial phenotype related to a biological process that involves two or more organisms of the same or different species." [GO:0051704, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0051704 "multi-organism process" is_a: OMP:0000000 ! microbial phenotype created_by: wmeza creation_date: 2014-07-08T17:10:17Z [Term] id: OMP:0005117 name: presence of hemolysis def: "A hemolysis test phenotype where a cell or cells causes hemolysis." [OMP:WAM] is_a: OMP:0000099 ! hemolysis test created_by: wmeza creation_date: 2014-07-08T17:55:17Z [Term] id: OMP:0005118 name: altered resistance to acidic pH stress phenotype def: "A resistance to acidic pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to acidic pH is altered relative to a designated control." [OMP:WAM] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007573 ! resistance to acidic pH stress phenotype created_by: wmeza creation_date: 2014-07-11T12:55:53Z [Term] id: OMP:0005119 name: altered resistance to alkaline pH stress phenotype def: "A resistance to alkaline pH stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to alkaline pH stress is altered relative to a designated control." [OMP:WAM] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007574 ! resistance to alkaline pH stress phenotype created_by: wmeza creation_date: 2014-07-11T12:58:56Z [Term] id: OMP:0005120 name: altered resistance to dessication stress phenotype def: "A resistance to dessication stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to dessication stress is altered relative to a designated control." [OMP:WAM] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007575 ! resistance to dessication stress phenotype created_by: wmeza creation_date: 2014-07-11T12:59:47Z [Term] id: OMP:0005121 name: altered resistance to freeze/thaw stress def: "A resistance to freeze/thawing stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to cycles of freezing and thawing is altered relative to a designated control." [OMP:JCH] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007593 ! resistance to freeze-thaw stress phenotype created_by: wmeza creation_date: 2014-07-11T13:00:23Z [Term] id: OMP:0005122 name: altered resistance to oxidative stress def: "A resistance to oxidative stress phenotype where the resistance or sensitivity that microbes in a population show to an oxidative stress is altered relative to a designated control." [OMP:WAM] is_a: OMP:0007569 ! resistance to oxidative stress phenotype is_a: OMP:0007572 ! altered resistance to stress created_by: wmeza creation_date: 2014-07-11T13:03:36Z [Term] id: OMP:0005123 name: altered resistance to gamma-ray radiation def: "A resistance to gamma-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to gamma-ray radiation is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005085 ! resistance to gamma-ray radiation phenotype is_a: OMP:0007594 ! altered resistance to radiation stress created_by: wmeza creation_date: 2014-07-11T13:16:15Z [Term] id: OMP:0005124 name: altered resistance to x-ray radiation def: "A resistance to x-ray radiation phenotype where the resistance or sensitivity that microbes in a population show when exposed to x-rays is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005086 ! resistance to x-ray radiation is_a: OMP:0007594 ! altered resistance to radiation stress created_by: wmeza creation_date: 2014-07-11T13:16:47Z [Term] id: OMP:0005125 name: altered UV-radiation resistance def: "A UV-radiation resistance phenotype where the resistance or sensitivity that microbes in a population show when exposed to UV radiation is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005084 ! resistance to UV radiation phenotype is_a: OMP:0007594 ! altered resistance to radiation stress intersection_of: OMP:0005084 ! resistance to UV radiation phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: wmeza creation_date: 2014-07-11T13:56:51Z [Term] id: OMP:0005126 name: altered resistance to SDS-EDTA stress def: "An altered chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to SDS-EDTA is altered relative to a designated control." [OMP:WAM] is_a: OMP:0007586 ! altered resistance to chemical stress created_by: wmeza creation_date: 2014-07-11T13:57:22Z [Term] id: OMP:0005127 name: abolished resistance to acidic pH stress def: "A decreased resistance to acidic pH stress phenotype where resistance of microbes in a population to acidic pH is abolished." [OMP:WAM] is_a: OMP:0005077 ! decreased resistance to acidic pH stress created_by: wmeza creation_date: 2014-07-15T16:46:17Z [Term] id: OMP:0005128 name: abolished resistance to alkaline pH stress def: "A decreased resistance to alkaline pH stress phenotype where the resistance of microbes in a population to alkaline pH is abolished." [OMP:WAM] is_a: OMP:0005079 ! decreased resistance to alkaline pH stress created_by: wmeza creation_date: 2014-07-15T17:31:56Z [Term] id: OMP:0005129 name: altered biofilm def: "A biofilm phenotype that is altered relative to a designated control." [OMP:WAM] is_a: OMP:0000176 ! biofilm phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: wmeza creation_date: 2014-07-16T12:36:13Z [Term] id: OMP:0005130 name: altered enzymatic activity def: "An enzymatic activity phenotype where a specified enzymatic activity is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000221 ! enzymatic activity phenotype is_a: OMP:0007085 ! altered microbial phenotype intersection_of: OMP:0000221 ! enzymatic activity phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: wmeza creation_date: 2014-07-16T17:48:24Z [Term] id: OMP:0005131 name: abolished resistance to oxidative stress def: "A decreased resistance to oxidative stress phenotype where the resistance of microbes in a population to oxidative stress is abolished." [OMP:WAM] is_a: OMP:0005092 ! decreased resistance to oxidative stress is_a: OMP:0007571 ! absence of resistance to oxidative stress created_by: wmeza creation_date: 2014-07-17T14:18:37Z [Term] id: OMP:0005132 name: abolished resistance to gamma ray radiation def: "A decreased resistance to gamma-ray radiation phenotype where the resistance of microbes in a population to gamma-ray radiation is abolished." [OMP:WAM] is_a: OMP:0005094 ! decreased resistance to gamma-ray radiation created_by: wmeza creation_date: 2014-07-17T14:23:39Z [Term] id: OMP:0005133 name: abolished resistance to x-ray radiation def: "A decreased x-ray radiation resistance phenotype where resistance to x-ray radiation is abolished." [OMP:WAM] is_a: OMP:0005096 ! decreased resistance to x-ray radiation created_by: wmeza creation_date: 2014-07-17T14:28:44Z [Term] id: OMP:0005134 name: abolished resistance to UV radiation def: "A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV radiation is abolished." [OMP:WAM] is_a: OMP:0005098 ! decreased resistance to UV radiation is_a: OMP:0007283 ! absence of UV radiation resistance created_by: wmeza creation_date: 2014-07-17T17:22:15Z [Term] id: OMP:0005135 name: abolished resistance to SDS-EDTA stress def: "A decreased SDS-EDTA stress phenotype where the resistance that microbes in a population show when exposed to SDS-EDTA is abolished." [OMP:WAM] is_a: OMP:0005113 ! decreased resistance to SDS-EDTA stress created_by: wmeza creation_date: 2014-07-17T17:39:39Z [Term] id: OMP:0005136 name: altered cell cycle def: "A cell cycle phenotype where progression of the cell cycle is altered relative to a designated control." [OMP:WAM] is_a: OMP:0005115 ! cell cycle phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: wmeza creation_date: 2014-08-07T14:55:46Z [Term] id: OMP:0005137 name: increased septation def: "An altered septation phenotype where formation of new cell septa is increased relative to a designated control." [OMP:WAM] is_a: OMP:0007165 ! altered septation phenotype created_by: wmeza creation_date: 2014-08-07T14:57:39Z [Term] id: OMP:0005138 name: decreased septation def: "An altered septation phenotype where formation of new cell septa is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0007165 ! altered septation phenotype created_by: wmeza creation_date: 2014-08-07T14:58:34Z [Term] id: OMP:0005139 name: presence of resistance to killing by host def: "A resistance to killing by host phenotype where a microbe is resistant to killing by a host." [OMP:JG] is_a: OMP:0005111 ! resistance to killing by host phenotype created_by: Jesus creation_date: 2016-02-02T13:54:09Z [Term] id: OMP:0005140 name: absence of resistance to killing by host def: "A resistance to killing by host phenotype where a microbe is sensitive to killing by a host." [OMP:JG] is_a: OMP:0005111 ! resistance to killing by host phenotype created_by: Jesus creation_date: 2016-02-02T13:54:58Z [Term] id: OMP:0005141 name: altered resistance to killing by host def: "A resistance to killing by host phenotype where the resistance or sensitivity of a microbe to killing by a host cells is altered relative to a designated control." [OMP:JG] is_a: OMP:0005111 ! resistance to killing by host phenotype is_a: OMP:0007403 ! altered microbe-host interaction created_by: Jesus creation_date: 2016-02-02T13:55:50Z [Term] id: OMP:0005142 name: increased resistance to killing by host def: "An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is increased relative to a designated control." [OMP:JG] is_a: OMP:0005141 ! altered resistance to killing by host created_by: Jesus creation_date: 2016-02-02T13:57:14Z [Term] id: OMP:0005143 name: decreased resistance to killing by host def: "An altered resistance to killing by host phenotype where the ability of a microbe to resist killing by a host is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005141 ! altered resistance to killing by host created_by: Jesus creation_date: 2016-02-02T13:57:57Z [Term] id: OMP:0005144 name: vacuolar morphology phenotype def: "A cell morphology phenotype that relates to the morphology of the vacuole, a closed structure, found primarily in eukaryotic cells, that is completely surrounded by a unit membrane and contains liquid material. Cells contain one or several vacuoles, which may have different functions from each other. Vacuoles have a diverse array of functions." [GO:0005773, OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0005773 "vacuole" is_a: OMP:0000071 ! cell morphology phenotype created_by: Jesus creation_date: 2016-02-03T16:33:50Z [Term] id: OMP:0005145 name: altered vacuolar morphology def: "A vacuolar morphology phenotype where the morphology of a vacuole or vacuoles in a cell is altered relative to a designated control." [OMP:JG] is_a: OMP:0005144 ! vacuolar morphology phenotype is_a: OMP:0007103 ! altered cell morphology created_by: Jesus creation_date: 2016-02-03T16:37:58Z [Term] id: OMP:0005146 name: decreased vacuolar size def: "An altered vacuolar morphology phenotype where the size of the vacuole is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005145 ! altered vacuolar morphology created_by: Jesus creation_date: 2016-02-03T16:39:06Z [Term] id: OMP:0005147 name: increased vacuolar size def: "An altered vacuolar morphology phenotype where the size of the vacuole is increased relative to a designated control." [OMP:JG] is_a: OMP:0005145 ! altered vacuolar morphology created_by: Jesus creation_date: 2016-02-03T16:39:51Z [Term] id: OMP:0005148 name: ferric reductase activity phenotype def: "An enzymatic activity phenotype that relates to the presence or absence of ferric reductase, a class of flavin reductases. Ferric reductases act on ferric iron to reduce it by using NADH or NADPH as the electron donor." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-02-11T12:43:04Z [Term] id: OMP:0005149 name: absence of ferric reductase activity def: "A ferric reductase phenotype where an organism does not exhibit ferric reductase activity." [OMP:JG] is_a: OMP:0005148 ! ferric reductase activity phenotype created_by: Jesus creation_date: 2016-02-11T12:44:19Z [Term] id: OMP:0005150 name: altered ferric reductase activity def: "A ferric reductase phenotype where ferric reductase activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005130 ! altered enzymatic activity is_a: OMP:0005148 ! ferric reductase activity phenotype created_by: Jesus creation_date: 2016-02-11T12:44:51Z [Term] id: OMP:0005151 name: decreased ferric reductase activity def: "An altered ferric reductase activity phenotype where ferric reductase activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005150 ! altered ferric reductase activity intersection_of: OMP:0005150 ! altered ferric reductase activity intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: Jesus creation_date: 2016-02-11T12:45:18Z [Term] id: OMP:0005152 name: increased ferric reductase activity def: "An altered ferric reductase activity phenotype where ferric reductase activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005150 ! altered ferric reductase activity intersection_of: OMP:0005150 ! altered ferric reductase activity intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: Jesus creation_date: 2016-02-11T12:45:43Z [Term] id: OMP:0005153 name: presence of ferric reductase activity def: "A ferric reductase phenotype where an organism exhibits ferric reductase activity." [OMP:JG] is_a: OMP:0005148 ! ferric reductase activity phenotype created_by: Jesus creation_date: 2016-02-11T12:46:10Z [Term] id: OMP:0005154 name: protein kinase A activity phenotype def: "An enzymatic activity phenotype that relates to the presence or absence of protein kinase A, an enzyme that belongs to the kinase AGC group. Protein kinase A acts by phosphorylating a wide array of enzymes, ion channels, chromosomal proteins, and transcription factors." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-02-11T13:11:51Z [Term] id: OMP:0005155 name: absence of protein kinase A activity def: "A protein kinase A phenotype where an organism does not exhibit protein kinase A activity." [OMP:JG] is_a: OMP:0005154 ! protein kinase A activity phenotype created_by: Jesus creation_date: 2016-02-11T13:12:38Z [Term] id: OMP:0005156 name: altered protein kinase A activity def: "A protein kinase A phenotype where protein kinase A activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005130 ! altered enzymatic activity is_a: OMP:0005154 ! protein kinase A activity phenotype created_by: Jesus creation_date: 2016-02-11T13:14:19Z [Term] id: OMP:0005157 name: decreased protein kinase A activity def: "An altered protein kinase A activity phenotype where protein kinase A activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005156 ! altered protein kinase A activity intersection_of: OMP:0005156 ! altered protein kinase A activity intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: Jesus creation_date: 2016-02-11T13:14:52Z [Term] id: OMP:0005158 name: increased protein kinase A activity def: "An altered protein kinase A activity phenotype where protein kinase A activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005156 ! altered protein kinase A activity intersection_of: OMP:0005156 ! altered protein kinase A activity intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: Jesus creation_date: 2016-02-11T13:15:29Z [Term] id: OMP:0005159 name: presence of protein kinase A activity def: "A protein kinase A phenotype where an organism exhibits protein kinase A activity." [OMP:JG] is_a: OMP:0005154 ! protein kinase A activity phenotype created_by: Jesus creation_date: 2016-02-11T13:16:11Z [Term] id: OMP:0005160 name: phosphatase activity phenotype def: "An enzymatic activity phenotype that relates to the presence or absence of phosphatase, an enzyme that acts to modulate protein activity in cells. Phosphatase acts by removing phosphate groups off of active proteins making them enzymatically inactive." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-02-11T13:29:38Z [Term] id: OMP:0005161 name: absence of phosphatase activity def: "A phosphatase phenotype where an organism does not exhibit Phosphatase activity." [OMP:JG] is_a: OMP:0005160 ! phosphatase activity phenotype created_by: Jesus creation_date: 2016-02-11T13:31:39Z [Term] id: OMP:0005162 name: altered phosphatase activity def: "A phosphatase phenotype where phosphatase activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005130 ! altered enzymatic activity is_a: OMP:0005160 ! phosphatase activity phenotype created_by: Jesus creation_date: 2016-02-11T13:32:34Z [Term] id: OMP:0005163 name: decreased phosphatase activity def: "A phosphatase activity phenotype where phosphatase activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005162 ! altered phosphatase activity intersection_of: OMP:0005162 ! altered phosphatase activity intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: Jesus creation_date: 2016-02-11T13:33:05Z [Term] id: OMP:0005164 name: increased phosphatase activity def: "An altered phosphatase activity phenotype where phosphatase activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005162 ! altered phosphatase activity intersection_of: OMP:0005162 ! altered phosphatase activity intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: Jesus creation_date: 2016-02-11T13:35:13Z [Term] id: OMP:0005165 name: presence of phosphatase activity def: "A phosphatase phenotype where an organism exhibits phosphatase activity." [OMP:JG] is_a: OMP:0005160 ! phosphatase activity phenotype created_by: Jesus creation_date: 2016-02-11T13:37:34Z [Term] id: OMP:0005166 name: superoxide dismutase activity phenotype def: "An enzymatic activity phenotype relating to the presence or absence of superoxide dismutase, an enzyme that catalyzes the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide." [GO:0004784, OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0004784 "superoxide dismutase activity" is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-02-15T15:25:14Z [Term] id: OMP:0005167 name: absence of superoxide dismutase activity def: "A superoxide dismutase phenotype where an organism does not exhibit superoxide dismutase activity." [OMP:JG] is_a: OMP:0005166 ! superoxide dismutase activity phenotype created_by: Jesus creation_date: 2016-02-15T15:28:14Z [Term] id: OMP:0005168 name: altered superoxide dismutase activity def: "A superoxide dismutase phenotype where superoxide dismutase activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005130 ! altered enzymatic activity is_a: OMP:0005166 ! superoxide dismutase activity phenotype created_by: Jesus creation_date: 2016-02-15T15:29:30Z [Term] id: OMP:0005169 name: decreased superoxide dismutase activity def: "A superoxide dismutase activity phenotype where superoxide dismutase activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005168 ! altered superoxide dismutase activity intersection_of: OMP:0005168 ! altered superoxide dismutase activity intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: Jesus creation_date: 2016-02-15T15:30:28Z [Term] id: OMP:0005170 name: increased superoxide dismutase activity def: "An altered superoxide dismutase activity phenotype where superoxide dismutase activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005168 ! altered superoxide dismutase activity intersection_of: OMP:0005168 ! altered superoxide dismutase activity intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: Jesus creation_date: 2016-02-15T15:31:28Z [Term] id: OMP:0005171 name: presence of superoxide dismutase activity def: "A superoxide dismutase phenotype where an organism exhibits superoxide dismutase activity." [OMP:JG] is_a: OMP:0005166 ! superoxide dismutase activity phenotype created_by: Jesus creation_date: 2016-02-15T15:32:13Z [Term] id: OMP:0005172 name: delayed cell cycle progression def: "An altered cell cycle phenotype where progression of the cell cycle is delayed relative to a designated control." [OMP:JG] is_a: OMP:0005136 ! altered cell cycle created_by: Jesus creation_date: 2016-02-15T16:34:58Z [Term] id: OMP:0005173 name: acid phosphatase activity phenotype def: "An enzymatic activity phenotype that relates to the presence or absence of acid phosphatase, an enzyme that removes phosphoryl groups from other molecules. Acid phosphatase catalyzes the reaction: an orthophosphoric monoester + H2O -> an alcohol + phosphate, with an acid pH optimum." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0003993 "acid phosphatase activity" is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-05-18T14:29:30Z [Term] id: OMP:0005174 name: presence of acid phosphatase activity def: "An acid phosphatase activity phenotype where a cell or cells exhibits acid phosphatase activity." [OMP:JG] is_a: OMP:0005173 ! acid phosphatase activity phenotype created_by: Jesus creation_date: 2016-05-18T14:33:20Z [Term] id: OMP:0005175 name: absence of acid phosphatase activity def: "An acid phosphatase activity phenotype where a cell or cells lacks acid phosphatase activity." [OMP:JG] is_a: OMP:0005173 ! acid phosphatase activity phenotype created_by: Jesus creation_date: 2016-05-18T14:39:41Z [Term] id: OMP:0005176 name: altered acid phosphatase activity def: "An acid phosphatase activity phenotype where acid phosphatase activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005173 ! acid phosphatase activity phenotype created_by: Jesus creation_date: 2016-05-18T14:40:33Z [Term] id: OMP:0005177 name: decreased acid phosphatase activity def: "An altered acid phosphatase activity phenotype where acid phosphatase activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005176 ! altered acid phosphatase activity created_by: Jesus creation_date: 2016-05-18T14:41:06Z [Term] id: OMP:0005178 name: abolished acid phosphatase activity def: "A decreased acid phosphatase activity phenotype where acid phosphatase activity is abolished." [OMP:JG] is_a: OMP:0005177 ! decreased acid phosphatase activity created_by: Jesus creation_date: 2016-05-18T14:41:52Z [Term] id: OMP:0005179 name: increased acid phosphatase activity def: "An altered acid phosphatase activity phenotype where acid phosphatase activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005176 ! altered acid phosphatase activity created_by: Jesus creation_date: 2016-05-18T14:43:12Z [Term] id: OMP:0005180 name: cytoskeleton morphology phenotype def: "A cell morphology phenotype relating to the form and function of the cytoskeleton, any of the various filamentous elements that form the internal framework of cells." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0005856 "cytoskeleton" is_a: OMP:0000071 ! cell morphology phenotype created_by: Jesus creation_date: 2016-05-21T09:09:03Z [Term] id: OMP:0005181 name: altered cytoskeleton morphology phenotype def: "A cytoskeleton morphology phenotype where the morphology of the cytoskeleton is altered relative to a designated control." [GO:JG] is_a: OMP:0005180 ! cytoskeleton morphology phenotype is_a: OMP:0007103 ! altered cell morphology created_by: Jesus creation_date: 2016-05-21T09:57:50Z [Term] id: OMP:0005182 name: actin cytoskeleton morphology phenotype def: "A cytoskeleton morphology phenotype relating to the part of the cytoskeleton that is composed of actin and associated proteins." [OMP:JG] xref: GO:00015629 is_a: OMP:0005180 ! cytoskeleton morphology phenotype created_by: Jesus creation_date: 2016-05-21T09:59:30Z [Term] id: OMP:0005183 name: absence of actin cytoskeleton def: "An actin cytoskeleton morphology phenotype where a cell or cells lack an actin cytoskeleton." [OMP:JG] is_a: OMP:0005182 ! actin cytoskeleton morphology phenotype created_by: Jesus creation_date: 2016-05-21T10:01:36Z [Term] id: OMP:0005184 name: presence of actin cytoskeleton def: "An actin cytoskeleton morphology phenotype where a cell or cells exhibit an actin cytoskeleton." [OMP:JG] is_a: OMP:0005182 ! actin cytoskeleton morphology phenotype created_by: Jesus creation_date: 2016-05-21T10:03:01Z [Term] id: OMP:0005185 name: altered actin cytoskeleton morphology def: "An actin cytoskeleton morphology phenotype where the morphology of the actin cytoskeleton is altered relative to a designated control." [OMP:JG] is_a: OMP:0005181 ! altered cytoskeleton morphology phenotype is_a: OMP:0005182 ! actin cytoskeleton morphology phenotype created_by: Jesus creation_date: 2016-05-21T10:03:47Z [Term] id: OMP:0005186 name: decreased cytoskeleton phenotype def: "An altered cytoskeleton morphology phenotype where \ncytoskeleton morphology is decreased relative to a designated control." [OMP:JG] is_obsolete: true created_by: Jesus creation_date: 2016-05-21T10:04:40Z [Term] id: OMP:0005187 name: abolished cytoskeleton morphology def: "A decreased cytoskeleton morphology phenotype where cytoskeleton morphology is abolished." [OMP:JG] is_obsolete: true created_by: Jesus creation_date: 2016-05-21T10:05:21Z [Term] id: OMP:0005188 name: increased cytoskeleton morphology def: "An altered cytoskeleton morphology phenotype where \ncytoskeleton morphology is increased relative to a designated control." [OMP:JG] is_obsolete: true created_by: Jesus creation_date: 2016-05-21T10:06:05Z [Term] id: OMP:0005189 name: anaerobic growth phenotype def: "An oxygen growth range phenotype related to the ability of a cell or cells to grow or reproduce in the absence of oxygen." [OMP:JG] is_a: OMP:0000039 ! oxygen growth range phenotype created_by: Jesus creation_date: 2016-06-09T15:08:16Z [Term] id: OMP:0005190 name: presence of anaerobic growth def: "An anaerobic growth phenotype where a cell or cells exhibit anaerobic growth." [OMP:JG] is_a: OMP:0005189 ! anaerobic growth phenotype created_by: Jesus creation_date: 2016-06-09T15:10:36Z [Term] id: OMP:0005191 name: absence of anaerobic growth def: "An anaerobic growth phenotype where a cell or cells lack the ability to undergo anaerobic growth." [OMP:JG] is_a: OMP:0005189 ! anaerobic growth phenotype created_by: Jesus creation_date: 2016-06-09T15:12:13Z [Term] id: OMP:0005192 name: altered anaerobic growth def: "An anaerobic growth phenotype where the ability of a cell or cells to undergo anaerobic growth is altered relative to a designated control." [OMP:JG] is_a: OMP:0005189 ! anaerobic growth phenotype created_by: Jesus creation_date: 2016-06-09T15:12:52Z [Term] id: OMP:0005193 name: increased anaerobic growth yield def: "An altered anaerobic growth phenotype where the anaerobic growth yield is increased relative to a designated control." [OMP:JG] is_a: OMP:0005192 ! altered anaerobic growth created_by: Jesus creation_date: 2016-06-09T15:13:45Z [Term] id: OMP:0005194 name: decreased anaerobic growth yield def: "An altered anaerobic growth phenotype where the anaerobic growth yield is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005192 ! altered anaerobic growth created_by: Jesus creation_date: 2016-06-09T15:14:35Z [Term] id: OMP:0005195 name: abolished anaerobic growth def: "An altered anaerobic growth phenotype where anaerobic growth is abolished." [OMP:JG] is_a: OMP:0005192 ! altered anaerobic growth created_by: Jesus creation_date: 2016-06-09T15:15:50Z [Term] id: OMP:0005196 name: increased rate of anaerobic growth def: "An altered anaerobic growth phenotype where the anaerobic growth rate is increased relative to a designated control." [OMP:JG] is_a: OMP:0005192 ! altered anaerobic growth created_by: Jesus creation_date: 2016-06-09T15:19:53Z [Term] id: OMP:0005197 name: decreased rate of anaerobic growth def: "An altered anaerobic growth phenotype where the anaerobic growth rate is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005192 ! altered anaerobic growth created_by: Jesus creation_date: 2016-06-09T15:21:49Z [Term] id: OMP:0005198 name: alpha-1,3-mannosyltransferase activity phenotype def: "An enzymatic activity phenotype that relates to the presence or absence of alpha-1,3- mannosyltransferase. Alpha-1,3- mannosyltransferase promotes the catalysis of the transfer of a mannose residue to an oligosaccharide, forming an alpha-(1,3) linkage." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0000033 "alpha-1,3- mannosyltransferase activity" is_a: OMP:0000221 ! enzymatic activity phenotype created_by: Jesus creation_date: 2016-06-09T23:05:33Z [Term] id: OMP:0005199 name: presence of alpha-1,3-mannosyltransferase activity def: "An alpha-1,3-mannosyltransferase activity phenotype where an organism exhibits alpha-1,3-mannosyltransferase activity." [OMP:JG] is_a: OMP:0005198 ! alpha-1,3-mannosyltransferase activity phenotype created_by: Jesus creation_date: 2016-06-09T23:08:19Z [Term] id: OMP:0005200 name: absence of alpha-1,3-mannosyltransferase activity def: "An alpha-1,3-mannosyltransferase activity phenotype where an organism lacks alpha-1,3-mannosyltransferase activity." [GO:JG] is_a: OMP:0005198 ! alpha-1,3-mannosyltransferase activity phenotype created_by: Jesus creation_date: 2016-06-09T23:09:26Z [Term] id: OMP:0005201 name: altered alpha-1,3-mannosyltransferase activity def: "An alpha-1,3- mannosyltransferase activity phenotype where alpha-1,3-mannosyltransferase activity is altered relative to a designated control." [OMP:JG] is_a: OMP:0005198 ! alpha-1,3-mannosyltransferase activity phenotype created_by: Jesus creation_date: 2016-06-09T23:13:17Z [Term] id: OMP:0005202 name: increased alpha-1,3-mannosyltransferase activity def: "An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is increased relative to a designated control." [OMP:JG] is_a: OMP:0005201 ! altered alpha-1,3-mannosyltransferase activity created_by: Jesus creation_date: 2016-06-09T23:14:41Z [Term] id: OMP:0005203 name: decreased alpha-1,3-mannosyltransferase activity def: "An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005201 ! altered alpha-1,3-mannosyltransferase activity created_by: Jesus creation_date: 2016-06-09T23:15:42Z [Term] id: OMP:0005204 name: abolished alpha-1,3-mannosyltransferase activity def: "An altered alpha-1,3-mannosyltransferase activity phenotype where alpha-1,3- mannosyltransferase activity is abolished." [OMP:JG] is_a: OMP:0005201 ! altered alpha-1,3-mannosyltransferase activity created_by: Jesus creation_date: 2016-06-09T23:16:29Z [Term] id: OMP:0005205 name: adhesion phenotype def: "A biological process phenotype that relates to the ability of a microbe to attach to a substrate in the environment or in a host, either directly or indirectly." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000288 "adhesion" xref: GO:0022610 "biological adhesion" is_a: OMP:0007194 ! biological process phenotype created_by: Jesus creation_date: 2016-06-20T14:06:30Z [Term] id: OMP:0005206 name: adhesion to host phenotype def: "An adhesion phenotype that relates to the ability of a microbe to attach to a host via adhesion molecules, general stickiness, etc., either directly or indirectly. The host is defined as the larger of the organisms involved in a symbiotic relationship." [OMP:JG] xref: GO:0044406 "adhesion to host" is_a: OMP:0005205 ! adhesion phenotype is_a: OMP:0007252 ! colonization of a host phenotype created_by: Jesus creation_date: 2016-06-20T14:10:51Z [Term] id: OMP:0005207 name: absence of adhesion to host def: "An adhesion to host phenotype where a microbe lacks the ability to attach to a host." [OMP:JG] is_a: OMP:0005206 ! adhesion to host phenotype created_by: Jesus creation_date: 2016-06-20T14:12:43Z [Term] id: OMP:0005208 name: presence of adhesion to host def: "An adhesion to host phenotype where a microbe has the ability to attach to a host." [OMP:JG] is_a: OMP:0005206 ! adhesion to host phenotype created_by: Jesus creation_date: 2016-06-20T14:14:40Z [Term] id: OMP:0005209 name: altered adhesion to host def: "An adhesion to host phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a host is altered relative to a designated control." [OMP:JG] is_a: OMP:0005206 ! adhesion to host phenotype is_a: OMP:0007351 ! altered biological process created_by: Jesus creation_date: 2016-06-20T14:15:04Z [Term] id: OMP:0005210 name: decreased adhesion to host def: "An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005209 ! altered adhesion to host created_by: Jesus creation_date: 2016-06-20T14:16:04Z [Term] id: OMP:0005211 name: abolished adhesion to host def: "A decreased adhesion to host phenotype where attachment of a microbe to a host is abolished." [OMP:JG] is_a: OMP:0005210 ! decreased adhesion to host created_by: Jesus creation_date: 2016-06-20T14:16:42Z [Term] id: OMP:0005212 name: increased adhesion to host def: "An altered adhesion to host phenotype where the frequency, rate, or extent of attachment of a microbe to a host is increased relative to a designated control." [OMP:JG] is_a: OMP:0005209 ! altered adhesion to host created_by: Jesus creation_date: 2016-06-20T14:17:26Z [Term] id: OMP:0005213 name: presence of adhesion def: "An adhesion phenotype where a microbe has the ability to attach to a substrate in the environment or in a host, either directly or indirectly." [OMP:JG] is_a: OMP:0005205 ! adhesion phenotype created_by: Jesus creation_date: 2016-06-20T14:19:00Z [Term] id: OMP:0005214 name: absence of adhesion def: "An adhesion phenotype where a microbe lacks the ability to attach to a substrate in the environment or in a host, either directly or indirectly." [OMP:JG] is_a: OMP:0005205 ! adhesion phenotype created_by: Jesus creation_date: 2016-06-20T14:19:34Z [Term] id: OMP:0005215 name: altered adhesion def: "An adhesion phenotype where the frequency, rate, timing, or extent of attachment of a microbe to a surface is altered relative to a designated control." [OMP:JG] is_a: OMP:0005205 ! adhesion phenotype is_a: OMP:0007351 ! altered biological process created_by: Jesus creation_date: 2016-06-20T14:20:13Z [Term] id: OMP:0005216 name: increased adhesion def: "An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is increased relative to a designated control." [OMP:JG] is_a: OMP:0005215 ! altered adhesion created_by: Jesus creation_date: 2016-06-20T14:20:57Z [Term] id: OMP:0005217 name: decreased adhesion def: "An altered adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005215 ! altered adhesion created_by: Jesus creation_date: 2016-06-20T14:21:29Z [Term] id: OMP:0005218 name: abolished adhesion def: "A decreased adhesion phenotype where the frequency, rate, or extent of attachment of a microbe to a surface is abolished." [OMP:JG] is_a: OMP:0005217 ! decreased adhesion created_by: Jesus creation_date: 2016-06-20T14:22:55Z [Term] id: OMP:0005219 name: cell fusion phenotype def: "A cellular process phenotype involving the fusion of individual cells from different organisms." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0007332 ! cellular process phenotype created_by: Jesus creation_date: 2016-06-20T23:02:09Z [Term] id: OMP:0005220 name: presence of cell fusion def: "A cell fusion phenotype where fusion of individual cells from different organisms occurs." [OMP:JG] is_a: OMP:0005219 ! cell fusion phenotype created_by: Jesus creation_date: 2016-06-20T23:03:39Z [Term] id: OMP:0005221 name: altered cell fusion def: "A cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is altered relative to a designated control." [OMP:JG] is_a: OMP:0005219 ! cell fusion phenotype created_by: Jesus creation_date: 2016-06-20T23:04:36Z [Term] id: OMP:0005222 name: increased cell fusion def: "An altered cell fusion phenotype where the frequency, rate, timing, or extent of cell fusion is increased relative to a designated control." [OMP:JG] is_a: OMP:0005221 ! altered cell fusion created_by: Jesus creation_date: 2016-06-20T23:07:58Z [Term] id: OMP:0005223 name: decreased cell fusion def: "An altered cell fusion phenotype where the frequency, rate, timing, or extent of fusion is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005221 ! altered cell fusion created_by: Jesus creation_date: 2016-06-20T23:08:40Z [Term] id: OMP:0005224 name: abolished cell fusion def: "A decreased cell fusion phenotype where the frequency, rate, timing or extent of cell fusion is abolished." [OMP:JG] is_a: OMP:0005223 ! decreased cell fusion created_by: Jesus creation_date: 2016-06-20T23:09:29Z [Term] id: OMP:0005225 name: delayed cell fusion def: "An altered cell fusion phenotype where the occurrence of cell fusion is delayed relative to a designated control." [OMP:JG] is_a: OMP:0005221 ! altered cell fusion created_by: Jesus creation_date: 2016-06-20T23:10:02Z [Term] id: OMP:0005226 name: cell fusion during mating phenotype def: "A cell fusion phenotype relating to the fusion of individual cells from each partner during mating." [OMP:JG] synonym: "conjugation with cellular fusion" RELATED [GO:0000747] xref: APO:0000033 "cell fusion" is_a: OMP:0005219 ! cell fusion phenotype is_a: OMP:0007412 ! mating phenotype created_by: Jesus creation_date: 2016-06-20T23:11:14Z [Term] id: OMP:0005227 name: presence of cell fusion during mating def: "A cell fusion during mating phenotype where individual cells from each partner fuse during mating." [OMP:JG] is_a: OMP:0005226 ! cell fusion during mating phenotype created_by: Jesus creation_date: 2016-06-20T23:15:38Z [Term] id: OMP:0005228 name: absence of cell fusion during mating def: "A cell fusion during mating phenotype where cell fusion does not occur during mating." [OMP:JG] is_a: OMP:0005226 ! cell fusion during mating phenotype created_by: Jesus creation_date: 2016-06-20T23:16:33Z [Term] id: OMP:0005229 name: altered cell fusion during mating def: "A cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion during mating is altered relative to a designated control." [OMP:JG] is_a: OMP:0005226 ! cell fusion during mating phenotype created_by: Jesus creation_date: 2016-06-20T23:17:17Z [Term] id: OMP:0005230 name: increased cell fusion during mating def: "An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is increased during mating." [OMP:JG] is_a: OMP:0005229 ! altered cell fusion during mating created_by: Jesus creation_date: 2016-06-20T23:17:51Z [Term] id: OMP:0005231 name: decreased cell fusion during mating def: "An altered cell fusion during mating phenotype where the frequency, rate, timing, or extent of cell fusion is decreased during mating." [OMP:JG] is_a: OMP:0005229 ! altered cell fusion during mating created_by: Jesus creation_date: 2016-06-20T23:21:08Z [Term] id: OMP:0005232 name: abolished cell fusion during mating def: "A decreased cell fusion during mating phenotype where the frequency, rate, timing, or extent of fusion during mating is abolished." [OMP:JG] is_a: OMP:0005231 ! decreased cell fusion during mating created_by: Jesus creation_date: 2016-06-20T23:21:44Z [Term] id: OMP:0005233 name: cell wall morphology phenotype def: "A cell envelope morphology phenotype relating to the structure, size, shape, or appearance of the cell wall, which is a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis." [GO:0005618, OMP:JG] xref: APO:0000053 "Cell wall morphology" is_a: OMP:0000085 ! cell envelope morphology phenotype created_by: Jesus creation_date: 2016-06-20T23:33:27Z [Term] id: OMP:0005234 name: altered cell wall morphology def: "A cell wall morphology phenotype where the size, shape, or appearance of the cell wall is altered relative to a designated control." [OMP:JG] is_a: OMP:0005233 ! cell wall morphology phenotype is_a: OMP:0007103 ! altered cell morphology created_by: Jesus creation_date: 2016-06-20T23:36:20Z [Term] id: OMP:0005235 name: presence of cell wall def: "A cell wall morphology phenotype where a cell or cells exhibit a cell wall." [OMP:JG] is_a: OMP:0005233 ! cell wall morphology phenotype created_by: Jesus creation_date: 2016-06-20T23:37:37Z [Term] id: OMP:0005236 name: absence of cell wall def: "A cell wall morphology phenotype where a cell or cells lack a cell wall." [OMP:JG] is_a: OMP:0005233 ! cell wall morphology phenotype created_by: Jesus creation_date: 2016-06-20T23:38:17Z [Term] id: OMP:0005237 name: golgi apparatus phenotype def: "A cellular component phenotype relating to the golgi apparatus, which is the endomembranous cytoplasmic eukaryotic organelle involved in secretion and intracellular transport." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0005794 "golgi apparatus" is_a: OMP:0007197 ! cellular component phenotype created_by: Jesus creation_date: 2016-06-20T23:41:43Z [Term] id: OMP:0005238 name: golgi apparatus morphology phenotype def: "A golgi apparatus phenotype that relates to the size, shape, or appearance of the Golgi apparatus or its parts. The golgi apparatus usually appears as flattened ribosome-free vesicles arranged in a more or less regular stack." [OMP:JG] xref: APO:0000243 "Golgi morphology" is_a: OMP:0005237 ! golgi apparatus phenotype created_by: Jesus creation_date: 2016-06-20T23:43:17Z [Term] id: OMP:0005239 name: altered golgi morphology def: "A golgi apparatus morphology phenotype where the morphology of the golgi apparatus is altered relative to a designated control." [OMP:JG] is_a: OMP:0005238 ! golgi apparatus morphology phenotype created_by: Jesus creation_date: 2016-06-20T23:44:33Z [Term] id: OMP:0005240 name: presence of golgi apparatus def: "A golgi apparatus phenotype where a cell or cells exhibit a golgi apparatus." [OMP:JG] is_a: OMP:0005237 ! golgi apparatus phenotype created_by: Jesus creation_date: 2016-06-20T23:45:22Z [Term] id: OMP:0005241 name: absence of golgi apparatus def: "A golgi apparatus phenotype where a cell or cells lack a golgi apparatus." [OMP:JG] is_a: OMP:0005237 ! golgi apparatus phenotype created_by: Jesus creation_date: 2016-06-20T23:46:03Z [Term] id: OMP:0005242 name: delayed cell fusion during mating def: "An altered cell fusion during mating phenotype where the timing of cell fusion during mating is delayed relative to a designated control." [OMP:JG] is_a: OMP:0005229 ! altered cell fusion during mating created_by: Jesus creation_date: 2016-06-23T14:28:58Z [Term] id: OMP:0005243 name: filamentous growth phenotype def: "An organismal growth phenotype relating to the process by which a multicellular organism, a unicellular organism, or a group of unicellular organisms grow in a threadlike, filamentous shape." [GO:0030447, OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000027 "development" xref: GO:0030447 "filamentous growth" is_a: OMP:0000174 ! growth phenotype created_by: Jesus creation_date: 2016-06-23T14:38:44Z [Term] id: OMP:0005244 name: altered filamentous growth def: "A filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is altered relative to a designated control." [OMP:JG] is_a: OMP:0005243 ! filamentous growth phenotype created_by: Jesus creation_date: 2016-06-23T14:41:10Z [Term] id: OMP:0005245 name: increased filamentous growth def: "An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous growth is increased relative to a designated control." [OMP:JG] is_a: OMP:0005244 ! altered filamentous growth created_by: Jesus creation_date: 2016-06-23T14:41:44Z [Term] id: OMP:0005246 name: decreased filamentous growth def: "An altered filamentous growth phenotype where the frequency, rate, or extent of filamentous is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005244 ! altered filamentous growth created_by: Jesus creation_date: 2016-06-23T14:42:18Z [Term] id: OMP:0005247 name: abolished filamentous growth def: "A decreased filamentous growth phenotype where the ability of a microorganism to exhibit filamentous growth is abolished." [OMP:JG] is_a: OMP:0005246 ! decreased filamentous growth created_by: Jesus creation_date: 2016-06-23T14:42:45Z [Term] id: OMP:0005248 name: presence of filamentous growth def: "A filamentous growth phenotype where a microbe exhibits filamentous growth." [OMP:JG] is_a: OMP:0005243 ! filamentous growth phenotype created_by: Jesus creation_date: 2016-06-23T14:43:53Z [Term] id: OMP:0005249 name: absence of filamentous growth def: "A filamentous growth phenotype where a microbe does not exhibit filamentous growth." [OMP:JG] is_a: OMP:0005243 ! filamentous growth phenotype created_by: Jesus creation_date: 2016-06-23T14:44:33Z [Term] id: OMP:0005250 name: aerobic growth phenotype def: "An oxygen growth range phenotype related to the ability of a cell or cells to grow and/or reproduce in the presence of oxygen at the level found in air (approximately 21%)." [OMP:JG] is_a: OMP:0000039 ! oxygen growth range phenotype created_by: Jesus creation_date: 2016-06-23T14:59:55Z [Term] id: OMP:0005251 name: absence of aerobic growth def: "An aerobic growth phenotype where a cell or cells lack the ability to undergo aerobic growth." [OMP:JG] is_a: OMP:0005250 ! aerobic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:00:52Z [Term] id: OMP:0005252 name: altered of aerobic growth def: "An aerobic growth phenotype where the ability of a cell or cells to undergo aerobic growth is altered relative to a designated control." [OMP:JG] is_a: OMP:0005250 ! aerobic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:01:40Z [Term] id: OMP:0005253 name: presence of aerobic growth def: "An aerobic growth phenotype where a cell or cells are able to undergo aerobic growth." [OMP:JG] is_a: OMP:0005250 ! aerobic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:02:38Z [Term] id: OMP:0005254 name: hypoxic growth phenotype def: "An aerobic growth phenotype relating to the ability of a cell or cells to grow and/or reproduce in a hypoxic condition, which is one where O2 levels are below that found in air (approximately 21%)." [OMP:JG] is_a: OMP:0005250 ! aerobic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:04:24Z [Term] id: OMP:0005255 name: presence of hypoxic growth def: "A hypoxic growth phenotype in which a cell or cells are able to grow and/or reproduce in hypoxic conditions." [OMP:JG] is_a: OMP:0005254 ! hypoxic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:05:26Z [Term] id: OMP:0005256 name: absence of hypoxic growth def: "A hypoxic growth phenotype in which a cell or cells are unable to grow and/or reproduce in hypoxic conditions." [JG:OMP] is_a: OMP:0005254 ! hypoxic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:06:52Z [Term] id: OMP:0005257 name: altered hypoxic growth def: "A hypoxic growth phenotype where the frequency, rate, or extent of hypoxic growth is altered relative to a designated control." [OMP:JG] is_a: OMP:0005254 ! hypoxic growth phenotype created_by: Jesus creation_date: 2016-06-23T15:07:30Z [Term] id: OMP:0005258 name: increased hypoxic growth rate def: "An altered hypoxic growth phenotype where the rate of growth under hypoxic conditions is increased relative to a designated control." [OMP:JG] is_a: OMP:0005257 ! altered hypoxic growth created_by: Jesus creation_date: 2016-06-23T15:07:51Z [Term] id: OMP:0005259 name: decreased hypoxic growth rate def: "An altered hypoxic growth phenotype where the rate of growth under hypoxic conditions is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005257 ! altered hypoxic growth created_by: Jesus creation_date: 2016-06-23T15:08:31Z [Term] id: OMP:0005260 name: transport phenotype def: "A cellular process phenotype relating to transport, which is the directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of, or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0006810 is_a: OMP:0007332 ! cellular process phenotype created_by: Jesus creation_date: 2016-06-27T14:17:43Z [Term] id: OMP:0005261 name: endocytosis phenotype def: "A transport phenotype relating to endocytosis, which is a vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." [OMP:JG] xref: APO:0000075 xref: FYPO:0003886 xref: GO:0006897 is_a: OMP:0005260 ! transport phenotype created_by: Jesus creation_date: 2016-06-27T14:20:19Z [Term] id: OMP:0005262 name: altered endocytosis def: "An endocytosis phenotype where the frequency, rate, timing, or extent of the process of endocytosis is altered relative to a designated control." [OMP:JG] is_a: OMP:0005261 ! endocytosis phenotype created_by: Jesus creation_date: 2016-06-27T14:23:04Z [Term] id: OMP:0005263 name: increased endocytosis def: "An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is increased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." [OMP:JG] synonym: "increased endocytosis during vegetative growth" NARROW [FYPO:0000425] xref: FYPO:0000425 is_a: OMP:0005262 ! altered endocytosis created_by: Jesus creation_date: 2016-06-27T14:23:59Z [Term] id: OMP:0005264 name: decreased endocytosis def: "An altered endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is decreased relative to a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." [OMP:JG] synonym: "decreased endocytosis during vegetative growth" NARROW [FYPO:0000422] xref: FYPO:0000422 is_a: OMP:0005262 ! altered endocytosis created_by: Jesus creation_date: 2016-06-27T14:26:10Z [Term] id: OMP:0005265 name: abolished endocytosis def: "A decreased endocytosis phenotype where the frequency, rate, timing, or extent of endocytosis is abolished." [OMP:JG] synonym: "abolished endocytosis during vegetative growth " NARROW [FYPO:0000421] is_a: OMP:0005264 ! decreased endocytosis created_by: Jesus creation_date: 2016-06-27T14:29:14Z [Term] id: OMP:0005266 name: delayed onset of endocytosis def: "An altered endocytosis phenotype where endocytosis begins later than in a designated control. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein." [OMP:JG] synonym: "delayed onset of endocytosis during vegetative growth " RELATED [FYPO:0000424] is_a: OMP:0005262 ! altered endocytosis created_by: Jesus creation_date: 2016-06-27T14:31:13Z [Term] id: OMP:0005267 name: presence of endocytosis def: "An endocytosis phenotype where an organism, cell,or cells possess the ability to perform endocytosis." [OMP:JG] is_a: OMP:0005261 ! endocytosis phenotype created_by: Jesus creation_date: 2016-06-27T14:32:32Z [Term] id: OMP:0005268 name: absence of endocytosis def: "An endocytosis phenotype where an organism, cell, or cells lacks the ability to perform endocytosis." [OMP:JG] is_a: OMP:0005261 ! endocytosis phenotype created_by: Jesus creation_date: 2016-06-27T14:33:03Z [Term] id: OMP:0005269 name: endomembrane system phenotype def: "A cellular component phenotype relating to the endomembrane, a collection of membranous structures involved in transport within the cell. The endomembrane system includes the nuclear envelope, endoplasmic reticulum, Golgi apparatus, vacuoles, vesicles, and the plasma membrane. Members of the endomembrane system pass materials through each other or through the use of vesicles." [OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0012505 "endomembrane system" xref: PMID:19121819 is_a: OMP:0007197 ! cellular component phenotype created_by: Jesus creation_date: 2016-06-27T14:45:57Z [Term] id: OMP:0005270 name: endomembrane system morphology phenotype def: "An endomembrane system phenotype that relates to the form and structure of components of the endomembrane system." [OMP:JG] xref: APO:0000303 "endomembrane system morphology" is_a: OMP:0005269 ! endomembrane system phenotype created_by: Jesus creation_date: 2016-06-27T14:48:31Z [Term] id: OMP:0005271 name: altered endomembrane system morphology def: "An endomembrane system morphology phenotype where the morphology of the endomembrane system is altered relative to a designated control." [OMP:JG] is_a: OMP:0005270 ! endomembrane system morphology phenotype created_by: Jesus creation_date: 2016-06-27T14:51:21Z [Term] id: OMP:0005272 name: presence of endomembrane system def: "An endomembrane system phenotype where an organism, cell, or cells exhibit an endomembrane system." [OMP:JG] is_a: OMP:0005269 ! endomembrane system phenotype created_by: Jesus creation_date: 2016-06-27T14:52:02Z [Term] id: OMP:0005273 name: absence of endomembrane system def: "An endomembrane system phenotype where an organism, cell, or cells lack an endomembrane system." [OMP:JG] is_a: OMP:0005269 ! endomembrane system phenotype created_by: Jesus creation_date: 2016-06-27T14:52:45Z [Term] id: OMP:0005274 name: organic heterocyclic compound resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic heterocyclic compound, which is any cyclic compound having as ring members atoms of carbon and at least of one other element." [CHEBI:24532, OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "A22 resistance phenotype" NARROW [CID:16741200] synonym: "actinomycin D resistance phenotype" NARROW [CHEBI:27666] synonym: "chloripromazine resistance phenotype" NARROW [CHEBI:3647] synonym: "coumarin resistance phenotype" NARROW [CHEBI:28794] synonym: "cycloheximide resistance phenotype" NARROW [CHEBI:27641] synonym: "D-cycloserine resistance phenotype" NARROW [CHEBI:40009] synonym: "methotrexate resistance phenotype" NARROW [CHEBI:44185] synonym: "nitrofurantoin resistance pheynotype" NARROW [CHEBI:71415] synonym: "paraquat dichloride resistance phenotype" NARROW [CHEBI:34905] synonym: "phenazine methosulfate resistance phenotype" NARROW [CHEBI:53396] synonym: "pyocyanin resistance phenotype" NARROW [CHEBI:62220] synonym: "radicicol resistance phenotype" NARROW [CHEBI:556075] synonym: "rifampicin resistance phenotype" NARROW [CHEBI:28077] synonym: "thiolactomycin resistance phenotype" NARROW [CID:445629] synonym: "thiolactone resistance phenotype" NARROW [CHEBI:60317] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: Jesus creation_date: 2016-07-15T15:29:19Z [Term] id: OMP:0005275 name: altered organic heterocyclic compound resistance def: "An organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is altered relative to a designated control." [OMP:JG] is_a: OMP:0005274 ! organic heterocyclic compound resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: Jesus creation_date: 2016-07-15T15:33:41Z [Term] id: OMP:0005276 name: decreased resistance to organic heterocyclic compound def: "An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005275 ! altered organic heterocyclic compound resistance created_by: Jesus creation_date: 2016-07-15T15:34:14Z [Term] id: OMP:0005277 name: abolished resistance to organic heterocyclic compound def: "A decreased resistance to organic heterocyclic compounds phenotype where resistance an organic heterocyclic compound is abolished." [OMP:JG] is_a: OMP:0005276 ! decreased resistance to organic heterocyclic compound is_a: OMP:0005279 ! not resistant to organic heterocyclic compound created_by: Jesus creation_date: 2016-07-15T15:34:45Z [Term] id: OMP:0005278 name: increased resistance to organic heterocyclic compound def: "An altered organic heterocyclic compound resistance phenotype where the frequency, rate, timing, or extent of resistance to an organic heterocyclic compound is increased relative to a designated control." [OMP:JG] is_a: OMP:0005275 ! altered organic heterocyclic compound resistance created_by: Jesus creation_date: 2016-07-15T15:35:37Z [Term] id: OMP:0005279 name: not resistant to organic heterocyclic compound def: "An organic heterocyclic compound resistance phenotype where an organism or cell is sensitive to an organic heterocyclic compound." [OMP:JG] is_a: OMP:0005274 ! organic heterocyclic compound resistance phenotype created_by: Jesus creation_date: 2016-07-15T15:36:29Z [Term] id: OMP:0005280 name: resistant to organic heterocyclic compound def: "An organic heterocyclic compound resistance phenotype where an organism, cell, or cells is resistant to an organic heterocyclic compounds." [OMP:JG] synonym: "cycloheximide" NARROW [CHEBI:27641] is_a: OMP:0005274 ! organic heterocyclic compound resistance phenotype created_by: Jesus creation_date: 2016-07-15T15:37:34Z [Term] id: OMP:0005281 name: colonization of host tissue phenotype def: "A colonization of a host phenotype relating to the ability of a microbe to colonize a host tissue." [OMP:JG] is_a: OMP:0007252 ! colonization of a host phenotype created_by: Jesus creation_date: 2016-08-16T01:05:03Z [Term] id: OMP:0005282 name: presence of colonization of host tissue def: "A colonization of host tissue phenotype where a microbe is able to colonize the tissue of a host." [OMP:JG] is_a: OMP:0005281 ! colonization of host tissue phenotype created_by: Jesus creation_date: 2016-08-16T01:06:46Z [Term] id: OMP:0005283 name: absence of colonization of host tissue def: "A colonization of host tissue phenotype where a microbe is unable to colonize the tissue of a host." [OMP:JG] is_a: OMP:0005281 ! colonization of host tissue phenotype created_by: Jesus creation_date: 2016-08-16T01:07:20Z [Term] id: OMP:0005284 name: altered colonization of host tissue def: "A colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is altered relative to a designated control." [OMP:JG] is_a: OMP:0005281 ! colonization of host tissue phenotype is_a: OMP:0007255 ! altered colonization of a host created_by: Jesus creation_date: 2016-08-16T01:07:57Z [Term] id: OMP:0005285 name: increased colonization of host tissue def: "An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is increased relative to a designated control." [OMP:JG] is_a: OMP:0005284 ! altered colonization of host tissue created_by: Jesus creation_date: 2016-08-16T01:08:32Z [Term] id: OMP:0005286 name: decreased colonization of host tissue def: "An altered colonization of host tissue phenotype where the frequency, rate, timing, or extent of colonization of a host tissue is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005284 ! altered colonization of host tissue created_by: Jesus creation_date: 2016-08-16T01:09:04Z [Term] id: OMP:0005287 name: abolished colonization of host tissue def: "A decreased colonization of host tissue phenotype where colonization of a host tissue is abolished." [OMP:JG] is_a: OMP:0005283 ! absence of colonization of host tissue is_a: OMP:0005286 ! decreased colonization of host tissue created_by: Jesus creation_date: 2016-08-16T01:09:35Z [Term] id: OMP:0005288 name: colonization of tissue in an immunocompromised host phenotype def: "A colonization of a host phenotype that deals with the ability of a microbe to colonize tissue of an immunocompromised host." [OMP:JG] is_a: OMP:0005281 ! colonization of host tissue phenotype created_by: Jesus creation_date: 2016-08-16T01:46:42Z [Term] id: OMP:0005289 name: presence of colonization of tissue in an immunocompromised host def: "A colonization of tissue in an immunocompromised host phenotype where a microbe is able to colonize tissue of an immunocompromised host." [OMP:JG] is_a: OMP:0005288 ! colonization of tissue in an immunocompromised host phenotype created_by: Jesus creation_date: 2016-08-16T01:47:48Z [Term] id: OMP:0005290 name: absence of colonization of tissue in an immunocompromised host def: "A colonization of tissue in an immunocompromised host phenotype where a microbe is unable to colonize tissue of an immunocompromised host." [OMP:JG] is_a: OMP:0005288 ! colonization of tissue in an immunocompromised host phenotype created_by: Jesus creation_date: 2016-08-16T01:48:23Z [Term] id: OMP:0005291 name: altered colonization of tissue in an immunocompromised host def: "A colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue of an immunocompromised host is altered relative to a designated control." [OMP:JG] is_a: OMP:0005288 ! colonization of tissue in an immunocompromised host phenotype created_by: Jesus creation_date: 2016-08-16T01:49:00Z [Term] id: OMP:0005292 name: increased colonization of tissue in an immunocompromised host def: "An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue in an immunocompromised host is increased relative to a designated control." [OMP:JG] is_a: OMP:0005291 ! altered colonization of tissue in an immunocompromised host created_by: Jesus creation_date: 2016-08-16T01:49:41Z [Term] id: OMP:0005293 name: decreased colonization of tissue in an immunocompromised host def: "An altered colonization of tissue in an immunocompromised host phenotype where the frequency rate, timing, or extent of colonization of tissue is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005291 ! altered colonization of tissue in an immunocompromised host created_by: Jesus creation_date: 2016-08-16T01:50:17Z [Term] id: OMP:0005294 name: abolished colonization of tissue in an immunocompromised host def: "A decreased colonization of tissue in an immunocompromised host phenotype where colonization is abolished." [OMP:JG] is_a: OMP:0005290 ! absence of colonization of tissue in an immunocompromised host is_a: OMP:0005293 ! decreased colonization of tissue in an immunocompromised host created_by: Jesus creation_date: 2016-08-16T01:50:45Z [Term] id: OMP:0005295 name: colonization of mouse tissue def: "A colonization of host tissue phenotype related to the ability of a microbe to colonize mouse tissue." [OMP:JG] is_a: OMP:0005281 ! colonization of host tissue phenotype created_by: Jesus creation_date: 2016-08-29T15:32:17Z [Term] id: OMP:0005296 name: presence of colonization of mouse tissue def: "A colonization of mouse tissue phenotype where a microbe is able to colonize mouse tissue." [OMP:JG] is_a: OMP:0005282 ! presence of colonization of host tissue is_a: OMP:0005295 ! colonization of mouse tissue created_by: Jesus creation_date: 2016-08-29T15:34:02Z [Term] id: OMP:0005297 name: absence of colonization of mouse tissue def: "A colonization of mouse tissue phenotype where a microbe is unable to colonize mouse tissue." [OMP:JG] is_a: OMP:0005283 ! absence of colonization of host tissue is_a: OMP:0005295 ! colonization of mouse tissue created_by: Jesus creation_date: 2016-08-29T15:34:47Z [Term] id: OMP:0005298 name: altered colonization of mouse tissue def: "A colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is altered relative to a designated control." [OMP:JG] is_a: OMP:0005284 ! altered colonization of host tissue is_a: OMP:0005295 ! colonization of mouse tissue created_by: Jesus creation_date: 2016-08-29T15:35:22Z [Term] id: OMP:0005299 name: increased colonization of mouse tissue def: "An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is increased relative to a designated control." [OMP:JG] is_a: OMP:0005298 ! altered colonization of mouse tissue created_by: Jesus creation_date: 2016-08-29T15:36:17Z [Term] id: OMP:0005300 name: decreased colonization of mouse tissue def: "An altered colonization of mouse tissue phenotype where the frequency rate, timing, or extent of colonization is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005298 ! altered colonization of mouse tissue created_by: Jesus creation_date: 2016-08-29T15:36:52Z [Term] id: OMP:0005301 name: abolished colonization of mouse tissue def: "A decreased colonization of mouse tissue phenotype where colonization is abolished." [OMP:JG] is_a: OMP:0005297 ! absence of colonization of mouse tissue is_a: OMP:0005300 ! decreased colonization of mouse tissue created_by: Jesus creation_date: 2016-08-29T15:37:32Z [Term] id: OMP:0005302 name: colonization of tissue in an immunocompromised mouse phenotype def: "A colonization of host tissue phenotype that related to the ability of a microbe to colonize tissue of an immunocompromised mouse." [OMP:JG] is_a: OMP:0005288 ! colonization of tissue in an immunocompromised host phenotype created_by: Jesus creation_date: 2016-08-30T11:28:41Z [Term] id: OMP:0005303 name: presence of colonization of tissue in an immunocompromised mouse def: "A colonization of tissue in an immunocompromised mouse phenotype where a microbe is able to colonize the tissue of an immunocompromised mouse." [OMP:JG] is_a: OMP:0005302 ! colonization of tissue in an immunocompromised mouse phenotype created_by: Jesus creation_date: 2016-08-30T11:31:08Z [Term] id: OMP:0005304 name: absence of colonization of tissue in an immunocompromised mouse def: "A colonization of immunocompromised mouse tissue phenotype where a microbe is unable to colonize the tissue of an immunocompromised mouse." [OMP:JG] is_a: OMP:0005302 ! colonization of tissue in an immunocompromised mouse phenotype created_by: Jesus creation_date: 2016-08-30T11:32:11Z [Term] id: OMP:0005305 name: altered colonization of tissue in an immunocompromised mouse def: "A colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control." [OMP:JG] is_a: OMP:0005302 ! colonization of tissue in an immunocompromised mouse phenotype created_by: Jesus creation_date: 2016-08-30T11:33:51Z [Term] id: OMP:0005306 name: increased colonization of tissue in an immunocompromised mouse def: "An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control." [OMP:JG] is_a: OMP:0005305 ! altered colonization of tissue in an immunocompromised mouse created_by: Jesus creation_date: 2016-08-30T11:35:33Z [Term] id: OMP:0005307 name: decreased colonization of tissue in an immunocompromised mouse def: "An altered colonization of tissue in an immunocompromised mouse phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005305 ! altered colonization of tissue in an immunocompromised mouse created_by: Jesus creation_date: 2016-08-30T11:35:57Z [Term] id: OMP:0005308 name: abolished colonization of tissue in an immunocompromised mouse def: "A decreased colonization of tissue in an immunocompromised mouse phenotype where colonization is abolished." [OMP:JG] is_a: OMP:0005307 ! decreased colonization of tissue in an immunocompromised mouse created_by: Jesus creation_date: 2016-08-30T11:36:46Z [Term] id: OMP:0005309 name: colonization of rabbit tissue phenotype def: "A colonization of host tissue phenotype related to the ability of a microbe to colonize rabbit tissue." [OMP:JG] is_a: OMP:0005281 ! colonization of host tissue phenotype created_by: Jesus creation_date: 2016-08-30T11:43:47Z [Term] id: OMP:0005310 name: presence of colonization of rabbit tissue def: "A colonization of rabbit tissue phenotype where a microbe is able to colonize rabbit tissue." [OMP:JG] is_a: OMP:0005282 ! presence of colonization of host tissue is_a: OMP:0005309 ! colonization of rabbit tissue phenotype created_by: Jesus creation_date: 2016-08-30T11:44:31Z [Term] id: OMP:0005311 name: absence of colonization of rabbit tissue def: "A colonization of rabbit tissue phenotype where a microbe is unable to colonize rabbit tissue." [OMP:JG] is_a: OMP:0005283 ! absence of colonization of host tissue is_a: OMP:0005309 ! colonization of rabbit tissue phenotype created_by: Jesus creation_date: 2016-08-30T11:45:59Z [Term] id: OMP:0005312 name: altered colonization of rabbit tissue def: "A colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control." [OMP:JG] is_a: OMP:0005284 ! altered colonization of host tissue is_a: OMP:0005309 ! colonization of rabbit tissue phenotype created_by: Jesus creation_date: 2016-08-30T11:46:52Z [Term] id: OMP:0005313 name: increased colonization of rabbit tissue def: "An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization in rabbit tissue is increased relative to a designated control." [OMP:JG] is_a: OMP:0005312 ! altered colonization of rabbit tissue created_by: Jesus creation_date: 2016-08-30T11:47:21Z [Term] id: OMP:0005314 name: decreased colonization of rabbit tissue def: "An altered colonization of rabbit tissue phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005312 ! altered colonization of rabbit tissue created_by: Jesus creation_date: 2016-08-30T11:47:50Z [Term] id: OMP:0005315 name: abolished colonization of rabbit tissue def: "A decreased colonization of rabbit tissue phenotype where the colonization of rabbit tissue is abolished." [OMP:JG] is_a: OMP:0005311 ! absence of colonization of rabbit tissue is_a: OMP:0005314 ! decreased colonization of rabbit tissue created_by: Jesus creation_date: 2016-08-30T11:48:21Z [Term] id: OMP:0005316 name: colonization of tissue in an immunocompromised rabbit phenotype def: "A colonization of host tissue phenotype related to the ability of a microbe to colonize tissue in an immunocompromised rabbit." [OMP:JG] is_a: OMP:0005288 ! colonization of tissue in an immunocompromised host phenotype created_by: Jesus creation_date: 2016-08-30T11:49:36Z [Term] id: OMP:0005317 name: presence of colonization of tissue in an immunocompromised rabbit def: "A colonization of tissue in an immunocompromised rabbit phenotype where a microbe is able to colonize tissue of an immunocompromised rabbit." [OMP:JG] is_a: OMP:0005316 ! colonization of tissue in an immunocompromised rabbit phenotype created_by: Jesus creation_date: 2016-08-30T11:50:36Z [Term] id: OMP:0005318 name: absence of colonization of tissue in an immunocompromised rabbit def: "A colonization of tissue in an immunocompromised rabbit phenotype a microbe is unable to colonize the tissue of an immunocompromised rabbit." [OMP:JG] is_a: OMP:0005316 ! colonization of tissue in an immunocompromised rabbit phenotype created_by: Jesus creation_date: 2016-08-30T11:52:27Z [Term] id: OMP:0005319 name: altered colonization of tissue in an immunocompromised rabbit def: "A colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control." [OMP:JG] is_a: OMP:0005316 ! colonization of tissue in an immunocompromised rabbit phenotype created_by: Jesus creation_date: 2016-08-30T11:52:54Z [Term] id: OMP:0005320 name: increased colonization of tissue in an immunocompromised rabbit def: "An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control." [OMP:JG] is_a: OMP:0005319 ! altered colonization of tissue in an immunocompromised rabbit created_by: Jesus creation_date: 2016-08-30T11:55:35Z [Term] id: OMP:0005321 name: decreased colonization of tissue in an immunocompromised rabbit def: "An altered colonization of tissue in an immunocompromised rabbit phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005319 ! altered colonization of tissue in an immunocompromised rabbit created_by: Jesus creation_date: 2016-08-30T11:56:07Z [Term] id: OMP:0005322 name: abolished colonization of tissue in an immunocompromised rabbit def: "A decreased colonization of tissue in an immunocompromised rabbit phenotype where colonization is abolished." [OMP:JG] is_a: OMP:0005321 ! decreased colonization of tissue in an immunocompromised rabbit created_by: Jesus creation_date: 2016-08-30T11:56:47Z [Term] id: OMP:0005323 name: altered cell motility by swarming def: "A cell motility by swarming phenotype where the frequency, rate, timing, or extent of swarming is altered relative to a designated control." [OMP:JG] is_a: OMP:0007001 ! altered motility created_by: jguzman creation_date: 2016-09-19T14:01:13Z [Term] id: OMP:0005324 name: altered cell motility by swimming def: "A cell motility by swimming phenotype where the frequency, rate, timing, or extent of swimming is altered relative to a designated control." [OMP:JG] is_a: OMP:0007001 ! altered motility created_by: jguzman creation_date: 2016-09-19T14:02:03Z [Term] id: OMP:0005325 name: agar invasion phenotype def: "An organismal growth phenotype relating to the ability of a microbe to penetrate agar media during growth." [OMP:JG] is_a: OMP:0000174 ! growth phenotype created_by: Jesus creation_date: 2016-09-23T16:58:54Z [Term] id: OMP:0005326 name: presence of agar invasion def: "An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth." [OMP:JG] synonym: "invasive growth" NARROW [APO:0000028] is_a: OMP:0005325 ! agar invasion phenotype created_by: Jesus creation_date: 2016-09-23T17:03:49Z [Term] id: OMP:0005327 name: absence of agar invasion def: "An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth." [OMP:JG] is_a: OMP:0005325 ! agar invasion phenotype created_by: Jesus creation_date: 2016-09-23T17:05:49Z [Term] id: OMP:0005328 name: altered agar invasion def: "An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control." [OMP:JG] is_a: OMP:0005325 ! agar invasion phenotype created_by: Jesus creation_date: 2016-09-23T17:07:22Z [Term] id: OMP:0005329 name: increased agar invasion def: "An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control." [OMP:JG] is_a: OMP:0005328 ! altered agar invasion created_by: Jesus creation_date: 2016-09-23T17:07:59Z [Term] id: OMP:0005330 name: decreased agar invasion phenotype def: "An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005328 ! altered agar invasion created_by: Jesus creation_date: 2016-09-23T17:08:25Z [Term] id: OMP:0005331 name: abolished agar invasion def: "A decreased agar invasion phenotype where the ability to invade agar media is abolished." [OMP:JG] is_a: OMP:0005330 ! decreased agar invasion phenotype created_by: Jesus creation_date: 2016-09-23T17:08:54Z [Term] id: OMP:0005332 name: protein localization phenotype def: "A cellular component phenotype relating to the localization or placement of proteins within a cell." [APO:0000209, OMP:JG] xref: APO:0000209 "protein/peptide distribution" is_a: OMP:0007197 ! cellular component phenotype created_by: Jesus creation_date: 2016-10-05T14:17:25Z [Term] id: OMP:0005333 name: altered protein localization def: "A protein localization phenotype in which the localization or placement of proteins within a cell is altered relative to a designated control." [OMP:JG] is_a: OMP:0005332 ! protein localization phenotype created_by: Jesus creation_date: 2016-10-05T14:18:53Z [Term] id: OMP:0005334 name: presence of protein localization def: "A protein localization phenotype where an organism, cell, or cells exhibit protein localization." [OMP:JG] is_a: OMP:0005332 ! protein localization phenotype created_by: Jesus creation_date: 2016-10-05T14:19:21Z [Term] id: OMP:0005335 name: absence of protein localization def: "A protein localization phenotype where an organism, cell, or cells lack protein localization." [OMP:JG] is_a: OMP:0005332 ! protein localization phenotype created_by: Jesus creation_date: 2016-10-05T14:19:51Z [Term] id: OMP:0005336 name: cell lysis phenotype def: "A cell death phenotype relating to cytolysis, which is the rupture of cell membranes and the loss of cytoplasm. In some microorganisms, the integrity of the cell wall is also compromised." [FYPO:0002488, GO:\:0019835, OMP:JG] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0007308 ! cell death phenotype created_by: Jesus creation_date: 2016-10-31T13:27:46Z [Term] id: OMP:0005337 name: absence of cell lysis def: "A cell lysis phenotype where cytolysis doesn't occur." [OMP:JG] is_a: OMP:0005336 ! cell lysis phenotype created_by: Jesus creation_date: 2016-10-31T13:29:12Z [Term] id: OMP:0005338 name: presence of cell lysis def: "A cell lysis phenotype where cytolysis occurs." [OMP:JG] is_a: OMP:0005336 ! cell lysis phenotype created_by: Jesus creation_date: 2016-10-31T13:30:04Z [Term] id: OMP:0005339 name: altered cell lysis def: "A cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is altered relative to a designated control." [OMP:JG] is_a: OMP:0005336 ! cell lysis phenotype is_a: OMP:0007638 ! altered cell phenotype created_by: Jesus creation_date: 2016-10-31T13:30:56Z [Term] id: OMP:0005340 name: decreased cell lysis def: "An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005339 ! altered cell lysis created_by: Jesus creation_date: 2016-10-31T13:31:44Z [Term] id: OMP:0005341 name: abolished cell lysis def: "A decreased cell lysis phenotype where cytolysis is abolished." [OMP:JG] is_a: OMP:0005340 ! decreased cell lysis created_by: Jesus creation_date: 2016-10-31T13:32:41Z [Term] id: OMP:0005342 name: increased cell lysis def: "An altered cell lysis phenotype where the frequency, rate, timing, or extent of cytolysis is increased relative to a designated control." [OMP:JG] is_a: OMP:0005339 ! altered cell lysis created_by: Jesus creation_date: 2016-10-31T13:33:49Z [Term] id: OMP:0005343 name: organic aromatic compound resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organic aromatic compound." [OMP:JG] synonym: "CCCP (Carbonyl cyanide 3-chlorophenylhydrazone) resistance phenotype" NARROW [CHEBI:3259] synonym: "epinephrine resistance phenotype" NARROW [CHEBI:28918] synonym: "nigercin resistance phenotype" NARROW [CHEBI:7569] synonym: "norepinephrine resistance phenotype" NARROW [CHEBI:18357] synonym: "polymyxin B resistance phenotype" NARROW [CHEBI:8309] synonym: "procaine resistance phenotype" NARROW [CHEBI:8430] synonym: "propidium iodide resistance phenotype" NARROW [CHEBI:51240] synonym: "sulfamethizole resistance phenotype" NARROW [CHEBI:9331] synonym: "triclosan resistance phenotype" NARROW [CHEBI:164200] synonym: "vancomycin resistance phenotype" NARROW [CHEBI:28001] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: Jesus creation_date: 2016-10-31T13:40:40Z [Term] id: OMP:0005344 name: altered organic aromatic compound resistance def: "An organic aromatic compound resistance phenotype where resistance to an organic aromatic compound is altered relative to a designated control." [OMP:JG] is_a: OMP:0005343 ! organic aromatic compound resistance phenotype created_by: Jesus creation_date: 2016-10-31T13:45:41Z [Term] id: OMP:0005345 name: decreased resistance to organic aromatic compounds def: "An altered organic aromatic compound resistance phenotype where resistance to one or more is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005344 ! altered organic aromatic compound resistance created_by: Jesus creation_date: 2016-10-31T13:46:37Z [Term] id: OMP:0005346 name: abolished resistance to organic aromatic compounds def: "A decreased resistance to organic aromatic compounds phenotype where resistance to one or more organic aromatic compounds is abolished." [OMP:JG] is_a: OMP:0005345 ! decreased resistance to organic aromatic compounds created_by: Jesus creation_date: 2016-10-31T13:47:39Z [Term] id: OMP:0005347 name: increased resistance to organic aromatic compounds def: "An altered organic aromatic compound resistance phenotype where resistance to one or more organic aromatic compounds is increased relative to a designated control." [OMP:JG] is_a: OMP:0005344 ! altered organic aromatic compound resistance created_by: Jesus creation_date: 2016-10-31T13:48:38Z [Term] id: OMP:0005348 name: not resistant to organic aromatic compounds def: "An organic aromatic compound resistance phenotype where an organism or cell is sensitive to one or more organic aromatic compounds." [OMP:JG] is_a: OMP:0005343 ! organic aromatic compound resistance phenotype created_by: Jesus creation_date: 2016-10-31T13:49:36Z [Term] id: OMP:0005349 name: resistant to organic aromatic compounds def: "An organic aromatic compound resistance phenotype where an organism or cell is resistant to one or more organic aromatic compounds." [OMP:JG] is_a: OMP:0005343 ! organic aromatic compound resistance phenotype created_by: Jesus creation_date: 2016-10-31T13:50:26Z [Term] id: OMP:0005350 name: presence of mating def: "A mating phenotype where an organism uses the process of conjugation for sexual reproduction." [OMP:JG] is_a: OMP:0007412 ! mating phenotype created_by: Jesus creation_date: 2016-11-21T13:08:52Z [Term] id: OMP:0005351 name: absence of mating def: "A mating phenotype where an organism does not use the process of conjugation for sexual reproduction." [OMP:JG] is_a: OMP:0007412 ! mating phenotype created_by: Jesus creation_date: 2016-11-21T13:10:46Z [Term] id: OMP:0005352 name: altered mating def: "A mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is altered relative to a designated control." [OMP:JG] is_a: OMP:0007412 ! mating phenotype created_by: Jesus creation_date: 2016-11-21T13:11:47Z [Term] id: OMP:0005353 name: increased mating def: "An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is increased relative to a designated control." [OMP:JG] is_a: OMP:0005352 ! altered mating created_by: Jesus creation_date: 2016-11-21T13:13:40Z [Term] id: OMP:0005354 name: decreased mating def: "An altered mating phenotype where the frequency, rate, timing, or extent of sexual reproduction by conjugation is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005352 ! altered mating created_by: Jesus creation_date: 2016-11-21T13:14:33Z [Term] id: OMP:0005355 name: abolished mating def: "A decreased mating phenotype where sexual reproduction by conjugation is abolished." [OMP:JG] is_a: OMP:0005354 ! decreased mating created_by: Jesus creation_date: 2016-11-21T13:15:43Z [Term] id: OMP:0005356 name: mating efficiency phenotype def: "A sexual reproduction phenotype relating to the efficiency of mating, which is the proportion of cells within a population that are able to mate." [FYPO:0001147, OMP:JG] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nDepending on the assay used, a change in measured mating efficiency may reflect a change in conjugation frequency (see OMP:0007412 mating phenotype and its descendants) and/or a change in some other biological process such as sexual sporulation (see OMP:0007045 and its descendants). For this reason mating efficiency phenotype is not a child of mating phenotype, but instead a child of sexual reproduction phenotype (OMP:0007406). is_a: OMP:0007406 ! sexual reproduction phenotype created_by: Jesus creation_date: 2016-11-21T13:27:01Z [Term] id: OMP:0005357 name: altered mating efficiency def: "A mating efficiency phenotype where the efficiency of mating is altered relative to a designated control." [OMP:JG] is_a: OMP:0005356 ! mating efficiency phenotype created_by: Jesus creation_date: 2016-11-21T13:29:32Z [Term] id: OMP:0005358 name: increased mating efficiency def: "A mating efficiency phenotype where the efficiency of mating is increased relative to a designated control." [OMP:JG] is_a: OMP:0005357 ! altered mating efficiency created_by: Jesus creation_date: 2016-11-21T13:30:39Z [Term] id: OMP:0005359 name: decreased mating efficiency def: "A mating efficiency phenotype where the efficiency of mating is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005357 ! altered mating efficiency created_by: Jesus creation_date: 2016-11-21T13:32:39Z [Term] id: OMP:0005360 name: abolished mating efficiency def: "A decreased mating efficiency phenotype where mating is abolished." [OMP:JG] is_a: OMP:0005359 ! decreased mating efficiency created_by: Jesus creation_date: 2016-11-21T13:33:33Z [Term] id: OMP:0005361 name: osmotaxis phenotype def: "A taxis phenotype where the directed movement of a motile microbe is in response to an osmotic concentration gradient (formerly called osmolarity). Osmotaxis differs from chemotaxis in that during osmotaxis the microbe is responding to water activity not to the solute per se." [OMP:JG, PMID:3059348] is_a: OMP:0000004 ! taxis phenotype created_by: Jesus creation_date: 2016-12-20T12:48:52Z [Term] id: OMP:0005362 name: presence of osmotaxis def: "An osmotaxis phenotype where a motile microbe displays directed movement in response to an osmotic concentration gradient." [OMP:JG] is_a: OMP:0005361 ! osmotaxis phenotype created_by: Jesus creation_date: 2016-12-20T12:51:45Z [Term] id: OMP:0005363 name: absence of osmotaxis def: "An osmotaxis phenotype where a motile microbe doesn't display directed movement in response to an osmotic concentration gradient." [OMP:JG] is_a: OMP:0005361 ! osmotaxis phenotype created_by: Jesus creation_date: 2016-12-20T12:52:21Z [Term] id: OMP:0005364 name: presence of positive osmotaxis def: "A presence of osmotaxis phenotype where a motile microbe displays osmotaxis towards a higher osmotic concentration." [OMP:JG] is_a: OMP:0005362 ! presence of osmotaxis created_by: Jesus creation_date: 2016-12-20T12:53:34Z [Term] id: OMP:0005365 name: presence of negative osmotaxis def: "A presence of osmotaxis phenotype where a motile microbe displays osmotaxis away from a higher osmotic concentration." [OMP:JG] is_a: OMP:0005362 ! presence of osmotaxis created_by: Jesus creation_date: 2016-12-20T12:54:30Z [Term] id: OMP:0005366 name: abolished osmotaxis def: "A decreased osmotaxis phenotype where osmotaxis by a motile microbe is abolished." [OMP:JG] is_a: OMP:0005363 ! absence of osmotaxis is_a: OMP:0005372 ! decreased osmotaxis created_by: Jesus creation_date: 2016-12-20T12:59:07Z [Term] id: OMP:0005367 name: absence of negative osmotaxis def: "An absence of osmotaxis phenotype where an organism doesn't display negative osmotaxis." [OMP:JG] is_a: OMP:0005363 ! absence of osmotaxis created_by: Jesus creation_date: 2016-12-20T13:00:12Z [Term] id: OMP:0005368 name: abolished negative osmotaxis def: "A decreased negative osmotaxis phenotype where negative osmotaxis by a motile microbe is abolished." [OMP:JG] is_a: OMP:0005367 ! absence of negative osmotaxis is_a: OMP:0007514 ! decreased negative osmotaxis created_by: Jesus creation_date: 2016-12-20T13:02:31Z [Term] id: OMP:0005369 name: absence of positive osmotaxis def: "A presence of osmotaxis phenotype where an organism doesn't display positive osmotaxis." [OMP:JG] is_a: OMP:0005363 ! absence of osmotaxis created_by: Jesus creation_date: 2016-12-20T13:03:16Z [Term] id: OMP:0005370 name: abolished positive osmotaxis def: "A decreased positive osmotaxis phenotype where positive osmotaxis by a motile microbe is abolished." [OMP:JG] is_a: OMP:0005369 ! absence of positive osmotaxis is_a: OMP:0007515 ! decreased positive osmotaxis created_by: Jesus creation_date: 2016-12-20T13:04:08Z [Term] id: OMP:0005371 name: altered osmotaxis def: "An osmotaxis phenotype where directed movement of a motile microbe in response to an osmotic concentration gradient is altered relative to a designated control." [OMP:JG] is_a: OMP:0005361 ! osmotaxis phenotype is_a: OMP:0007127 ! altered taxis created_by: Jesus creation_date: 2016-12-20T13:05:17Z [Term] id: OMP:0005372 name: decreased osmotaxis def: "An altered osmotaxis phenotype where osmotaxis by a motile microbe is decreased relative to a designated control." [OMP:JG] is_a: OMP:0005371 ! altered osmotaxis created_by: Jesus creation_date: 2016-12-20T13:06:09Z [Term] id: OMP:0005373 name: sporulation frequency phenotype def: "A cell population phenotype relating to the fraction of cells in a population that form spores under sporulation-inducing conditions." [OMP:JG] is_a: OMP:0000091 ! sporulation phenotype is_a: OMP:0007006 ! population phenotype created_by: Jesus creation_date: 2016-12-20T13:17:56Z [Term] id: OMP:0005374 name: increased osmotaxis def: "An altered osmotaxis phenotype where osmotaxis by a motile microbe is increased relative to a designated control." [OMP:JG] is_a: OMP:0005371 ! altered osmotaxis created_by: Jesus creation_date: 2016-12-20T13:08:00Z [Term] id: OMP:0005375 name: increased negative osmotaxis def: "An increased osmotaxis phenotype where negative osmotaxis by a motile microbe is increased relative to a designated control." [OMP:JG] is_a: OMP:0005374 ! increased osmotaxis created_by: Jesus creation_date: 2016-12-20T13:08:34Z [Term] id: OMP:0005376 name: increased positive osmotaxis def: "An increased osmotaxis phenotype where positive osmotaxis by a motile microbe is increased relative to a designated control." [OMP:JG] is_a: OMP:0005374 ! increased osmotaxis created_by: Jesus creation_date: 2016-12-20T13:09:07Z [Term] id: OMP:0005377 name: sexual sporulation frequency def: "A sporulation frequency phenotype relating to the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions." [APO:0000044, OMP:JG] synonym: "sporulation efficiency" EXACT [APO:0000044] is_a: OMP:0005373 ! sporulation frequency phenotype created_by: Jesus creation_date: 2016-12-20T13:23:48Z [Term] id: OMP:0005378 name: altered sexual sporulation frequency def: "A sexual sporulation efficiency phenotype where the efficiency of sexual sporulation is altered relative to a designated control." [OMP:JG] synonym: "altered sexual sporulation efficiency" EXACT [] is_a: OMP:0005377 ! sexual sporulation frequency created_by: Jesus creation_date: 2016-12-20T13:27:44Z [Term] id: OMP:0005379 name: increased sexual sporulation frequency def: "An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is increased relative to a designated control." [OMP:JG] synonym: "increased sexual sporulation efficiency" EXACT [] is_a: OMP:0005378 ! altered sexual sporulation frequency created_by: Jesus creation_date: 2016-12-20T13:32:18Z [Term] id: OMP:0005380 name: decreased sexual sporulation frequency def: "An altered sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is decreased relative to a designated control." [OMP:JG] synonym: "decreased sexual sporulation efficiency" EXACT [] is_a: OMP:0005378 ! altered sexual sporulation frequency created_by: Jesus creation_date: 2016-12-20T13:33:55Z [Term] id: OMP:0005381 name: abolished sexual sporulation frequency def: "A decreased sexual sporulation frequency phenotype where the fraction of cells in a population that undergo meiosis and forms spores under sporulation-inducing conditions is below the limits of detection." [OMP:JG] synonym: "abolished sexual sporulation efficiency" EXACT [] is_a: OMP:0005380 ! decreased sexual sporulation frequency created_by: Jesus creation_date: 2016-12-20T13:35:03Z [Term] id: OMP:0005382 name: tail morphology phenotype def: "A virion morphology phenotype that is referring to the form and structure of tails on viral particles." [OMP:dr] is_a: OMP:0007541 ! virion morphology phenotype created_by: MiLaptop creation_date: 2017-11-03T21:07:19Z [Term] id: OMP:0005383 name: presence of tail def: "A tail morphology phenotype where the virus has a tail present." [] is_a: OMP:0005382 ! tail morphology phenotype created_by: MiLaptop creation_date: 2017-11-03T21:10:23Z [Term] id: OMP:0005384 name: presence of short tail def: "A tail length phenotype where the maximum length of the tail is 17 nm." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:15:15Z [Term] id: OMP:0005385 name: presence of normal tail def: "A tail length phenotype ranging from 18 nm to 109 nm." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:17:21Z [Term] id: OMP:0005386 name: capsid morphology phenotype def: "A virion morphology phenotype related to the form and structure of the capsid of the virion." [] is_a: OMP:0007541 ! virion morphology phenotype created_by: MiLaptop creation_date: 2017-11-03T21:01:58Z [Term] id: OMP:0005387 name: presence of long tail def: "A tail length phenotype ranging from 110 nm to 300 nm." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:19:23Z [Term] id: OMP:0005388 name: presence of contractile tail def: "A phage tail phenotype where the tail contracts to inject its DNA into the host." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:20:42Z [Term] id: OMP:0005389 name: presence of non-contractile tail def: "A phage tail phenotype where the tail does not contract to inject its DNA into the host." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:33:18Z [Term] id: OMP:0005390 name: presence of a single tail def: "A phage tail phenotype where only one tail per virion is present." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:34:28Z [Term] id: OMP:0005391 name: presence of multiple tails def: "A phage tail phenotype where more than one tail per virion is present." [] is_a: OMP:0005383 ! presence of tail created_by: MiLaptop creation_date: 2017-11-03T21:35:33Z [Term] id: OMP:0005392 name: absence of tail def: "A tail morphology phenotype where the virus has no tail." [] is_a: OMP:0005382 ! tail morphology phenotype created_by: MiLaptop creation_date: 2017-11-03T21:36:16Z [Term] id: OMP:0005393 name: pseudo tail morphology phenotype def: "A virion morphology phenotype where the isolated virions do not show presence of a tail, but rather, the tail is only seen during infection or through some other manipulation of the virion." [] is_a: OMP:0007541 ! virion morphology phenotype created_by: MiLaptop creation_date: 2017-11-03T21:39:58Z [Term] id: OMP:0005394 name: polyhedral shape def: "A capsid morphology phenotype where the capsid is shaped like a polyhedron which is a solid formed by plane faces." [] is_a: OMP:0005386 ! capsid morphology phenotype created_by: MiLaptop creation_date: 2017-11-03T21:42:47Z [Term] id: OMP:0005395 name: icosahedral def: "A capsid morphology phenotype where the capsid is shaped like an icosahedron, which is a polyhedron with 20 faces." [] is_a: OMP:0005394 ! polyhedral shape created_by: MiLaptop creation_date: 2017-11-03T21:45:08Z [Term] id: OMP:0005396 name: isometric def: "A capsid morphology phenotype where the capsid is shaped isometrically which is a shape that is characterized by equality of measure." [] is_a: OMP:0005394 ! polyhedral shape created_by: MiLaptop creation_date: 2017-11-03T21:52:04Z [Term] id: OMP:0005397 name: octahedral def: "A capsid morphology phenotype where the capsid is shaped like an octahedron which is a polyhedron with 8 plane faces." [] is_a: OMP:0005394 ! polyhedral shape created_by: MiLaptop creation_date: 2017-11-03T21:53:27Z [Term] id: OMP:0005398 name: dodecahedral def: "A capsid morphology phenotype where the capsid is shaped like a dodecahedron which is a polyhedron with 12 plane faces." [] is_a: OMP:0005394 ! polyhedral shape created_by: MiLaptop creation_date: 2017-11-03T21:55:20Z [Term] id: OMP:0006000 name: secondary metabolite production phenotype def: "A small molecule biosynthesis phenotype where an organism produces a secondary metabolite, which is a compound not directly involved in normal growth, development or reproduction." [APO:0000292, OMP:TCK] is_a: OMP:0000310 ! small molecule biosynthesis phenotype created_by: tkveton creation_date: 2015-06-09T15:06:53Z [Term] id: OMP:0006001 name: altered chromosome segregation def: "A chromosome segregation phenotype where the frequency, rate, timing, or extent of chromosome segregation is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005047 ! chromosome segregation phenotype is_a: OMP:0007351 ! altered biological process intersection_of: OMP:0005047 ! chromosome segregation phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: jonathanherrera creation_date: 2014-07-24T14:14:37Z [Term] id: OMP:0006002 name: altered homologous recombination def: "A homologous recombination phenotype where the frequency, rate, timing, or extent of recombination is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005042 ! homologous recombination phenotype created_by: jonathanherrera creation_date: 2014-07-24T15:04:15Z [Term] id: OMP:0006003 name: altered gene silencing def: "A gene silencing phenotype where the frequency, rate, timing, or extent of gene silencing is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005046 ! gene silencing phenotype created_by: jonathanherrera creation_date: 2014-07-24T15:10:50Z [Term] id: OMP:0006004 name: increased budding def: "An altered budding phenotype where the rate, frequency, timing, or extent of budding is increased relative to a designated control." [OMP:WAM] synonym: "increased budding index" EXACT [] is_a: OMP:0006035 ! altered budding created_by: jonathanherrera creation_date: 2014-03-26T21:33:14Z [Term] id: OMP:0006005 name: altered site-specific recombination def: "A site specific recombination phenotype where the frequency, rate, timing, or extent of site-specific recombination is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005043 ! site-specific recombination phenotype created_by: jonathanherrera creation_date: 2014-07-24T15:21:56Z [Term] id: OMP:0006006 name: decreased budding def: "An altered budding phenotype where the rate, frequency, timing, or extent of budding is decreased relative to a designated control." [OMP:WAM] synonym: "decreased budding index" EXACT [] is_a: OMP:0006035 ! altered budding created_by: jonathanherrera creation_date: 2014-03-26T21:33:14Z [Term] id: OMP:0006007 name: altered heterocyst formation def: "A heterocyst formation phenotype where the rate, frequency, timing, or extent of heterocyst formation is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000092 ! heterocyst formation phenotype is_a: OMP:0007352 ! altered cell development created_by: jonathanherrera creation_date: 2014-07-24T16:24:44Z [Term] id: OMP:0006008 name: photosynthesis phenotype def: "A phototrophic phenotype where light is used as an energy source to fix carbon to create chemical energy in the form of carbohydrate molecules." [OMP:JCH] is_a: OMP:0007064 ! phototrophic phenotype created_by: jonathanherrera creation_date: 2014-04-01T14:18:12Z [Term] id: OMP:0006009 name: altered myxospore formation def: "A myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000096 ! myxospore formation phenotype is_a: OMP:0007145 ! altered asexual sporulation intersection_of: OMP:0000096 ! myxospore formation phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: jonathanherrera creation_date: 2014-07-24T16:26:38Z [Term] id: OMP:0006010 name: altered pilus phenotype def: "A pilus phenotype where the morphology, number, or location of a pilus is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000084 ! pilus morphology phenotype created_by: jonathanherrera creation_date: 2014-07-24T16:28:24Z [Term] id: OMP:0006011 name: lantibiotic resistance phenotype def: "A bacteriocin resistance phenotype related to resistance or sensitivity to peptides that contain the thioether amino acids lanthionine or methyllanthionine, and the unsaturated amino acids dehydroalanine and 2-aminoisobutyric acid." [CHEBI:71644, OMP:WAM] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "lantibiotic sensitivity phenotype" RELATED [] is_a: OMP:0006027 ! bacteriocin resistance phenotype created_by: jonathanherrera creation_date: 2014-04-30T22:47:51Z [Term] id: OMP:0006012 name: decreased resistance to lantibiotic def: "A lantibiotic resistance phenotype where resistance is decreased relative to a designated control." [OMP:WAM] synonym: "increased sensitivity to lantibiotic" RELATED [] is_a: OMP:0007139 ! altered lantibiotic resistance phenotype created_by: jonathanherrera creation_date: 2014-04-30T22:48:59Z [Term] id: OMP:0006013 name: altered transposable element transposition phenotype def: "A transposable element transposition phenotype where the frequency, rate, timing, or extent of transposable element transposition is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005059 ! transposable element transposition phenotype created_by: jonathanherrera creation_date: 2014-07-24T16:30:53Z [Term] id: OMP:0006014 name: increased resistance to lantibiotic def: "A lantibiotic resistance phenotype where resistance is increased relative to a designated control." [OMP:WAM] synonym: "decreased sensitivity to lantibiotic" RELATED [] is_a: OMP:0007139 ! altered lantibiotic resistance phenotype created_by: jonathanherrera creation_date: 2014-04-30T22:48:59Z [Term] id: OMP:0006015 name: presence of transposable element transposition def: "A transposable element transposition phenotype where a cell or cells have transposition of transposable elements." [OMP:WAM] is_a: OMP:0005059 ! transposable element transposition phenotype created_by: jonathanherrera creation_date: 2014-07-24T16:34:28Z [Term] id: OMP:0006016 name: absence of transposable element transposition def: "A transposable element transposition phenotype where a cell or cells lack transposition of transposable elements." [OMP:WAM] is_a: OMP:0005059 ! transposable element transposition phenotype created_by: jonathanherrera creation_date: 2014-07-24T16:34:28Z [Term] id: OMP:0006017 name: altered aminoglycoside resistance def: "An aminoglycoside resistance phenotype where resistance to an aminoglycoside compound is altered relative to a designated control." [OMP:JCH] is_a: OMP:0006056 ! aminoglycoside resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:04:53Z [Term] id: OMP:0006018 name: altered aminopyrimidine resistance def: "An aminopyrimidine resistance phenotype where resistance to an aminopyrimidine compound is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000331 ! aminopyrimidine resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:13:02Z [Term] id: OMP:0006019 name: altered azole resistance def: "An azole resistance phenotype where resistance to an azole compound is altered relative to a designated control." [OMp:JCH] is_a: OMP:0006028 ! azole resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:20:23Z [Term] id: OMP:0006020 name: altered bacteriocin resistance def: "A bacteriocin resistance phenotype where resistance to a bacteriocin is altered relative to a designated control." [OMP:JCH] is_a: OMP:0006027 ! bacteriocin resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:21:28Z [Term] id: OMP:0006021 name: altered beta-lactam resistance def: "A beta-lactam resistance phenotype where resistance to a beta-lactam compound is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000336 ! beta-lactam resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:26:03Z [Term] id: OMP:0006022 name: nutrient utilization phenotype def: "A microbial phenotype that affects the utilization of a nutrient, which is a substance used for biosynthesis or energy release." [ISBN:9780073402406] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000000 ! microbial phenotype created_by: jonathanherrera creation_date: 2013-09-10T14:40:06Z [Term] id: OMP:0006023 name: carbon source utilization phenotype def: "A nutrient utilization phenotype where the nutrient is being used as a source of carbon." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "acetate" NARROW [] synonym: "glucosamine" NARROW [] synonym: "glucose" NARROW [] synonym: "glycerol" NARROW [] synonym: "maltose" NARROW [] synonym: "N-acetyl glucosamine" NARROW [] synonym: "succinate " NARROW [] is_a: OMP:0006022 ! nutrient utilization phenotype created_by: jonathanherrera creation_date: 2013-09-10T17:51:21Z [Term] id: OMP:0006024 name: heterotrophic def: "A carbon source utilization phenotype where an organism uses organic molecules as the carbon source." [ISBN:9780073402406, OMP:DAS] is_a: OMP:0006023 ! carbon source utilization phenotype created_by: jonathanherrera creation_date: 2013-09-10T18:39:02Z [Term] id: OMP:0006025 name: altered chloramphenicol resistance def: "A chloramphenicol resistance phenotype where resistance to chloramphenicol is altered relative to a designated control." [OMP:JCH] is_a: OMP:0006066 ! chloramphenicol resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:39:51Z [Term] id: OMP:0006026 name: nitrogen source utilization phenotype def: "A nutrient utilization phenotype where the nutrient is being utilized as a source of nitrogen." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "NH4Cl (MOPS)" NARROW [] is_a: OMP:0006022 ! nutrient utilization phenotype created_by: jonathanherrera creation_date: 2013-09-10T17:51:21Z [Term] id: OMP:0006027 name: bacteriocin resistance phenotype def: "An antimicrobial peptide resistance phenotype related to resistance or sensitivity to bacteriocins, which are polypeptides synthesized by specific strains of bacteria that are active against other cells of the same or different species." [CHEBI:48081, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "bacteriocin sensitivity phenotype" RELATED [] synonym: "colicins resistance phenotype" NARROW [GO:0015468] synonym: "fusidic acid resistance phenotype" NARROW [CHEBI:29013] synonym: "iantibiotic resistance phenotype" NARROW [CHEBI:71644] synonym: "microcin resistance phenotype" NARROW [CHEBI:64627] synonym: "nisin resistance phenotype" NARROW [ChEBI:71629] synonym: "subtilin resistance phenotype" NARROW [Bactibase:BAC045] synonym: "type A lantibiotic resistance phenotype" NARROW [CHEBI:71645] synonym: "type B lantibiotic resistance phenotype" NARROW [CHEBI:71647] xref: CHEBI:48081 "bacteriocin" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2013-10-04T16:57:43Z [Term] id: OMP:0006028 name: azole resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to heteromonocyclic organic compounds consisting of a five-membered mancude-ring containing nitrogen." [CHEBI:68452, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nAzoles can also contain one or more other non-carbon atoms, such as nitrogen, sulfur or oxygen. A mancude ring has the maximum number of noncumulative double bonds, e.g. benzene, indole. synonym: "azole sensitivity phenotype" RELATED [] synonym: "benomyl resistance phenotype" NARROW [CHEBI:3015] synonym: "fluconazole resistance phenotype" NARROW [CHEBI:46081] synonym: "itraconazole resistance phenotype" NARROW [CHEBI:6076] synonym: "ketoconazole resistance phenotype" NARROW [CHEBI:47519] synonym: "miconazole resistance phenotype" NARROW [CHEBI:6923] synonym: "posaconazole resistance phenotype" NARROW [CHEBI:64355] synonym: "thiabendazole resistance phenotype" NARROW [CHEBI:45979] synonym: "triazole resistance phenotype" NARROW [CHEBI:38597] synonym: "voriconazole resistance phenotype" NARROW [CHEBI:10023] xref: CHEBI:68452 "azole" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2013-10-10T19:15:32Z [Term] id: OMP:0006029 name: quinolone resistance phenotype def: "An antimicrobial compound resistance phenotype related to resistance or sensitivity to a quinolone: an organonitrogen heterocyclic compound whose structure contains a quinolone or quinolone-related structure." [CHEBI:23765, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nQuinolones are a class of quinolines, which are aromatic heterocyclic compounds that contain a benzene ring ortho fused to carbons 2 and 3 of a pyridine ring. synonym: "ciprofloxacin resistance phenotype" NARROW [CHEBI:100241] synonym: "dibucaine resistance phenotype" NARROW [CHEBI:247956] synonym: "doxorubicin resistance phenotype" NARROW [CHEBI:28748] synonym: "levofloxacin resistance phenotype" NARROW [CHEBI:63598] synonym: "nalidixic acid resistance phenotype" NARROW [CHEBI:100147] synonym: "norfloxacin resistance phenotype" NARROW [CHEBI:100246] synonym: "novobiocin resistance phenotype" NARROW [CHEBI:28368] synonym: "quinolines " BROAD [CHEBI:26513] synonym: "quinolone sensitivity phenotype" RELATED [] xref: CHEBI:23765 "quinolone" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2013-10-10T19:15:32Z [Term] id: OMP:0006030 name: dinitrogen utilization phenotype def: "A nitrogen source utilization phenotype where dinitrogen (N2) is the source of nitrogen." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "diatomic nitrogen utilization phenotype" RELATED [] synonym: "nitrogen fixation phenotype" RELATED [] is_a: OMP:0006026 ! nitrogen source utilization phenotype created_by: jonathanherrera creation_date: 2013-09-10T17:54:07Z [Term] id: OMP:0006031 name: altered macrolide resistance def: "A macrolide resistance phenotype where resistance to a macrolide compound is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000321 ! macrolide resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:40:33Z [Term] id: OMP:0006032 name: altered pteridine resistance def: "A pteridine resistance phenotype where resistance to a pteridine compound is altered relative to a designated control." [OMP:JCH] is_a: OMP:0007065 ! pteridine resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:42:30Z [Term] id: OMP:0006033 name: altered lifespan phenotype def: "An lifespan phenotype that is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000090 ! lifespan phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:52:43Z [Term] id: OMP:0006034 name: altered stress-induced mutagenesis def: "A stress-induced mutagenesis phenotype where the frequency, rate, timing, or extent of stress-induced mutagenesis is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005027 ! stress-induced mutagenesis phenotype created_by: jonathanherrera creation_date: 2014-07-24T17:57:37Z [Term] id: OMP:0006035 name: altered budding def: "A budding phenotype where the rate, frequency, timing, or extent of the process of budding is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000089 ! budding phenotype is_a: OMP:0007144 ! altered asexual reproduction created_by: jonathanherrera creation_date: 2014-07-24T18:10:38Z [Term] id: OMP:0006036 name: decreased resistance to macrolide def: "A macrolide compound resistance phenotype where resistance to a macrolide compound is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to macrolide" RELATED [] is_a: OMP:0006031 ! altered macrolide resistance created_by: jonathanherrera creation_date: 2013-10-11T17:35:04Z [Term] id: OMP:0006037 name: increased resistance to macrolide def: "A macrolide compound resistance phenotype where resistance to a macrolide compound is increased relative to a designated control." [OMP:JCH] synonym: "decreased sensitivity to macrolide" RELATED [] is_a: OMP:0006031 ! altered macrolide resistance created_by: jonathanherrera creation_date: 2013-10-11T17:35:04Z [Term] id: OMP:0006038 name: not resistant to macrolide def: "A macrolide compound resistance phenotype where an organism or cell is sensitive to one or more macrolide compounds." [OMP:JCH] synonym: "sensitivity to macrolide" RELATED [] is_a: OMP:0000321 ! macrolide resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:35:04Z [Term] id: OMP:0006039 name: resistant to macrolide def: "A macrolide compound resistance phenotype where an organism or cell is resistant to one or more macrolide compounds." [OMP:JCH] is_a: OMP:0000321 ! macrolide resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:35:04Z [Term] id: OMP:0006040 name: decreased resistance to quinolone def: "A quinolone compound resistance phenotype where resistance to a quinolone compound is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to quinoline" RELATED [] is_a: OMP:0005034 ! altered quinolone resistance created_by: jonathanherrera creation_date: 2013-10-11T17:38:00Z [Term] id: OMP:0006041 name: increased resistance to quinolone def: "A quinolone compound resistance phenotype where resistance to a quinolone compound is increased relative to a designated control." [OMP:JCH] synonym: "decreased sensitivity to quinoline" RELATED [] is_a: OMP:0005034 ! altered quinolone resistance created_by: jonathanherrera creation_date: 2013-10-11T17:38:00Z [Term] id: OMP:0006042 name: not resistant to quinolone def: "A quinoline compound resistance phenotype where an organism or cell is sensitive to one or more quinolone compounds." [OMp:JCH] synonym: "sensitivity to quinolone" RELATED [] is_a: OMP:0006029 ! quinolone resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:38:00Z [Term] id: OMP:0006043 name: resistant to quinolone def: "A quinoline compound resistance phenotype where an organism or cell is resistant to one or more quinolone compounds." [OMP:JCH] is_a: OMP:0006029 ! quinolone resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:38:00Z [Term] id: OMP:0006044 name: decreased resistance to beta-lactam def: "A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to beta-lactam" RELATED [] is_a: OMP:0006021 ! altered beta-lactam resistance created_by: jonathanherrera creation_date: 2013-10-11T17:40:34Z [Term] id: OMP:0006045 name: increased resistance to beta-lactam compound def: "A beta-lactam compound resistance phenotype where resistance to a beta-lactam compound is increased relative to a designated control." [OMP:JCH] synonym: "decreased sensitivity to beta-lactam" RELATED [] is_a: OMP:0006021 ! altered beta-lactam resistance created_by: jonathanherrera creation_date: 2013-10-11T17:40:34Z [Term] id: OMP:0006046 name: not resistant to beta-lactam def: "A beta-lactam compound resistance phenotype where an organism or cell is sensitive to one or more beta-lactam compounds." [OMP:JCH] synonym: "beta-lactam sensitivity" RELATED [] is_a: OMP:0000336 ! beta-lactam resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:40:34Z [Term] id: OMP:0006047 name: resistant to beta-lactam def: "An beta-lactam compound resistance phenotype where an organism or cell is resistant to one or more beta-lactam compounds." [OMP:JCH] is_a: OMP:0000336 ! beta-lactam resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:40:34Z [Term] id: OMP:0006048 name: decreased resistance to bacteriocin def: "An altered bacteriocin resistance phenotype where resistance is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to bacteriocin" RELATED [] is_a: OMP:0006020 ! altered bacteriocin resistance created_by: jonathanherrera creation_date: 2013-10-11T17:44:39Z [Term] id: OMP:0006049 name: increased resistance to bacteriocin def: "A bacteriocin compound resistance phenotype where resistance to a bacteriocin is increased relative to a designated control." [OMP:JCH] synonym: "decreased sensitivity to a bacteriocin" RELATED [] is_a: OMP:0006020 ! altered bacteriocin resistance created_by: jonathanherrera creation_date: 2013-10-11T17:44:39Z [Term] id: OMP:0006050 name: not resistant to bacteriocin def: "A bacteriocin resistance phenotype where an organism or cell is sensitive to one or more bacteriocins." [OMP:JCH] synonym: "bacteriocin sensitivity" RELATED [] is_a: OMP:0006027 ! bacteriocin resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:44:39Z [Term] id: OMP:0006051 name: resistant to bacteriocin def: "A bacteriocin resistance phenotype where an organism or cell is resistant to one or more bacteriocins." [OMP:JCH] is_a: OMP:0006027 ! bacteriocin resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:44:39Z [Term] id: OMP:0006052 name: decreased resistance to azole def: "An azole compound resistance phenotype where resistance to an azole compound is decreased relative to a designated control." [OMP:DAS] synonym: "increased sensitivity to azole" RELATED [] is_a: OMP:0006019 ! altered azole resistance created_by: jonathanherrera creation_date: 2013-10-11T17:45:44Z [Term] id: OMP:0006053 name: increased resistance to azole compound def: "An azole compound resistance phenotype where resistance to an azole compound is increased relative to a designated control." [OMP:DAS] synonym: "decreased sensitivity to azole" RELATED [] is_a: OMP:0006019 ! altered azole resistance created_by: jonathanherrera creation_date: 2013-10-11T17:45:44Z [Term] id: OMP:0006054 name: not resistant to azole def: "An azole compound resistance phenotype where an organism or cell is sensitive to one or more azole compounds." [OMP:DAS] synonym: "azole sensitivity" RELATED [] is_a: OMP:0006028 ! azole resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:45:44Z [Term] id: OMP:0006055 name: resistant to azole def: "An azole compound resistance phenotype where an organism or cell is resistant to one or more azole compounds." [OMP:DAS] is_a: OMP:0006028 ! azole resistance phenotype created_by: jonathanherrera creation_date: 2013-10-11T17:45:44Z [Term] id: OMP:0006056 name: aminoglycoside resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to a compound containing a cyclohexane ring with amino sugars." [CHEBI:47779, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "amikacin resistance phenotype" NARROW [CHEBI:2673] synonym: "aminoglycoside sensitivity phenotype" RELATED [] synonym: "gentamicin resistance phenotype" NARROW [CHEBI:5312] synonym: "hygromycin B resistance phenotype" NARROW [CHEBI:16976] synonym: "kanamycin resistance phenotype" NARROW [CHEBI:6104] synonym: "neomycin resistance phenotype" NARROW [CHEBI:7508] synonym: "spectinomycin resistance phenotype" NARROW [CHEBI:32158] synonym: "streptomycin resistance phenotype" NARROW [CHEBI:32158] synonym: "tobramycin resistance phenotype" NARROW [CHEBI:28864] xref: CHEBI:47779 "aminoglycoside" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2013-10-22T13:29:22Z [Term] id: OMP:0006057 name: decreased resistance to aminoglycoside def: "An altered aminoglycoside resistance phenotype where resistance to an aminoglycoside is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to aminoglycoside" RELATED [] is_a: OMP:0006017 ! altered aminoglycoside resistance created_by: jonathanherrera creation_date: 2013-10-22T19:24:20Z [Term] id: OMP:0006058 name: increased resistance to aminoglycoside def: "An altered aminoglycoside compound resistance phenotype where resistance is increased relative to a designated control." [OMP:JCH] synonym: "decreased sensitivity to aminoglycoside" RELATED [] is_a: OMP:0006017 ! altered aminoglycoside resistance created_by: jonathanherrera creation_date: 2013-10-22T19:24:20Z [Term] id: OMP:0006059 name: not resistant to aminoglycoside def: "An aminoglycoside resistance phenotype where an organism or cell is sensitive to one or more aminoglycosides." [OMP:JCH] synonym: "aminoglycoside sensitivity" RELATED [] is_a: OMP:0006056 ! aminoglycoside resistance phenotype created_by: jonathanherrera creation_date: 2013-10-22T19:24:20Z [Term] id: OMP:0006060 name: resistant to aminoglycoside def: "An aminoglycoside resistance phenotype where an organism or cell is resistant to one or more aminoglycoside compounds." [OMP:JCH] is_a: OMP:0006056 ! aminoglycoside resistance phenotype created_by: jonathanherrera creation_date: 2013-10-22T19:24:20Z [Term] id: OMP:0006061 name: decreased resistance to tetracycline def: "A tetracycline compound resistance phenotype where resistance to a tetracycline compound is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to tetracycline" RELATED [] is_a: OMP:0005029 ! altered tetracycline resistance created_by: jonathanherrera creation_date: 2013-10-23T19:27:35Z [Term] id: OMP:0006062 name: tetracycline resistance phenotype def: "An antimicrobial compound resistance phenotype related to resistance or sensitivity to tetracyclines: a subclass of polyketides having an octahydrotetracene-2-carboxamide skeleton." [CHEBI:27902, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "bacteriostatic resistance phenotype" BROAD [] synonym: "chlortetracycline resistance phenotype" NARROW [] synonym: "doxycycline resistance phenotype" NARROW [CHEBI:50845] synonym: "minocycline resistance phenotype" NARROW [CHEBI:50694] synonym: "oxytetracycline resistance phenotype" NARROW [CHEBI:27701] synonym: "tetracycline sensitivity phenotype" RELATED [] xref: CHEBI:27902 is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2013-10-23T17:21:25Z [Term] id: OMP:0006063 name: increased resistance to tetracycline def: "A tetracycline compound resistance phenotype where resistance to a tetracycline compound is increased relative to a designated control." [OMP:JCH] synonym: "decreased sensitivity to tetracycline" RELATED [] is_a: OMP:0005029 ! altered tetracycline resistance created_by: jonathanherrera creation_date: 2013-10-23T19:27:35Z [Term] id: OMP:0006064 name: not resistant to tetracycline def: "A tetracycline compound resistance phenotype where an organism or cell is sensitive to one or more tetracyclines." [OMP:JCH] synonym: "sensitivity to tetracycline" RELATED [] is_a: OMP:0006062 ! tetracycline resistance phenotype created_by: jonathanherrera creation_date: 2013-10-23T19:27:35Z [Term] id: OMP:0006065 name: resistant to tetracycline def: "A tetracycline compound resistance phenotype where an organism or cell is resistant to one or more tetracycline compounds." [OMP:JCH] is_a: OMP:0006062 ! tetracycline resistance phenotype created_by: jonathanherrera creation_date: 2013-10-23T19:27:35Z [Term] id: OMP:0006066 name: chloramphenicol resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to an organochlorine compound that is dichloro-substituted acetamide containing a nitrobenzene ring, an amide bond and two alcohol functions." [CHEBI:17698, OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "chloramphenicol sensitivity phenotype" RELATED [] xref: CHEBI:17698 "chloramphenicol" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: jonathanherrera creation_date: 2013-10-24T12:57:25Z [Term] id: OMP:0006067 name: decreased resistance to chloramphenicol def: "A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is decreased relative to a designated control." [OMP:JCH] synonym: "increased sensitivity to chloramphenicol" RELATED [] is_a: OMP:0006025 ! altered chloramphenicol resistance created_by: jonathanherrera creation_date: 2013-10-24T19:41:11Z [Term] id: OMP:0006068 name: increased resistance to chloramphenicol def: "A chloramphenicol compound resistance phenotype where resistance to a chloramphenicol compound is increased relative to a designated control." [OMP:JCH] synonym: "" RELATED [] synonym: "decreased sensitivity to chloramphenicol" RELATED [] is_a: OMP:0006025 ! altered chloramphenicol resistance created_by: jonathanherrera creation_date: 2013-10-24T19:41:11Z [Term] id: OMP:0006069 name: not resistant to chloramphenicol def: "A chloramphenicol compound resistance phenotype where an organism or cell is sensitive to chloramphenicol." [OMP:JCH] synonym: "chloramphenicol sensitivity" RELATED [] is_a: OMP:0006066 ! chloramphenicol resistance phenotype created_by: jonathanherrera creation_date: 2013-10-24T19:41:11Z [Term] id: OMP:0006070 name: resistant to chloramphenicol def: "A chloramphenicol compound resistance phenotype where an organism or cell is resistant to chloramphenicol." [OMP:JCH] is_a: OMP:0006066 ! chloramphenicol resistance phenotype created_by: jonathanherrera creation_date: 2013-10-24T19:41:11Z [Term] id: OMP:0006071 name: altered mutation frequency def: "A mutation frequency phenotype where the frequency, rate, timing, or extent of mutations is altered relative to a designated control." [OMP:JCH] is_a: OMP:0005048 ! mutation frequency phenotype created_by: jonathanherrera creation_date: 2014-07-24T18:18:59Z [Term] id: OMP:0006072 name: not resistant to lantibiotic def: "A lantibiotic resistance phenotype where an organism or cell is sensitive to one or more lantibiotics." [OMP:WAM] synonym: "sensitive to lantibiotic" RELATED [] is_a: OMP:0006011 ! lantibiotic resistance phenotype created_by: jonathanherrera creation_date: 2014-04-30T22:48:59Z [Term] id: OMP:0006073 name: resistant to lantibiotic def: "A lantibiotic resistance phenotype where an organism or cell is resistant to one or more lantibiotic compounds." [OMP:WAM] is_a: OMP:0006011 ! lantibiotic resistance phenotype created_by: jonathanherrera creation_date: 2014-04-30T22:48:59Z [Term] id: OMP:0006074 name: increased resistance to pteridine def: "A pteridine resistance phenotype where resistance to a pteridine compound is increased relative to a designated control." [CHEBI:27601, OMP:DAS] synonym: "decreased sensitivity to pteridine" RELATED [] is_a: OMP:0006032 ! altered pteridine resistance created_by: jonathanherrera creation_date: 2014-05-12T13:04:39Z [Term] id: OMP:0006075 name: not resistant to pteridine def: "A pteridine compound resistance phenotype where an organism or cell is sensitive to one or more pteridine compounds." [CHEBI:27601, OMP:JCH] synonym: "sensitivity to pteridine" RELATED [] is_a: OMP:0007065 ! pteridine resistance phenotype created_by: jonathanherrera creation_date: 2014-05-12T13:04:40Z [Term] id: OMP:0006076 name: resistant to pteridine def: "A pteridine compound resistance phenotype where an organism or cell is resistant to one or more pteridine compounds." [CHEBI:27601, OMP:JCH] is_a: OMP:0007065 ! pteridine resistance phenotype created_by: jonathanherrera creation_date: 2014-05-12T13:04:40Z [Term] id: OMP:0006077 name: altered catalase test result def: "A catalase test phenotype where catalase activity is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000218 ! catalase test is_a: OMP:0007131 ! altered differential test result created_by: jonathanherrera creation_date: 2014-07-15T14:55:03Z [Term] id: OMP:0006078 name: decarboxylase negative def: "A decarboxylase test phenotype where an organism doesn't exhibit decarboxylase activity." [OMP:JCH] is_a: OMP:0000219 ! decarboxylase test created_by: jonathanherrera creation_date: 2014-07-15T19:59:58Z [Term] id: OMP:0006079 name: altered decarboxylase test result def: "A decarboxylase test phenotype where the phenotype of an organism on a decarboxylase test medium is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000219 ! decarboxylase test is_a: OMP:0007131 ! altered differential test result created_by: jonathanherrera creation_date: 2014-07-15T19:59:58Z [Term] id: OMP:0006080 name: decarboxylase positive def: "A decarboxylase test phenotype where an organism exhibits decarboxylase activity." [OMP:JCH] is_a: OMP:0000219 ! decarboxylase test created_by: jonathanherrera creation_date: 2014-07-15T19:59:58Z [Term] id: OMP:0006081 name: increased decarboxylase activity def: "An altered decarboxylase test phenotype where decarboxylase activity is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006079 ! altered decarboxylase test result created_by: jonathanherrera creation_date: 2014-07-15T20:00:41Z [Term] id: OMP:0006082 name: decreased decarboxylase activity def: "An altered decarboxylase test phenotype where decarboxylase activity is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006079 ! altered decarboxylase test result created_by: jonathanherrera creation_date: 2014-07-15T20:00:41Z [Term] id: OMP:0006083 name: altered oxidase test result def: "An oxidase test phenotype where the phenotype of an organism is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000220 ! oxidase test is_a: OMP:0007131 ! altered differential test result created_by: jonathanherrera creation_date: 2014-07-15T20:06:25Z [Term] id: OMP:0006084 name: oxidase negative def: "An oxidase test phenotype where an organism doesn't exhibit oxidase activity." [OMP:JCH] synonym: "oxidase deficient" RELATED [] is_a: OMP:0000220 ! oxidase test created_by: jonathanherrera creation_date: 2014-07-15T20:06:25Z [Term] id: OMP:0006085 name: oxidase positive def: "An oxidase test phenotype where an organism exhibits oxidase activity." [OMP:JCH] is_a: OMP:0000220 ! oxidase test created_by: jonathanherrera creation_date: 2014-07-15T20:06:25Z [Term] id: OMP:0006086 name: increased oxidase activity def: "An altered oxidase test phenotype where oxidase activity is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006083 ! altered oxidase test result created_by: jonathanherrera creation_date: 2014-07-15T20:06:48Z [Term] id: OMP:0006087 name: decreased oxidase activity def: "An altered oxidase test phenotype where oxidase activity is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006083 ! altered oxidase test result created_by: jonathanherrera creation_date: 2014-07-15T20:06:48Z [Term] id: OMP:0006088 name: altered urease test result def: "A urease test phenotype where urease activity is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000222 ! urease test is_a: OMP:0007131 ! altered differential test result created_by: jonathanherrera creation_date: 2014-07-15T20:07:31Z [Term] id: OMP:0006089 name: urease positive def: "A urease test phenotype where an organism exhibits urease activity." [OMP:JCH] is_a: OMP:0000222 ! urease test created_by: jonathanherrera creation_date: 2014-07-15T20:07:31Z [Term] id: OMP:0006090 name: urease negative def: "A urease test phenotype where an organism doesn't exhibit urease activity." [OMP:JCH] synonym: "urease deficient" RELATED [] is_a: OMP:0000222 ! urease test created_by: jonathanherrera creation_date: 2014-07-15T20:07:31Z [Term] id: OMP:0006091 name: increased urease activity def: "An altered urease activity phenotype where urease activity is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006088 ! altered urease test result created_by: jonathanherrera creation_date: 2014-07-15T20:07:54Z [Term] id: OMP:0006092 name: decreased urease activity def: "An altered urease activity phenotype where there urease activity is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006088 ! altered urease test result created_by: jonathanherrera creation_date: 2014-07-15T20:07:54Z [Term] id: OMP:0006093 name: altered quorum sensing phenotype def: "A quorum sensing phenotype where the frequency, rate, timing, or extent of quorum sensing is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000069 ! quorum sensing phenotype created_by: jonathanherrera creation_date: 2014-07-24T18:43:39Z [Term] id: OMP:0006094 name: abolished decarboxylase activity def: "A decreased decarboxylase activity phenotype where decarboxylase activity is abolished." [OMP:JCH] is_a: OMP:0006078 ! decarboxylase negative is_a: OMP:0006082 ! decreased decarboxylase activity created_by: jonathanherrera creation_date: 2014-07-24T20:05:39Z [Term] id: OMP:0006095 name: abolished enzymatic activity def: "A decreased enzymatic activity phenotype where a specified enzymatic activity is abolished." [OMP:JCH] is_a: OMP:0005103 ! decreased catalytic activity is_a: OMP:0007281 ! absence of enzymatic activity created_by: jonathanherrera creation_date: 2014-07-24T20:09:28Z [Term] id: OMP:0006096 name: abolished oxidase activity def: "A decreased oxidase activity phenotype where oxidase activity is abolished." [OMP:JCH] is_a: OMP:0006084 ! oxidase negative is_a: OMP:0006087 ! decreased oxidase activity created_by: jonathanherrera creation_date: 2014-07-24T20:11:44Z [Term] id: OMP:0006097 name: abolished urease activity def: "A decreased urease activity phenotype where urease activity is abolished." [OMP:JCH] is_a: OMP:0006090 ! urease negative is_a: OMP:0006092 ! decreased urease activity created_by: jonathanherrera creation_date: 2014-07-24T20:17:01Z [Term] id: OMP:0006098 name: abolished aerotaxis def: "A decreased aerotaxis phenotype where the ability of a microbe to perform aerotaxis is abolished." [OMP:JCH] is_a: OMP:0000159 ! absence of aerotaxis is_a: OMP:0000500 ! decreased aerotaxis created_by: jonathanherrera creation_date: 2014-07-24T20:18:01Z [Term] id: OMP:0006099 name: abolished budding def: "A decreased budding phenotype where the fraction of budding cells is decreased to zero." [OMP:JCH] is_a: OMP:0006006 ! decreased budding is_a: OMP:0007234 ! absence of budding created_by: jonathanherrera creation_date: 2014-07-25T11:08:59Z [Term] id: OMP:0006100 name: abolished motility by swimming def: "A decreased motility by swimming phenotype where the ability of a microbe to move by swimming motility is abolished." [OMP:JCH] is_a: OMP:0007000 ! abolished motility is_a: OMP:0007093 ! decreased cell motility by swimming is_a: OMP:0007490 ! absence of motility by swimming created_by: jonathanherrera creation_date: 2014-08-15T19:12:43Z [Term] id: OMP:0006101 name: abolished caffeine resistance def: "A caffeine resistance phenotype where resistance to caffeine is abolished." [OMP:JCH] is_a: OMP:0000458 ! not resistant to caffeine is_a: OMP:0000460 ! decreased caffeine resistance created_by: jonathanherrera creation_date: 2014-07-25T11:40:57Z [Term] id: OMP:0006102 name: abolished capsule formation def: "A decreased amount of capsule phenotype where capsule is abolished." [OMP:JCH] is_a: OMP:0000050 ! decreased amount of capsule is_a: OMP:0000211 ! absence of capsule created_by: jonathanherrera creation_date: 2014-07-25T11:52:24Z [Term] id: OMP:0006103 name: abolished carbon source utilization def: "A decreased carbon source utilization phenotype where the ability to utilize a carbon source is abolished." [OMP:JCH] is_a: OMP:0007070 ! decreased carbon source utilization created_by: jonathanherrera creation_date: 2014-07-25T11:54:11Z [Term] id: OMP:0006104 name: abolished catalase activity def: "A decreased catalase activity phenotype where catalase activity is abolished." [OMP:JCH] is_a: OMP:0000195 ! decreased catalase activity is_a: OMP:0000198 ! catalase negative created_by: jonathanherrera creation_date: 2014-07-25T11:59:12Z [Term] id: OMP:0006105 name: antimicrobial peptide production phenotype def: "A secondary metabolite production phenotype where the metabolite produced is an antimicrobial peptide, which can have protective properties against bacteria, fungi, viruses, or protozoa." [GO:0000276, OMP:TCK] is_a: OMP:0006000 ! secondary metabolite production phenotype created_by: tkveton creation_date: 2015-06-09T15:14:37Z [Term] id: OMP:0006106 name: altered antimicrobial peptide production def: "An antimicrobial peptide production phenotype where the production of an antimicrobial peptide is altered relative to a designated control." [OMP:TCK] is_a: OMP:0006105 ! antimicrobial peptide production phenotype created_by: tkveton creation_date: 2015-06-09T15:16:13Z [Term] id: OMP:0006107 name: presence of outer membrane vesicles def: "A outer membrane vesicles phenotype where a cell or cells produce outer membrane vesicles." [OMP:JCH] synonym: "vesiculation " EXACT [] is_a: OMP:0000202 ! outer membrane vesicles phenotype created_by: jonathanherrera creation_date: 2014-07-28T18:19:45Z [Term] id: OMP:0006108 name: abolished chemotaxis def: "A decreased chemotaxis phenotype where chemotaxis by a motile microbe is abolished." [OMP:JCH] is_a: OMP:0000097 ! absence of chemotaxis is_a: OMP:0000503 ! decreased chemotaxis created_by: jonathanherrera creation_date: 2014-07-25T12:11:10Z [Term] id: OMP:0006109 name: absence of outer membrane vesicles def: "A outer membrane vesicles phenotype where a cell or cells don't produce outer membrane vesicles." [OMP:JCH] is_a: OMP:0000202 ! outer membrane vesicles phenotype created_by: jonathanherrera creation_date: 2014-07-28T18:19:45Z [Term] id: OMP:0006110 name: abolished endospore formation def: "A decreased endospore formation phenotype where the rate, frequency, timing, or extent of endospore formation is abolished." [OMP:JCH] is_a: OMP:0000013 ! decreased endospore formation is_a: OMP:0000018 ! absence of endospore formation intersection_of: OMP:0000013 ! decreased endospore formation intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: jonathanherrera creation_date: 2014-07-25T12:21:50Z [Term] id: OMP:0006111 name: abolished chromosome segregation def: "A altered chromosome segregation phenotype where the ability to partition a set of chromosomes to daughter cells is abolished." [OMP:JCH] is_a: OMP:0006001 ! altered chromosome segregation is_a: OMP:0007601 ! absence of chromosome segregation created_by: jonathanherrera creation_date: 2014-07-25T12:24:27Z [Term] id: OMP:0006112 name: abolished gene silencing def: "A decreased frequency of gene silencing phenotype where the ability to silence genes is abolished." [OMP:JCH] is_a: OMP:0005065 ! decreased frequency of gene silencing created_by: jonathanherrera creation_date: 2014-07-25T12:40:10Z [Term] id: OMP:0006113 name: abolished homologous recombination def: "A decreased frequency of homologous recombination phenotype where the ability to perform homologous recombination is abolished." [OMP:JCH] is_a: OMP:0005050 ! decreased frequency of homologous recombination is_a: OMP:0005052 ! absence of homologous recombination created_by: jonathanherrera creation_date: 2014-07-25T12:45:20Z [Term] id: OMP:0006114 name: abolished site-specific recombination def: "A decreased frequency of site-specific recombination phenotype where the ability to perform site-specific recombination is abolished." [OMP:JCH] is_a: OMP:0005056 ! decreased frequency of site-specific recombination is_a: OMP:0005057 ! absence of site-specific recombination created_by: jonathanherrera creation_date: 2014-07-25T12:47:43Z [Term] id: OMP:0006115 name: abolished gene expression def: "A decreased gene expression phenotype where expression of a gene or genes is abolished relative to a designated control." [OMP:JCH] is_a: OMP:0000268 ! decreased gene expression created_by: jonathanherrera creation_date: 2014-07-25T12:50:04Z [Term] id: OMP:0006116 name: abolished growth at acidic pH def: "A decreased growth at acidic pH phenotype where the ability to grow at an acidic pH is abolished." [OMP:DAS] is_a: OMP:0007008 ! decreased growth at acidic pH created_by: jonathanherrera creation_date: 2014-07-25T12:58:01Z [Term] id: OMP:0006117 name: abolished growth at alkaline pH def: "A decreased growth at alkaline pH phenotype where the ability to grow at alkaline pH is abolished." [OMP:JCH] is_a: OMP:0007010 ! decreased growth at alkaline pH created_by: jonathanherrera creation_date: 2014-07-25T13:02:17Z [Term] id: OMP:0006118 name: decreased antimicrobial peptide production def: "An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is decreased relative to a designated control." [OMP:TCK] is_a: OMP:0006106 ! altered antimicrobial peptide production created_by: tkveton creation_date: 2015-06-09T15:17:23Z [Term] id: OMP:0006119 name: abolished hemolysis def: "A decreased hemolysis phenotype where hemolysis is abolished." [OMP:JCH] is_a: OMP:0000208 ! absence of hemolysis is_a: OMP:0000249 ! decreased hemolysis created_by: jonathanherrera creation_date: 2014-07-25T13:17:12Z [Term] id: OMP:0006120 name: abolished heterocyst formation def: "A decreased heterocyst formation phenotype where the ability to form heterocysts is abolished." [OMP:JCH] is_a: OMP:0000011 ! absence of heterocysts is_a: OMP:0000015 ! decreased heterocyst formation created_by: jonathanherrera creation_date: 2014-07-25T13:19:17Z [Term] id: OMP:0006121 name: abolished induced expression of the SOS response def: "A decreased induced expression of the SOS response phenotype where induced expression of one or more genes in the SOS response is abolished." [OMP:JCH] is_a: OMP:0005022 ! absence of an SOS response is_a: OMP:0005025 ! decreased induced expression of the SOS response created_by: jonathanherrera creation_date: 2014-07-25T13:22:37Z [Term] id: OMP:0006122 name: abolished uninduced expression of the SOS response def: "A decreased basal expression of the SOS response phenotype where basal expression of one or more genes in the SOS response is abolished." [OMP:JCH] is_a: OMP:0005021 ! decreased basal expression of the SOS response created_by: jonathanherrera creation_date: 2014-07-25T13:24:16Z [Term] id: OMP:0006123 name: abolished mitotic recombination def: "A decreased mitotic recombination phenotype where the ability to perform mitotic recombination is abolished." [OMP:JCH] is_a: OMP:0005071 ! decreased mitotic recombination created_by: jonathanherrera creation_date: 2014-07-25T13:27:32Z [Term] id: OMP:0006124 name: abolished mutation frequency def: "A decreased mutation frequency phenotype where mutations no longer occur." [OMP:JCH] comment: This term was made obsolete because it describes a phenotype that is unlikely to occur in nature. is_obsolete: true created_by: jonathanherrera creation_date: 2014-07-25T14:05:31Z [Term] id: OMP:0006125 name: abolished myxospore formation def: "A decreased myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is abolished." [OMP:JCH] is_a: OMP:0000021 ! absence of myxospore formation is_a: OMP:0000022 ! decreased myxospore formation intersection_of: OMP:0000022 ! decreased myxospore formation intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: jonathanherrera creation_date: 2014-07-25T14:07:02Z [Term] id: OMP:0006126 name: altered DNA supercoiling def: "A DNA supercoiling phenotype where supercoiling is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000294 ! DNA supercoiling phenotype created_by: jonathanherrera creation_date: 2014-07-25T14:11:37Z [Term] id: OMP:0006127 name: abolished negative DNA supercoiling def: "A decrease negative DNA supercoiling phenotype where the ability to form negative supercoils in DNA is abolished." [OMP:JCH] is_a: OMP:0001002 ! decreased negative supercoiling is_a: OMP:0006129 ! absence of negative supercoiling created_by: jonathanherrera creation_date: 2014-07-25T14:16:09Z [Term] id: OMP:0006128 name: abolished positive DNA supercoiling def: "A decreased positive DNA supercoiling phenotype where the ability to form positive supercoils in DNA is abolished." [OMP:JCH] is_a: OMP:0006130 ! absence of positive supercoiling is_a: OMP:0007002 ! decreased positive supercoiling created_by: jonathanherrera creation_date: 2014-07-25T14:16:27Z [Term] id: OMP:0006129 name: absence of negative supercoiling def: "A DNA supercoiling phenotype where negative supercoiling is absent." [OMP:JCH] is_a: OMP:0000294 ! DNA supercoiling phenotype created_by: jonathanherrera creation_date: 2014-07-25T14:32:08Z [Term] id: OMP:0006130 name: absence of positive supercoiling def: "A DNA supercoiling phenotype where positive supercoiling is absent." [OMP:JCH] is_a: OMP:0000294 ! DNA supercoiling phenotype created_by: jonathanherrera creation_date: 2014-07-25T14:32:42Z [Term] id: OMP:0006131 name: abolished flagella def: "A decreased number of flagella phenotype where the number of flagella per cell is decreased to zero." [OMP:JCH] is_a: OMP:0000030 ! absence of flagellum is_a: OMP:0000215 ! decreased number of flagella created_by: jonathanherrera creation_date: 2014-07-25T14:43:31Z [Term] id: OMP:0006132 name: abolished number of pili def: "A decreased number of pili phenotype where the number of pili is decreased to zero." [OMP:JCH] is_a: OMP:0000028 ! decreased number of pili is_a: OMP:0000033 ! absence of pilus created_by: jonathanherrera creation_date: 2014-07-25T14:46:12Z [Term] id: OMP:0006133 name: abolished purine requirement def: "A decreased purine requirement phenotype where the requirement for a purine base as a growth factor is abolished." [OMP:JCH] is_a: OMP:0007022 ! decreased purine requirement created_by: jonathanherrera creation_date: 2014-07-25T14:47:24Z [Term] id: OMP:0006134 name: abolished quorum sensing def: "A decreased quorum sensing phenotype where the ability to perform quorum sensing is abolished." [OMP:JCH] is_a: OMP:0000063 ! absence of quorum sensing is_a: OMP:0007028 ! decreased quorum sensing created_by: jonathanherrera creation_date: 2014-07-25T14:49:11Z [Term] id: OMP:0006135 name: abolished biofilm formation def: "A decreased biofilm formation phenotype where the ability to form a biofilm is abolished." [OMP:JCH] is_a: OMP:0007026 ! decreased biofilm formation created_by: jonathanherrera creation_date: 2014-07-25T14:50:55Z [Term] id: OMP:0006136 name: abolished transposition def: "A decreased rate of transposition phenotype where the ability to perform transposition is abolished." [OMP:JCH] is_a: OMP:0005075 ! decreased rate of transposable element transposition created_by: jonathanherrera creation_date: 2014-07-25T14:52:06Z [Term] id: OMP:0006137 name: abolished resistance to aminoglycoside def: "A decreased resistance to aminoglycoside phenotype where resistance to an aminoglycoside is abolished." [OMP:JCH] is_a: OMP:0006057 ! decreased resistance to aminoglycoside is_a: OMP:0006059 ! not resistant to aminoglycoside created_by: jonathanherrera creation_date: 2014-07-25T14:54:43Z [Term] id: OMP:0006138 name: abolished resistance to aminopyrimidine def: "A decreased resistance to aminopyrimidines phenotype where resistance to aminopyrimidine compounds is abolished." [OMP:JCH] is_a: OMP:0000335 ! decreased resistance to aminopyrimidine is_a: OMP:0000436 ! not resistant to aminopyrimidine created_by: jonathanherrera creation_date: 2014-07-25T14:59:06Z [Term] id: OMP:0006139 name: abolished resistance to azole def: "A decreased resistance to azole phenotype where resistance to azole is abolished." [OMP:JCH] is_a: OMP:0006052 ! decreased resistance to azole is_a: OMP:0006054 ! not resistant to azole created_by: jonathanherrera creation_date: 2014-07-25T15:00:48Z [Term] id: OMP:0006140 name: abolished resistance to bacteriocin def: "A decreased resistance to bacteriocin phenotype where resistance to one or more bacteriocins is abolished." [OMP:JCH] is_a: OMP:0006048 ! decreased resistance to bacteriocin is_a: OMP:0006050 ! not resistant to bacteriocin created_by: jonathanherrera creation_date: 2014-07-25T15:02:13Z [Term] id: OMP:0006141 name: abolished resistance to beta-lactam def: "A decreased resistance to beta-lactam phenotype where resistance to beta-lactam is abolished." [OMP:JCh] is_a: OMP:0006044 ! decreased resistance to beta-lactam is_a: OMP:0006046 ! not resistant to beta-lactam created_by: jonathanherrera creation_date: 2014-07-25T15:04:08Z [Term] id: OMP:0006142 name: abolished resistance to chloramphenicol def: "A decreased resistance to chloramphenicol phenotype where resistance to chloramphenicol is abolished." [OMP:JCH] is_a: OMP:0006067 ! decreased resistance to chloramphenicol is_a: OMP:0006069 ! not resistant to chloramphenicol created_by: jonathanherrera creation_date: 2014-07-25T15:05:24Z [Term] id: OMP:0006143 name: abolished resistance to lantibiotic def: "A decreased resistance to lantibiotics phenotype where resistance to lantibiotics is abolished." [OMP:JCh] is_a: OMP:0006012 ! decreased resistance to lantibiotic is_a: OMP:0006072 ! not resistant to lantibiotic created_by: jonathanherrera creation_date: 2014-07-25T15:07:57Z [Term] id: OMP:0006144 name: abolished resistance to macrolide def: "A decreased resistance to macrolide phenotype where resistance to macrolides is abolished." [OMP:JCH] is_a: OMP:0006036 ! decreased resistance to macrolide is_a: OMP:0006038 ! not resistant to macrolide created_by: jonathanherrera creation_date: 2014-07-25T15:09:24Z [Term] id: OMP:0006145 name: abolished resistance to pteridine def: "A decreased resistance to pteridine phenotype where resistance to pteridine is abolished." [OMP:JCH] is_a: OMP:0006075 ! not resistant to pteridine is_a: OMP:0007004 ! decreased resistance to pteridine created_by: jonathanherrera creation_date: 2014-07-25T15:11:04Z [Term] id: OMP:0006146 name: abolished resistance to quinolone def: "A decreased resistance to quinolone phenotype where resistance to a quinolone is abolished." [OMP:JCH] is_a: OMP:0006040 ! decreased resistance to quinolone is_a: OMP:0006042 ! not resistant to quinolone created_by: jonathanherrera creation_date: 2014-07-25T15:12:28Z [Term] id: OMP:0006147 name: abolished resistance to tetracycline def: "A decreased resistance to tetracycline phenotype where resistance to tetracycline is abolished." [OMP:JCH] is_a: OMP:0006061 ! decreased resistance to tetracycline is_a: OMP:0006064 ! not resistant to tetracycline created_by: jonathanherrera creation_date: 2014-07-25T15:18:09Z [Term] id: OMP:0006148 name: abolished stress-induced mutagenesis def: "A decreased stress-induced mutagenesis phenotype where stress-induced mutagenesis is abolished." [OMP:JCH] is_a: OMP:0005031 ! decreased stress-induced mutagenesis is_a: OMP:0005033 ! absence of stress-induced mutagenesis created_by: jonathanherrera creation_date: 2014-07-25T15:19:48Z [Term] id: OMP:0006149 name: abolished utilization of dinitrogen def: "A decreased dinitrogen utilization phenotype where the ability to fix dinitrogen is abolished." [OMP:JCH] is_a: OMP:0007029 ! decreased utilization of dinitrogen is_a: OMP:0007191 ! absence of dinitrogen utilization created_by: jonathanherrera creation_date: 2014-07-25T15:22:06Z [Term] id: OMP:0006150 name: abolished utilization of inorganic nitrogen def: "A decreased utilization of inorganic nitrogen phenotype where an organism loses the ability to utilize inorganic nitrogen." [OMP:JCH] is_a: OMP:0007032 ! decreased utilization of inorganic nitrogen source is_a: OMP:0007307 ! absence of inorganic nitrogen utilization created_by: jonathanherrera creation_date: 2014-07-25T15:23:03Z [Term] id: OMP:0006151 name: abolished utilization of inorganic phosphorus def: "A decreased utilization of inorganic phosphorus phenotype where the ability to utilize inorganic phosphorus is abolished." [OMP:JCH] is_a: OMP:0007047 ! decreased utilization of inorganic phosphorus source created_by: jonathanherrera creation_date: 2014-07-25T15:31:15Z [Term] id: OMP:0006152 name: abolished utilization of inorganic sulfur def: "A decreased utilization of inorganic sulfur phenotype where the ability to utilize an inorganic sulfur source is abolished." [OMP:JCH] is_a: OMP:0007055 ! decreased utilization of inorganic sulfur is_a: OMP:0007325 ! absence of inorganic sulfur utilization created_by: jonathanherrera creation_date: 2014-07-25T15:33:11Z [Term] id: OMP:0006153 name: abolished utilization of organic nitrogen def: "A decreased utilization of organic nitrogen phenotype where the ability to utilize organic nitrogen is abolished." [OMP:JCH] is_a: OMP:0007035 ! decreased utilization of organic nitrogen source created_by: jonathanherrera creation_date: 2014-07-25T15:36:09Z [Term] id: OMP:0006154 name: abolished utilization of organic phosphorus def: "A decreased utilization of organic phosphorus phenotype where the ability to utilize organic phosphorus is abolished." [OMP:JCH] is_a: OMP:0007050 ! decreased utilization of organic phosphorus source created_by: jonathanherrera creation_date: 2014-07-25T15:37:42Z [Term] id: OMP:0006155 name: abolished utilization of organic sulfur def: "A decreased utilization of organic sulfur phenotype where the ability to utilize an organic sulfur source is abolished." [OMP:JCH] is_a: OMP:0007058 ! decreased utilization of organic sulfur source is_a: OMP:0007326 ! absence of organic sulfur utilization created_by: jonathanherrera creation_date: 2014-07-25T15:40:13Z [Term] id: OMP:0006156 name: altered outer membrane vesicles def: "An outer membrane vesicle phenotype where the frequency, rate, timing, or extent of production of outer membrane vesicles is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000202 ! outer membrane vesicles phenotype created_by: jonathanherrera creation_date: 2014-07-28T18:44:09Z [Term] id: OMP:0006157 name: abolished vitamin/enzyme cofactor requirement def: "A decreased vitamin/enzyme cofactor requirement phenotype where the requirement for a vitamin/enzyme cofactor is abolished." [OMP:JCH] is_a: OMP:0007025 ! decreased vitamin/enzyme cofactor requirement created_by: jonathanherrera creation_date: 2014-07-25T15:43:18Z [Term] id: OMP:0006158 name: increased outer membrane vesicle production def: "An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is increased relative to a designated control." [OMP:JCH] synonym: "hyper-vesiculating" EXACT [] is_a: OMP:0007129 ! altered outer membrane vesicle production created_by: jonathanherrera creation_date: 2014-07-28T18:45:05Z [Term] id: OMP:0006159 name: decreased outer membrane vesicle production def: "An altered outer membrane vesicle production phenotype where production of outer membrane vesicles is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0007129 ! altered outer membrane vesicle production created_by: jonathanherrera creation_date: 2014-07-28T18:45:05Z [Term] id: OMP:0006160 name: abolished outer membrane vesicle def: "A decreased outer membrane vesicle phenotype where the ability to produce outer membrane vesicles is abolished." [OMP:JCH] is_a: OMP:0006109 ! absence of outer membrane vesicles is_a: OMP:0006159 ! decreased outer membrane vesicle production created_by: jonathanherrera creation_date: 2014-07-28T20:49:39Z [Term] id: OMP:0006161 name: altered endospore formation def: "A endospore formation phenotype where the frequency, rate, timing, or extent of endospore formation is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000094 ! endospore formation phenotype is_a: OMP:0007145 ! altered asexual sporulation intersection_of: OMP:0000094 ! endospore formation phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: jonathanherrera creation_date: 2014-07-29T15:37:45Z [Term] id: OMP:0006162 name: altered nanotube phenotype def: "A nanotube phenotype where the frequency, rate, timing, or extent of formation of the tube structure is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000175 ! nanotube phenotype created_by: jonathanherrera creation_date: 2014-07-29T18:03:06Z [Term] id: OMP:0006163 name: presence of heme utilization def: "A heme utilization phenotype where a cell or cells exhibit the ability to utilize heme as a source of iron." [OMP:JCH] is_a: OMP:0000451 ! heme utilization phenotype created_by: jonathanherrera creation_date: 2014-08-05T13:35:01Z [Term] id: OMP:0006164 name: altered colony size phenotype def: "An colony size phenotype where size is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000179 ! colony size phenotype is_a: OMP:0007160 ! altered colony morphology created_by: jonathanherrera creation_date: 2014-08-05T13:44:09Z [Term] id: OMP:0006165 name: cylindrical akinete def: "An akinete morphology phenotype where the organism forms a cylindrical akinete." [OMP:JCH] is_a: OMP:0007409 ! akinete morphology phenotype created_by: jonathanherrera creation_date: 2014-08-06T17:30:58Z [Term] id: OMP:0006166 name: presence of binary fission def: "A binary fission phenotype where an organism multiplies by the process of binary fission." [OMP:JCH] is_a: OMP:0007067 ! binary fission phenotype created_by: jonathanherrera creation_date: 2014-08-08T15:51:18Z [Term] id: OMP:0006167 name: abolished motility by swarming def: "A decreased motility by swarming phenotype where the ability of a microbe to move by swarming motility is abolished." [OMP:JCH] is_a: OMP:0007000 ! abolished motility is_a: OMP:0007092 ! decreased motility by swarming is_a: OMP:0007489 ! absence of motility by swarming created_by: jonathanherrera creation_date: 2014-08-13T17:25:47Z [Term] id: OMP:0006168 name: altered binary fission def: "A binary fission phenotype where the rate, frequency, timing, or extent of binary fission is altered relative to a designated control." [OMP:JCH] is_a: OMP:0007067 ! binary fission phenotype is_a: OMP:0007144 ! altered asexual reproduction created_by: jonathanherrera creation_date: 2014-08-08T15:59:42Z [Term] id: OMP:0006169 name: increased binary fission def: "An altered binary fission phenotype where the frequency, rate, timing, or extent of binary fission is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006168 ! altered binary fission created_by: jonathanherrera creation_date: 2014-08-08T16:01:46Z [Term] id: OMP:0006170 name: decreased binary fission def: "An altered binary fission phenotype where the rate, frequency, timing, or extent of binary fission is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006168 ! altered binary fission created_by: jonathanherrera creation_date: 2014-08-08T16:01:46Z [Term] id: OMP:0006171 name: abolished binary fission def: "A decreased binary fission phenotype where the rate, frequency, timing, or extent of binary fission is abolished." [OMP:JCH] is_a: OMP:0006170 ! decreased binary fission is_a: OMP:0007233 ! absence of binary fission created_by: jonathanherrera creation_date: 2014-08-08T16:01:54Z [Term] id: OMP:0006172 name: increased antimicrobial peptide production def: "An antimicrobial peptide production phenotype where the amount of antimicrobial peptide produced is increased relative to a designated control." [OMP:TCK] is_a: OMP:0006106 ! altered antimicrobial peptide production created_by: tkveton creation_date: 2015-06-09T15:17:53Z [Term] id: OMP:0006173 name: presence of multiple fission def: "A multiple fission phenotype where an organism reproduces by the process of multiple fission." [OMP:JCH] is_a: OMP:0007068 ! multiple fission phenotype created_by: jonathanherrera creation_date: 2014-08-08T16:42:12Z [Term] id: OMP:0006174 name: altered multiple fission def: "A multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is altered relative to a designated control." [OMP:JCH] is_a: OMP:0007068 ! multiple fission phenotype is_a: OMP:0007144 ! altered asexual reproduction created_by: jonathanherrera creation_date: 2014-08-08T16:42:12Z [Term] id: OMP:0006175 name: decreased multiple fission def: "An altered multiple fission phenotype where the rate, frequency, timing, or extent of multiple fission is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0006174 ! altered multiple fission created_by: jonathanherrera creation_date: 2014-08-08T16:46:45Z [Term] id: OMP:0006176 name: increased multiple fission def: "An altered multiple fission phenotype where the frequency, rate, timing, or extent of multiple fission is increased relative to a designated control." [OMP:JCH] is_a: OMP:0006174 ! altered multiple fission created_by: jonathanherrera creation_date: 2014-08-08T16:46:45Z [Term] id: OMP:0006177 name: abolished multiple fission def: "A decreased multiple fission phenotype where the rate, frequency, timing, or extent of the process of multiple fission is abolished." [OMP:JCH] is_a: OMP:0006175 ! decreased multiple fission is_a: OMP:0007235 ! absence of multiple fission created_by: jonathanherrera creation_date: 2014-08-08T16:49:27Z [Term] id: OMP:0006178 name: abolished antimicrobial peptide production def: "An antimicrobial peptide production phenotype where the organism's ability to produce an antimicrobial peptide is abolished." [OMP:TCK] is_a: OMP:0006118 ! decreased antimicrobial peptide production is_a: OMP:0006180 ! absence of antimicrobial peptide production created_by: tkveton creation_date: 2015-06-09T15:18:24Z [Term] id: OMP:0006179 name: presence of antimicrobial peptide production def: "An antimicrobial peptide production phenotype where an organism has the ability to produce an antimicrobial peptide." [OMP:TCK] is_a: OMP:0006105 ! antimicrobial peptide production phenotype created_by: tkveton creation_date: 2015-06-09T15:19:02Z [Term] id: OMP:0006180 name: absence of antimicrobial peptide production def: "An antimicrobial peptide production phenotype where an organism does not have the ability to produce an antimicrobial peptide." [OMP:TCK] is_a: OMP:0006105 ! antimicrobial peptide production phenotype created_by: tkveton creation_date: 2015-06-09T15:19:38Z [Term] id: OMP:0007000 name: abolished motility def: "A decreased motility phenotype where the ability of a microbe to be motile is abolished." [OMP:JCH] is_a: OMP:0000002 ! decreased motility is_a: OMP:0000133 ! absence of motility intersection_of: OMP:0000002 ! decreased motility intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: siegele creation_date: 2014-06-29T14:10:40Z [Term] id: OMP:0007001 name: altered motility def: "A motility phenotype where the frequency, rate, timing, or extent of a microbe's motility is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000001 ! motility phenotype is_a: OMP:0007085 ! altered microbial phenotype intersection_of: OMP:0000001 ! motility phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-04-24T17:38:06Z [Term] id: OMP:0007002 name: decreased positive supercoiling def: "An altered DNA supercoiling phenotype where positive supercoiling is decreased relative to a designated control." [OMP:WAM] is_a: OMP:0006126 ! altered DNA supercoiling created_by: siegele creation_date: 2013-09-05T16:08:29Z [Term] id: OMP:0007003 name: increased positive supercoiling def: "An altered DNA supercoiling phenotype where positive supercoiling is increased relative to a designated control." [OMP:WAM] is_a: OMP:0006126 ! altered DNA supercoiling created_by: siegele creation_date: 2013-09-05T16:09:28Z [Term] id: OMP:0007004 name: decreased resistance to pteridine def: "A pteridine resistance phenotype where resistance to a pteridine compound is decreased relative to a designated control." [CHEBI:27601, OMP:DAS] synonym: "increased sensitivity to pteridine" RELATED [] is_a: OMP:0006032 ! altered pteridine resistance created_by: DeborahSiegele creation_date: 2014-01-31T18:03:55Z [Term] id: OMP:0007005 name: decreased negative chemotaxis def: "A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0000503 ! decreased chemotaxis created_by: dsiegele creation_date: 2014-08-07T18:35:51Z [Term] id: OMP:0007006 name: population phenotype def: "A microbial phenotype where the phenotype is observed at the level of a microbial population." [OMP:DAS] comment: This high-level term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. Please consider using a more specific term to annotate each phenotype. subset: gocheck_do_not_annotate subset: gocheck_do_not_manually_annotate xref: OBI:0000181 "population" is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2014-07-21T10:25:43Z [Term] id: OMP:0007007 name: nutrient import phenotype def: "A nutrient utilization phenotype concerning the uptake of one or more nutrients from the environment." [OMP:DAS] xref: GO:0098657 "import into cell" is_a: OMP:0006022 ! nutrient utilization phenotype created_by: siegele creation_date: 2014-07-31T16:11:22Z [Term] id: OMP:0007008 name: decreased growth at acidic pH def: "An altered pH growth range phenotype where the ability to grow at some pH that is lower than pH 7 is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007138 ! altered pH growth range created_by: siegele creation_date: 2013-09-11T17:11:01Z [Term] id: OMP:0007009 name: increased growth at acidic pH def: "An altered growth range phenotype where the ability to grow at some pH that is lower than pH 7 is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007138 ! altered pH growth range created_by: siegele creation_date: 2013-09-11T17:11:44Z [Term] id: OMP:0007010 name: decreased growth at alkaline pH def: "An altered pH growth range phenotype where the ability to grow at some pH that is higher than pH 7 is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007138 ! altered pH growth range created_by: siegele creation_date: 2013-09-11T17:14:28Z [Term] id: OMP:0007011 name: increased growth at alkaline pH def: "An altered pH growth range phenotype where the ability to grow at some pH that is higher than pH 7 is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007138 ! altered pH growth range created_by: siegele creation_date: 2013-09-11T17:14:56Z [Term] id: OMP:0007012 name: autotrophic def: "A carbon source utilization phenotype where a microbe can use carbon dioxide (CO2) as the sole or primary carbon source." [ISBN:9780073402406, OMP:DAS] is_a: OMP:0006023 ! carbon source utilization phenotype created_by: siegele creation_date: 2013-09-13T15:10:16Z [Term] id: OMP:0007013 name: inorganic nitrogen source utilization phenotype def: "A nitrogen source utilization phenotype where an inorganic nitrogen-containing compound is the source of nitrogen." [OMP:DAS] synonym: "nitrate utilization, phenotype " NARROW [] is_a: OMP:0006026 ! nitrogen source utilization phenotype created_by: siegele creation_date: 2013-09-13T15:19:33Z [Term] id: OMP:0007014 name: organic nitrogen source utilization phenotype def: "A nitrogen source utilization phenotype where an organic nitrogen-containing compound is the source of nitrogen." [OMP:DAS] is_a: OMP:0006026 ! nitrogen source utilization phenotype created_by: siegele creation_date: 2013-09-13T15:20:24Z [Term] id: OMP:0007015 name: altered nutrient import phenotype def: "A nutrient uptake phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007007 ! nutrient import phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2014-07-31T16:16:15Z [Term] id: OMP:0007016 name: decreased nutrient import def: "An altered nutrient import phenotype where import is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007015 ! altered nutrient import phenotype created_by: siegele creation_date: 2014-07-31T16:16:52Z [Term] id: OMP:0007017 name: abolished nutrient import def: "A decreased nutrient import phenotype where the ability to import a nutrient into a cell or organism is abolished." [OMP:DAS] is_a: OMP:0007016 ! decreased nutrient import created_by: siegele creation_date: 2014-07-31T16:18:02Z [Term] id: OMP:0007018 name: does not require growth factor(s) def: "A growth factor requirement phenotype where an organism can synthesize all organic compounds essential for its growth from a single carbon substrate and inorganic chemicals." [OMP:DAS] synonym: "prototroph" EXACT [] synonym: "prototrophic" EXACT [] is_a: OMP:0007044 ! growth factor requirement phenotype created_by: siegele creation_date: 2013-09-16T17:29:19Z [Term] id: OMP:0007019 name: increased amino acid requirement def: "An amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007074 ! increased growth factor requirement is_a: OMP:0007354 ! altered amino acid requirement created_by: siegele creation_date: 2013-09-16T17:30:07Z [Term] id: OMP:0007020 name: increased biofilm formation def: "An altered biofilm phenotype where the amount of biofilm is increased relative to a designated control." [OMP:DAS] is_a: OMP:0005129 ! altered biofilm created_by: siegele creation_date: 2014-08-01T00:12:56Z [Term] id: OMP:0007021 name: decreased amino acid requirement def: "An altered amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007075 ! decreased growth factor requirement is_a: OMP:0007354 ! altered amino acid requirement created_by: siegele creation_date: 2013-09-17T16:13:20Z [Term] id: OMP:0007022 name: decreased purine requirement def: "An altered purine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007075 ! decreased growth factor requirement is_a: OMP:0007081 ! altered purine requirement created_by: siegele creation_date: 2013-09-17T16:30:10Z [Term] id: OMP:0007023 name: increased purine requirement def: "An altered purine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007074 ! increased growth factor requirement is_a: OMP:0007081 ! altered purine requirement created_by: siegele creation_date: 2013-09-17T16:30:36Z [Term] id: OMP:0007024 name: increased vitamin/enzyme cofactor requirement def: "A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007074 ! increased growth factor requirement is_a: OMP:0007082 ! altered vitamin/enzyme cofactor requirement created_by: siegele creation_date: 2013-09-17T16:31:05Z [Term] id: OMP:0007025 name: decreased vitamin/enzyme cofactor requirement def: "A vitamin/enzyme cofactor requirement phenotype the requirement for a vitamin/enzyme cofactor in the growth medium is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007075 ! decreased growth factor requirement is_a: OMP:0007082 ! altered vitamin/enzyme cofactor requirement created_by: siegele creation_date: 2013-09-17T16:33:34Z [Term] id: OMP:0007026 name: decreased biofilm formation def: "An altered biofilm phenotype where the amount of biofilm is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0005129 ! altered biofilm created_by: siegele creation_date: 2014-08-01T00:12:56Z [Term] id: OMP:0007027 name: increased quorum sensing def: "A quorum sensing phenotype where organisms ability to monitor their population density is increased relative to a designated control." [OMP:DAS] is_a: OMP:0006093 ! altered quorum sensing phenotype created_by: siegele creation_date: 2013-09-17T16:45:02Z [Term] id: OMP:0007028 name: decreased quorum sensing def: "An altered quorum sensing phenotype where the ability of organisms to monitor their population density is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0006093 ! altered quorum sensing phenotype created_by: siegele creation_date: 2013-09-17T16:45:18Z [Term] id: OMP:0007029 name: decreased utilization of dinitrogen def: "A dinitrogen (N2) utilization phenotype where the ability to use N2 as a nitrogen source is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007190 ! altered dinitrogen utilization created_by: DeborahSiegele creation_date: 2013-09-28T20:59:52Z [Term] id: OMP:0007030 name: increased utilization of dinitrogen def: "A dinitrogen (N2) utilization phenotype where the nitrogen source is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007190 ! altered dinitrogen utilization created_by: DeborahSiegele creation_date: 2013-09-28T21:02:26Z [Term] id: OMP:0007031 name: presence of dinitrogen utilization def: "A dinitrogen utilization phenotype where an organism can use N2 as the source of nitrogen." [OMP:DAS] is_a: OMP:0006030 ! dinitrogen utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-28T21:02:26Z [Term] id: OMP:0007032 name: decreased utilization of inorganic nitrogen source def: "An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007305 ! altered utilization of inorganic nitrogen source created_by: DeborahSiegele creation_date: 2013-09-28T21:03:56Z [Term] id: OMP:0007033 name: increased utilization of inorganic nitrogen source def: "An inorganic nitrogen source utilization phenotype where the ability to use an inorganic N-containing compound as the source of nitrogen is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007305 ! altered utilization of inorganic nitrogen source created_by: DeborahSiegele creation_date: 2013-09-28T21:05:18Z [Term] id: OMP:0007034 name: utilization of inorganic nitrogen phenotype def: "An inorganic nitrogen source utilization phenotype where an inorganic N-containing compound can be used as a nitrogen source." [OMP:DAS] is_a: OMP:0007013 ! inorganic nitrogen source utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-28T21:05:43Z [Term] id: OMP:0007035 name: decreased utilization of organic nitrogen source def: "An organic nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007014 ! organic nitrogen source utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-28T21:07:53Z [Term] id: OMP:0007036 name: increased utilization of organic nitrogen source def: "An organic nitrogen source utilization phenotype where the ability to use an organic N-containing compound as the source of nitrogen is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007014 ! organic nitrogen source utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-28T21:07:58Z [Term] id: OMP:0007037 name: utilization of organic nitrogen phenotype def: "An organic nitrogen source utilization phenotype where an organism can use an organic N-containing compound as the source of nitrogen." [OMP:DAS] is_a: OMP:0007014 ! organic nitrogen source utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-28T21:08:02Z [Term] id: OMP:0007038 name: amino acid requirement def: "A requires growth factor(s) phenotype where the required growth factor is an amino acid." [OMP:DAS] synonym: "homocysteine requirement" NARROW [CHEBI:17230] synonym: "isoleucine requirement" NARROW [CHEBI:24898] synonym: "methionine requirement" NARROW [CHEBI:16811] synonym: "valine requirement" NARROW [CHEBI:27266] is_a: OMP:0007069 ! requires growth factor(s) created_by: DeborahSiegele creation_date: 2013-09-29T00:27:05Z [Term] id: OMP:0007039 name: purine requirement def: "A requires growth factor(s) phenotype where the required growth factor is a purine base." [OMP:DAS] synonym: "adenine requirement" NARROW [CHEBI:16708] is_a: OMP:0007069 ! requires growth factor(s) created_by: DeborahSiegele creation_date: 2013-09-29T00:33:05Z [Term] id: OMP:0007040 name: vitamin/enzyme cofactor requirement def: "A requires growth factor(s) phenotype where the required growth factor is a vitamin or enzyme cofactor." [OMP:DAS] is_a: OMP:0007069 ! requires growth factor(s) created_by: DeborahSiegele creation_date: 2013-09-29T00:36:46Z [Term] id: OMP:0007041 name: decreased positive chemotaxis def: "A decreased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0000503 ! decreased chemotaxis created_by: dsiegele creation_date: 2014-08-07T18:37:42Z [Term] id: OMP:0007042 name: sulfur source utilization phenotype def: "A nutrient utilization phenotype where the nutrient is used as a source of sulfur." [OMP:DAS] is_a: OMP:0006022 ! nutrient utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-29T09:39:03Z [Term] id: OMP:0007043 name: phosphorus source utilization phenotype def: "A nutrient utilization phenotype where the nutrient is being used as a source of phosphorus." [OMP:DAS] is_a: OMP:0006022 ! nutrient utilization phenotype created_by: DeborahSiegele creation_date: 2013-09-29T09:41:48Z [Term] id: OMP:0007044 name: growth factor requirement phenotype def: "A nutrient utilization phenotype related to whether an organism requires an essential organic compound (growth factor) for growth and reproduction." [ISBN:9780878936083, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0006022 ! nutrient utilization phenotype created_by: siegele creation_date: 2013-10-01T15:07:53Z [Term] id: OMP:0007045 name: inorganic phosphorus source utilization def: "A phosphorus source utilization phenotype where an inorganic P-containing compound is used as the source of phosphorus." [OMP:DAS] is_a: OMP:0007043 ! phosphorus source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:17:10Z [Term] id: OMP:0007046 name: organic phosphorus source utilization def: "A phosphorus source utilization phenotype where an organic P-containing compound is used as the source of phosphorus." [OMP:DAS] is_a: OMP:0007043 ! phosphorus source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:17:10Z [Term] id: OMP:0007047 name: decreased utilization of inorganic phosphorus source def: "An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007213 ! altered inorganic phosphorus source utilization created_by: siegele creation_date: 2013-10-01T15:19:36Z [Term] id: OMP:0007048 name: increased utilization of inorganic phosphorus source def: "An inorganic phosphorus source utilization phenotype where the ability to use an inorganic P-containing compound as the source of phosphorus is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007213 ! altered inorganic phosphorus source utilization created_by: siegele creation_date: 2013-10-01T15:19:36Z [Term] id: OMP:0007049 name: utilization of inorganic phosphorus phenotype def: "An inorganic phosphorus source utilization phenotype where an organism can use an inorganic P-containing compound as the source of phosphorus." [OMP:DAS] comment: This term was made obsolete because it is redundant with OMP:0007045. is_obsolete: true created_by: siegele creation_date: 2013-10-01T15:19:36Z [Term] id: OMP:0007050 name: decreased utilization of organic phosphorus source def: "An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007214 ! altered organic phosphorus source utilization created_by: siegele creation_date: 2013-10-01T15:20:22Z [Term] id: OMP:0007051 name: increased utilization of organic phosphorus source def: "An organic phosphorus source utilization phenotype where the ability to use an organic P-containing compound as the source of phosphorus is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007214 ! altered organic phosphorus source utilization created_by: siegele creation_date: 2013-10-01T15:20:22Z [Term] id: OMP:0007052 name: utilization of organic phosphorus def: "An organic phosphorus source utilization phenotype where an organism can use an organic P-containing compound as the source of phosphorus." [OMP:DAS] comment: This term was made obsolete because it is redunant with OMP:0007046. is_obsolete: true created_by: siegele creation_date: 2013-10-01T15:20:22Z [Term] id: OMP:0007053 name: increased positive chemotaxis def: "An increased chemotaxis phenotype where the frequency, rate, timing, or extent of positive chemotaxis by a motile microbe is increased relative to a designated control." [OMP:DAS] is_a: OMP:0000505 ! increased chemotaxis created_by: dsiegele creation_date: 2014-08-08T18:08:51Z [Term] id: OMP:0007054 name: increased negative chemotaxis def: "An increased chemotaxis phenotype where the frequency, rate, timing, or extent of negative chemotaxis by a motile microbe is increased relative to a designated control." [OMP:DAS] is_a: OMP:0000505 ! increased chemotaxis created_by: dsiegele creation_date: 2014-08-08T18:08:51Z [Term] id: OMP:0007055 name: decreased utilization of inorganic sulfur def: "An inorganic sulfur source utilization phenotype where the organism has decreased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control." [OMP:DAS] is_a: OMP:0007086 ! altered sulfur source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:33:08Z [Term] id: OMP:0007056 name: increased utilization of inorganic sulfur def: "An inorganic sulfur source utilization phenotype where the organism has increased ability to use an inorganic S-containing compound as the source of sulfur relative to a designated control." [OMP:DAS] is_a: OMP:0007086 ! altered sulfur source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:33:32Z [Term] id: OMP:0007057 name: presence of inorganic sulfur utilization def: "A sulfur source utilization phenotype where an organism uses an inorganic S-containing compound as the source of sulfur." [OMP:DAS] is_a: OMP:0007042 ! sulfur source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:33:38Z [Term] id: OMP:0007058 name: decreased utilization of organic sulfur source def: "An organic sulfur source utilization phenotype where the organism has decreased ability to use an organic S-containing compound as the source of sulfur relative to a designated control." [OMP:DAS] is_a: OMP:0007086 ! altered sulfur source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:34:00Z [Term] id: OMP:0007059 name: increased utilization of organic sulfur def: "An organic sulfur source utilization phenotype where the organism has increased ability to use an organic S-containing compound as the source of sulfur relative to a designated control." [OMP:DAS] is_a: OMP:0007086 ! altered sulfur source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:34:05Z [Term] id: OMP:0007060 name: presence of organic sulfur utilization def: "A sulfur source utilization phenotype where an organism uses an organic S-containing compound as the source of sulfur." [OMP:DAS] is_a: OMP:0007042 ! sulfur source utilization phenotype created_by: siegele creation_date: 2013-10-01T15:34:09Z [Term] id: OMP:0007061 name: iron source utilization phenotype def: "A nutrient utilization phenotype where the nutrient is being used as a source of iron." [OMP:JCH] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0006022 ! nutrient utilization phenotype created_by: siegele creation_date: 2013-10-01T15:46:38Z [Term] id: OMP:0007062 name: increased heterocyst formation def: "A heterocyst formation phenotype where the ability to form heterocysts is increased relative to a designated control." [OMP:DAS] is_a: OMP:0006007 ! altered heterocyst formation created_by: DeborahSiegele creation_date: 2014-01-31T18:31:01Z [Term] id: OMP:0007063 name: increased myxospore formation def: "An altered myxospore formation phenotype where the rate, frequency, timing, or extent of myxospore formation is increased relative to a designated control." [OMP:DAS] is_a: OMP:0006009 ! altered myxospore formation intersection_of: OMP:0006009 ! altered myxospore formation intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: DeborahSiegele creation_date: 2014-01-31T18:45:09Z [Term] id: OMP:0007064 name: phototrophic phenotype def: "An energy metabolism phenotype where light is used as the energy source." [ISBN:978-0-07-340240-6, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "phototroph " RELATED [] is_a: OMP:0000224 ! energy metabolism phenotype created_by: DeborahSiegele creation_date: 2014-01-31T18:49:00Z [Term] id: OMP:0007065 name: pteridine resistance phenotype def: "An antimicrobial compound resistance phenotype related to resistance or sensitivity to an organonitrogen heterocyclic compound." [CHEBI:26373, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "antifolate resistance" BROAD [CHEBI:73913] synonym: "methotrexate resistance phenotype" NARROW [CHEBI:44185] synonym: "pteridine sensitivity phenotype" RELATED [] xref: CHEBI:26373 is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2014-02-03T15:39:56Z [Term] id: OMP:0007066 name: asexual reproduction phenotype def: "A microbial phenotype related to asexual reproduction, the biological process in which new individuals are produced by either a single cell or by a group of cells in the absence of any sexual process." [ISBN:0673521435, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0019954 "asexual reproduction" is_a: OMP:0007167 ! population growth phenotype intersection_of: OMP:0007167 ! population growth phenotype intersection_of: inheres_in GO:0019954 ! asexual reproduction relationship: inheres_in GO:0019954 ! asexual reproduction created_by: siegele creation_date: 2014-02-03T15:55:25Z [Term] id: OMP:0007067 name: binary fission phenotype def: "An asexual reproduction phenotype related to the process of binary fission, where a parental cell divides into two daughter cells of approximately equal size and shape." [ISBN:0673521435, OMP:DAS] xref: GO:0043093 "cytokinesis by binary fission" is_a: OMP:0007066 ! asexual reproduction phenotype created_by: siegele creation_date: 2014-02-03T15:55:54Z [Term] id: OMP:0007068 name: multiple fission phenotype def: "An asexual reproduction phenotype related to the process of multiple fission, where the genome is multiplied multiple times prior to division of the cytoplasm and formation of multiple daughter cells." [ISBN:9781593392925, OMP:JCH] synonym: "baeocyte formation" NARROW [] is_a: OMP:0007066 ! asexual reproduction phenotype created_by: siegele creation_date: 2014-02-03T16:09:27Z [Term] id: OMP:0007069 name: requires growth factor(s) def: "A growth factor requirement phenotype where an organism is unable to synthesize an organic compound required for its growth and reproduction." [OMP:DAS] synonym: "auxotroph" EXACT [] synonym: "auxotrophic" EXACT [] is_a: OMP:0007044 ! growth factor requirement phenotype created_by: siegele creation_date: 2014-02-21T15:07:59Z [Term] id: OMP:0007070 name: decreased carbon source utilization def: "An altered carbon source utilization phenotype where the ability to use a particular carbon source is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007078 ! altered carbon source utilization created_by: siegele creation_date: 2014-02-21T15:18:08Z [Term] id: OMP:0007071 name: increased carbon source utilization def: "An altered carbon source utilization phenotype where the ability to use a particular carbon source is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007078 ! altered carbon source utilization created_by: siegele creation_date: 2014-02-21T15:18:41Z [Term] id: OMP:0007072 name: anaerobic respiration phenotype def: "A respiration phenotype where electrons are transferred to a final electron acceptor that is not oxygen (O2)." [ISBN:978-0-07-340240-6, OMP:DAS] is_a: OMP:0007112 ! respiration phenotype created_by: siegele creation_date: 2014-02-21T15:28:04Z [Term] id: OMP:0007073 name: fermentation phenotype def: "An energy metabolism phenotype where electrons derived from oxidation of a nutrient are transferred to an endogenous terminal electron acceptor without the involvement of an electron transport chain." [ISBN:978-0-07-340240-6, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000224 ! energy metabolism phenotype created_by: siegele creation_date: 2014-02-21T15:31:32Z [Term] id: OMP:0007074 name: increased growth factor requirement def: "A growth factor requirement phenotype where an organism's requirement for one or more growth factors is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007079 ! altered growth factor requirement created_by: siegele creation_date: 2014-02-21T15:42:23Z [Term] id: OMP:0007075 name: decreased growth factor requirement def: "A growth factor requirement phenotype where the requirement for one or more growth factors is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007079 ! altered growth factor requirement created_by: siegele creation_date: 2014-02-21T15:42:44Z [Term] id: OMP:0007076 name: altered aerotaxis def: "An aerotaxis phenotype where the frequency, rate, timing, or extent of directed movement in response to environmental oxygen is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000047 ! aerotaxis phenotype is_a: OMP:0007127 ! altered taxis intersection_of: OMP:0000047 ! aerotaxis phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-04-24T17:41:34Z [Term] id: OMP:0007077 name: altered chemotaxis def: "A chemotaxis phenotype where the frequency, rate, timing, or extent of chemotaxis by a motile microbe is altered relative to a designated control." [OMP:JCH] is_a: OMP:0000048 ! chemotaxis phenotype is_a: OMP:0007127 ! altered taxis created_by: siegele creation_date: 2014-04-24T17:43:04Z [Term] id: OMP:0007078 name: altered carbon source utilization def: "An altered nutrient utilization phenotype altered relative to a designated control." [OMP:JCH] is_a: OMP:0006023 ! carbon source utilization phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2014-04-30T15:40:12Z [Term] id: OMP:0007079 name: altered growth factor requirement def: "A growth factor requirement phenotype where an organism's requirement for a growth factor for growth and reproduction is altered relative to a designated control." [OMP:JCH] is_a: OMP:0007044 ! growth factor requirement phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2014-04-30T15:52:18Z [Term] id: OMP:0007080 name: altered gene expression def: "A gene expression phenotype where expression of a gene or genes is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000253 ! gene expression phenotype is_a: OMP:0007085 ! altered microbial phenotype intersection_of: OMP:0000253 ! gene expression phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: dsiegele creation_date: 2014-08-11T16:32:07Z [Term] id: OMP:0007081 name: altered purine requirement def: "An altered growth factor requirement phenotype where the requirement for a purine base as a growth factor is altered relative to a designated control." [OMP:JCH] is_a: OMP:0007079 ! altered growth factor requirement created_by: siegele creation_date: 2014-04-30T16:03:42Z [Term] id: OMP:0007082 name: altered vitamin/enzyme cofactor requirement def: "An altered growth factor requirement phenotype where the requirement for a vitamin/enzyme cofactor in the growth medium s altered relative to a designated control." [OMP:JCH] is_a: OMP:0007079 ! altered growth factor requirement created_by: siegele creation_date: 2014-04-30T16:07:16Z [Term] id: OMP:0007083 name: altered cell size def: "A cell size phenotype where the size of a cell is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000074 ! cell size phenotype is_a: OMP:0007103 ! altered cell morphology created_by: siegele creation_date: 2014-07-06T14:41:49Z [Term] id: OMP:0007084 name: decreased cell length def: "An altered cell size phenotype where the long axis of a cell or cells is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0000040 ! decreased cell size created_by: siegele creation_date: 2014-07-06T14:43:59Z [Term] id: OMP:0007085 name: altered microbial phenotype def: "A microbial phenotype that is altered in some way relative to a designated control." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000000 ! microbial phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-07-10T12:28:36Z [Term] id: OMP:0007086 name: altered sulfur source utilization phenotype def: "A sulfur source utilization phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007042 ! sulfur source utilization phenotype created_by: siegele creation_date: 2014-07-10T12:40:51Z [Term] id: OMP:0007087 name: altered iron source utilization phenotype def: "An iron source utilization phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007061 ! iron source utilization phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2014-07-10T12:48:21Z [Term] id: OMP:0007088 name: altered heme utilization phenotype def: "A heme utilization phenotype altered relative to a designated control." [OMP:JCH] is_a: OMP:0000451 ! heme utilization phenotype created_by: siegele creation_date: 2014-07-10T12:49:28Z [Term] id: OMP:0007089 name: abolished heme utilization def: "A decreased heme utilization phenotype where the ability to utilize heme as a source of iron is abolished." [OMP:JCH] is_a: OMP:0000453 ! decreased heme utilization is_a: OMP:0000454 ! absence of heme utilization created_by: siegele creation_date: 2014-07-10T12:51:30Z [Term] id: OMP:0007090 name: more rod-like def: "An altered cell shape phenotype where a cell's shape is more rod-like than that of a designated control." [OMP:DAS] is_a: OMP:0007099 ! cylindrical cell shape is_a: OMP:0007101 ! altered cell shape created_by: siegele creation_date: 2014-07-10T21:50:33Z [Term] id: OMP:0007091 name: decreased motility by gliding def: "A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by gliding is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0000002 ! decreased motility is_a: OMP:0007492 ! altered motility by gliding created_by: siegele creation_date: 2014-07-10T20:08:43Z [Term] id: OMP:0007092 name: decreased motility by swarming def: "A decreased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0000002 ! decreased motility is_a: OMP:0005323 ! altered cell motility by swarming created_by: siegele creation_date: 2014-07-10T20:08:43Z [Term] id: OMP:0007093 name: decreased cell motility by swimming def: "A decreased motility phenotype where the frequency, rate, timing, or extent of cell motility by swimming is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0000002 ! decreased motility is_a: OMP:0005324 ! altered cell motility by swimming created_by: siegele creation_date: 2014-07-10T20:08:43Z [Term] id: OMP:0007094 name: decreased motility by twitching def: "A decreased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is decreased relative to a designated control." [OMP:JCH] is_a: OMP:0000002 ! decreased motility is_a: OMP:0007493 ! altered cell motility by twitching created_by: siegele creation_date: 2014-07-10T20:08:43Z [Term] id: OMP:0007095 name: increased motility by gliding def: "An increased motility phenotype where the frequency, rate, timing, or extent of motility by gliding is increased relative to a designated control." [OMP:JCH] is_a: OMP:0000045 ! increased motility is_a: OMP:0007492 ! altered motility by gliding created_by: siegele creation_date: 2014-07-10T20:10:11Z [Term] id: OMP:0007096 name: increased motility by swarming def: "An increased motility phenotype where the frequency, rate, timing, or extent of motility by swarming is increased relative to a designated control." [OMP:JCH] is_a: OMP:0000045 ! increased motility is_a: OMP:0005323 ! altered cell motility by swarming created_by: siegele creation_date: 2014-07-10T20:10:11Z [Term] id: OMP:0007097 name: increased motility by swimming def: "An increased motility phenotype where the frequency, rate, timing, or extent of motility by swimming is increased relative to a designated control." [OMP:JCH] is_a: OMP:0000045 ! increased motility is_a: OMP:0005324 ! altered cell motility by swimming created_by: siegele creation_date: 2014-07-10T20:10:11Z [Term] id: OMP:0007098 name: increased motility by twitching def: "An increased motility phenotype where the frequency, rate, timing, or extent of motility by twitching is increased relative to a designated control." [OMP:JCH] is_a: OMP:0000045 ! increased motility is_a: OMP:0007493 ! altered cell motility by twitching created_by: siegele creation_date: 2014-07-10T20:10:11Z [Term] id: OMP:0007099 name: cylindrical cell shape def: "A cell shape phenotype where a cell has a consistently-sized round cross section. The long axis of the cell is typically longer than the cell diameter." [OMP:DAS] xref: PATO:0001873 is_a: OMP:0000073 ! cell shape phenotype created_by: siegele creation_date: 2014-07-10T20:13:46Z [Term] id: OMP:0007100 name: spheroid cell shape def: "A cell shape phenotype where a cell has a sphere-like shape, i.e. quadric surface in three dimensions obtained by rotating an ellipse about one of its principle axes." [OMP:DAS] xref: PATO:0001865 is_a: OMP:0000073 ! cell shape phenotype created_by: siegele creation_date: 2014-07-10T20:13:46Z [Term] id: OMP:0007101 name: altered cell shape def: "A cell shape phenotype where the shape of a cell is altered relative to a designated control." [OMP:DAS] xref: APO:\:0000051 "cell shape" is_a: OMP:0000073 ! cell shape phenotype is_a: OMP:0007103 ! altered cell morphology intersection_of: OMP:0000073 ! cell shape phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-07-10T20:24:53Z [Term] id: OMP:0007102 name: more round def: "An altered cell shape phenotype where a cell's shape is rounder than that of a designated control." [OMP:DAS] is_a: OMP:0007100 ! spheroid cell shape is_a: OMP:0007101 ! altered cell shape created_by: siegele creation_date: 2014-07-10T21:51:13Z [Term] id: OMP:0007103 name: altered cell morphology def: "A cell morphology phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000071 ! cell morphology phenotype is_a: OMP:0007085 ! altered microbial phenotype intersection_of: OMP:0000071 ! cell morphology phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-07-10T22:43:40Z [Term] id: OMP:0007104 name: altered nutrient utilization def: "A nutrient utilization phenotype that is altered relative to a designated control." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0006022 ! nutrient utilization phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: siegele creation_date: 2014-07-10T22:45:48Z [Term] id: OMP:0007105 name: altered flagellum def: "A flagellum phenotype where the composition, structure, or number of flagella is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000027 ! flagellum morphology phenotype created_by: siegele creation_date: 2014-07-10T23:00:30Z [Term] id: OMP:0007106 name: transcription phenotype def: "A gene expression phenotype that affects DNA-dependent transcription." [GO:0006351, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0006351 "transcription, DNA-templated" is_a: OMP:0000253 ! gene expression phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0006351 ! transcription, DNA-templated relationship: inheres_in GO:0006351 ! transcription, DNA-templated created_by: dsiegele creation_date: 2014-08-11T16:37:39Z [Term] id: OMP:0007107 name: translation phenotype def: "A gene expression phenotype that affects translation of one or more mRNAs." [GO:0006412, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000291 "translation phenotype" xref: GO:0006412 "translation" is_a: OMP:0000253 ! gene expression phenotype intersection_of: OMP:0000253 ! gene expression phenotype intersection_of: inheres_in GO:0006412 ! translation relationship: inheres_in GO:0006412 ! translation created_by: dsiegele creation_date: 2014-08-11T16:37:39Z [Term] id: OMP:0007108 name: altered transcription def: "A transcription phenotype where transcription of a gene or genes is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007080 ! altered gene expression is_a: OMP:0007106 ! transcription phenotype intersection_of: OMP:0007106 ! transcription phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: dsiegele creation_date: 2014-08-11T16:37:59Z [Term] id: OMP:0007109 name: chemotrophic phenotype def: "An energy metabolism phenotype where energy is obtained from the oxidation of chemicals." [ISBN:978-0-07-340240-6, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000224 ! energy metabolism phenotype created_by: siegele creation_date: 2014-07-17T13:45:13Z [Term] id: OMP:0007110 name: chemolithotrophic def: "A chemotrophic phenotype where energy is obtained from the oxidation of inorganic chemicals." [ISBN:978-0-07-340240-6, OMP:DAS] is_a: OMP:0007109 ! chemotrophic phenotype created_by: siegele creation_date: 2014-07-17T13:46:04Z [Term] id: OMP:0007111 name: chemoorganotrophic def: "A chemotrophic phenotype where energy is derived from the oxidation of organic molecules." [ISBN:978-0-07-340240-6, OMP:DAS] synonym: "organotroph" EXACT [] is_a: OMP:0007109 ! chemotrophic phenotype created_by: siegele creation_date: 2014-07-17T13:46:04Z [Term] id: OMP:0007112 name: respiration phenotype def: "An energy metabolism phenotype where electrons from an oxidized chemical are transferred via an electron transport chain to an exogenous electron acceptor." [ISBN:978-0-07-340240-6, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0045333 "cellular respiration" is_a: OMP:0000224 ! energy metabolism phenotype created_by: siegele creation_date: 2014-07-17T13:56:17Z [Term] id: OMP:0007113 name: ferrous iron (Fe2+) oxidation def: "A chemolithotrophic phenotype where energy is obtained from the oxidation of ferrous iron (Fe2+)." [ISBN:978-0-07-340240-6, OMP:DAS] is_a: OMP:0007110 ! chemolithotrophic created_by: siegele creation_date: 2014-07-17T14:28:35Z [Term] id: OMP:0007114 name: sulfide (H2S) oxidation def: "A chemolithotrophic phenotype where energy is derived from the oxidation of hydrogen sulfide (H2S)." [ISBN:978-0-07-340240-6, OMP:DAS] is_a: OMP:0007110 ! chemolithotrophic created_by: siegele creation_date: 2014-07-17T14:28:35Z [Term] id: OMP:0007115 name: altered growth rate def: "A population growth phenotype where the rate at which a cell or cells multiplies is altered relative to a designated control." [OMP:DAS] synonym: "altered doubling time" EXACT [] synonym: "altered generation time" RELATED [] is_a: OMP:0007156 ! growth rate phenotype is_a: OMP:0007157 ! altered population growth created_by: siegele creation_date: 2014-07-17T16:29:34Z [Term] id: OMP:0007116 name: altered cell stalk def: "An altered cell shape phenotype where the stalk of a stalk-shaped cell is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000128 ! stalked cell shape is_a: OMP:0007101 ! altered cell shape created_by: siegele creation_date: 2014-07-18T13:53:13Z [Term] id: OMP:0007117 name: increased transcription def: "An altered transcription phenotype where transcription of a gene or genes is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007108 ! altered transcription intersection_of: OMP:0007108 ! altered transcription intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: dsiegele creation_date: 2014-08-11T16:41:06Z [Term] id: OMP:0007118 name: decreased transcription def: "An altered transcription phenotype where transcription of a gene or genes is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007108 ! altered transcription intersection_of: OMP:0007108 ! altered transcription intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: dsiegele creation_date: 2014-08-11T16:41:06Z [Term] id: OMP:0007119 name: abolished transcription def: "A decreased transcription phenotype where transcription of a gene or genes is abolished relative to a designated control." [OMP:DAS] is_a: OMP:0007118 ! decreased transcription intersection_of: OMP:0007118 ! decreased transcription intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: dsiegele creation_date: 2014-08-11T16:42:21Z [Term] id: OMP:0007120 name: decreased transcription of sigma-factor dependent genes def: "A decreased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is decreased relative to a designated control." [OMP:DAS] comment: The UniProt accession for the particular sigma factor should be entered in the extension field. is_a: OMP:0007118 ! decreased transcription created_by: dsiegele creation_date: 2014-08-11T16:57:46Z [Term] id: OMP:0007121 name: increased transcription of sigma-factor dependent genes def: "An increased transcription phenotype where transcription of a gene or genes dependent upon a particular sigma factor is increased relative to a designated control." [OMP:DAS] comment: The UniProt accession for the particular sigma factor should be entered in the extension field. is_a: OMP:0007117 ! increased transcription created_by: dsiegele creation_date: 2014-08-11T17:02:37Z [Term] id: OMP:0007122 name: altered translation def: "A translation phenotype where translation of one or more mRNAs is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007080 ! altered gene expression is_a: OMP:0007107 ! translation phenotype created_by: dsiegele creation_date: 2014-08-11T17:07:54Z [Term] id: OMP:0007123 name: Increased translation def: "An altered translation phenotype where translation of one or more mRNAs is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007122 ! altered translation created_by: dsiegele creation_date: 2014-08-11T17:10:06Z [Term] id: OMP:0007124 name: decreased translation def: "An altered translation phenotype where translation of one or more mRNAs is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007122 ! altered translation created_by: dsiegele creation_date: 2014-08-11T17:10:06Z [Term] id: OMP:0007125 name: abolished translation def: "A decreased translation phenotype where translation of one or more mRNAs is abolished." [OMP:DAS] is_a: OMP:0007124 ! decreased translation created_by: dsiegele creation_date: 2014-08-11T17:10:06Z [Term] id: OMP:0007126 name: viscous colony consistency def: "A colony consistency phenotype where a colony or colonies have a sticky or gummy consistency." [ISBN:1555810489, OMP:WAM] xref: SNOMEDCT:16601003 "Bacterial colony consistency, viscous" is_a: OMP:0000229 ! colony consistency phenotype created_by: dsiegele creation_date: 2014-08-11T17:58:30Z [Term] id: OMP:0007127 name: altered taxis def: "A taxis phenotype where the frequency, rate, timing, or extent of directed movement of a microbe in response to an external stimulus is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000004 ! taxis phenotype is_a: OMP:0007085 ! altered microbial phenotype intersection_of: OMP:0000004 ! taxis phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: dsiegele creation_date: 2014-08-12T13:30:01Z [Term] id: OMP:0007128 name: altered cell arrangement def: "A cell arrangement phenotype where the arrangement of cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000003 ! cell arrangement phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: dsiegele creation_date: 2014-08-12T13:36:13Z [Term] id: OMP:0007129 name: altered outer membrane vesicle production def: "An altered outer membrane vesicles phenotypes where the production of outer membrane vesicles is altered relative to a designated control." [OMP:DAS] is_a: OMP:0006156 ! altered outer membrane vesicles created_by: dsiegele creation_date: 2014-08-14T18:22:16Z [Term] id: OMP:0007130 name: differential test phenotype def: "A microbial phenotype related to the presence or absence of a biochemical activity in a test used to differentiate and identify microorganisms." [ISBN:9780895828309, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2014-08-16T16:40:58Z [Term] id: OMP:0007131 name: altered differential test result def: "A differential media phenotype where the results of a differential test are altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007130 ! differential test phenotype created_by: siegele creation_date: 2014-08-16T16:44:03Z [Term] id: OMP:0007132 name: decreased flagellum length def: "An altered flagellum length phenotype where the length of the flagellum is shorter than a designated control." [OMP:DAS] is_a: OMP:0000024 ! altered flagellum length created_by: siegele creation_date: 2014-08-17T00:46:29Z [Term] id: OMP:0007133 name: altered capsule phenotype def: "A capsule phenotype where the capsule layer is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000203 ! capsule phenotype created_by: siegele creation_date: 2014-08-17T12:52:35Z [Term] id: OMP:0007134 name: altered antimicrobial agent resistance phenotype def: "An antimicrobial agent resistance phenotype where resistance or sensitivity to an antimicrobial agent is altered relative to a designated control." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000274 ! antimicrobial agent resistance phenotype is_a: OMP:0007085 ! altered microbial phenotype intersection_of: OMP:0000274 ! antimicrobial agent resistance phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: siegele creation_date: 2014-08-17T13:12:31Z [Term] id: OMP:0007135 name: not resistant to alkaloid def: "An alkaloid resistance phenotype where a cell or cells lack resistance to an alkaloid compound." [OMP:DAS] is_a: OMP:0000455 ! alkaloid resistance phenotype created_by: siegele creation_date: 2014-08-17T13:19:30Z [Term] id: OMP:0007136 name: resistant to alkaloid def: "An alkaloid resistance phenotype where an organism or cell is resistant to one or more alkaloid compounds." [OMP:DAS] is_a: OMP:0000455 ! alkaloid resistance phenotype created_by: siegele creation_date: 2014-08-17T13:19:30Z [Term] id: OMP:0007137 name: altered alkaloid resistance def: "An alkaloid resistance phenotype where resistance to an alkaloid compound is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000455 ! alkaloid resistance phenotype is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype created_by: siegele creation_date: 2014-08-17T13:19:30Z [Term] id: OMP:0007138 name: altered pH growth range def: "A pH growth range phenotype where the range of pH where growth occurs is altered relative to a designated control." [OMP:DAS] is_a: OMP:0005008 ! pH growth range phenotype created_by: siegele creation_date: 2014-08-17T17:35:20Z [Term] id: OMP:0007139 name: altered lantibiotic resistance phenotype def: "A lantibiotic resistance phenotype where resistance to one or more lantibiotics is altered relative to a designated control." [OMP:DAS] synonym: "lantibiotic sensitivity phenotype" RELATED [] is_a: OMP:0006011 ! lantibiotic resistance phenotype is_a: OMP:0006020 ! altered bacteriocin resistance created_by: siegele creation_date: 2014-08-17T18:03:16Z [Term] id: OMP:0007140 name: schizogeny phenotype def: "A multiple fission phenotype related to the process of schizogeny, where the nucleus of the parent cell divides multiple times before the cytoplasm separates and each nucleus is encased in its own membrane to form an individual cell." [ISBN:9781593392925, OMP:DAS] xref: GO:0020014 "schizogeny" is_a: OMP:0007068 ! multiple fission phenotype created_by: siegele creation_date: 2014-08-18T17:02:12Z [Term] id: OMP:0007141 name: presence of schizogeny def: "A schizogeny phenotype where an organism reproduces by the process of schizogeny." [OMP:DAS] is_a: OMP:0006173 ! presence of multiple fission is_a: OMP:0007140 ! schizogeny phenotype created_by: siegele creation_date: 2014-08-18T17:12:34Z [Term] id: OMP:0007142 name: asexual sporulation phenotype def: "A sporulation phenotype related to the formation of spores derived from the products of mitosis." [GO:0030436, OMP:DAS, PMID:9781593392925] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "mitotic spore formation" RELATED [] xref: GO:0030436 "asexual sporulation" is_a: OMP:0000091 ! sporulation phenotype is_a: OMP:0007066 ! asexual reproduction phenotype created_by: siegele creation_date: 2014-08-18T17:15:43Z [Term] id: OMP:0007143 name: presence of asexual sporulation def: "An asexual sporulation phenotype where an organism reproduces by the process of forming mitotic spores." [OMP:DAS] is_a: OMP:0007142 ! asexual sporulation phenotype created_by: siegele creation_date: 2014-08-18T17:19:11Z [Term] id: OMP:0007144 name: altered asexual reproduction def: "An asexual reproduction phenotype where the rate, frequency, timing, or extent of asexual reproduction is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007066 ! asexual reproduction phenotype is_a: OMP:0007157 ! altered population growth created_by: siegele creation_date: 2014-08-18T17:22:42Z [Term] id: OMP:0007145 name: altered asexual sporulation def: "An asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming mitotic spores is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007142 ! asexual sporulation phenotype is_a: OMP:0007144 ! altered asexual reproduction created_by: siegele creation_date: 2014-08-18T17:23:30Z [Term] id: OMP:0007146 name: altered schizogeny def: "A schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is altered relative to a designated control." [OMP:DAS] is_a: OMP:0006174 ! altered multiple fission is_a: OMP:0007140 ! schizogeny phenotype created_by: siegele creation_date: 2014-08-18T17:24:18Z [Term] id: OMP:0007147 name: altered DNA replication def: "A DNA replication phenotype in which the process of DNA replication is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000307 ! DNA replication phenotype is_a: OMP:0005136 ! altered cell cycle is_a: OMP:0007351 ! altered biological process intersection_of: OMP:0000307 ! DNA replication phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: siegele creation_date: 2014-08-19T14:26:57Z [Term] id: OMP:0007148 name: cytokinesis phenotype def: "A cell cycle phenotype related to the process in a proliferating cell or organism in which the cytoplasm and cell envelope are separation into two or more daughter cells." [OMP:DAS] xref: GO:0000910 "cytokinesis" is_a: OMP:0005115 ! cell cycle phenotype created_by: siegele creation_date: 2014-08-19T14:37:21Z [Term] id: OMP:0007149 name: septation phenotype def: "A cytokinesis phenotype related to the process of forming a septum that separates daughter cells." [OMP:DAS] is_a: OMP:0007148 ! cytokinesis phenotype created_by: siegele creation_date: 2014-08-19T14:52:08Z [Term] id: OMP:0007150 name: abolished motility by gliding def: "A decreased motility by gliding phenotype where the ability of a microbe to move by gliding motility is abolished." [OMP:DAS] is_a: OMP:0007000 ! abolished motility is_a: OMP:0007091 ! decreased motility by gliding is_a: OMP:0007488 ! absence of motility by gliding created_by: siegele creation_date: 2014-08-20T23:57:11Z [Term] id: OMP:0007151 name: altered colony pigmentation def: "A colony pigmentation phenotype where the color of a colony or colonies is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000107 ! colony pigmentation phenotype created_by: siegele creation_date: 2014-08-27T22:56:03Z [Term] id: OMP:0007152 name: persister cell phenotype def: "A growth phenotype related to persister cells, which are dormant variants of vegetatively growing cells that form stochastically in microbial populations. Persister cells are highly resistant to antibiotics." [OMP:DAS, PMID:20528688] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2014-08-28T11:55:19Z [Term] id: OMP:0007153 name: altered persister cell phenotype def: "A persister cell phenotype where the character or frequency of persister cells in a microbial population is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007152 ! persister cell phenotype is_a: OMP:0007157 ! altered population growth created_by: siegele creation_date: 2014-08-28T11:57:56Z [Term] id: OMP:0007154 name: increased frequency of persister cells def: "An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007153 ! altered persister cell phenotype created_by: siegele creation_date: 2014-08-28T11:59:20Z [Term] id: OMP:0007155 name: decreased frequency of persister cells def: "An altered persister cell phenotype where the fraction of cells in a microbial population that are persister cells is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007153 ! altered persister cell phenotype created_by: siegele creation_date: 2014-08-28T12:00:42Z [Term] id: OMP:0007156 name: growth rate phenotype def: "A growth phenotype concerning the rate at which the number of organisms or cells in a microbial population increases over time." [OMP:DAS] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2014-08-28T12:14:20Z [Term] id: OMP:0007157 name: altered population growth def: "A population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007167 ! population growth phenotype is_a: OMP:0007351 ! altered biological process created_by: siegele creation_date: 2014-08-28T12:15:47Z [Term] id: OMP:0007158 name: altered response to stress phenotype def: "A response to stress response phenotype where the change in state or activity of a microbe (in terms of movement, secretion, enzyme production, gene expression, etc.) that occurs as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation) is altered relative to a designated control." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000173 ! response to stress phenotype is_a: OMP:0007157 ! altered population growth created_by: siegele creation_date: 2014-08-28T16:51:03Z [Term] id: OMP:0007159 name: altered response to radiation stress def: "A radiation stress phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0005081 ! response to radiation stress phenotype is_a: OMP:0007158 ! altered response to stress phenotype created_by: siegele creation_date: 2014-08-28T17:03:47Z [Term] id: OMP:0007160 name: altered colony morphology def: "A colony morphology phenotype where the morphology of a colony or colonies is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000100 ! colony morphology phenotype is_a: OMP:0007470 ! altered population morphology created_by: siegele creation_date: 2014-08-29T12:27:50Z [Term] id: OMP:0007161 name: regulation phenotype def: "A microbial phenotype that affects the regulation of a molecular function, biological process, or biological quality." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000145 "regulation phenotype" is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2014-09-14T14:45:03Z [Term] id: OMP:0007162 name: gene expression regulation phenotype def: "A regulation phenotype that affects the regulation of gene expression. Regulation can occur at the level transcription, translation, or turnover." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000288 "gene expression regulation phenotype" is_a: OMP:0007161 ! regulation phenotype created_by: siegele creation_date: 2014-09-14T14:47:50Z [Term] id: OMP:0007163 name: transcription regulation phenotype def: "A gene expression phenotype that affects the regulation of DNA-dependent or RNA-dependent transcription." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000143 "transcription regulation phenotype" is_a: OMP:0007162 ! gene expression regulation phenotype created_by: siegele creation_date: 2014-09-14T14:52:31Z [Term] id: OMP:0007164 name: translation regulation phenotype def: "A gene expression regulation phenotype that affects the regulation of translation." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "protein synthesis regulation" EXACT [] xref: FYPO:0000289 "translation regulation phenotype" is_a: OMP:0007162 ! gene expression regulation phenotype created_by: siegele creation_date: 2014-09-14T14:54:10Z [Term] id: OMP:0007165 name: altered septation phenotype def: "A septation phenotype where the process of forming a septum between daughter cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007149 ! septation phenotype created_by: siegele creation_date: 2014-09-14T15:35:53Z [Term] id: OMP:0007166 name: altered cytokinesis def: "A cytokinesis phenotype where the process of cytokinesis is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007148 ! cytokinesis phenotype created_by: siegele creation_date: 2014-09-14T15:36:38Z [Term] id: OMP:0007167 name: population growth phenotype def: "A microbial phenotype that affects the rate or extent of increase in the number of individuals in a microbial population as the result of sexual or asexual reproduction." [FYPO:0001358, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. xref: GO:0000003 "reproduction" is_a: OMP:0007006 ! population phenotype is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0000003 ! reproduction relationship: inheres_in GO:0000003 ! reproduction created_by: siegele creation_date: 2014-09-25T17:14:07Z [Term] id: OMP:0007168 name: abolished septation def: "A decreased septation phenotype where formation of new cell septa is abolished." [OMP:DAS] is_a: OMP:0005138 ! decreased septation created_by: siegele creation_date: 2014-09-25T17:18:11Z [Term] id: OMP:0007169 name: antimicrobial peptide resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to an antimicrobial peptide." [CHEBI:25903, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "bacitracin resistance phenotype" NARROW [CHEBI:28669] synonym: "bleomycin resistance phenotype" NARROW [CHEBI:22907] synonym: "cecropin B resistance phenotype" NARROW [CID:16741200] synonym: "indolicidin resistance phenotype" NARROW [CHEBI:80180] synonym: "phleomycin resistance phenotype" NARROW [CHEBI:75044] xref: CHEBI:25903 "peptide antibiotic" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2014-09-26T15:57:03Z [Term] id: OMP:0007170 name: altered antimicrobial peptide resistance def: "An antimicrobial peptide resistance phenotype where resistance or sensitivity to one or more antimicrobial peptides is altered relative to a designated control." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007169 ! antimicrobial peptide resistance phenotype intersection_of: OMP:0007169 ! antimicrobial peptide resistance phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: siegele creation_date: 2014-09-26T16:02:16Z [Term] id: OMP:0007171 name: resistant to antimicrobial peptide def: "An antimicrobial peptide resistance phenotype where an organism or cell is resistant to one or more antimicrobial peptides." [OMP:DAS] is_a: OMP:0007169 ! antimicrobial peptide resistance phenotype intersection_of: OMP:0007169 ! antimicrobial peptide resistance phenotype intersection_of: has_quality PATO:0000467 ! present relationship: has_quality PATO:0000467 ! present created_by: siegele creation_date: 2014-09-26T16:02:16Z [Term] id: OMP:0007172 name: not resistant to antimicrobial peptide def: "An antimicrobial peptide resistance phenotype where an organism or cell is sensitive to one or more antimicrobial peptides." [OMP:DAS] is_a: OMP:0007169 ! antimicrobial peptide resistance phenotype intersection_of: OMP:0007169 ! antimicrobial peptide resistance phenotype intersection_of: has_quality PATO:0000462 ! absent relationship: has_quality PATO:0000462 ! absent created_by: siegele creation_date: 2014-09-26T16:02:16Z [Term] id: OMP:0007173 name: decreased resistance to antimicrobial peptide def: "An altered antimicrobial peptide resistance phenotype where resistance to an antimicrobial peptide is decreased relative to a designated control." [OMP:DAS] synonym: "decreased resistance to phleomycin" NARROW [CHEBI:75044] synonym: "Increased sensitivity to antimicrobial peptide" EXACT [] synonym: "increased sensitivity to phleomycin" NARROW [CHEBI:\:75044] is_a: OMP:0007170 ! altered antimicrobial peptide resistance created_by: siegele creation_date: 2014-09-26T16:02:54Z [Term] id: OMP:0007174 name: increased resistance to antimicrobial peptide def: "An altered antimicrobial peptide resistance phenotype where resistance is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007170 ! altered antimicrobial peptide resistance created_by: siegele creation_date: 2014-09-26T16:02:54Z [Term] id: OMP:0007175 name: presence of aerobic respiration def: "An aerobic respiration phenotype where an organism, cell, or cells have the ability to perform aerobic respiration." [OMP:DAS] is_a: OMP:0000216 ! aerobic respiration phenotype created_by: siegele creation_date: 2014-09-29T14:00:51Z [Term] id: OMP:0007176 name: absence of aerobic respiration def: "An aerobic respiration phenotype where an organism, cell, or cells lack the ability to perform aerobic respiration." [OMP:DAS] is_a: OMP:0000216 ! aerobic respiration phenotype created_by: siegele creation_date: 2014-09-29T14:02:56Z [Term] id: OMP:0007177 name: altered aerobic respiration def: "An aerobic respiration phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000216 ! aerobic respiration phenotype created_by: siegele creation_date: 2014-09-29T14:04:45Z [Term] id: OMP:0007178 name: increased aerobic respiration def: "An altered aerobic respiration phenotype where the ability to perform aerobic respiration is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007177 ! altered aerobic respiration created_by: siegele creation_date: 2014-09-29T14:05:44Z [Term] id: OMP:0007179 name: decreased aerobic respiration def: "An altered aerobic respiration phenotype where the ability to perform aerobic respiration is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007177 ! altered aerobic respiration created_by: siegele creation_date: 2014-09-29T14:06:33Z [Term] id: OMP:0007180 name: abolished aerobic respiration def: "A decreased aerobic respiration phenotype where the ability to perform aerobic respiration is abolished." [OMP:DAS] is_a: OMP:0007176 ! absence of aerobic respiration is_a: OMP:0007179 ! decreased aerobic respiration created_by: siegele creation_date: 2014-09-29T14:07:17Z [Term] id: OMP:0007181 name: presence of anaerobic respiration def: "An anaerobic respiration phenotype where an organism, cell, or cells have the ability to perform anaerobic respiration." [OMP:DAS] is_a: OMP:0007072 ! anaerobic respiration phenotype created_by: siegele creation_date: 2014-09-29T14:08:46Z [Term] id: OMP:0007182 name: absence of anaerobic respiration def: "An anaerobic respiration phenotype where an organism, cell, or cells lack the ability to perform anaerobic respiration." [OMP:DAS] is_a: OMP:0007072 ! anaerobic respiration phenotype created_by: siegele creation_date: 2014-09-29T14:08:46Z [Term] id: OMP:0007183 name: altered anaerobic respiration def: "An anaerobic respiration phenotype where the ability to perform anaerobic respiration is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007072 ! anaerobic respiration phenotype created_by: siegele creation_date: 2014-09-29T14:08:46Z [Term] id: OMP:0007184 name: increased anaerobic respiration def: "An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007183 ! altered anaerobic respiration created_by: siegele creation_date: 2014-09-29T14:08:46Z [Term] id: OMP:0007185 name: decreased anaerobic respiration def: "An altered anaerobic respiration phenotype where the ability to perform anaerobic respiration is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007183 ! altered anaerobic respiration created_by: siegele creation_date: 2014-09-29T14:08:46Z [Term] id: OMP:0007186 name: abolished anaerobic respiration def: "A decreased anaerobic respiration phenotype where the ability to perform anaerobic respiration is abolished." [OMP:DAS] is_a: OMP:0007182 ! absence of anaerobic respiration is_a: OMP:0007185 ! decreased anaerobic respiration created_by: siegele creation_date: 2014-09-29T14:08:46Z [Term] id: OMP:0007187 name: quality (Interim) def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities." [XX:] is_obsolete: true created_by: siegele creation_date: 2014-10-03T17:22:57Z [Term] id: OMP:0007188 name: altered_process_quality def: "A quality which inheres in an process that is altered in same way relative to a designated control." [OMP:DAS, PATO:0001236] is_a: PATO:0001236 ! process quality intersection_of: PATO:0001236 ! process quality intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-10-03T17:27:01Z [Term] id: OMP:0007189 name: altered_relative_to def: "A quality which inheres in a bearer that is altered relative to the quality that inheres in a designated control entity." [OMP:DAS] is_a: PATO:0000068 ! qualitative created_by: siegele creation_date: 2014-10-03T17:45:57Z [Term] id: OMP:0007190 name: altered dinitrogen utilization def: "A dinitrogen utilization phenotype where the ability to utilize dinitrogen is altered relative to a designated control." [OMP:DAS] is_a: OMP:0006030 ! dinitrogen utilization phenotype created_by: siegele creation_date: 2014-10-04T01:42:58Z [Term] id: OMP:0007191 name: absence of dinitrogen utilization def: "A dinitrogen utilization phenotype where an organism lacks the ability to use dinitrogen as the source of nitrogen." [OMP:DAS] is_a: OMP:0006030 ! dinitrogen utilization phenotype created_by: siegele creation_date: 2014-10-04T01:44:57Z [Term] id: OMP:0007192 name: growth range phenotype def: "A growth phenotype related to non-nutrient environmental factors and the requirements for microbial growth." [ISBN:9780073402406, OMP:DAS] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2014-10-04T18:41:07Z [Term] id: OMP:0007193 name: altered_physical_object_quality def: "A physical object quality that is altered relative to a designated control." [OMP:DAS] is_a: PATO:0001241 ! physical object quality intersection_of: PATO:0001241 ! physical object quality intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2014-10-04T19:34:54Z [Term] id: OMP:0007194 name: biological process phenotype def: "A microbial phenotype that affects a biological process." [FYPO:0000300, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000300 "biological process phenotype" xref: GO:0008150 "biological_process" is_a: OMP:0000000 ! microbial phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0008150 ! biological_process relationship: inheres_in GO:0008150 ! biological_process created_by: siegele creation_date: 2014-10-18T21:38:46Z [Term] id: OMP:0007195 name: chemical sensitivity phenotype def: "A biological process phenotype related to the resistance or sensitivity of a cell, cells, or microbe to a chemical entity." [OMP:DAS] xref: APO:0000087 "resistance to chemicals" is_a: OMP:0007194 ! biological process phenotype intersection_of: OMP:0007194 ! biological process phenotype intersection_of: has_quality PATO:0001457 ! sensitivity of a process intersection_of: towards CHEBI:24431 ! chemical entity relationship: has_quality PATO:0001457 ! sensitivity of a process relationship: towards CHEBI:24431 ! chemical entity created_by: siegele creation_date: 2014-10-18T21:39:28Z [Term] id: OMP:0007196 name: altered akinete formation def: "An akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000093 ! akinete formation phenotype is_a: OMP:0007145 ! altered asexual sporulation intersection_of: OMP:0000093 ! akinete formation phenotype intersection_of: has_quality OMP:0007188 ! altered_process_quality relationship: has_quality OMP:0007188 ! altered_process_quality created_by: siegele creation_date: 2014-10-20T15:08:04Z [Term] id: OMP:0007197 name: cellular component phenotype def: "A microbial phenotype that affects a quality of a cellular component." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: CMPO:0000259 "cellular component phenotype" xref: GO:0005575 "cellular_component" is_a: OMP:0000000 ! microbial phenotype intersection_of: OMP:0000000 ! microbial phenotype intersection_of: inheres_in GO:0005575 ! cellular_component relationship: inheres_in GO:0005575 ! cellular_component created_by: siegele creation_date: 2014-10-21T23:28:25Z [Term] id: OMP:0007198 name: presence of resistance to UV-A radiation def: "A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-A radiation (typically, wavelengths of 315-400 nm)." [ISO:21348, OMP:DAS] is_a: OMP:0007282 ! presence of UV-radiation resistance created_by: siegele creation_date: 2015-02-04T21:53:26Z [Term] id: OMP:0007199 name: presence of resistance to UV-B radiation def: "A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-B radiation (typically, wavelengths of 280-315 nm)." [ISO:21348, OMP:DAS] is_a: OMP:0007282 ! presence of UV-radiation resistance created_by: siegele creation_date: 2015-02-04T22:00:52Z [Term] id: OMP:0007200 name: presence of resistance to UV-C radiation def: "A presence of resistance to UV radiation where microbes in a population continue to grow and divide when exposed to UV-C radiation (typically, wavelengths of 100-280 nm)." [ISO:21348, OMP:DAS] is_a: OMP:0007282 ! presence of UV-radiation resistance created_by: siegele creation_date: 2015-02-04T22:02:13Z [Term] id: OMP:0007201 name: decreased resistance to UV-C radiation def: "A decreased resistance to UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0005098 ! decreased resistance to UV radiation created_by: siegele creation_date: 2015-02-04T22:03:32Z [Term] id: OMP:0007202 name: abolished resistance to UV-C radiation def: "A decreased resistance to UV-C radiation phenotype where the resistance of microbes in a population to UV-C radiation (100-280 nm) is abolished." [OMP:DAS] is_a: OMP:0007201 ! decreased resistance to UV-C radiation created_by: siegele creation_date: 2015-02-04T22:05:25Z [Term] id: OMP:0007203 name: altered gene expression regulation def: "A gene expression regulation phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007162 ! gene expression regulation phenotype created_by: siegele creation_date: 2015-02-05T11:12:46Z [Term] id: OMP:0007204 name: decreased resistance to UV-A radiation def: "A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0005098 ! decreased resistance to UV radiation created_by: siegele creation_date: 2015-02-05T11:30:34Z [Term] id: OMP:0007205 name: decreased resistance to UV-B radiation def: "A decreased resistance to UV radiation phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0005098 ! decreased resistance to UV radiation created_by: siegele creation_date: 2015-02-05T11:31:00Z [Term] id: OMP:0007206 name: increased resistance to UV-A def: "An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-A radiation (typically, 315-400 nm) is increased relative to a designated control." [OMP:DAS] is_a: OMP:0005097 ! increased resistance to UV radiation created_by: siegele creation_date: 2015-02-05T11:35:37Z [Term] id: OMP:0007207 name: increased resistance to UV-B def: "An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-B radiation (typically, 280-315 nm) is increased relative to a designated control." [OMP:DAS] is_a: OMP:0005097 ! increased resistance to UV radiation created_by: siegele creation_date: 2015-02-05T11:35:59Z [Term] id: OMP:0007208 name: increased resistance to UV-C def: "An increased UV-radiation resistance phenotype where the resistance of microbes in a population to UV-C radiation (typically, 100-280 nm) is increased relative to a designated control." [OMP:DAS] is_a: OMP:0005097 ! increased resistance to UV radiation created_by: siegele creation_date: 2015-02-05T11:36:16Z [Term] id: OMP:0007209 name: presence of RecA-mediated homologous recombination def: "A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the RecA protein." [OMP:DAS] is_a: OMP:0005051 ! presence of homologous recombination created_by: dsiegele creation_date: 2015-02-17T12:08:11Z [Term] id: OMP:0007210 name: presence of lambda Red-mediated recombination def: "A homologous recombination phenotype where homologous recombination in a cell or cells is mediated by the bacteriophage lambda Red proteins (bet-gam-exo)." [OMP:DAS] is_a: OMP:0005051 ! presence of homologous recombination created_by: dsiegele creation_date: 2015-02-17T12:13:27Z [Term] id: OMP:0007211 name: altered trace element utilization def: "A trace element utilization phenotype that is altered relative to a designated control." [OMP:DAS] synonym: "altered micronutrient utilization" EXACT [] is_a: OMP:0000450 ! trace element utilization phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2015-03-13T15:13:30Z [Term] id: OMP:0007212 name: altered phosphorus source utilization def: "A phosphorus source utilization phenotype where the ability to utilize one or more sources of phosphorus is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007043 ! phosphorus source utilization phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2015-03-13T15:23:04Z [Term] id: OMP:0007213 name: altered inorganic phosphorus source utilization def: "An altered phosphorus source utilization phenotype where the ability to utilize one or more inorganic sources of phosphorus is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007045 ! inorganic phosphorus source utilization is_a: OMP:0007212 ! altered phosphorus source utilization created_by: siegele creation_date: 2015-03-13T15:25:43Z [Term] id: OMP:0007214 name: altered organic phosphorus source utilization def: "An altered phosphorus source utilization phenotype where the ability to utilize one or more organic sources of phosphorus is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007046 ! organic phosphorus source utilization is_a: OMP:0007212 ! altered phosphorus source utilization created_by: siegele creation_date: 2015-03-13T15:29:56Z [Term] id: OMP:0007215 name: rifamycin resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to one or more rifamycin compound." [CHEBI:26580, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "rifabutin resistance phenotype" NARROW [CHEBI:45367] synonym: "rifampicin resistance phenotype" RELATED [CHEBI:28077] synonym: "rifapentine resistance phenotype" NARROW [CHEBI:45304] xref: CHEBI:26580 "rifamycin" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2015-03-15T22:30:48Z [Term] id: OMP:0007216 name: altered rifamycin resistance def: "A rifamycin resistance phenotype where resistance to one or more rifamycin compounds is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007215 ! rifamycin resistance phenotype created_by: siegele creation_date: 2015-03-15T22:32:58Z [Term] id: OMP:0007217 name: not resistant to rifamycin def: "A rifamycin resistance phenotype where an organism or cell is sensitive to one or more rifamycins." [OMP:DAS] is_a: OMP:0007215 ! rifamycin resistance phenotype created_by: siegele creation_date: 2015-03-15T22:32:58Z [Term] id: OMP:0007218 name: resistant to rifamycin def: "A rifamycin resistance phenotype where an organism or cell is resistant to one or more rifamycins." [OMP:DAS] is_a: OMP:0007215 ! rifamycin resistance phenotype created_by: siegele creation_date: 2015-03-15T22:32:58Z [Term] id: OMP:0007219 name: decreased resistance to rifamycin def: "An altered rifamycin resistance phenotype where resistance to one or more rifamycins is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007216 ! altered rifamycin resistance created_by: siegele creation_date: 2015-03-15T22:37:30Z [Term] id: OMP:0007220 name: increased resistance to rifamycin def: "An altered rifamycin resistance phenotype where resistance to one or more rifamycins is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007216 ! altered rifamycin resistance created_by: siegele creation_date: 2015-03-15T22:39:31Z [Term] id: OMP:0007221 name: abolished resistance to rifamycin def: "A decreased resistance to rifamycin phenotype where resistance to one or more rifamycins is abolished." [OMP:DAS] is_a: OMP:0007217 ! not resistant to rifamycin is_a: OMP:0007219 ! decreased resistance to rifamycin created_by: siegele creation_date: 2015-03-15T22:40:32Z [Term] id: OMP:0007222 name: growth rate control of transcription def: "A transcription regulation phenotype where the level of a transcript(s) increases as the growth rate of the culture increases." [OMP:DAS, PMID:11844765] is_a: OMP:0007163 ! transcription regulation phenotype created_by: siegele creation_date: 2015-05-20T16:23:34Z [Term] id: OMP:0007223 name: decreased spore germination efficiency def: "A spore germination phenotype where the percentage of spores that germinate is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007292 ! altered spore germination efficiency created_by: dsiegele creation_date: 2015-06-01T16:03:03Z [Term] id: OMP:0007224 name: endospore location phenotype def: "An endospore morphology phenotype that describes the characteristic location of the mature spore in the mother cell (the sporangium)." [OMP:KDA] is_a: OMP:0007228 ! endospore morphology phenotype created_by: dsiegele creation_date: 2015-06-03T16:03:42Z [Term] id: OMP:0007225 name: central location of endospore def: "An endospore location phenotype where mature spores are located in the center of the mother cell (sporangium)." [ISBN:9780073402406, OMP:DAS] is_a: OMP:0007224 ! endospore location phenotype created_by: dsiegele creation_date: 2015-06-03T16:06:06Z [Term] id: OMP:0007226 name: terminal location of endospore def: "An endospore location phenotype where mature spores are located at one terminus of the mother cell (sporangium)." [OMP:DAS] is_a: OMP:0007224 ! endospore location phenotype created_by: dsiegele creation_date: 2015-06-04T15:40:39Z [Term] id: OMP:0007227 name: swollen sporangium def: "A xx." [ISBN:9780073402406, OMP:DAS] is_a: OMP:0007224 ! endospore location phenotype created_by: dsiegele creation_date: 2015-06-04T15:42:45Z [Term] id: OMP:0007228 name: endospore morphology phenotype def: "A spore morphology phenotype that is related to the form and structure of an endospore." [CL:0000563, GO:0034301, OMP:DAS] is_a: OMP:0008000 ! spore morphology phenotype created_by: dsiegele creation_date: 2015-06-04T16:05:37Z [Term] id: OMP:0007229 name: endospore external encapsulating structure phenotype def: "An endospore morphology phenotype that relates to the structures that lie outside the inner membrane of and surround the entire endospore." [GO:0043591, OMP:DAS] xref: GO:0043591 "endospore external encapsulating structure" is_a: OMP:0007228 ! endospore morphology phenotype created_by: dsiegele creation_date: 2015-06-04T16:17:34Z [Term] id: OMP:0007230 name: endospore exosporium phenotype def: "An endospore external encapsulating structure phenotype related to the exposporium, which when present is the outermost layer of a mature spore. The exosporium of bacterial endospores is typically loosely attached and located outside of the endospore coat. It is generally composed of protein, carbohydrate, and perhaps lipid." [GO:0043592, OMP:DAS] xref: GO:0043592 "exosporium" is_a: OMP:0007229 ! endospore external encapsulating structure phenotype created_by: dsiegele creation_date: 2015-06-04T16:22:54Z [Term] id: OMP:0007231 name: presence of an exosporium def: "An endospore exosporium phenotype where an exosporium is present as a component of the mature endospore." [OMP:DAS] is_a: OMP:0007230 ! endospore exosporium phenotype created_by: dsiegele creation_date: 2015-06-04T16:29:52Z [Term] id: OMP:0007232 name: absence of an exosporium def: "An exosporium phenotype where the mature endospore lacks an exosporium." [OMP:DAS] is_a: OMP:0007230 ! endospore exosporium phenotype created_by: dsiegele creation_date: 2015-06-04T16:29:52Z [Term] id: OMP:0007233 name: absence of binary fission def: "A binary fission phenotype where an organism lacks the ability to multiply by the process of binary fission." [OMP:JCH] is_a: OMP:0007067 ! binary fission phenotype created_by: siegele creation_date: 2015-06-20T18:21:53Z [Term] id: OMP:0007234 name: absence of budding def: "A budding phenotype where an organism lacks to the ability to multiply by the process of budding." [OMP:JCH] is_a: OMP:0000089 ! budding phenotype created_by: siegele creation_date: 2015-06-20T18:24:03Z [Term] id: OMP:0007235 name: absence of multiple fission def: "A multiple fission phenotype where an organism lacks the ability to multiply by the process of multiple fission." [OMP:JCH] is_a: OMP:0007068 ! multiple fission phenotype created_by: siegele creation_date: 2015-06-20T18:25:24Z [Term] id: OMP:0007236 name: absence of asexual sporulation def: "An asexual sporulation phenotype where an organism lacks the ability to multiple by the formation of mitotic spores." [OMP:JCH] is_a: OMP:0007142 ! asexual sporulation phenotype created_by: siegele creation_date: 2015-06-20T18:26:28Z [Term] id: OMP:0007237 name: bacteriophage sensitivity phenotype def: "A host-virus interaction phenotype related to whether a bacterium can be infected by and/or support growth of a bacteriophage." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000026 ! host-virus interaction phenotype created_by: siegele creation_date: 2015-06-29T17:35:29Z [Term] id: OMP:0007238 name: sensitive to bacteriophage def: "A bacteriophage sensitivity phenotype where a bacterium exhibits sensitivity to a bacteriophage." [OMP:DAS] is_a: OMP:0007237 ! bacteriophage sensitivity phenotype created_by: siegele creation_date: 2015-06-29T17:56:42Z [Term] id: OMP:0007239 name: not sensitive to bacteriophage def: "A bacteriophage sensitivity phenotype where a bacterium cannot be infected by and/or support reproduction of a bacteriophage." [OMP:DAS] synonym: "bacteriophage resistance" EXACT [] is_a: OMP:0007237 ! bacteriophage sensitivity phenotype created_by: siegele creation_date: 2015-06-29T18:02:50Z [Term] id: OMP:0007240 name: decreased bacteriophage absorption def: "An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because the cell or cells are defective for adsorption of the bacteriophage." [OMP:DAS] is_a: OMP:0007244 ! decreased sensitivity to bacteriophage created_by: siegele creation_date: 2015-06-29T18:05:20Z [Term] id: OMP:0007241 name: post-injection defect def: "An absence of bacteriophage sensitivity phenotype where a bacterium is resistant to a bacteriophage because it cannot support reproduction of the bacteriophage after absorption and injection." [OMP:DAS] is_a: OMP:0007244 ! decreased sensitivity to bacteriophage created_by: siegele creation_date: 2015-06-29T18:09:11Z [Term] id: OMP:0007242 name: altered host-virus interaction def: "A host-virus interaction phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000026 ! host-virus interaction phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: siegele creation_date: 2015-07-04T00:13:56Z [Term] id: OMP:0007243 name: altered bacteriophage sensitivity def: "A bacteriophage sensitivity phenotype where sensitivity of a bacterial cell or cells to a bacteriophage is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007237 ! bacteriophage sensitivity phenotype is_a: OMP:0007242 ! altered host-virus interaction created_by: siegele creation_date: 2015-07-04T00:16:40Z [Term] id: OMP:0007244 name: decreased sensitivity to bacteriophage def: "An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007243 ! altered bacteriophage sensitivity created_by: siegele creation_date: 2015-07-04T00:18:12Z [Term] id: OMP:0007245 name: abolished sensitivity to bacteriophage def: "A decreased bacteriophage sensitivity phenotype where the sensitivity of a bacterial cell or cells to a bacteriophage is abolished." [OMP:DAS] is_a: OMP:0007239 ! not sensitive to bacteriophage is_a: OMP:0007244 ! decreased sensitivity to bacteriophage created_by: siegele creation_date: 2015-07-04T00:20:54Z [Term] id: OMP:0007246 name: sensitive to a chemical def: "A chemical sensitivity phenotype where a cell, cells, or microbe are sensitive to a chemical." [OMP:DAS] is_a: OMP:0007195 ! chemical sensitivity phenotype created_by: siegele creation_date: 2015-07-16T00:36:34Z [Term] id: OMP:0007247 name: not sensitive to a chemical def: "A chemical sensitivity phenotype where a cell, cells, or microbe are not sensitive to a chemical." [OMP:DAS] is_a: OMP:0007195 ! chemical sensitivity phenotype created_by: siegele creation_date: 2015-07-16T00:36:34Z [Term] id: OMP:0007248 name: altered chemical sensitivity def: "A chemical sensitivity phenotype where sensitivity of a cell, cells, or microbe to a chemical is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007195 ! chemical sensitivity phenotype is_a: OMP:0007351 ! altered biological process created_by: siegele creation_date: 2015-07-16T00:36:34Z [Term] id: OMP:0007249 name: Increased sensitivity to a chemical def: "An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007248 ! altered chemical sensitivity created_by: siegele creation_date: 2015-07-16T00:42:17Z [Term] id: OMP:0007250 name: decreased sensitivity to a chemical def: "An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007248 ! altered chemical sensitivity created_by: siegele creation_date: 2015-07-16T00:42:17Z [Term] id: OMP:0007251 name: abolished chemical sensitivity def: "An altered chemical sensitivity phenotype where the sensitivity of a cell, cells, or microbe to a chemical is abolished." [OMP:DAS] is_a: OMP:0007247 ! not sensitive to a chemical is_a: OMP:0007250 ! decreased sensitivity to a chemical created_by: siegele creation_date: 2015-07-16T00:42:17Z [Term] id: OMP:0007252 name: colonization of a host phenotype def: "A microbe-host interaction phenotype that relates to the ability of a microbe to colonize a host organism." [OMP:DAS] is_a: OMP:0000197 ! microbe-host interaction phenotype created_by: siegele creation_date: 2015-07-31T13:22:28Z [Term] id: OMP:0007253 name: presence of colonization of a host def: "A colonization of a host phenotype where a microbe is able to colonize a host organism." [OMP:JG] is_a: OMP:0007252 ! colonization of a host phenotype created_by: siegele creation_date: 2015-07-31T13:25:08Z [Term] id: OMP:0007254 name: absence of colonization of a host def: "A colonization of a host phenotype where a microbe lacks the ability to colonize a host organism." [OMP:JG] is_a: OMP:0007252 ! colonization of a host phenotype created_by: siegele creation_date: 2015-07-31T13:25:08Z [Term] id: OMP:0007255 name: altered colonization of a host def: "A colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007252 ! colonization of a host phenotype is_a: OMP:0007403 ! altered microbe-host interaction created_by: siegele creation_date: 2015-07-31T13:25:08Z [Term] id: OMP:0007256 name: increased colonization of a host def: "An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007255 ! altered colonization of a host created_by: siegele creation_date: 2015-07-31T13:26:07Z [Term] id: OMP:0007257 name: decreased colonization of a host def: "An altered colonization of a host phenotype where the frequency, rate, timing, or extent of colonization is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007255 ! altered colonization of a host created_by: siegele creation_date: 2015-07-31T13:26:07Z [Term] id: OMP:0007258 name: abolished colonization of a host def: "A decreased colonization of a host phenotype where colonization of a host organism is abolished." [OMP:DAS] is_a: OMP:0007254 ! absence of colonization of a host is_a: OMP:0007257 ! decreased colonization of a host created_by: siegele creation_date: 2015-07-31T13:26:07Z [Term] id: OMP:0007259 name: cell viability phenotype def: "A microbial phenotype related to the ability of a microorganism, cell, or cells to survive and go on to grow and reproduce under the specified conditions." [FYPO:0000004, OMP:DAS] is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2015-07-31T13:47:33Z [Term] id: OMP:0007260 name: altered cell viability def: "A cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007259 ! cell viability phenotype intersection_of: OMP:0007259 ! cell viability phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2015-07-31T14:00:54Z [Term] id: OMP:0007261 name: decreased cell viability def: "An altered cell viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007260 ! altered cell viability created_by: siegele creation_date: 2015-07-31T14:00:54Z [Term] id: OMP:0007262 name: increased cell viability def: "An altered viability phenotype where under the specified conditions the viability of a microbe, cell, or cells is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007260 ! altered cell viability created_by: siegele creation_date: 2015-07-31T14:00:54Z [Term] id: OMP:0007263 name: viable but nonculturable cell is_a: OMP:0007260 ! altered cell viability created_by: siegele creation_date: 2015-07-31T14:00:54Z [Term] id: OMP:0007264 name: drug-dependent population growth phenotype def: "A population growth phenotype related to whether reproduction of an organism is dependent on the presence of a drug in the growth medium." [OMP:DAS] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2015-08-03T14:04:45Z [Term] id: OMP:0007265 name: presence of drug-dependent population growth def: "A drug-dependent population growth phenotype where reproduction of an organism is dependent on the presence of a drug in the growth medium." [OMP:DAS] is_a: OMP:0007264 ! drug-dependent population growth phenotype created_by: siegele creation_date: 2015-08-03T14:07:51Z [Term] id: OMP:0007266 name: absence of drug-dependent population growth def: "A drug-dependent population growth phenotype where reproduction of an organism is NOT dependent on the presence of a drug in the growth medium." [OMP:DAS] is_a: OMP:0007264 ! drug-dependent population growth phenotype created_by: siegele creation_date: 2015-08-03T14:07:51Z [Term] id: OMP:0007267 name: altered drug-dependence of population growth def: "A drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is altered relative to a designated control." [OMP:REF] is_a: OMP:0007157 ! altered population growth is_a: OMP:0007264 ! drug-dependent population growth phenotype created_by: siegele creation_date: 2015-08-03T14:07:51Z [Term] id: OMP:0007268 name: increased drug-dependence of population growth def: "An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007267 ! altered drug-dependence of population growth created_by: siegele creation_date: 2015-08-03T14:07:51Z [Term] id: OMP:0007269 name: decreased drug-dependence of population growth def: "An altered drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007267 ! altered drug-dependence of population growth created_by: siegele creation_date: 2015-08-03T14:07:51Z [Term] id: OMP:0007270 name: abolished drug-dependence of population growth def: "A decreased drug-dependent population growth phenotype where dependence of reproduction on the presence of a drug in the growth medium is abolished." [OMP:DAS] is_a: OMP:0007266 ! absence of drug-dependent population growth is_a: OMP:0007269 ! decreased drug-dependence of population growth created_by: siegele creation_date: 2015-08-03T14:07:51Z [Term] id: OMP:0007271 name: increased sensitivity to bacteriophage def: "An altered bacteriophage sensitivity phenotype where the sensitivity of a cell or cells to a bacteriophage is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007243 ! altered bacteriophage sensitivity created_by: siegele creation_date: 2015-08-11T16:54:13Z [Term] id: OMP:0007272 name: decreased absorption of bacteriocin def: "An increased resistance to bacteriocin phenotype that results from decreased binding of the bacteriocin to cells." [OMP:DAS] is_a: OMP:0006049 ! increased resistance to bacteriocin created_by: siegele creation_date: 2015-09-24T20:41:51Z [Term] id: OMP:0007273 name: bacteriocin tolerant def: "An increased resistance to bacteriocin phenotype where cells still bind the bacteriocin but are resistant to its effects." [OMP:DAS, PMID:4860908] synonym: "colicin tolerant" NARROW [] is_a: OMP:0006049 ! increased resistance to bacteriocin created_by: siegele creation_date: 2015-09-24T20:45:00Z [Term] id: OMP:0007274 name: mixotrophic phenotype def: "A metabolic phenotype where an organism can switch between using different sources of energy and/or carbon instead of having a single trophic mode. For example, an organism may switch between autotrophic and heterotrophic growth or between phototrophic and chemoorganotrophic growth." [OMP:DAS] is_a: OMP:0000224 ! energy metabolism phenotype is_a: OMP:0006023 ! carbon source utilization phenotype created_by: siegele creation_date: 2015-09-28T15:12:37Z [Term] id: OMP:0007275 name: altered frequency of reversing direction of flagellar rotation def: "An altered taxis phenotype where the frequency at which the direction of flagellar rotation reverses is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007127 ! altered taxis created_by: siegele creation_date: 2015-10-17T19:56:02Z [Term] id: OMP:0007276 name: increased threshold for positive chemotaxis def: "A decreased positive chemotaxis phenotype where the threshold concentration for responding to an attractant is increased relative to a designated control." [OMP:DAS] is_a: OMP:0000503 ! decreased chemotaxis created_by: siegele creation_date: 2015-11-07T13:32:21Z [Term] id: OMP:0007277 name: cell wall morphology phenotype def: "This term was made obsolete because it is a duplicate of OMP:0005233. A cell envelope morphology phenotype where the trait in question is the cell wall, a rigid or semi-rigid layer that surrounds the plasma membrane and maintains cell shape and helps protect against osmotic lysis." [GO:0005618, OMP:DAS] is_obsolete: true replaced_by: OMP:0005233 created_by: siegele creation_date: 2015-11-11T15:41:37Z [Term] id: OMP:0007278 name: disproportionation of thiosulfate def: "A chemolithotrophic phenotype where the biological disproportionation of thiosulfate occurs via an intramolecular redox change at each of the sulfur atoms and produces 1 mol of sulfate and 1 mol of sulfide." [OMP:DAS, PMID:10919837] comment: Disproportionation of thiosulfate is the reaction: thiosulfate + H2O --> SO42- + HS- + H+. is_a: OMP:0007110 ! chemolithotrophic created_by: siegele creation_date: 2015-11-12T00:46:14Z [Term] id: OMP:0007279 name: altered protein activity phenotype def: "A protein activity phenotype where the enzymatic or other activity of a protein is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype created_by: siegele creation_date: 2016-01-07T22:48:43Z [Term] id: OMP:0007280 name: presence of enzymatic activity def: "An enzymatic activity phenotype where a specified enzymatic activity is present in a cell, cells, or organism." [OMP:DAS] is_a: OMP:0000221 ! enzymatic activity phenotype created_by: siegele creation_date: 2016-01-09T18:04:12Z [Term] id: OMP:0007281 name: absence of enzymatic activity def: "An enzymatic activity phenotype where a specified enzymatic activity is absent in a cell, cells, or organism." [OMP:DAS] is_a: OMP:0000221 ! enzymatic activity phenotype created_by: siegele creation_date: 2016-01-09T18:05:38Z [Term] id: OMP:0007282 name: presence of UV-radiation resistance def: "A UV-radiation resistance phenotype where microbes in a population continue to grow and divide when exposed to UV radiation." [OMP:DAS] is_a: OMP:0005084 ! resistance to UV radiation phenotype created_by: siegele creation_date: 2016-01-09T18:37:25Z [Term] id: OMP:0007283 name: absence of UV radiation resistance def: "A UV-radiation resistance phenotype where microbes in a population stop growing (and may die) when exposed to UV radiation." [OMP:DAS] is_a: OMP:0005084 ! resistance to UV radiation phenotype created_by: siegele creation_date: 2016-01-09T18:39:51Z [Term] id: OMP:0007284 name: presence of virulence def: "A virulence phenotype where a microbe possesses the ability to cause disease in another organism (the host)." [OMP:DAS] is_a: OMP:0000068 ! virulence phenotype created_by: siegele creation_date: 2016-01-09T18:47:01Z [Term] id: OMP:0007285 name: laccase activity phenotype def: "A catalytic activity phenotype that relates to the presence or absence of laccase, a family of oxidoreductases that act on diphenols and related substances as donors and use oxygen as the acceptor." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nLaccase is involved in the synthesis of fungal melanin. synonym: "benzenediol:oxygen oxidoreductase activity" RELATED [EC:1.10.3.2] is_a: OMP:0000221 ! enzymatic activity phenotype is_a: OMP:0007130 ! differential test phenotype created_by: siegele creation_date: 2016-01-10T00:30:53Z [Term] id: OMP:0007286 name: presence of laccase activity def: "A laccase phenotype where an organism exhibits laccase activity." [OMP:DAS] is_a: OMP:0007285 ! laccase activity phenotype created_by: siegele creation_date: 2016-01-10T00:36:59Z [Term] id: OMP:0007287 name: absence of laccase activity def: "A laccase phenotype where an organism doesn't exhibit laccase activity." [OMP:DAS] is_a: OMP:0007285 ! laccase activity phenotype created_by: siegele creation_date: 2016-01-10T00:37:17Z [Term] id: OMP:0007288 name: altered laccase activity def: "A laccase activity phenotype where laccase activity is altered relative to a designated control." [OMP:DAS] is_a: OMP:0005130 ! altered enzymatic activity is_a: OMP:0007131 ! altered differential test result is_a: OMP:0007285 ! laccase activity phenotype created_by: siegele creation_date: 2016-01-10T00:37:57Z [Term] id: OMP:0007289 name: increased laccase activity def: "An altered laccase activity phenotype where laccase activity is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007288 ! altered laccase activity intersection_of: OMP:0007288 ! altered laccase activity intersection_of: has_quality PATO:0002304 ! increased process quality relationship: has_quality PATO:0002304 ! increased process quality created_by: siegele creation_date: 2016-01-10T00:45:01Z [Term] id: OMP:0007290 name: decreased laccase activity def: "An altered laccase activity phenotype where laccase activity is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007288 ! altered laccase activity intersection_of: OMP:0007288 ! altered laccase activity intersection_of: has_quality PATO:0002302 ! decreased process quality relationship: has_quality PATO:0002302 ! decreased process quality created_by: siegele creation_date: 2016-01-10T00:45:01Z [Term] id: OMP:0007291 name: abolished laccase activity def: "A decreased laccase activity phenotype where laccase activity is abolished." [OMP:DAS] is_a: OMP:0007287 ! absence of laccase activity is_a: OMP:0007290 ! decreased laccase activity created_by: siegele creation_date: 2016-01-10T00:45:01Z [Term] id: OMP:0007292 name: altered spore germination efficiency def: "A spore germination phenotype where the percentage of spores that germinate is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007353 ! altered spore germination intersection_of: OMP:0000095 ! spore germination phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2016-01-10T00:55:26Z [Term] id: OMP:0007293 name: increased spore germination efficiency def: "A spore germination phenotype where the percentage of spores that germinate is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007292 ! altered spore germination efficiency created_by: siegele creation_date: 2016-01-10T00:57:49Z [Term] id: OMP:0007294 name: diazonium blue B staining phenotype def: "A cell staining phenotype where microorganisms are classified based on their color after staining with diazonium blue B (DBB). DBB staining is used to differentiate ascomycetous and basidiomycetous yeasts." [doi:10.1099/00207713-31-2-204, OMP:DAS, PMID:60081] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "fast blue B staining phenotype" EXACT [CHEBI:87629] xref: APO:0000061 "colony color" is_a: OMP:0000214 ! cell staining phenotype created_by: siegele creation_date: 2016-01-29T22:48:37Z [Term] id: OMP:0007295 name: presence of diazonium blue B staining def: "A diazonium blue B staining phenotype where cells appear pink to red or violet after staining with diazonium blue B." [OMP:DAS] is_a: OMP:0007294 ! diazonium blue B staining phenotype created_by: siegele creation_date: 2016-01-29T23:13:37Z [Term] id: OMP:0007296 name: absence of diazonium blue B staining def: "A diazonium blue B staining phenotype where cells appear yellow or brown after staining with diazonium blue B." [OMP:DAS] is_a: OMP:0007294 ! diazonium blue B staining phenotype created_by: siegele creation_date: 2016-01-29T23:13:37Z [Term] id: OMP:0007297 name: altered diazonium blue B staining def: "A diazonium blue B (DBB) staining phenotype where the appearance of cells after staining with DBB is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007294 ! diazonium blue B staining phenotype is_a: OMP:0007304 ! altered cell staining phenotype created_by: siegele creation_date: 2016-01-29T23:13:37Z [Term] id: OMP:0007298 name: presence of acid-fast stain def: "An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol." [OMP:DAS] is_a: OMP:0000199 ! acid-fast staining phenotype created_by: siegele creation_date: 2016-01-29T23:18:08Z [Term] id: OMP:0007299 name: absence of acid-fast stain def: "An acid-fast stain phenotype where a cell or cells that have been stained, typically with carbolfuchsin, are not easily decolorized by acid--alcohol." [OMP:DAS] synonym: "non-acid-fast staining" EXACT [] is_a: OMP:0000199 ! acid-fast staining phenotype created_by: siegele creation_date: 2016-01-29T23:19:38Z [Term] id: OMP:0007300 name: altered acid-fast stain def: "An acid-fast stain phenotype where the resistance of a cell or cells to decolorization by an acid-alcohol mixture during staining is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000199 ! acid-fast staining phenotype is_a: OMP:0007304 ! altered cell staining phenotype created_by: siegele creation_date: 2016-01-29T23:29:27Z [Term] id: OMP:0007301 name: decreased diazonium blue B staining def: "An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007297 ! altered diazonium blue B staining created_by: siegele creation_date: 2016-01-30T00:33:19Z [Term] id: OMP:0007302 name: increased diazonium blue B staining def: "An altered diazonium blue B (DBB) staining phenotype where DBB staining of cells is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007297 ! altered diazonium blue B staining created_by: siegele creation_date: 2016-01-30T00:33:19Z [Term] id: OMP:0007303 name: abolished diazonium blue B staining def: "A decreased diazonium blue B (DBB) staining phenotype where DBB staining of cells is abolished." [OMP:DAS] is_a: OMP:0007296 ! absence of diazonium blue B staining is_a: OMP:0007301 ! decreased diazonium blue B staining created_by: siegele creation_date: 2016-01-30T13:32:56Z [Term] id: OMP:0007304 name: altered cell staining phenotype def: "A cell staining phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000214 ! cell staining phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: siegele creation_date: 2016-01-31T00:30:08Z [Term] id: OMP:0007305 name: altered utilization of inorganic nitrogen source def: "An inorganic nitrogen source utilization phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007013 ! inorganic nitrogen source utilization phenotype is_a: OMP:0007104 ! altered nutrient utilization created_by: siegele creation_date: 2016-01-31T00:41:26Z [Term] id: OMP:0007306 name: presence of inorganic nitrogen source utilization def: "An inorganic nitrogen source utilization phenotype where a cell or cells can use an inorganic compound as the source of nitrogen." [OMP:DAS] is_a: OMP:0007013 ! inorganic nitrogen source utilization phenotype created_by: siegele creation_date: 2016-01-31T00:43:21Z [Term] id: OMP:0007307 name: absence of inorganic nitrogen utilization def: "An inorganic nitrogen source utilization phenotype where a cell or cells lacks the ability to use inorganic compounds as the source of nitrogen." [OMP:DAS] is_a: OMP:0007013 ! inorganic nitrogen source utilization phenotype created_by: siegele creation_date: 2016-01-31T00:44:37Z [Term] id: OMP:0007308 name: cell death phenotype def: "A biological process phenotype that relates to the cessation of life of an individual cell." [APO:0000312, OMP:DAS] xref: APO:0000312 "cell death" is_a: OMP:0007332 ! cellular process phenotype created_by: dsiegele creation_date: 2016-02-02T14:15:49Z [Term] id: OMP:0007309 name: apoptosis phenotype def: "An energy-dependent, programmed form of cell death that is characterized by phenotypic markers such as increased levels of reactive oxygen species (often detected via DHE staining), externalization of phosphatidylserine (measured by annexin V staining), and DNA fragmentation (detected using the TUNEL assay). Other processes observed during apoptosis include chromosome condensation and breakdown of mitochondria, including loss of membrane potential and release of cytochrome c. Cells undergoing apoptosis do not lose plasma membrane integrity (measured by propidium iodide staining) until late in the process." [APO:0000155, OMP:DAS] xref: GO:0006915 "apoptotic process" is_a: OMP:0007308 ! cell death phenotype created_by: dsiegele creation_date: 2016-02-02T14:27:37Z [Term] id: OMP:0007310 name: absence of apoptosis def: "An apoptosis phenotype where a cell or cells cannot undergo apoptosis." [OMP:DAS] is_a: OMP:0007309 ! apoptosis phenotype created_by: dsiegele creation_date: 2016-02-02T14:31:24Z [Term] id: OMP:0007311 name: presence of apoptosis def: "An apoptosis phenotype where a cell or cells can undergo apoptosis." [OMP:DAS] is_a: OMP:0007309 ! apoptosis phenotype created_by: dsiegele creation_date: 2016-02-02T14:31:24Z [Term] id: OMP:0007312 name: altered apoptosis def: "An apoptosis phenotype where the occurrence of apoptosis is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007309 ! apoptosis phenotype is_a: OMP:0007341 ! altered cell death created_by: dsiegele creation_date: 2016-02-02T14:31:24Z [Term] id: OMP:0007313 name: decreased apoptosis def: "An altered apoptosis phenotype where the occurrence of apoptosis is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007312 ! altered apoptosis created_by: dsiegele creation_date: 2016-02-02T14:58:50Z [Term] id: OMP:0007314 name: increased apoptosis def: "An altered apoptosis phenotype where the occurrence of apoptosis is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007312 ! altered apoptosis created_by: dsiegele creation_date: 2016-02-02T14:58:50Z [Term] id: OMP:0007315 name: population morphology phenotype def: "A microbial phenotype related to the appearance of a microbial population, such as a colony, liquid culture, or biofilm." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0007194 ! biological process phenotype created_by: siegele creation_date: 2016-02-05T20:20:28Z [Term] id: OMP:0007316 name: abolished superoxide dismutase activity def: "A decreased superoxide dismutase activity phenotype where superoxide dismutase activity is abolished." [OMP:DAS] is_a: OMP:0005167 ! absence of superoxide dismutase activity is_a: OMP:0005169 ! decreased superoxide dismutase activity created_by: siegele creation_date: 2016-02-23T02:09:35Z [Term] id: OMP:0007317 name: abolished protein kinase A activity def: "A decreased protein kinase A activity phenotype where the activity is abolished." [OMP:DAS] is_a: OMP:0005155 ! absence of protein kinase A activity is_a: OMP:0005157 ! decreased protein kinase A activity created_by: siegele creation_date: 2016-02-23T02:13:30Z [Term] id: OMP:0007318 name: abolished ferric reductase activity def: "A decreased ferric reductase activity phenotype where ferric reductase activity is abolished." [OMP:DAS] is_a: OMP:0005149 ! absence of ferric reductase activity is_a: OMP:0005151 ! decreased ferric reductase activity created_by: siegele creation_date: 2016-02-23T02:16:03Z [Term] id: OMP:0007319 name: mucoid colony surface phenotype def: "A colony surface phenotype that is characterized by a surface with a viscous, slimy, or gummy appearance, typically due to the presence of extracellular polysaccharides produced by cells in the colony." [OMP:DAS] is_a: OMP:0000210 ! colony surface phenotype created_by: siegele creation_date: 2016-02-25T18:35:28Z [Term] id: OMP:0007320 name: absence of mucoid colonies def: "A mucoid colony phenotype where the organism forms nonmucoid colonies." [OMP:DAS] is_a: OMP:0007319 ! mucoid colony surface phenotype created_by: siegele creation_date: 2016-02-25T18:43:57Z [Term] id: OMP:0007321 name: altered mucoid colony phenotype def: "A mucoid colony phenotype where the mucoid or nonmucoid appearance of colonies is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007319 ! mucoid colony surface phenotype created_by: siegele creation_date: 2016-02-25T18:44:52Z [Term] id: OMP:0007322 name: increased mucoidy is_a: OMP:0007321 ! altered mucoid colony phenotype created_by: siegele creation_date: 2016-02-25T18:46:37Z [Term] id: OMP:0007323 name: decreased mucoidy def: "An altered mucoid colony pheotype where colonies are less mucoid than a designated control." [OMP:DAS] is_a: OMP:0007321 ! altered mucoid colony phenotype created_by: siegele creation_date: 2016-02-25T18:46:37Z [Term] id: OMP:0007324 name: abolished mucoidy def: "A decreased mucoidy phenotype where mucoid colonies are abolished." [OMP:DAS] is_a: OMP:0007320 ! absence of mucoid colonies is_a: OMP:0007323 ! decreased mucoidy created_by: siegele creation_date: 2016-02-25T18:46:37Z [Term] id: OMP:0007325 name: absence of inorganic sulfur utilization def: "A sulfur source utilization phenotype where an organism cannot use an inorganic S-containing chemical as the source of sulfur." [OMP:DAS] is_a: OMP:0007042 ! sulfur source utilization phenotype created_by: siegele creation_date: 2016-02-25T22:42:30Z [Term] id: OMP:0007326 name: absence of organic sulfur utilization def: "A sulfur source utilization phenotype where an organism cannot use an organic S-containing chemical as the source of sulfur." [OMP:DAS] is_a: OMP:0007042 ! sulfur source utilization phenotype created_by: siegele creation_date: 2016-02-25T22:42:30Z [Term] id: OMP:0007327 name: bud morphology phenotype def: "A cell morphology phenotype relating to the size, shape, or appearance of a bud, a protuberance from a cell of an organism that reproduces by budding." [GO:0005933, OMP:DAS] xref: APO:0000212 "bud morphology" xref: GO:0005933 "cellular bud" is_a: OMP:0000071 ! cell morphology phenotype created_by: siegele creation_date: 2016-05-21T22:43:21Z [Term] id: OMP:0007328 name: altered bud morphology def: "A bud morphology phenotype where the size, shape, or appearance of a bud is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007103 ! altered cell morphology is_a: OMP:0007327 ! bud morphology phenotype created_by: siegele creation_date: 2016-05-21T22:52:05Z [Term] id: OMP:0007329 name: bud neck morphology def: "A bud morphology phenotype relating to the size, shape, or appearance of the bud neck, which is the region where the bud joins the mother cell." [GO:0005935, OMP:DAS] xref: APO:0000056 "bud neck morphology" is_a: OMP:0007327 ! bud morphology phenotype created_by: siegele creation_date: 2016-05-21T22:59:29Z [Term] id: OMP:0007330 name: altered bud neck morphology def: "A bud neck morphology phenotype where the size, shape, or appearance of the bud neck is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007328 ! altered bud morphology is_a: OMP:0007329 ! bud neck morphology created_by: siegele creation_date: 2016-05-21T23:02:47Z [Term] id: OMP:0007331 name: abolished apoptosis def: "A decreased apoptosis phenotype where the ability of a cell or cells to undergo apoptosis is abolished." [OMP:DAS] is_a: OMP:0007313 ! decreased apoptosis created_by: siegele creation_date: 2016-05-26T23:29:02Z [Term] id: OMP:0007332 name: cellular process phenotype def: "A biological process phenotype that affects a cellular process, which is any biological process that is carried out at the cellular level, but not necessarily restricted to a single cell." [GO:0009987, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FYPO:0000114 "cellular process phenotype" is_a: OMP:0007194 ! biological process phenotype created_by: siegele creation_date: 2016-05-27T23:03:44Z [Term] id: OMP:0007333 name: autophagy phenotype def: "A cellular process phenotype related to the process of autophagy in which cells digest parts of their own cytoplasm." [GO:0006914, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "autolysosome formation" NARROW [] synonym: "autophagosome formation" NARROW [] is_a: OMP:0007332 ! cellular process phenotype created_by: siegele creation_date: 2016-05-27T23:08:08Z [Term] id: OMP:0007334 name: autophagic vesicle formation phenotype def: "An autophagy phenotype related to the formation of autophagic vesicles." [OMP:DAS] is_a: OMP:0007333 ! autophagy phenotype created_by: siegele creation_date: 2016-05-27T23:09:01Z [Term] id: OMP:0007335 name: altered autophagic vesicle formation def: "An autophagic vesicle formation phenotype that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007334 ! autophagic vesicle formation phenotype is_a: OMP:0007343 ! altered autophagy created_by: siegele creation_date: 2016-05-27T23:09:26Z [Term] id: OMP:0007336 name: increased autophagic vesicle formation def: "An altered autophagic vesicle formation phenotype where autophagic vesicle formation is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007335 ! altered autophagic vesicle formation created_by: siegele creation_date: 2016-05-27T23:10:53Z [Term] id: OMP:0007337 name: decreased autophagic vesicle formation def: "An altered autophagic vesicle formation phenotype where autophagic vesicle formation is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007335 ! altered autophagic vesicle formation created_by: siegele creation_date: 2016-05-27T23:10:53Z [Term] id: OMP:0007338 name: abolished autophagic vesicle formation def: "A decreased autophagic vesicle formation phenotype where autophagic vesicle formation is abolished." [OMP:DAS] is_a: OMP:0007337 ! decreased autophagic vesicle formation created_by: siegele creation_date: 2016-05-27T23:10:53Z [Term] id: OMP:0007339 name: nuclear morphology phenotype def: "A cell morphology phenotype related to the size, shape, or appearance of the nucleus." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: APO:0000057 "nuclear morphology" is_a: OMP:0000071 ! cell morphology phenotype created_by: siegele creation_date: 2016-05-28T02:18:45Z [Term] id: OMP:0007340 name: altered nuclear morphology def: "A nuclear morphology phenotype where the size, shape, or appearance of the nucleus is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007103 ! altered cell morphology is_a: OMP:0007339 ! nuclear morphology phenotype created_by: siegele creation_date: 2016-05-28T02:21:05Z [Term] id: OMP:0007341 name: altered cell death def: "A cell death phenotype where death of a cell or cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007308 ! cell death phenotype is_a: OMP:0007342 ! altered cellular process created_by: siegele creation_date: 2016-05-28T02:24:07Z [Term] id: OMP:0007342 name: altered cellular process def: "A cellular process phenotype where a cellular process is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007332 ! cellular process phenotype is_a: OMP:0007351 ! altered biological process created_by: siegele creation_date: 2016-05-28T02:25:03Z [Term] id: OMP:0007343 name: altered autophagy def: "An autophagy phenotype where autophagy in a cell or cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007333 ! autophagy phenotype is_a: OMP:0007342 ! altered cellular process created_by: siegele creation_date: 2016-05-28T02:28:04Z [Term] id: OMP:0007344 name: nuclear position phenotype def: "A cell morphology phenotype related to the location of a nucleus or nucleus within a cell or between separating cells." [APO:0000118, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. is_a: OMP:0000071 ! cell morphology phenotype created_by: siegele creation_date: 2016-05-28T02:34:23Z [Term] id: OMP:0007345 name: altered nuclear position def: "A nuclear position phenotype where the location of the nucleus or nuclei within a cell or between separating cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007103 ! altered cell morphology is_a: OMP:0007344 ! nuclear position phenotype intersection_of: OMP:0007344 ! nuclear position phenotype intersection_of: has_quality OMP:0007189 ! altered_relative_to relationship: has_quality OMP:0007189 ! altered_relative_to created_by: siegele creation_date: 2016-05-28T02:36:59Z [Term] id: OMP:0007346 name: protein secretion phenotype def: "A biological process phenotype related to the process of protein secretion, which is the controlled release of proteins from a cell." [GO:0009306, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "exocytosis" NARROW [] synonym: "protein secretion" NARROW [APO:0000078] is_a: OMP:0007194 ! biological process phenotype created_by: siegele creation_date: 2016-06-08T17:02:00Z [Term] id: OMP:0007347 name: altered protein secretion def: "A protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007346 ! protein secretion phenotype created_by: siegele creation_date: 2016-06-09T22:42:13Z [Term] id: OMP:0007348 name: increased protein secretion def: "An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is increased relative to a designated control." [OMP:DAS] xref: FYPO:0000539 "increased protein secretion" is_a: OMP:0007347 ! altered protein secretion created_by: siegele creation_date: 2016-06-09T22:43:50Z [Term] id: OMP:0007349 name: decreased protein secretion def: "An altered protein secretion phenotype where the frequency, rate, timing or extent of the process of protein secretion is decreased relative to a designated control." [OMP:DAS] xref: FYPO:0000538 "decreased protein secretion" is_a: OMP:0007347 ! altered protein secretion created_by: siegele creation_date: 2016-06-09T22:47:42Z [Term] id: OMP:0007350 name: abolished protein secretion def: "A decreased protein secretion phenotype where the process of protein secretion is abolished." [OMP:DAS] xref: FYPO:0000537 "abolished protein secretion" is_a: OMP:0007349 ! decreased protein secretion created_by: siegele creation_date: 2016-06-09T22:48:16Z [Term] id: OMP:0007351 name: altered biological process def: "A biological process phenotype where the rate, frequency, timing, or extent of a biological process is altered relative to a designated control." [OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007194 ! biological process phenotype created_by: siegele creation_date: 2016-06-09T22:50:27Z [Term] id: OMP:0007352 name: altered cell development def: "A cell development phenotype where development of a cell or cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000070 ! cell development phenotype is_a: OMP:0007342 ! altered cellular process created_by: siegele creation_date: 2016-06-09T22:58:20Z [Term] id: OMP:0007353 name: altered spore germination def: "A spore germination phenotype where germination of a spore or spores is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000095 ! spore germination phenotype created_by: siegele creation_date: 2016-06-09T23:07:17Z [Term] id: OMP:0007354 name: altered amino acid requirement def: "An altered growth factor requirement phenotype where the requirement for an amino acid in the growth medium is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007079 ! altered growth factor requirement created_by: dsiegele creation_date: 2016-06-16T15:56:40Z [Term] id: OMP:0007355 name: abolished amino acid requirement def: "A decreased amino acid requirement phenotype where an organism's requirement for an amino acid in the growth medium is abolished." [OMP:DAS] is_a: OMP:0007021 ! decreased amino acid requirement created_by: dsiegele creation_date: 2016-06-16T16:20:47Z [Term] id: OMP:0007356 name: quinone resistance phenotype def: "An antimicrobial resistance phenotype related to resistance or sensitivity to a quinone. Quinones are compounds having a fully conjugated cyclic dione structure, such as that of benzoquinones, This class includes some polycyclic and heterocyclic compounds." [CHEBI:36141, OMP:DAS] synonym: "streptonigrin" NARROW [CHEBI:9287] xref: CHEBI:36141 "quinone" is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2016-06-17T01:16:57Z [Term] id: OMP:0007357 name: altered cellular component phenotype def: "A cellular component phenotype where a quality of a cellular component is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007197 ! cellular component phenotype created_by: dsiegele creation_date: 2016-06-20T16:01:53Z [Term] id: OMP:0007358 name: nucleoside resistance phenotype def: "An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that is a nucleoside: an N-glycosyl compound that has both a nucleobase, normally adenine, guanine, xanthine, thymine, cytosine or uracil, and either a ribose or deoxyribose as functional parents." [CHEBI:33838, OMP:DAS] synonym: "azidothymidine resistance phenotype" NARROW [CHEBI:10110] synonym: "puromycin resistance phenotype" NARROW [CHEBI:17939] synonym: "tunicamycin resistance phenotype" NARROW [CHEBI:29699] synonym: "zidovudine resistance phenotype" NARROW [CHEBI:10110] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: dsiegele creation_date: 2016-06-20T16:23:54Z [Term] id: OMP:0007359 name: resistant to a nucleoside def: "A nucleoside resistance phenotype where an organism, cell, or cells is resistant to a nucleoside." [OMP:DAS] is_a: OMP:0007358 ! nucleoside resistance phenotype created_by: dsiegele creation_date: 2016-06-20T16:27:19Z [Term] id: OMP:0007360 name: not resistant to a nucleoside def: "A nucleoside resistance phenotype where an organism, cell, or cells is not resistant to a nucleoside." [OMP:DAS] is_a: OMP:0007358 ! nucleoside resistance phenotype created_by: dsiegele creation_date: 2016-06-20T16:27:19Z [Term] id: OMP:0007361 name: altered resistance to a nucleoside def: "A nucleoside resistance phenotype where resistance of an organism, cell, or cells to a nucleoside is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007358 ! nucleoside resistance phenotype created_by: dsiegele creation_date: 2016-06-20T16:27:19Z [Term] id: OMP:0007362 name: Increased resistance to a nucleoside def: "An altered resistance to a nucleoside phenotype where resistance to a nucleoside is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007361 ! altered resistance to a nucleoside created_by: dsiegele creation_date: 2016-06-20T16:40:21Z [Term] id: OMP:0007363 name: decreased resistance to a nucleoside def: "An altered resistance to a nucleoside phenotype where resistance to a nucleoside is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007361 ! altered resistance to a nucleoside created_by: dsiegele creation_date: 2016-06-20T16:40:21Z [Term] id: OMP:0007364 name: abolished resistance to a nucleoside def: "An decreased resistance to a nucleoside phenotype where resistance to a nucleoside is abolished." [OMP:DAS] is_a: OMP:0007360 ! not resistant to a nucleoside is_a: OMP:0007363 ! decreased resistance to a nucleoside created_by: dsiegele creation_date: 2016-06-20T16:40:21Z [Term] id: OMP:0007365 name: acridine resistance phenotype def: "An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a compound that includes an acridine moiety: a polycyclic heteroarene that is anthracene in which one of the central CH groups is replaced by a nitrogen atom." [CHEBI:36420, OMP:DAS] synonym: "acridine orange" NARROW [CHEBI:51739] synonym: "acriflavine" NARROW [CHEBI:74728] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2016-06-21T01:11:35Z [Term] id: OMP:0007366 name: resistant to an acridine def: "An acridine resistance phenotype where an organism, cell, or cells is resistant to an acridine." [OMP:DAS] is_a: OMP:0007365 ! acridine resistance phenotype created_by: siegele creation_date: 2016-06-21T01:17:16Z [Term] id: OMP:0007367 name: not resistant to an acridine def: "An acridine resistance phenotype where an organism, cell, or cells is not resistant to an acridine." [OMP:DAS] is_a: OMP:0007365 ! acridine resistance phenotype created_by: siegele creation_date: 2016-06-21T01:17:16Z [Term] id: OMP:0007368 name: altered resistance to an acridine def: "An acridine resistance phenotype where resistance of an organism, cell, or cells to an acridine is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007365 ! acridine resistance phenotype created_by: siegele creation_date: 2016-06-21T01:17:16Z [Term] id: OMP:0007369 name: increased resistance to an acridine def: "An altered resistance to an acridine phenotype where resistance is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007368 ! altered resistance to an acridine created_by: siegele creation_date: 2016-06-21T01:17:16Z [Term] id: OMP:0007370 name: decreased resistance to an acridine def: "An altered resistance to an acridine phenotype where resistance is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007368 ! altered resistance to an acridine created_by: siegele creation_date: 2016-06-21T01:17:16Z [Term] id: OMP:0007371 name: abolished resistance to an acridine def: "A decreased resistance to an acridine phenotype where resistance abolished." [OMP:DAS] is_a: OMP:0007367 ! not resistant to an acridine is_a: OMP:0007370 ! decreased resistance to an acridine created_by: siegele creation_date: 2016-06-21T01:17:16Z [Term] id: OMP:0007372 name: alkylating agent resistance phenotype def: "An antimicrobial agent resistance phenotype relating to resistance or sensitivity to an alkylating agent: a highly reactive chemical that introduces alkyl radicals into biologically active molecules and thereby prevents their proper functioning." [CHEBI:22333, OMP:DAS] synonym: "Benzalkonium" NARROW [CHEBI:3020] synonym: "Cisplatin" NARROW [CHEBI:27899] synonym: "Hydroxyurea" NARROW [CHEBI:44423] synonym: "methyl methanesulfonate" NARROW [CHEBI:25255] synonym: "MMS" RELATED [CHEBI:25255] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: dsiegele creation_date: 2016-06-22T16:41:33Z [Term] id: OMP:0007373 name: resistant to alkylating agent def: "An alkylating agent resistance phenotype where an organism, cell, or cells is resistant to an alkylating agent." [OMP:DAS] is_a: OMP:0007372 ! alkylating agent resistance phenotype created_by: dsiegele creation_date: 2016-06-23T15:27:23Z [Term] id: OMP:0007374 name: not resistant to alkylating agent def: "An alkylating agent resistance phenotype where an organism, cell, or cells is not resistant to an alkylating agent." [OMP:DAS] is_a: OMP:0007372 ! alkylating agent resistance phenotype created_by: dsiegele creation_date: 2016-06-23T15:27:23Z [Term] id: OMP:0007375 name: altered resistance to alkylating agent def: "An alkylating agent resistance phenotype where resistance of an organism, cell, or cells to an alkylating agent is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007372 ! alkylating agent resistance phenotype created_by: dsiegele creation_date: 2016-06-23T15:27:23Z [Term] id: OMP:0007376 name: increased resistance to alkylating agent def: "An altered alkylating agent resistance phenotype where resistance of an organism, cell, or cells to an alkylating agent is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007375 ! altered resistance to alkylating agent created_by: dsiegele creation_date: 2016-06-23T15:27:23Z [Term] id: OMP:0007377 name: decreased resistance to alkylating agent def: "An altered alkylating agent resistance phenotype where resistance of an organism, cell, or cells to an alkylating agent is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007375 ! altered resistance to alkylating agent created_by: dsiegele creation_date: 2016-06-23T15:27:23Z [Term] id: OMP:0007378 name: abolished resistance to alkylating agent def: "A decreased resistance to alkylating agent where resistance of an organism, cell, or cells to an alkylating agent is abolished." [OMP:DAS] is_a: OMP:0007374 ! not resistant to alkylating agent is_a: OMP:0007377 ! decreased resistance to alkylating agent created_by: dsiegele creation_date: 2016-06-23T15:27:23Z [Term] id: OMP:0007379 name: pyrimidine requirement def: "A requires growth factor(s) phenotype where the required growth factor is a pyrimidine base." [OMP:DAS] synonym: "uracil requirement" NARROW [CHEBI:17568] is_a: OMP:0007069 ! requires growth factor(s) created_by: dsiegele creation_date: 2016-06-23T15:57:42Z [Term] id: OMP:0007380 name: benzamides resistance phenotype def: "An antimicrobial agent resistance phenotype relating to resistance or sensitivity to a benzamide. Benzamides are compounds based on benzamide, which consists of benzene bearing a single carboxamido substituent." [CHEBI:22702, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "benzamide resistance phenotype" RELATED [CHEBI:28179] synonym: "CHIR-090 resistance phenotype" NARROW [CID:\:11546620] synonym: "sulfamonomethoxine resistance phenotype" NARROW [CHBEI:32164] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007381 name: resistant to benzamides def: "A benzamides resistance phenotype where an organism, cell, or cells is resistant to a benzamide." [OMP:DAS] is_a: OMP:0007380 ! benzamides resistance phenotype created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007382 name: not resistant to benzamides def: "A benzamides resistance phenotype where an organism, cell, or cells is not resistant to a benzamide." [OMP:DAS] is_a: OMP:0007380 ! benzamides resistance phenotype created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007383 name: altered resistance to benzamides def: "A benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007380 ! benzamides resistance phenotype created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007384 name: increased resistance to a benzamide def: "An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007383 ! altered resistance to benzamides created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007385 name: decreased resistance benzamides def: "An altered benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007383 ! altered resistance to benzamides created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007386 name: abolished resistance to benzamides def: "A decreased resistance to benzamides resistance phenotype where the resistance of an organism, cell, or cells to a benzamide is abolished." [OMP:DAS] is_a: OMP:0007385 ! decreased resistance benzamides created_by: siegele creation_date: 2016-06-26T14:45:16Z [Term] id: OMP:0007387 name: altered pyrimidine requirement def: "An altered growth factor requirement phenotype where the requirement for a pyrimidine base as a growth factor is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007079 ! altered growth factor requirement created_by: dsiegele creation_date: 2016-06-29T15:45:39Z [Term] id: OMP:0007388 name: increased pyrimidine requirement def: "An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007074 ! increased growth factor requirement is_a: OMP:0007387 ! altered pyrimidine requirement created_by: dsiegele creation_date: 2016-06-29T15:47:23Z [Term] id: OMP:0007389 name: decreased pyrimidine requirement def: "An altered pyrimidine requirement phenotype where an organism's requirement for a purine base is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007075 ! decreased growth factor requirement is_a: OMP:0007387 ! altered pyrimidine requirement created_by: dsiegele creation_date: 2016-06-29T15:47:23Z [Term] id: OMP:0007390 name: abolished pyrimidine requirement def: "A decreased pyrimidine requirement phenotype where the requirement for a pyrimidine base as a growth factor is abolished." [OMP:DAS] is_a: OMP:0007389 ! decreased pyrimidine requirement created_by: dsiegele creation_date: 2016-06-29T15:47:23Z [Term] id: OMP:0007391 name: abolished cell viability def: "A decreased viability phenotype where the viability of a microbe, cell, or cells is abolished under the specified conditions." [OMP:DAS] synonym: "inviable" RELATED [APO:0000112] is_a: OMP:0007261 ! decreased cell viability created_by: siegele creation_date: 2016-06-29T19:15:29Z [Term] id: OMP:0007392 name: viable cell def: "A cell viability phenotype where a cell, cells, or organism is viable under the specified conditions." [OMP:DAS] xref: FYPO:0000124 "viable cell" is_a: OMP:0007259 ! cell viability phenotype created_by: siegele creation_date: 2016-07-01T22:15:10Z [Term] id: OMP:0007393 name: nonviable cell def: "A cell viability phenotype where a cell, cells, or organism is nonviable under the specified conditions." [OMP:DAS] synonym: "inviable" RELATED [APO:0000112] xref: FYPO:0000049 "inviable cell" is_a: OMP:0007259 ! cell viability phenotype created_by: siegele creation_date: 2016-07-01T22:15:10Z [Term] id: OMP:0007394 name: lethality phenotype def: "A microbe-host interaction phenotype related to the ability of a microbe to infect and cause death of a host." [OMP:DAS] is_a: OMP:0000197 ! microbe-host interaction phenotype created_by: siegele creation_date: 2016-07-06T13:10:19Z [Term] id: OMP:0007395 name: presence of lethality def: "A lethality phenotype where infection by a microbe can cause death of the host." [OMP:DAS] is_a: OMP:0007394 ! lethality phenotype created_by: siegele creation_date: 2016-07-06T13:12:26Z [Term] id: OMP:0007396 name: absence of lethality def: "A lethality phenotype where infection by a microbe does not cause death of the host." [OMP:DAS] is_a: OMP:0007394 ! lethality phenotype created_by: siegele creation_date: 2016-07-06T13:12:26Z [Term] id: OMP:0007397 name: altered lethality def: "A lethality phenotype where the ability of an infectious microbe to cause death of the host is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007394 ! lethality phenotype is_a: OMP:0007403 ! altered microbe-host interaction created_by: siegele creation_date: 2016-07-06T13:12:26Z [Term] id: OMP:0007398 name: decreased lethality def: "An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007397 ! altered lethality created_by: siegele creation_date: 2016-07-06T13:12:26Z [Term] id: OMP:0007399 name: abolished lethality def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of the host is abolished." [OMP:DAS] is_a: OMP:0007396 ! absence of lethality is_a: OMP:0007398 ! decreased lethality created_by: siegele creation_date: 2016-07-06T13:12:26Z [Term] id: OMP:0007400 name: increased lethality def: "An altered lethality phenotype where the ability of an infectious microbe to cause death of the host is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007397 ! altered lethality created_by: siegele creation_date: 2016-07-06T13:12:26Z [Term] id: OMP:0007401 name: ascospore formation phenotype def: "A sexual sporulation phenotype related to the formation of an ascospore, a dormant, highly resistant, sexual spore with a thick wall that forms within the mother cell. Ascospores are generally found in clusters of four or eight spores within a single mother cell, the ascus, and are characteristic of the ascomycete fungi (phylum Ascomycota)." [GO:0030437, OMP:DAS] is_a: OMP:0007405 ! sexual sporulation phenotype created_by: siegele creation_date: 2016-07-06T14:29:13Z [Term] id: OMP:0007402 name: presence of ascospore formation def: "An ascospore formation phenotype where a microbe has the ability to form ascospores." [OMP:DAS] xref: APO:0000041 "sporulation" xref: FYPO:0000590 "normal sporulation" is_a: OMP:0007401 ! ascospore formation phenotype created_by: siegele creation_date: 2016-07-06T14:32:46Z [Term] id: OMP:0007403 name: altered microbe-host interaction def: "A microbe-host interaction phenotype where the frequency, rate, timing, or extent of interaction is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000197 ! microbe-host interaction phenotype is_a: OMP:0007085 ! altered microbial phenotype created_by: siegele creation_date: 2016-07-09T13:22:30Z [Term] id: OMP:0007404 name: abolished resistance to killing by host def: "A decreased resistance to killing by host phenotype where resistance of a microbe to killing by a host is abolished." [OMP:DAS] is_a: OMP:0005140 ! absence of resistance to killing by host is_a: OMP:0005143 ! decreased resistance to killing by host created_by: siegele creation_date: 2016-07-09T13:24:32Z [Term] id: OMP:0007405 name: sexual sporulation phenotype def: "A sporulation phenotype related to the formation of spores derived from the products of meiosis." [GO:0034293, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0034293 "sexual sporulation" is_a: OMP:0000091 ! sporulation phenotype is_a: OMP:0007406 ! sexual reproduction phenotype created_by: siegele creation_date: 2016-07-09T14:14:51Z [Term] id: OMP:0007406 name: sexual reproduction phenotype def: "A microbial phenotype related to sexual reproduction: the biological process that creates a new organism by combining the genetic material of two organisms. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two different individuals (parents) join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny." [GO:0019953, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: GO:0019953 is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2016-07-09T14:24:56Z [Term] id: OMP:0007407 name: absence of ascospore formation def: "An ascospore formation phenotype where a microbe lacks the ability to form ascospores." [OMP:DAS] is_a: OMP:0007401 ! ascospore formation phenotype created_by: siegele creation_date: 2016-07-09T14:47:12Z [Term] id: OMP:0007408 name: altered ascospore formation def: "An ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is altered relative to a designated control." [OMP:DAS] synonym: "abnormal sporulation" RELATED [FYPO:0000121] is_a: OMP:0007401 ! ascospore formation phenotype is_a: OMP:0007435 ! altered sexual sporulation created_by: siegele creation_date: 2016-07-09T14:51:28Z [Term] id: OMP:0007409 name: akinete morphology phenotype def: "A spore morphology phenotype relating to the form and structure of an akinete, which is a thick-walled (encysted) dormant cell derived from the enlargement of a vegetative cell. Akinetes typically have granular cytoplasm, are more resistant to environmental extremes than vegetative cells, and are characteristic of several groups of Cyanobacteria." [doi:10.1046/j.1469-8137.1999.00505.x, OMP:DAS, PMID:11948167] comment: Akinetes are typically more resistant to dessication and other environmental stresses than vegetative cells. is_a: OMP:0008000 ! spore morphology phenotype created_by: siegele creation_date: 2016-07-13T18:36:45Z [Term] id: OMP:0007410 name: altered akinete morphology def: "An akinete morphology phenotype where the morphology of the akinetes produced by an organism is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007409 ! akinete morphology phenotype is_a: OMP:0007411 ! altered spore morphology created_by: siegele creation_date: 2016-07-13T18:43:01Z [Term] id: OMP:0007411 name: altered spore morphology def: "A spore morphology phenotype where the morphology of spores produced by a microbe is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007103 ! altered cell morphology is_a: OMP:0008000 ! spore morphology phenotype created_by: siegele creation_date: 2016-07-13T18:45:02Z [Term] id: OMP:0007412 name: mating phenotype def: "A sexual reproduction phenotype that affects conjugation with cellular fusion, which is the union of cellular and genetic information from compatible mating types." [GO:0000747, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nAn example of conjugation with cellular fusion is found in Saccharomyces cerevisiae. synonym: "mating response" EXACT [APO:0000032] xref: FYPO:0000301 "mating phenotype" is_a: OMP:0007406 ! sexual reproduction phenotype created_by: dsiegele creation_date: 2016-07-14T16:21:02Z [Term] id: OMP:0007413 name: conjugation phenotype def: "A multi-organism process phenotype relating to the union or introduction of genetic information from compatible cell types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms." [GO:0000746, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested.\n\nAn example of conjugation would be the transfer of a conjugative plasmid from a donor bacterium to a recipient bacterium. xref: GO:0000746 "conjugation" is_a: OMP:0005116 ! multi-organism process phenotype created_by: dsiegele creation_date: 2016-07-14T16:25:26Z [Term] id: OMP:0007414 name: absence of conjugation def: "A conjugation phenotype where mating does not occur through the process of conjugation." [OMP:DAS] is_a: OMP:0007413 ! conjugation phenotype created_by: dsiegele creation_date: 2016-07-14T16:32:10Z [Term] id: OMP:0007415 name: presence of conjugation def: "A conjugation phenotype where mating occurs through the process of conjugation." [OMP:DAS] is_a: OMP:0007413 ! conjugation phenotype created_by: dsiegele creation_date: 2016-07-14T16:32:10Z [Term] id: OMP:0007416 name: altered conjugation def: "A conjugation phenotype where the frequency, rate, timing, or extent of conjugation is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007413 ! conjugation phenotype created_by: dsiegele creation_date: 2016-07-14T16:32:10Z [Term] id: OMP:0007417 name: decreased conjugation def: "An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007416 ! altered conjugation created_by: dsiegele creation_date: 2016-07-14T16:36:35Z [Term] id: OMP:0007418 name: increased conjugation def: "An altered conjugation phenotype where the frequency, rate, timing, or extent of conjugation is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007416 ! altered conjugation created_by: dsiegele creation_date: 2016-07-14T16:36:35Z [Term] id: OMP:0007419 name: abolished conjugation def: "A decreased conjugation phenotype where conjugation is abolished." [OMP:DAS] is_a: OMP:0007417 ! decreased conjugation created_by: dsiegele creation_date: 2016-07-14T16:36:35Z [Term] id: OMP:0007420 name: increased akinete formation def: "An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007196 ! altered akinete formation created_by: siegele creation_date: 2016-07-16T16:44:37Z [Term] id: OMP:0007421 name: decreased akinete formation def: "An altered akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007196 ! altered akinete formation created_by: siegele creation_date: 2016-07-16T16:44:37Z [Term] id: OMP:0007422 name: abolished akinete formation def: "A decreased akinete formation phenotype where the rate, frequency, timing, or extent of akinete formation is abolished." [OMP:DAS] is_a: OMP:0000007 ! absence of akinete formation is_a: OMP:0007421 ! decreased akinete formation created_by: siegele creation_date: 2016-07-16T16:44:37Z [Term] id: OMP:0007423 name: decreased budding frequency def: "A decreased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is decreased relative to a designated control." [APO:0000089, OMP:DAS] synonym: "budding index" RELATED [] is_a: OMP:0006006 ! decreased budding created_by: siegele creation_date: 2016-07-16T16:56:11Z [Term] id: OMP:0007424 name: increased budding frequency def: "An increased budding phenotype where the fraction of budded cells (budding index) in a proliferating cell population is increased relative to a designated control." [APO:0000089, OMP:DAS] synonym: "budding index" RELATED [] is_a: OMP:0006004 ! increased budding created_by: siegele creation_date: 2016-07-16T16:58:06Z [Term] id: OMP:0007425 name: absence of schizogeny def: "A schizogeny phenotype where an organism does not reproduce by the process of schizogeny." [OMP:DAS] is_a: OMP:0007140 ! schizogeny phenotype is_a: OMP:0007235 ! absence of multiple fission created_by: siegele creation_date: 2016-07-16T17:12:16Z [Term] id: OMP:0007426 name: increased schizogeny def: "An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007146 ! altered schizogeny created_by: siegele creation_date: 2016-07-16T17:14:28Z [Term] id: OMP:0007427 name: decreased schizogeny def: "An altered schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007146 ! altered schizogeny created_by: siegele creation_date: 2016-07-16T17:14:28Z [Term] id: OMP:0007428 name: abolished schizogeny def: "A decreased schizogeny phenotype where the rate, frequency, timing, or extent of schizogeny is abolished." [OMP:DAS] is_a: OMP:0007425 ! absence of schizogeny is_a: OMP:0007427 ! decreased schizogeny created_by: siegele creation_date: 2016-07-16T17:14:28Z [Term] id: OMP:0007429 name: increased asexual spore formation def: "An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007145 ! altered asexual sporulation created_by: siegele creation_date: 2016-07-19T15:37:25Z [Term] id: OMP:0007430 name: decreased asexual spore formation def: "An altered asexual sporulation phenotype where the rate, frequency, timing, or extent of the process of forming asexual (mitotic) spores is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007145 ! altered asexual sporulation created_by: siegele creation_date: 2016-07-19T15:37:25Z [Term] id: OMP:0007431 name: abolished asexual spore formation def: "A decreased asexual spore formation phenotype where the process of forming asexual (mitotic) spores is abolished." [OMP:DAS] is_a: OMP:0007430 ! decreased asexual spore formation created_by: siegele creation_date: 2016-07-19T15:37:25Z [Term] id: OMP:0007432 name: altered number of flagella def: "An altered flagellum phenotype where the number of flagella per cell or cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007105 ! altered flagellum created_by: siegele creation_date: 2016-07-20T15:45:00Z [Term] id: OMP:0007433 name: presence of sexual sporulation def: "A sexual sporulation phenotype where an organism is able to produce sexual spores." [OMP:DAS] is_a: OMP:0007405 ! sexual sporulation phenotype is_a: OMP:0007439 ! presence of sexual reproduction created_by: siegele creation_date: 2016-07-27T19:29:30Z [Term] id: OMP:0007434 name: absence of sexual sporulation def: "A sexual sporulation phenotype where an organism is not able to produce sexual spores." [OMP:DAS] is_a: OMP:0007405 ! sexual sporulation phenotype is_a: OMP:0007440 ! absence of sexual reproduction created_by: siegele creation_date: 2016-07-27T19:29:30Z [Term] id: OMP:0007435 name: altered sexual sporulation def: "A sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007405 ! sexual sporulation phenotype is_a: OMP:0007441 ! altered sexual reproduction created_by: siegele creation_date: 2016-07-27T19:29:30Z [Term] id: OMP:0007436 name: increased sexual sporulation def: "An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007435 ! altered sexual sporulation created_by: siegele creation_date: 2016-07-27T19:29:30Z [Term] id: OMP:0007437 name: decreased sexual sporulation def: "An altered sexual sporulation phenotype where the frequency, rate, timing, or extent of the process of forming sexual spores is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007435 ! altered sexual sporulation created_by: siegele creation_date: 2016-07-27T19:29:30Z [Term] id: OMP:0007438 name: abolished sexual sporulation def: "A decreased sexual sporulation phenotype where the formation of sexual spores is abolished." [OMP:DAS] is_a: OMP:0007434 ! absence of sexual sporulation is_a: OMP:0007437 ! decreased sexual sporulation created_by: siegele creation_date: 2016-07-27T19:29:30Z [Term] id: OMP:0007439 name: presence of sexual reproduction def: "A sexual reproduction phenotype where an organism is able to reproduce sexually." [OMP:DAS] is_a: OMP:0007406 ! sexual reproduction phenotype created_by: siegele creation_date: 2016-07-27T19:32:00Z [Term] id: OMP:0007440 name: absence of sexual reproduction def: "A sexual reproduction phenotype where an organism is not able to reproduce sexually." [OMP:DAS] is_a: OMP:0007406 ! sexual reproduction phenotype created_by: siegele creation_date: 2016-07-27T19:32:00Z [Term] id: OMP:0007441 name: altered sexual reproduction def: "A sexual reproduction phenotype where the frequency, rate, timing, or extent of sexual reproduction is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007406 ! sexual reproduction phenotype created_by: siegele creation_date: 2016-07-27T19:32:00Z [Term] id: OMP:0007442 name: presence of lethality in mice def: "A presence of lethality phenotype where infection by a microbe can cause death of a mouse (or mice) (Mus musculus)." [OMP:DAS] is_a: OMP:0007395 ! presence of lethality created_by: siegele creation_date: 2016-07-27T22:27:42Z [Term] id: OMP:0007443 name: presence of lethality in immunocompromised mice def: "A presence of lethality phenotype where infection by a microbe can cause death of an immunocompromised mouse (or mice) (Mus musculus)." [OMP:DAS] is_a: OMP:0007395 ! presence of lethality created_by: siegele creation_date: 2016-07-27T22:27:43Z [Term] id: OMP:0007444 name: absence of lethality in mice def: "An absence of lethality phenotype where the host of the infection is a mouse (or mice) (Mus musculus)." [OMP:DAS] is_a: OMP:0007396 ! absence of lethality created_by: siegele creation_date: 2016-07-27T22:28:22Z [Term] id: OMP:0007445 name: absence of lethality in immunocompromised mice def: "An absence of lethality phenotype where the host of the infection is an immunocompromised mouse (or mice) (Mus musculus)." [OMP:DAS] is_a: OMP:0007396 ! absence of lethality created_by: siegele creation_date: 2016-07-27T22:28:22Z [Term] id: OMP:0007446 name: decreased lethality in mice def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007398 ! decreased lethality created_by: siegele creation_date: 2016-07-27T22:29:04Z [Term] id: OMP:0007447 name: decreased lethality in immunocompromised mice def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised mouse host is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007398 ! decreased lethality created_by: siegele creation_date: 2016-07-27T22:31:31Z [Term] id: OMP:0007448 name: abolished lethality in mice def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is abolished." [OMP:DAS] is_a: OMP:0007399 ! abolished lethality is_a: OMP:0007446 ! decreased lethality in mice created_by: siegele creation_date: 2016-07-27T22:33:19Z [Term] id: OMP:0007449 name: abolished lethality in immunocompromised mice def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of its immunocompromised murine host is abolished." [OMP:DAS] is_a: OMP:0007399 ! abolished lethality is_a: OMP:0007447 ! decreased lethality in immunocompromised mice created_by: siegele creation_date: 2016-07-27T22:33:19Z [Term] id: OMP:0007450 name: increased lethality in mice def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of its murine host is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007400 ! increased lethality created_by: siegele creation_date: 2016-07-27T22:40:08Z [Term] id: OMP:0007451 name: increased lethality in immunocompromised mice def: "A decreased lethality phenotype where the ability of an infectious microbe to cause death of an immunocompromised murine host is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007400 ! increased lethality created_by: siegele creation_date: 2016-07-27T22:40:08Z [Term] id: OMP:0007452 name: presence of survival in macrophages def: "A presence of resistance to killing by host that describes the ability of a microbe to survive ingestion by host macrophages." [OMP:DAS] is_a: OMP:0005139 ! presence of resistance to killing by host created_by: dsiegele creation_date: 2016-08-08T14:58:53Z [Term] id: OMP:0007453 name: absence of survival in macrophages is_a: OMP:0005140 ! absence of resistance to killing by host created_by: dsiegele creation_date: 2016-08-08T15:15:44Z [Term] id: OMP:0007454 name: altered survival in macrophages is_a: OMP:0005141 ! altered resistance to killing by host created_by: dsiegele creation_date: 2016-08-08T15:16:09Z [Term] id: OMP:0007455 name: survival in macrophages phenotype is_a: OMP:0000197 ! microbe-host interaction phenotype created_by: dsiegele creation_date: 2016-08-08T15:17:42Z [Term] id: OMP:0007456 name: population viability phenotype def: "A population phenotype relating to the proportion of a population that is viable under the specified conditions. Viability refers to the ability of a microbe to survive, grow, and reproduce." [FYPO:0002057, OMP:DAS] is_a: OMP:0007006 ! population phenotype created_by: dsiegele creation_date: 2016-08-10T14:51:48Z [Term] id: OMP:0007457 name: viable cell population def: "A cell population viability phenotype where all, or almost all, of the cells are viable under the specified conditions." [OMP:DAS] xref: FYPO:0002058 "viable cell population" is_a: OMP:0007705 ! cell population viability phenotype created_by: dsiegele creation_date: 2016-08-10T14:56:12Z [Term] id: OMP:0007458 name: nonviable cell population def: "A cell population viability phenotype where all, or almost all, of the cells are nonviable under the specified conditions." [FYPO:0002059, OMP:DAS] synonym: "inviable cell population" EXACT [] xref: FYPO:0002059 "inviable cell population" is_a: OMP:0007456 ! population viability phenotype created_by: dsiegele creation_date: 2016-08-10T14:56:12Z [Term] id: OMP:0007459 name: altered cell population viability def: "A cell population viability phenotype where the proportion of cells that are viable under the specified conditions is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007705 ! cell population viability phenotype created_by: dsiegele creation_date: 2016-08-10T14:56:12Z [Term] id: OMP:0007460 name: viable vegetative cell population def: "A cell population phenotype in which cells in the population are viable in the vegetative growth phase of the life cycle." [FYPO:0002060, OMP:DAS] xref: FYPO:0002060 "viable vegetative cell population" is_a: OMP:0007457 ! viable cell population created_by: dsiegele creation_date: 2016-08-10T15:00:12Z [Term] id: OMP:0007461 name: nonviable vegetative cell population def: "A nonviable cell population phenotype where the cells in the population are in the vegetative growth phase of the life cycle." [FYPO:0002061, OMP:DAS] synonym: "inviable vegetative cell population" RELATED [] xref: FYPO:0002061 "inviable vegetative cell population" is_a: OMP:0007458 ! nonviable cell population created_by: dsiegele creation_date: 2016-08-10T15:16:25Z [Term] id: OMP:0007462 name: colonization of invertebrate host phenotype def: "A microbe-host interaction phenotype relating to the ability of a microbe to colonize an invertebrate host." [OMP:DAS] synonym: "colonization of silkworm (Bombyx mori)" NARROW [TaxonomyID:7091] is_a: OMP:0007252 ! colonization of a host phenotype created_by: siegele creation_date: 2016-09-04T21:42:45Z [Term] id: OMP:0007463 name: presence of flocculation def: "A flocculation phenotype where cells or organisms in liquid culture aggregate to form clumps of many cells." [OMP:DAS] xref: APO:0000065 "flocculation" is_a: OMP:0000178 ! flocculation phenotype created_by: dsiegele creation_date: 2016-09-12T14:35:40Z [Term] id: OMP:0007464 name: absence of flocculation def: "A flocculation phenotype where cells or organisms in liquid culture do not aggregate to form clumps of many cells." [OMP:DAS] is_a: OMP:0000178 ! flocculation phenotype created_by: dsiegele creation_date: 2016-09-12T14:35:40Z [Term] id: OMP:0007465 name: altered flocculation def: "A flocculation phenotype where the frequency, rate, timing, or extent of flocculation is altered relative to a designated control." [OMP:JG] is_a: OMP:0000178 ! flocculation phenotype is_a: OMP:0007469 ! altered liquid culture morphology created_by: dsiegele creation_date: 2016-09-12T14:35:40Z [Term] id: OMP:0007466 name: increased flocculation def: "An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is increased relative to a designated control." [OMP:JG] is_a: OMP:0007465 ! altered flocculation created_by: dsiegele creation_date: 2016-09-12T14:35:40Z [Term] id: OMP:0007467 name: decreased flocculation def: "An altered flocculation phenotype where the frequency, rate, timing, or extent of flocculation is decreased relative to a designated control." [OMP:JG] is_a: OMP:0007465 ! altered flocculation created_by: dsiegele creation_date: 2016-09-12T14:35:40Z [Term] id: OMP:0007468 name: abolished flocculation def: "A decreased flocculation phenotype where flocculation is abolished." [OMP:JG] is_a: OMP:0007464 ! absence of flocculation is_a: OMP:0007467 ! decreased flocculation created_by: dsiegele creation_date: 2016-09-12T14:35:40Z [Term] id: OMP:0007469 name: altered liquid culture morphology def: "A liquid culture morphology phenotype where the visible appearance of a liquid culture is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000177 ! liquid culture morphology phenotype is_a: OMP:0007470 ! altered population morphology created_by: dsiegele creation_date: 2016-09-12T15:14:45Z [Term] id: OMP:0007470 name: altered population morphology def: "A population morphology phenotype where the visible appearance of a microbial population is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007315 ! population morphology phenotype is_a: OMP:0007351 ! altered biological process created_by: dsiegele creation_date: 2016-09-12T15:16:19Z [Term] id: OMP:0007471 name: increased ascospore formation def: "An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007408 ! altered ascospore formation is_a: OMP:0007436 ! increased sexual sporulation created_by: dsiegele creation_date: 2016-09-13T14:35:10Z [Term] id: OMP:0007472 name: decreased ascospore formation def: "An altered ascospore formation phenotype where the frequency, rate, timing, or extent of formation of ascospores is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007408 ! altered ascospore formation is_a: OMP:0007437 ! decreased sexual sporulation created_by: dsiegele creation_date: 2016-09-13T14:35:10Z [Term] id: OMP:0007473 name: abolished ascospore formation def: "An altered ascospore formation phenotype where the formation of ascospores is abolished." [OMP:DAS] xref: FYPO:0000583 "abolished sporulation" is_a: OMP:0007407 ! absence of ascospore formation is_a: OMP:0007472 ! decreased ascospore formation created_by: dsiegele creation_date: 2016-09-13T14:35:10Z [Term] id: OMP:0007474 name: phenols resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to phenols, which are organic aromatic compounds having one or more hydroxy groups attached to a benzene or other arene ring." [CHEBI:33853, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "Epigallocatechin gallate (EGCG)" NARROW [] synonym: "phenol red resistance phenotype" NARROW [CHEBI:31991] synonym: "phenol resistance phenotype" NARROW [CHEBI:15882] synonym: "rose bengal resistance phenotype" NARROW [CHEBI:52261] synonym: "triclosan resistance phenotype" NARROW [CHEBI:164200] synonym: "triton X-100 resistance phenotype" NARROW [] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: dsiegele creation_date: 2016-09-19T16:00:17Z [Term] id: OMP:0007475 name: resistant to phenols def: "A phenols resistance phenotype where an organism, cell, or cells is resistant to phenols." [OMP:JG] is_a: OMP:0007474 ! phenols resistance phenotype created_by: dsiegele creation_date: 2016-09-19T16:49:20Z [Term] id: OMP:0007476 name: not resistant to phenols def: "A phenols resistance phenotype where an organism or cell is sensitive to phenols." [OMP:JG] is_a: OMP:0007474 ! phenols resistance phenotype created_by: dsiegele creation_date: 2016-09-19T16:49:20Z [Term] id: OMP:0007477 name: altered resistance to phenols def: "A phenol resistance phenotype where the frequency, rate, timing, or extent of resistance to phenols is altered relative to a designated control." [OMP:JG] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007474 ! phenols resistance phenotype created_by: dsiegele creation_date: 2016-09-19T16:49:20Z [Term] id: OMP:0007478 name: increased resistance to phenols def: "An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is increased relative to a designated control." [OMP:JG] is_a: OMP:0007477 ! altered resistance to phenols created_by: dsiegele creation_date: 2016-09-19T16:49:20Z [Term] id: OMP:0007479 name: decreased resistance to phenols def: "An altered resistance to phenols phenotype where the frequency, rate, timing, or extent of resistance to phenols is decreased relative to a designated control." [OMP:JG] is_a: OMP:0007477 ! altered resistance to phenols created_by: dsiegele creation_date: 2016-09-19T16:49:20Z [Term] id: OMP:0007480 name: abolished resistance to phenols def: "A decreased resistance to phenols phenotype where resistance to phenols is abolished." [OMP:JG] is_a: OMP:0007476 ! not resistant to phenols is_a: OMP:0007479 ! decreased resistance to phenols created_by: dsiegele creation_date: 2016-09-19T16:49:20Z [Term] id: OMP:0007481 name: quaternary ammonium salts resistance phenotype def: "An antimicrobial agent resistance phenotype relating to the resistance or sensitivity of a microbe to a quaternary ammonium salt. These are derivatives of ammonium compounds, (NH4+)Y-, in which all four of the hydrogens bonded to nitrogen have been replaced with univalent (usually organyl) groups." [CHEBI:35273, OMP:DAS] synonym: "benzalkonium chloride resistance phenotype" NARROW [CHEBI:3020] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007482 name: resistant to quaternary ammonium salts def: "A quaternary ammonium salts resistance phenotype where an organism or cell is resistant to one or more quaternary ammonium salts." [OMP:JG] is_a: OMP:0007481 ! quaternary ammonium salts resistance phenotype created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007483 name: not resistant to quaternary ammonium salts def: "A quaternary ammonium salts resistance phenotype where an organism or cell is sensitive to one or more quaternary ammonium salts." [OMP:JG] is_a: OMP:0007481 ! quaternary ammonium salts resistance phenotype created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007484 name: altered resistance to quaternary ammonium salts def: "A quaternary ammonium salts resistance phenotype where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is altered relative to a designated control." [OMP:JG] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007481 ! quaternary ammonium salts resistance phenotype created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007485 name: increased resistance to quaternary ammonium salts def: "An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is increased relative to a designated control." [OMP:JG] is_a: OMP:0007484 ! altered resistance to quaternary ammonium salts created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007486 name: decreased resistance to quaternary ammonium salts def: "An altered resistance to quaternary ammonium salts where the frequency, rate, timing, or extent of resistance to quaternary ammonium salts is decreased relative to a designated control." [OMP:JG] is_a: OMP:0007484 ! altered resistance to quaternary ammonium salts created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007487 name: abolished resistance to quaternary ammonium salts def: "A decreased resistance to quaternary ammonium salts where resistance to quaternary ammonium salts is abolished." [OMP:JG] is_a: OMP:0007483 ! not resistant to quaternary ammonium salts is_a: OMP:0007486 ! decreased resistance to quaternary ammonium salts created_by: dsiegele creation_date: 2016-09-19T17:10:16Z [Term] id: OMP:0007488 name: absence of motility by gliding def: "An absence of motility phenotype where a microbe is not capable of gliding motility." [OMP:DAS] is_a: OMP:0000133 ! absence of motility created_by: siegele creation_date: 2016-09-24T23:00:10Z [Term] id: OMP:0007489 name: absence of motility by swarming def: "An absence of motility phenotype where a microbe is not capable of swarming motility." [OMP:DAS] is_a: OMP:0000133 ! absence of motility created_by: siegele creation_date: 2016-09-24T23:00:10Z [Term] id: OMP:0007490 name: absence of motility by swimming def: "An absence of motility phenotype where a microbe is not capable of swimming motility." [OMP:DAS] is_a: OMP:0000133 ! absence of motility created_by: siegele creation_date: 2016-09-24T23:00:10Z [Term] id: OMP:0007491 name: absence of motility by twitching def: "An absence of motility phenotype where a microbe is not capable of twitching motility." [OMP:DAS] is_a: OMP:0000133 ! absence of motility created_by: siegele creation_date: 2016-09-24T23:00:10Z [Term] id: OMP:0007492 name: altered motility by gliding def: "A motility by gliding phenotype where the frequency, rate, timing, or extent of gliding is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007001 ! altered motility created_by: siegele creation_date: 2016-09-24T23:01:37Z [Term] id: OMP:0007493 name: altered cell motility by twitching def: "A cell motility by twitching phenotype where the frequency, rate, timing, or extent of twitching is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007001 ! altered motility created_by: siegele creation_date: 2016-09-24T23:01:37Z [Term] id: OMP:0007494 name: abolished motility by twitching def: "A decreased motility by twitching phenotype where the ability of a microbe to move by twitching motility is abolished." [OMP:DAS] is_a: OMP:0007000 ! abolished motility is_a: OMP:0007094 ! decreased motility by twitching is_a: OMP:0007491 ! absence of motility by twitching created_by: siegele creation_date: 2016-09-24T23:04:50Z [Term] id: OMP:0007495 name: epoxide resistance phenotype def: "An antimicrobial resistance phenotype relating to resistance or sensitivity to an epoxide. An epoxide is any cyclic ether in which the oxygen atom forms part of a 3-membered ring." [CHEBI:32955, OMP:DAS] synonym: "cerulenin resistance phenotype" NARROW [CHEBI:171741] synonym: "fosfomycin resistance phenotype" NARROW [CHEBI:28915] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2016-09-25T12:02:01Z [Term] id: OMP:0007496 name: resistant to an epoxide def: "An epoxide resistance phenotype where an organism, cell, or cells is resistant to an epoxide." [OMP:JG] is_a: OMP:0007495 ! epoxide resistance phenotype created_by: siegele creation_date: 2016-09-25T12:11:27Z [Term] id: OMP:0007497 name: not resistant to an epoxide def: "An epoxide resistance phenotype where an organism or cell is sensitive to an epoxide." [OMP:JG] is_a: OMP:0007495 ! epoxide resistance phenotype created_by: siegele creation_date: 2016-09-25T12:11:27Z [Term] id: OMP:0007498 name: altered epoxide resistance def: "An epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is altered relative to a designated control." [OMP:JG] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007495 ! epoxide resistance phenotype created_by: siegele creation_date: 2016-09-25T12:11:27Z [Term] id: OMP:0007499 name: increased resistance to an epoxide def: "An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to epoxide is increased relative to a designated control." [OMP:JG] is_a: OMP:0007498 ! altered epoxide resistance created_by: siegele creation_date: 2016-09-25T12:12:32Z [Term] id: OMP:0007500 name: decreased resistance to an epoxide def: "An altered epoxide resistance phenotype where the frequency, rate, timing, or extent of resistance to an epoxide is decreased relative to a designated control." [OMP:JG] is_a: OMP:0007498 ! altered epoxide resistance created_by: siegele creation_date: 2016-09-25T12:12:32Z [Term] id: OMP:0007501 name: abolished resistance to an epoxide def: "A decreased resistance to an epoxide phenotype where resistance to an epoxide is abolished." [OMP:JG] is_a: OMP:0007497 ! not resistant to an epoxide is_a: OMP:0007500 ! decreased resistance to an epoxide created_by: siegele creation_date: 2016-09-25T12:12:32Z [Term] id: OMP:0007502 name: altered capsule morphology def: "A capsule morphology phenotype where the size, shape, or appearance of the capsule is altered relative to a designated control." [OMP:DAS] is_a: OMP:0000203 ! capsule phenotype created_by: siegele creation_date: 2016-09-25T13:45:05Z [Term] id: OMP:0007503 name: altered capsule size def: "An altered capsule morphology phenotype where the size of the capsule is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007502 ! altered capsule morphology created_by: siegele creation_date: 2016-09-25T13:47:16Z [Term] id: OMP:0007504 name: Increased capsule size def: "An altered capsule size phenotype where the size of the capsule is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007503 ! altered capsule size created_by: siegele creation_date: 2016-09-25T13:49:19Z [Term] id: OMP:0007505 name: decreased capsule size def: "An altered capsule size phenotype where the size of the capsule is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007503 ! altered capsule size created_by: siegele creation_date: 2016-09-25T13:49:19Z [Term] id: OMP:0007506 name: titan cell morphology phenotype def: "A cell morphology phenotype relating to the form and structure of titan cells, which are large vegetative cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses." [FAO:0000063, OMP:DAS, PMID:21821718] xref: FAO:0000063 "titan cell" is_a: OMP:0000071 ! cell morphology phenotype created_by: siegele creation_date: 2016-09-25T22:33:27Z [Term] id: OMP:0007507 name: presence of titan cells def: "A titan cell phenotype where a microbe is able to form titan cells." [OMP:DAS] is_a: OMP:0007506 ! titan cell morphology phenotype created_by: siegele creation_date: 2016-09-25T23:28:19Z [Term] id: OMP:0007508 name: absence of titan cells def: "A titan cell phenotype where a microbe cannot form titan cells." [OMP:DAS] is_a: OMP:0007506 ! titan cell morphology phenotype created_by: siegele creation_date: 2016-09-25T23:28:19Z [Term] id: OMP:0007509 name: altered titan cell morphology def: "A titan cell phenotype where the size, shape, or appearance of titan cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007103 ! altered cell morphology is_a: OMP:0007506 ! titan cell morphology phenotype created_by: siegele creation_date: 2016-09-25T23:28:19Z [Term] id: OMP:0007510 name: altered titan cell formation def: "A titan cell formation phenotype where the frequency, rate, timing, or extent of titan cell formation is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007554 ! titan cell formation phenotype created_by: siegele creation_date: 2016-09-25T23:32:51Z [Term] id: OMP:0007511 name: ascospore morphology phenotype def: "A spore morphology phenotype that is related to the form and structure of an ascospore, which is a thick-walled spore that stores and protects one or more nuclei following sexual reproduction in an Ascomycete." [CL:0000607, FAO:0000020, OMP:DAS] is_a: OMP:0008000 ! spore morphology phenotype created_by: siegele creation_date: 2016-12-19T14:07:15Z [Term] id: OMP:0007512 name: altered ascospore morphology def: "An ascospore morphology phenotype in which the form and structure of an ascospore is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007411 ! altered spore morphology is_a: OMP:0007511 ! ascospore morphology phenotype created_by: siegele creation_date: 2016-12-19T14:12:30Z [Term] id: OMP:0007513 name: altered endospore morphology def: "An endospore morphology phenotype where the form and structure of an endospore is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007228 ! endospore morphology phenotype is_a: OMP:0007411 ! altered spore morphology created_by: siegele creation_date: 2016-12-19T14:16:33Z [Term] id: OMP:0007514 name: decreased negative osmotaxis def: "A decreased osmotaxis phenotype where negative osmotaxis by a motile microbe is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0005372 ! decreased osmotaxis created_by: dsiegele creation_date: 2017-02-20T15:38:16Z [Term] id: OMP:0007515 name: decreased positive osmotaxis def: "A decreased osmotaxis phenotype where positive osmotaxis by a motile microbe is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0005372 ! decreased osmotaxis created_by: dsiegele creation_date: 2017-02-20T15:38:16Z [Term] id: OMP:0007516 name: growth under high osmolarity phenotype def: "A growth range phenotype relating to the ability of a microbe to grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth." [OMP:DAS] is_a: OMP:0005013 ! solute and water activity growth range phenotype created_by: dsiegele creation_date: 2017-02-20T15:58:54Z [Term] id: OMP:0007517 name: presence of growth under high osmolarity def: "A growth under high osmolarity phenotype where a microbe can grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth." [OMP:DAS] is_a: OMP:0007516 ! growth under high osmolarity phenotype created_by: dsiegele creation_date: 2017-02-20T15:59:09Z [Term] id: OMP:0007518 name: absence of growth under high osmolarity def: "A growth under high osmolarity phenotype where a microbe cannot grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth." [OMP:DAS] is_a: OMP:0007516 ! growth under high osmolarity phenotype created_by: dsiegele creation_date: 2017-02-20T15:59:09Z [Term] id: OMP:0007519 name: altered growth under high osmolarity def: "A growth under high osmolarity phenotype where the ability of a microbe to grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007516 ! growth under high osmolarity phenotype is_a: OMP:0007523 ! altered growth range created_by: dsiegele creation_date: 2017-02-20T15:59:09Z [Term] id: OMP:0007520 name: increased growth under high osmolarity def: "An altered growth under high osmolarity phenotype where the ability of a microbe to grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007519 ! altered growth under high osmolarity created_by: dsiegele creation_date: 2017-02-20T16:03:09Z [Term] id: OMP:0007521 name: decreased growth under high osmolarity def: "An altered growth under high osmolarity phenotype where the ability of a microbe to grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007519 ! altered growth under high osmolarity created_by: dsiegele creation_date: 2017-02-20T16:03:09Z [Term] id: OMP:0007522 name: abolished growth under high osmolarity def: "A decreased growth under high osmolarity phenotype where the ability of a microbe to grow and proliferate when the osmolarity of the medium is higher than the osmolarity that allows optimal growth is abolished." [OMP:DAS] is_a: OMP:0007518 ! absence of growth under high osmolarity is_a: OMP:0007521 ! decreased growth under high osmolarity created_by: dsiegele creation_date: 2017-02-20T16:03:16Z [Term] id: OMP:0007523 name: altered growth range def: "A growth range phenotype where the ability of a microbe to grow and proliferate under a specified growth condition is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007192 ! growth range phenotype created_by: dsiegele creation_date: 2017-02-20T16:06:25Z [Term] id: OMP:0007524 name: presence of lethality in an invertebrate host def: "A presence of lethality phenotype where infection by a microbe can cause death of an invertebrate host." [OMP:DAS] is_a: OMP:0007395 ! presence of lethality created_by: dsiegele creation_date: 2017-02-20T16:43:30Z [Term] id: OMP:0007525 name: absence of lethality in an invertebrate host def: "An absence of lethality phenotype where the infected host is an invertebrate." [OMP:DAS] is_a: OMP:0007396 ! absence of lethality created_by: dsiegele creation_date: 2017-02-20T16:46:31Z [Term] id: OMP:0007526 name: altered lethality in an invertebrate host def: "An altered lethality phenotype where the ability of an infectious microbe to cause death of an invertebrate host is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007397 ! altered lethality created_by: dsiegele creation_date: 2017-02-20T16:48:08Z [Term] id: OMP:0007527 name: altered lethality in an amoeba host def: "An altered lethality phenotype where the ability of an infectious microbe to cause death of an amoeba host is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007397 ! altered lethality created_by: dsiegele creation_date: 2017-02-20T16:49:04Z [Term] id: OMP:0007528 name: presence of lethality in an amoeba host def: "A presence of lethality phenotype where infection by a microbe can cause death of an amoeba host." [OMP:DAS] is_a: OMP:0007395 ! presence of lethality created_by: dsiegele creation_date: 2017-02-20T16:54:13Z [Term] id: OMP:0007529 name: absence of lethality in an amoeba host def: "An absence of lethality phenotype where infection by a microbe doesn't cause death of an amoeba host." [OMP:DAS] is_a: OMP:0007396 ! absence of lethality created_by: dsiegele creation_date: 2017-02-20T16:55:05Z [Term] id: OMP:0007530 name: decreased lethality in an amoeba host def: "An altered lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007527 ! altered lethality in an amoeba host created_by: dsiegele creation_date: 2017-02-20T16:57:15Z [Term] id: OMP:0007531 name: increased lethality in an amoeba host def: "An altered lethality in an amoeba phenotype where the ability of an infectious microbe to cause death of an amoeba host is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007527 ! altered lethality in an amoeba host created_by: dsiegele creation_date: 2017-02-20T16:57:15Z [Term] id: OMP:0007532 name: abolished lethality in an amoeba host def: "A decreased lethality in an amoeba host phenotype where the ability of an infectious microbe to cause death of an amoeba host is abolished." [OMP:DAS] is_a: OMP:0007529 ! absence of lethality in an amoeba host is_a: OMP:0007530 ! decreased lethality in an amoeba host created_by: dsiegele creation_date: 2017-02-20T16:59:35Z [Term] id: OMP:0007533 name: urea derivative resistance phenotype def: "An antimicrobial agent resistance phenotype relating to resistance or sensitivity to compounds that are structural derivatives of urea." [CHEBI:47857, OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "hydroxyurea resistance phenotype" NARROW [CHEBI:44423] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2017-02-24T13:14:38Z [Term] id: OMP:0007534 name: resistant to a urea derivative def: "A ureas resistance phenotype where a microbe is resistant to a derivative of urea." [CHEBI:47857, OMP:DAS] is_a: OMP:0007533 ! urea derivative resistance phenotype created_by: siegele creation_date: 2017-02-24T13:18:35Z [Term] id: OMP:0007535 name: not resistant to a urea derivative def: "A ureas resistance phenotype where a microbe is not resistant to a derivative of urea." [CHEBI:47857, OMP:DAS] synonym: "sensitive to a urea derivative" EXACT [] synonym: "sensitive to hydroxyurea" NARROW [] is_a: OMP:0007533 ! urea derivative resistance phenotype created_by: siegele creation_date: 2017-02-24T13:18:35Z [Term] id: OMP:0007536 name: altered resistance to a urea derivative def: "A urea derivative resistance phenotype where resistance or sensitivity to a urea derivative is altered relative to a designated control." [CHEBI:47857, OMP:DAS] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007533 ! urea derivative resistance phenotype created_by: siegele creation_date: 2017-02-24T13:18:35Z [Term] id: OMP:0007537 name: increased resistance to a urea derivative def: "An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is increased relative to a designated control." [OMP:DAS] synonym: "decreased sensitivity to a urea derivative" EXACT [] synonym: "decreased sensitivity to hydroxyurea" NARROW [CHEBI:44423] is_a: OMP:0007536 ! altered resistance to a urea derivative created_by: siegele creation_date: 2017-02-24T13:19:13Z [Term] id: OMP:0007538 name: decreased resistance to a urea derivative def: "An altered resistance to a urea derivative phenotype where resistance to a derivative of urea is decreased relative to a designated control." [OMP:DAS] synonym: "increased sensitivity to a urea derivative" EXACT [] synonym: "increased sensitivity to hydroxyurea" NARROW [CHEBI:44423] is_a: OMP:0007536 ! altered resistance to a urea derivative created_by: siegele creation_date: 2017-02-24T13:19:13Z [Term] id: OMP:0007539 name: abolished resistance to a urea derivative def: "A decreased resistance to a urea derivative phenotype where resistance to a structural derivative of urea is abolished." [OMP:DAS] is_a: OMP:0007535 ! not resistant to a urea derivative is_a: OMP:0007538 ! decreased resistance to a urea derivative created_by: siegele creation_date: 2017-02-24T13:19:20Z [Term] id: OMP:0007540 name: virus phenotype def: "A microbial phenotype related to the form and structure of a virus." [OMP:DR] is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2017-04-19T13:39:46Z [Term] id: OMP:0007541 name: virion morphology phenotype def: "A virus phenotype related to the form and structure of a virion." [OMP:DR] is_a: OMP:0007540 ! virus phenotype created_by: siegele creation_date: 2017-04-19T13:42:41Z [Term] id: OMP:0007542 name: haploid fruiting phenotype def: "An asexual reproduction phenotype where progeny are contained in a fruiting body that forms as the result of mating between strains of the same mating-type or self-mating." [OMP:DAS] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. synonym: "homokaryotic fruiting phenotype" EXACT [] synonym: "monokaryotic fruiting phenotype" EXACT [] xref: GO:0000905 "sporocarp development involved in asexual reproduction" is_a: OMP:0007066 ! asexual reproduction phenotype created_by: siegele creation_date: 2017-05-29T16:17:29Z [Term] id: OMP:0007543 name: presence of haploid fruiting def: "A haploid fruiting phenotype where a microbe can reproduce by the process of haploid fruiting." [OMP:DAS] synonym: "presence of monokaryotic fruiting" EXACT [] is_a: OMP:0007542 ! haploid fruiting phenotype created_by: siegele creation_date: 2017-05-29T16:19:54Z [Term] id: OMP:0007544 name: absence of haploid fruiting def: "A haploid fruiting phenotype where a microbe is unable to reproduce by the process of haploid fruiting." [OMP:DAS] synonym: "absence of monokaryotic fruiting" EXACT [] is_a: OMP:0007542 ! haploid fruiting phenotype created_by: siegele creation_date: 2017-05-29T16:21:37Z [Term] id: OMP:0007545 name: altered haploid fruiting def: "A haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is altered relative to a designated control." [OMP:DAS] synonym: "altered monokaryotic fruiting" EXACT [] is_a: OMP:0007144 ! altered asexual reproduction is_a: OMP:0007542 ! haploid fruiting phenotype created_by: siegele creation_date: 2017-05-29T16:24:41Z [Term] id: OMP:0007546 name: increased haploid fruiting def: "An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is increased relative to a designated control." [OMP:DAS] synonym: "increased monokaryotic fruiting" EXACT [] is_a: OMP:0007545 ! altered haploid fruiting created_by: siegele creation_date: 2017-05-29T16:27:37Z [Term] id: OMP:0007547 name: decreased haploid fruiting def: "An altered haploid fruiting phenotype where the rate, frequency, timing, or extent of the process of haploid fruiting is decreased relative to a designated control." [OMP:DAS] synonym: "decreased monokaryotic fruiting" EXACT [] is_a: OMP:0007545 ! altered haploid fruiting created_by: siegele creation_date: 2017-05-29T16:27:37Z [Term] id: OMP:0007548 name: abolished haploid fruiting def: "A decreased haploid fruiting phenotype where the process of haploid fruiting is abolished." [OMP:DAS] synonym: "abolished monokaryotic fruiting" EXACT [] is_a: OMP:0007544 ! absence of haploid fruiting is_a: OMP:0007547 ! decreased haploid fruiting created_by: siegele creation_date: 2017-05-29T16:27:37Z [Term] id: OMP:0007549 name: altered biological process phenotype def: "This term was made obsolete because it is a duplicate of OMP:0007351." [OMP:DAS] is_obsolete: true replaced_by: OMP:0007351 created_by: siegele creation_date: 2017-05-29T16:35:44Z [Term] id: OMP:0007550 name: altered population growth - duplicate term def: "DO NOT USE. This is a duplicate of OMP:0007157, which is the correct term to use for annotations." [OMP:DAS] is_obsolete: true replaced_by: OMP:0007157 created_by: siegele creation_date: 2017-05-29T16:37:18Z [Term] id: OMP:0007551 name: increased rate of haploid fruiting def: "An increased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control." [OMP:DAS] synonym: "increased rate of monokaryotic fruiting" EXACT [] is_a: OMP:0007546 ! increased haploid fruiting created_by: siegele creation_date: 2017-05-29T17:45:32Z [Term] id: OMP:0007552 name: decreased rate of haploid fruiting def: "A decreased haploid fruiting phenotype where the rate of the process of haploid fruiting is increased relative to a designated control." [OMP:DAS] synonym: "decreased rate of monokaryotic fruiting" EXACT [] is_a: OMP:0007547 ! decreased haploid fruiting created_by: siegele creation_date: 2017-05-29T17:48:15Z [Term] id: OMP:0007553 name: clamp cell morphology phenotype def: "A hyphal morphology phenotype relating to the size, shape, or appearance of a clamp cell, which is a hook-like projection that forms on the apical cell of a fungal hypha and will form a clamp connection with the pre-apical cell." [DOI:10.1007/978-3-642-22916-9_10, FAO:0000060, OMP:DAS] is_a: OMP:0007556 ! hyphal morphology phenotype created_by: siegele creation_date: 2017-05-30T14:37:57Z [Term] id: OMP:0007554 name: titan cell formation phenotype def: "A microbial phenotype relating to the formation of titan cells, which are large cells produced by fungi that typically exhibit altered capsule structure, a thickened cell wall, increased ploidy, and resistance to nitrosative and oxidative stresses." [FAO:0000063, OMP:DAS, PMID:21821718] is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2017-05-30T15:28:59Z [Term] id: OMP:0007555 name: multicellular microorganism morphology phenotype def: "A microbial phenotype relating to the size, shape, or appearance of a multicellular microorganism." [OMP:DAS] is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2017-05-30T15:39:20Z [Term] id: OMP:0007556 name: hyphal morphology phenotype def: "A multicellular microorganism morphology phenotype relating to the size, shape, or appearance of a hypha, which is a branching filamentous structure that consists of one or more cells surrounded by a tubular cell wall." [OMP:DAS] is_a: OMP:0007555 ! multicellular microorganism morphology phenotype created_by: siegele creation_date: 2017-05-30T16:03:57Z [Term] id: OMP:0007557 name: filamentous growth of a multicellular organism phenotype def: "A filamentous growth phenotype in which a multicellular microbe grows in a threadlike, filamentous shape." [GO:0044181, OMP:DAS] synonym: "hyphal growth phenotype" EXACT [] is_a: OMP:0005243 ! filamentous growth phenotype created_by: siegele creation_date: 2017-05-30T16:34:41Z [Term] id: OMP:0007558 name: clamp cell formation phenotype def: "A xxx phenotype relating to the formation of clamp cells, which are hook-shaped cells found at the septa of dikaryotic hyphae. Clamp cells develop from the most apical cells (tip cells) of the dikaryotic hyphae." [OMP:DAS, PMID:15162390] is_a: OMP:0007557 ! filamentous growth of a multicellular organism phenotype created_by: siegele creation_date: 2017-05-30T16:44:54Z [Term] id: OMP:0007559 name: clamp connection morphology phenotype is_a: OMP:0007556 ! hyphal morphology phenotype created_by: siegele creation_date: 2017-05-30T17:04:06Z [Term] id: OMP:0007560 name: conidiation phenotype def: "An asexual sporulation phenotype relating to the formation of a conidium, which is a nonmotile spore formed by higher fungi; conidia are typically produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores." [FAO:0000024, GO:0048315, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0007142 ! asexual sporulation phenotype created_by: dsiegele creation_date: 2017-06-19T15:29:04Z [Term] id: OMP:0007561 name: meiotic nuclear division phenotype def: "A cellular process phenotype related to one or both of the nuclear divisions that occur as part of the meiotic cell cycle." [GO:0140013, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. synonym: "abnormal meiosis" RELATED [FYPO:0000051] synonym: "normal meiosis" NARROW [FYPO:0000478] is_a: OMP:0007332 ! cellular process phenotype created_by: dsiegele creation_date: 2017-06-20T15:55:03Z [Term] id: OMP:0007562 name: presence of meiotic nuclear division def: "A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions occur." [GO:00140013, OMP:DAS] xref: FYPO:0000478 "normal meiosis" is_a: OMP:0007561 ! meiotic nuclear division phenotype created_by: dsiegele creation_date: 2017-06-20T16:09:31Z [Term] id: OMP:0007563 name: absence of meiotic nuclear division def: "A meiotic nuclear division phenotype in which both the first and second meiotic nuclear divisions are absent." [OMP:DAS] is_a: OMP:0007561 ! meiotic nuclear division phenotype created_by: dsiegele creation_date: 2017-06-20T16:09:31Z [Term] id: OMP:0007564 name: altered meiotic nuclear division def: "A meiotic nuclear division phenotype where one or both of the meiotic nuclear divisons is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007342 ! altered cellular process is_a: OMP:0007561 ! meiotic nuclear division phenotype created_by: dsiegele creation_date: 2017-06-20T16:09:31Z [Term] id: OMP:0007565 name: abolished meiotic nuclear division def: "An altered meiotic nuclear division phenotype in which one or both meiotic nuclear divisions is abolished." [FYPO:0000474, OMP:DAS] xref: FYPO:0000474 "abolished meiosis" is_a: OMP:0007563 ! absence of meiotic nuclear division is_a: OMP:0007564 ! altered meiotic nuclear division created_by: dsiegele creation_date: 2017-06-20T16:12:11Z [Term] id: OMP:0007566 name: abolished meiosis I def: "An abolished meiotic nuclear division phenotype in which the first meiotic nuclear division, in which homologous chromosomes are normally paired and segregated from each other, does not occur." [GO:0007127, OMP:DAS] xref: FYPO:0003378 "abolished meiosis I" is_a: OMP:0007565 ! abolished meiotic nuclear division created_by: dsiegele creation_date: 2017-06-20T16:18:05Z [Term] id: OMP:0007567 name: abolished meiosis II def: "An abolished meiotic nuclear division phenotype in which the second meiotic nuclear division, in which two chromatids in each chromosome are normally separated, does not occur." [GO:0007135, OMP:DAS] xref: FYPO:0003379 "abolished meiosis II" is_a: OMP:0007565 ! abolished meiotic nuclear division created_by: dsiegele creation_date: 2017-06-20T16:18:05Z [Term] id: OMP:0007568 name: resistance to stress phenotype def: "A population growth phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a stress. Typically, a population is deemed resistant to a stress if microbes in the population continue to grow and multiply when exposed to the stress. A population is deemed sensitive to a stress if microbes in the population stop growing and multiplying (and may die) when exposed to the stress." [FYPO:0002046, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.\n\nUse a descendant of this term if you have assayed growth of cells exposed to a stress in culture. If you have assayed the response to a stress at the subcellular or molecular level, consider annotating to one of the descendants of 'response to stress phenotype' (OMP:0000173). synonym: "resistant to a stress" NARROW [] synonym: "sensitive to a stress" NARROW [] is_a: OMP:0007167 ! population growth phenotype created_by: dsiegele creation_date: 2017-06-21T14:34:05Z [Term] id: OMP:0007569 name: resistance to oxidative stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to oxidative stress, such as exposure to reactive oxygen species or reactive nitrogen species." [OMP:DAS] synonym: "resistance to hydrogen peroxide stress" NARROW [] is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T14:51:26Z [Term] id: OMP:0007570 name: presence of resistance to oxidative stress def: "A resistance to oxidative stress phenotype where microbes in a population continue to grow and divide when exposed to oxidative stress." [OMP:DAS] synonym: "resistant to oxidative stress" EXACT [] is_a: OMP:0007569 ! resistance to oxidative stress phenotype created_by: dsiegele creation_date: 2017-06-21T14:58:47Z [Term] id: OMP:0007571 name: absence of resistance to oxidative stress def: "A resistance to oxidative stress phenotype where microbes in a population stop growing (and may die) when exposed to oxidative stress." [OMP:DAS] synonym: "sensitive to oxidative stress" EXACT [] xref: FYPO:0000726 "sensitive to oxidative stress" is_a: OMP:0007569 ! resistance to oxidative stress phenotype created_by: dsiegele creation_date: 2017-06-21T14:59:22Z [Term] id: OMP:0007572 name: altered resistance to stress def: "A resistance to stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a stress is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007157 ! altered population growth is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T15:00:53Z [Term] id: OMP:0007573 name: resistance to acidic pH stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental pH at or below 6.5." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T16:00:11Z [Term] id: OMP:0007574 name: resistance to alkaline pH stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to environmental alkaline pH (typically, pH >7.5)." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T16:01:32Z [Term] id: OMP:0007575 name: resistance to dessication stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to dessication stress." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T16:05:55Z [Term] id: OMP:0007576 name: resistance to radiation stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to radiation." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T16:08:28Z [Term] id: OMP:0007577 name: resistance to chemical stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a chemical." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: dsiegele creation_date: 2017-06-21T16:14:11Z [Term] id: OMP:0007578 name: resistance to cold phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a temperature below the optimal growth temperature of the microbe." [APO:0000148, OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: siegele creation_date: 2017-06-25T18:41:35Z [Term] id: OMP:0007579 name: resistance to heat phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to a temperature above the optimal growth temperature for the microbe." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: siegele creation_date: 2017-06-25T18:42:01Z [Term] id: OMP:0007580 name: presence of resistance to cold def: "A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe." [OMP:DAS] synonym: "cold resistant" EXACT [] synonym: "resistant to low temperature" EXACT [] is_a: OMP:0007578 ! resistance to cold phenotype created_by: siegele creation_date: 2017-06-25T18:48:47Z [Term] id: OMP:0007581 name: absence of resistance to cold def: "A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe." [OMP:DAS] synonym: "cold sensitive" EXACT [YPO:0000148] synonym: "cold sensitivity" EXACT [APO:0000148] is_a: OMP:0007578 ! resistance to cold phenotype created_by: siegele creation_date: 2017-06-25T18:48:47Z [Term] id: OMP:0007582 name: altered resistance to cold def: "A resistance to cold phenotype where the resistance or sensitivity that microbes in a population show when exposed to a temperature below the optimal growth temperature of the microbe is altered relative to a designated control." [OMP:DAS] synonym: "altered cold sensitivity" EXACT [] synonym: "altered resistance to low temperature" EXACT [] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007578 ! resistance to cold phenotype created_by: siegele creation_date: 2017-06-25T18:48:47Z [Term] id: OMP:0007583 name: presence of resistance to heat def: "A resistance to heat phenotype where cells in a population continue to grow and divide when exposed to a temperature above the optimal growth temperature of the microbe." [OMP:DAS] synonym: "heat resistant" EXACT [] synonym: "resistant to high temperature" EXACT [] is_a: OMP:0007579 ! resistance to heat phenotype created_by: siegele creation_date: 2017-06-25T18:54:38Z [Term] id: OMP:0007584 name: absence of resistance to heat def: "A resistance to heat phenotype where cells in a population stop growing (and may die) when exposed to a temperature above the optimal growth temperature of the microbe." [OMP:DAS] synonym: "sensitive to high temperature" EXACT [] is_a: OMP:0007579 ! resistance to heat phenotype created_by: siegele creation_date: 2017-06-25T18:54:39Z [Term] id: OMP:0007585 name: altered resistance to heat def: "A resistance to heat phenotype where the resistance or sensitivity of microbes in a population to a temperature above the optimal growth temperature of the microbe is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007579 ! resistance to heat phenotype created_by: siegele creation_date: 2017-06-25T18:54:39Z [Term] id: OMP:0007586 name: altered resistance to chemical stress def: "A resistance to chemical stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to a chemical stress is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007577 ! resistance to chemical stress phenotype created_by: siegele creation_date: 2017-06-25T19:35:57Z [Term] id: OMP:0007587 name: increased resistance to cold def: "An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007582 ! altered resistance to cold created_by: siegele creation_date: 2017-06-25T22:21:53Z [Term] id: OMP:0007588 name: decreased resistance to cold def: "An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007582 ! altered resistance to cold created_by: siegele creation_date: 2017-06-25T22:21:53Z [Term] id: OMP:0007589 name: abolished resistance to cold def: "A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished." [OMP:DAS] is_a: OMP:0007581 ! absence of resistance to cold is_a: OMP:0007588 ! decreased resistance to cold created_by: siegele creation_date: 2017-06-25T22:21:53Z [Term] id: OMP:0007590 name: increased resistance to heat def: "An altered resistance to heat phenotype where the resistance of microbes in a population to temperatures above the optimal growth temperature is increased relative to a designated control." [OMP:DAS] xref: FYPO:0002626 "resistance to heat" is_a: OMP:0007585 ! altered resistance to heat created_by: siegele creation_date: 2017-06-25T22:26:03Z [Term] id: OMP:0007591 name: decreased resistance to heat def: "An altered resistance to heat phenotype where the resistance of microbes in a population to temperatures above the optimal growth temperature is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007585 ! altered resistance to heat created_by: siegele creation_date: 2017-06-25T22:26:03Z [Term] id: OMP:0007592 name: abolished resistance to heat def: "A decreased resistance to heat phenotype where the resistance of microbes in a population to temperatures above the optimal growth temperature is abolished." [OMP:DAS] synonym: "heat sensitive" EXACT [] synonym: "heat sensitivity" EXACT [APO:00000147] is_a: OMP:0007584 ! absence of resistance to heat is_a: OMP:0007591 ! decreased resistance to heat created_by: siegele creation_date: 2017-06-25T22:26:03Z [Term] id: OMP:0007593 name: resistance to freeze-thaw stress phenotype def: "A resistance to stress phenotype related to the resistance or sensitivity that microbes in a population show when exposed to repeated cycles of freezing and thawing." [OMP:DAS] is_a: OMP:0007568 ! resistance to stress phenotype created_by: siegele creation_date: 2017-06-26T17:11:33Z [Term] id: OMP:0007594 name: altered resistance to radiation stress def: "A resistance to radiation stress phenotype where the resistance or sensitivity that microbes in a population show when exposed to radiation stress is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007572 ! altered resistance to stress is_a: OMP:0007576 ! resistance to radiation stress phenotype created_by: siegele creation_date: 2017-06-26T20:24:54Z [Term] id: OMP:0007595 name: presence of population growth def: "A population growth phenotype where there is reproduction of a microbial population, i.e. the number of individuals in the population increases." [OMP:DAS] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2017-06-27T12:19:09Z [Term] id: OMP:0007596 name: absence of population growth def: "A population growth phenotype where the number of individuals in a microbial population does not increase." [OMP:DAS] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2017-06-27T12:19:09Z [Term] id: OMP:0007597 name: increased population growth def: "An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007157 ! altered population growth created_by: siegele creation_date: 2017-06-27T12:40:34Z [Term] id: OMP:0007598 name: decreased population growth def: "An altered population growth phenotype where the rate, frequency, timing, or extent of reproduction of a microbial population is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007157 ! altered population growth created_by: siegele creation_date: 2017-06-27T12:40:34Z [Term] id: OMP:0007599 name: abolished population growth def: "A decreased population growth phenotype where reproduction of a microbial population is abolished." [OMP:DAS] is_a: OMP:0007598 ! decreased population growth created_by: siegele creation_date: 2017-06-27T12:40:34Z [Term] id: OMP:0007600 name: presence of chromosome segregation def: "A chromosome segregation phenotype where replicated chromosome(s) are physically separated and apportioned as a set to daughter cells." [OMP:DAS] is_a: OMP:0005047 ! chromosome segregation phenotype created_by: siegele creation_date: 2017-06-27T17:34:40Z [Term] id: OMP:0007601 name: absence of chromosome segregation def: "A chromosome segregation phenotype where replicated chromosome(s) are not apportioned as a set to daughter cells." [OMP:DAS] is_a: OMP:0005047 ! chromosome segregation phenotype created_by: siegele creation_date: 2017-06-27T17:34:40Z [Term] id: OMP:0007602 name: DNA break phenotype def: "A genetic material phenotype related to the occurrence of DNA breaks in chromosomal DNA." [OMP:DAS] is_a: OMP:0000290 ! genetic material phenotype created_by: siegele creation_date: 2017-06-27T21:46:34Z [Term] id: OMP:0007603 name: presence of DNA breaks def: "A DNA break phenotype where breaks in chromosomal DNA occur." [OMP:DAS] is_a: OMP:0007602 ! DNA break phenotype created_by: siegele creation_date: 2017-06-27T21:49:30Z [Term] id: OMP:0007604 name: absence of DNA breaks def: "A DNA break phenotype where breaks in chromosomal DNA don't occur." [OMP:DAS] is_a: OMP:0007602 ! DNA break phenotype created_by: siegele creation_date: 2017-06-27T21:49:30Z [Term] id: OMP:0007605 name: altered frequency of DNA breaks def: "A DNA break phenotype where the frequency of breaks in chromosomal DNA is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007602 ! DNA break phenotype created_by: siegele creation_date: 2017-06-27T21:49:30Z [Term] id: OMP:0007606 name: increased frequency of DNA breaks def: "An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007605 ! altered frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:52:51Z [Term] id: OMP:0007607 name: decreased frequency of DNA breaks def: "An altered frequency of DNA breaks phenotype where the frequency of breaks in chromosomal DNA is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007605 ! altered frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:52:51Z [Term] id: OMP:0007608 name: abolished DNA breaks def: "A decreased frequency of DNA breaks phenotype where DNA breaks are abolished." [OMP:DAS] is_a: OMP:0007607 ! decreased frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:52:51Z [Term] id: OMP:0007609 name: presence of single-strand DNA breaks def: "A presence of DNA break phenotype where single-strand breaks in chromosomal DNA occur." [OMP:DAS] is_a: OMP:0007603 ! presence of DNA breaks created_by: siegele creation_date: 2017-06-27T21:53:37Z [Term] id: OMP:0007610 name: presence of double-strand DNA breaks def: "A presence of DNA break phenotype where double-strand breaks in chromosomal DNA occur." [OMP:DAS] is_a: OMP:0007603 ! presence of DNA breaks created_by: siegele creation_date: 2017-06-27T21:53:37Z [Term] id: OMP:0007611 name: absence of single-strand DNA breaks def: "An absence of DNA breaks phenotype where single-strand DNA breaks don't occur." [OMP:DAS] is_a: OMP:0007604 ! absence of DNA breaks created_by: siegele creation_date: 2017-06-27T21:54:07Z [Term] id: OMP:0007612 name: absence of double-strand DNA breaks def: "An absence of DNA breaks phenotype where double-strand DNA breaks don't occur." [OMP:DAS] is_a: OMP:0007604 ! absence of DNA breaks created_by: siegele creation_date: 2017-06-27T21:54:07Z [Term] id: OMP:0007613 name: increased frequency of single-strand DNA breaks def: "An increased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007606 ! increased frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:54:53Z [Term] id: OMP:0007614 name: increased frequency of double-strand DNA breaks def: "An increased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007606 ! increased frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:54:53Z [Term] id: OMP:0007615 name: decreased frequency of single-strand DNA breaks def: "A decreased frequency of DNA breaks phenotype where the frequency of single-strand breaks in chromosomal DNA is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007607 ! decreased frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:55:25Z [Term] id: OMP:0007616 name: decreased frequency of double-strand DNA breaks def: "A decreased frequency of DNA breaks phenotype where the frequency of double-strand breaks in chromosomal DNA is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007607 ! decreased frequency of DNA breaks created_by: siegele creation_date: 2017-06-27T21:55:25Z [Term] id: OMP:0007617 name: Holliday junction structure phenotype def: "A genetic material phenotype related to the occurrence of Holliday junction structures in chromosomal DNA." [OMP:DAS] is_a: OMP:0000290 ! genetic material phenotype created_by: siegele creation_date: 2017-06-28T13:51:06Z [Term] id: OMP:0007618 name: presence of Holliday junction structures def: "A Holliday junction structure phenotype where Holliday junction structures are present in chromosomal DNA." [OMP:DAS] is_a: OMP:0007617 ! Holliday junction structure phenotype created_by: siegele creation_date: 2017-06-28T13:53:37Z [Term] id: OMP:0007619 name: absence of Holliday junction structures def: "A Holliday junction structure phenotype where Holliday junction structures are not present in chromosomal DNA." [OMP:DAS] is_a: OMP:0007617 ! Holliday junction structure phenotype created_by: siegele creation_date: 2017-06-28T13:53:37Z [Term] id: OMP:0007620 name: altered frequency of Holliday junction structures def: "A Holliday junction structure phenotype where the frequency of Holliday junction structures in chromosomal DNA is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007617 ! Holliday junction structure phenotype created_by: siegele creation_date: 2017-06-28T13:53:37Z [Term] id: OMP:0007621 name: increased frequency of Holliday junction structures def: "An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007620 ! altered frequency of Holliday junction structures created_by: siegele creation_date: 2017-06-28T13:56:30Z [Term] id: OMP:0007622 name: decreased frequency of Holliday junction structures def: "An altered frequency of Holliday junction phenotype where the frequency of Holliday junction structures in chromosomal DNA is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007620 ! altered frequency of Holliday junction structures created_by: siegele creation_date: 2017-06-28T13:56:30Z [Term] id: OMP:0007623 name: abolished Holliday junction structures def: "A decreased frequency of Holliday junction structure phenotype where the occurrence of Holliday junction structures in chromosomal DNA is abolished." [OMP:DAS] is_a: OMP:0007622 ! decreased frequency of Holliday junction structures created_by: siegele creation_date: 2017-06-28T13:56:30Z [Term] id: OMP:0007624 name: presence of chitin in cell wall def: "A presence of cell wall phenotype where the cell wall of a microbe contains chitin (CHEBI:17029)." [OMP:DAS] xref: APO:0000199 "chitin deposition" is_a: OMP:0005235 ! presence of cell wall created_by: dsiegele creation_date: 2017-07-05T13:24:55Z [Term] id: OMP:0007625 name: absence of chitin in cell wall def: "A presence of cell wall phenotype where the cell wall of a microbe doesn't contain chitin (CHEBI:17029)." [OMP:DAS] is_a: OMP:0005235 ! presence of cell wall created_by: dsiegele creation_date: 2017-07-05T13:40:27Z [Term] id: OMP:0007626 name: altered cell wall chitin level def: "An altered cell wall morphology phenotype where the amount of chitin (CHEBI:17029) measured in the cell wall of a microbe is altered relative to a designated control." [OMP:DAS] is_a: OMP:0005234 ! altered cell wall morphology is_a: OMP:0007636 ! altered polysaccharide level created_by: dsiegele creation_date: 2017-07-05T13:42:09Z [Term] id: OMP:0007627 name: increased cell wall chitin level def: "An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall of a microbe is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007626 ! altered cell wall chitin level created_by: dsiegele creation_date: 2017-07-05T13:44:03Z [Term] id: OMP:0007628 name: decreased cell wall chitin level def: "An altered cell wall chitin level phenotype where the amount of chitin measured in the cell wall is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007626 ! altered cell wall chitin level created_by: dsiegele creation_date: 2017-07-05T13:44:03Z [Term] id: OMP:0007629 name: abolished chitin in cell wall def: "A decreased cell wall chitin level phenotype where the amount of chitin in the cell wall is abolished." [OMP:DAS] is_a: OMP:0007628 ! decreased cell wall chitin level created_by: dsiegele creation_date: 2017-07-05T13:44:03Z [Term] id: OMP:0007630 name: altered cell wall protein level def: "An altered cell wall morphology phenotype where the amount of a cell wall protein measured in a cell is altered relative to a designated control. Total cell wall protein or a specific cell wall protein may be affected." [OMP:DAS] is_a: OMP:0005234 ! altered cell wall morphology is_a: OMP:0007635 ! altered protein level created_by: dsiegele creation_date: 2017-07-05T14:26:32Z [Term] id: OMP:0007631 name: increased cell wall protein level def: "An altered cell wall protein level where the amount of cell wall protein measured in a cell is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007630 ! altered cell wall protein level created_by: dsiegele creation_date: 2017-07-05T16:47:42Z [Term] id: OMP:0007632 name: cell phenotype def: "A microbial phenotype that is observed at the level of an individual cell." [FYPO:0000002, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. xref: FYPO:0000002 "cell phenotype" is_a: OMP:0000000 ! microbial phenotype created_by: dsiegele creation_date: 2017-07-05T16:09:49Z [Term] id: OMP:0007633 name: cellular physical quality phenotype def: "A cell phenotype that affects any physical object quality of a microbe, such as morphology, number, location, etc., of a cell or a cellular component." [FYPO:0000136, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. xref: FYPO:0000136 "cellular physical quality phenotype" is_a: OMP:0007632 ! cell phenotype created_by: dsiegele creation_date: 2017-07-05T16:19:07Z [Term] id: OMP:0007634 name: altered level of substance in cell def: "A cell phenotype in which the amount of a specific substance measured in a cell is altered relative to a designated control." [FYPO:0000989, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0007637 ! altered cellular physical quality phenotype created_by: dsiegele creation_date: 2017-07-05T16:20:55Z [Term] id: OMP:0007635 name: altered protein level def: "An altered level of substance in a cell phenotype in which the amount of protein measured in a cell is altered relative to a designated control. Total protein or a specific protein may be affected." [FYPO:0000834, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0007634 ! altered level of substance in cell created_by: dsiegele creation_date: 2017-07-05T16:24:26Z [Term] id: OMP:0007636 name: altered polysaccharide level def: "An altered level of substance in cell phenotype in which the amount of a polysaccharide measured in a cell is altered relative to a designated control." [FYPO:0001085, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0007634 ! altered level of substance in cell created_by: dsiegele creation_date: 2017-07-05T16:28:00Z [Term] id: OMP:0007637 name: altered cellular physical quality phenotype def: "A cellular physical quality phenotype where any physical object quality of a microbe, such as morphology, number, location, etc., of a cell or a cellular component is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007633 ! cellular physical quality phenotype is_a: OMP:0007638 ! altered cell phenotype created_by: dsiegele creation_date: 2017-07-05T16:31:01Z [Term] id: OMP:0007638 name: altered cell phenotype def: "A phenotype observed at the level of an individual cell that is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0007632 ! cell phenotype created_by: dsiegele creation_date: 2017-07-05T16:32:45Z [Term] id: OMP:0007639 name: decreased cell wall protein level def: "An altered cell wall protein level where the amount of cell wall protein measured in a cell is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007630 ! altered cell wall protein level created_by: dsiegele creation_date: 2017-07-05T16:47:42Z [Term] id: OMP:0007640 name: abolished cell wall protein level def: "A decreased cell wall protein level phenotype where the amount of cell wall protein is abolished." [OMP:DAS] is_a: OMP:0007639 ! decreased cell wall protein level created_by: dsiegele creation_date: 2017-07-05T16:47:42Z [Term] id: OMP:0007641 name: population growth yield phenotype def: "A population growth phenotype related to the number of individuals in a microbial population produced per amount of nutrient(s) consumed." [OMP:DAS] is_a: OMP:0007167 ! population growth phenotype created_by: siegele creation_date: 2017-07-11T02:11:36Z [Term] id: OMP:0007642 name: altered population growth yield def: "A population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007641 ! population growth yield phenotype created_by: siegele creation_date: 2017-07-11T02:22:26Z [Term] id: OMP:0007643 name: increased population growth yield def: "An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007642 ! altered population growth yield created_by: siegele creation_date: 2017-07-11T02:24:32Z [Term] id: OMP:0007644 name: decreased population growth yield def: "An altered population growth yield phenotype where the number of microbes produced per amount of nutrient(s) consumed is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007642 ! altered population growth yield created_by: siegele creation_date: 2017-07-11T02:24:32Z [Term] id: OMP:0007645 name: microbial lifestyle phenotype def: "A microbial phenotype related to the typical way of life of a microbe." [OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2017-07-24T14:41:58Z [Term] id: OMP:0007646 name: free-living lifestyle phenotype def: "A microbial lifestyle phenotype that is the summative outcome of multiple phenotypes that, acting together, typically provide an organism some advantage while competing for niche space in a fluid medium, unattached to other organisms or non-living, solid material entities." [OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.\n\n\nComment: "May include the expression of flagella, sensing apparati used for\nphoto- and chemotactic behaviour, and quorum sensing pathways." is_a: OMP:0007645 ! microbial lifestyle phenotype created_by: siegele creation_date: 2017-07-24T14:45:18Z [Term] id: OMP:0007647 name: attached lifestyle phenotype def: "A microbial lifestyle phenotype relating to whether a microbe grows and reproduces while physically attached to a surface." [OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype.\n\nMay include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like. synonym: "anchored lifestyle phenotype " EXACT [] synonym: "sessile lifestyle phenotype" RELATED [] is_a: OMP:0007645 ! microbial lifestyle phenotype created_by: siegele creation_date: 2017-07-24T14:59:31Z [Term] id: OMP:0007648 name: presence of an attached lifestyle def: "An attached lifestyle phenotype where a microbe typically grows and reproduces while physically attached to a \n\n\n is the summative outcome of multiple phenotypes that, acting together, typically provide a microbe some advantage while competing for niche space while it is physically anchored to some portion of solid material.\n\nMay include the expression of pili or other structures used for attachment, antibiotic compounds, extracellular matrix remodelling proteins, and the like." [] is_a: OMP:0007647 ! attached lifestyle phenotype created_by: siegele creation_date: 2017-07-26T17:24:06Z [Term] id: OMP:0007649 name: mitomycin resistance phenotype def: "An antimicrobial agent resistance phenotype related to resistance or sensitivity to a mitomycin. Mitomycins are a family of aziridine-containing natural products isolated from Streptomyces." [CHEBI:25357, OMP:DAS] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we recommend that it not be used for direct annotation. Please consider using a more specific term to annotate each phenotype. synonym: "mitomycin C resistance phenotype" NARROW [CHEBI:27504] is_a: OMP:0000274 ! antimicrobial agent resistance phenotype created_by: siegele creation_date: 2017-08-01T19:36:13Z [Term] id: OMP:0007650 name: resistant to mitomycin is_a: OMP:0007649 ! mitomycin resistance phenotype created_by: siegele creation_date: 2017-08-01T19:40:50Z [Term] id: OMP:0007651 name: not resistant to mitomycin is_a: OMP:0007649 ! mitomycin resistance phenotype created_by: siegele creation_date: 2017-08-01T19:40:50Z [Term] id: OMP:0007652 name: altered mitomycin resistance def: "A mitomycin resistance phenotype where resistance to a mitomycin is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007134 ! altered antimicrobial agent resistance phenotype is_a: OMP:0007649 ! mitomycin resistance phenotype created_by: siegele creation_date: 2017-08-01T19:40:50Z [Term] id: OMP:0007653 name: increased resistance to mitomycin def: "An altered resistance to mitomycin phenotype where resistance to a mitomycin is increased relative to a designated control." [OMP:DAS] synonym: "decreased sensitivity to mitomycin" EXACT [CHEBI:25357] synonym: "increased resistance to mitomycin C" RELATED [CHEBI:27504] is_a: OMP:0007652 ! altered mitomycin resistance created_by: siegele creation_date: 2017-08-01T19:42:07Z [Term] id: OMP:0007654 name: decreased resistance to mitomycin def: "An altered resistance to mitomycin phenotype where resistance to a mitomycin is decreased relative to a designated control." [OMP:DAS] synonym: "decreased resistance to mitomycin C" NARROW [CHEBI:27504] synonym: "increased sensitivity to mitomycin" EXACT [CHEBI:25357] synonym: "increased sensitivity to mitomycin C" NARROW [CHEBI:27504] is_a: OMP:0007652 ! altered mitomycin resistance created_by: siegele creation_date: 2017-08-01T19:42:07Z [Term] id: OMP:0007655 name: abolished resistance to mitomycin def: "A decreased resistance to mitomycin phenotype where resistance to a mitomycin is abolished." [OMP:DAS] is_a: OMP:0007651 ! not resistant to mitomycin is_a: OMP:0007654 ! decreased resistance to mitomycin created_by: siegele creation_date: 2017-08-01T19:42:07Z [Term] id: OMP:0007656 name: level of substance in cell phenotype is_a: OMP:0007632 ! cell phenotype created_by: siegele creation_date: 2017-08-02T00:45:28Z [Term] id: OMP:0007657 name: level of cellular reactive oxygen species phenotype def: "A cell phenotype relating to the amount of reactive oxygen species (ROS) measured in a cell." [FYPO:0003004, OMP:DAS] is_a: OMP:0007656 ! level of substance in cell phenotype created_by: siegele creation_date: 2017-08-02T00:47:58Z [Term] id: OMP:0007658 name: presence of cellular reactive oxygen species is_a: OMP:0007657 ! level of cellular reactive oxygen species phenotype created_by: siegele creation_date: 2017-08-02T00:49:40Z [Term] id: OMP:0007659 name: absence of cellular reactive oxygen species is_a: OMP:0007657 ! level of cellular reactive oxygen species phenotype created_by: siegele creation_date: 2017-08-02T00:49:40Z [Term] id: OMP:0007660 name: altered level of cellular reactive oxygen species def: "A cell phenotype where the amount of reactive oxygen species (ROS) measured in a cell is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007657 ! level of cellular reactive oxygen species phenotype created_by: siegele creation_date: 2017-08-02T00:49:40Z [Term] id: OMP:0007661 name: increased level of cellular reactive oxygen species def: "An altered level of cellular reactive oxygen species where the amount of reactive oxygen species (ROS) measured in a cell is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007660 ! altered level of cellular reactive oxygen species created_by: siegele creation_date: 2017-08-02T00:49:40Z [Term] id: OMP:0007662 name: decreased level of cellular reactive oxygen species is_a: OMP:0007660 ! altered level of cellular reactive oxygen species created_by: siegele creation_date: 2017-08-02T00:49:40Z [Term] id: OMP:0007663 name: abolished cellular reactive oxygen species is_a: OMP:0007662 ! decreased level of cellular reactive oxygen species created_by: siegele creation_date: 2017-08-02T00:49:40Z [Term] id: OMP:0007664 name: increased cell width def: "An altered cell size phenotype where the width of a nonspherical microbial cell is increased relative to a designated control." [OMP:DAS] is_a: OMP:0000041 ! increased cell size created_by: siegele creation_date: 2017-09-23T00:47:28Z [Term] id: OMP:0007665 name: decreased cell width def: "An altered cell size phenotype where the width of a nonspherical microbial cell is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0000040 ! decreased cell size created_by: siegele creation_date: 2017-09-23T00:47:28Z [Term] id: OMP:0007666 name: bulging cell morphology def: "An altered cell morphology phenotype where a microbial cell or cells exhibit a prominent bulge not present in the designated control." [OMP:DAS, PMID:27238023] is_a: OMP:0007103 ! altered cell morphology created_by: dsiegele creation_date: 2017-09-28T10:15:36Z [Term] id: OMP:0007667 name: filamenting cell morphology def: "An altered cell shape morphology where microbial cells continue to grow and lengthen without undergoing cell division under conditions where the designated control cell continues to both grow and divide." [OMP:DAS] is_a: OMP:0007103 ! altered cell morphology created_by: dsiegele creation_date: 2017-09-28T10:36:55Z [Term] id: OMP:0007668 name: presence of transport def: "A transport phenotype where a microbe is able to transport a specific substrate(s) into, out of, or within a cell or between cells." [OMP:DAS] is_a: OMP:0005260 ! transport phenotype created_by: siegele creation_date: 2017-10-02T15:29:18Z [Term] id: OMP:0007669 name: absence of transport def: "A transport phenotype where a microbe doesn't transport a specific substrate(s) into, out of, or within a cell or between cells." [OMP:DAS] is_a: OMP:0005260 ! transport phenotype created_by: siegele creation_date: 2017-10-02T15:29:18Z [Term] id: OMP:0007670 name: altered transport def: "A transport phenotype where transport of a specific substrate(s) into, out of, or within a cell or between cells is altered relative to a designated control." [OMP:DAS] is_a: OMP:0005260 ! transport phenotype created_by: siegele creation_date: 2017-10-02T15:29:18Z [Term] id: OMP:0007671 name: increased transport def: "An altered transport phenotype where transport of a substrate(s) is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007670 ! altered transport created_by: siegele creation_date: 2017-10-02T15:29:18Z [Term] id: OMP:0007672 name: decreased transport def: "An altered transport phenotype where transport of a substrate(s) is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007670 ! altered transport created_by: siegele creation_date: 2017-10-02T15:29:18Z [Term] id: OMP:0007673 name: abolished transport def: "A decreased transport phenotype where transport of a substrate(s) is abolished." [OMP:DAS] is_a: OMP:0007669 ! absence of transport is_a: OMP:0007672 ! decreased transport created_by: siegele creation_date: 2017-10-02T15:29:18Z [Term] id: OMP:0007674 name: molecular function phenotype def: "A microbial phenotype that affects a specific molecular function." [FYPO:0000652, OMP:DAS] is_a: OMP:0000000 ! microbial phenotype created_by: siegele creation_date: 2017-10-02T15:42:03Z [Term] id: OMP:0007675 name: transporter activity phenotype def: "A molecular function phenotype that affects a transporter activity in a microbe." [OMP:DAS] is_a: OMP:0007674 ! molecular function phenotype created_by: siegele creation_date: 2017-10-02T15:43:05Z [Term] id: OMP:0007676 name: presence of transporter activity def: "A transporter activity phenotype where a microbe has a specified transporter activity that translocates its substrate at some observed rate." [OMP:DAS] is_a: OMP:0007675 ! transporter activity phenotype created_by: siegele creation_date: 2017-10-02T15:43:54Z [Term] id: OMP:0007677 name: absence of transporter activity def: "A transporter activity phenotype where a microbe lacks a specific transporter activity." [OMP:DAS] is_a: OMP:0007675 ! transporter activity phenotype created_by: siegele creation_date: 2017-10-02T15:43:54Z [Term] id: OMP:0007678 name: altered transporter activity def: "An transporter activity phenotype where the observed rate of a specified transporter activity is altered relative to a designated control." [OMP:DAS] is_a: OMP:0007675 ! transporter activity phenotype created_by: siegele creation_date: 2017-10-02T15:43:54Z [Term] id: OMP:0007679 name: decreased transporter activity def: "An altered transporter activity phenotype where the observed rate of a specified transporter activity is decreased relative to a designated control." [] is_a: OMP:0007678 ! altered transporter activity created_by: siegele creation_date: 2017-10-02T15:44:25Z [Term] id: OMP:0007680 name: increased transporter activity def: "An altered transporter activity phenotype where the observed rate of a specified transporter activity is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007678 ! altered transporter activity created_by: siegele creation_date: 2017-10-02T15:44:25Z [Term] id: OMP:0007681 name: abolished transporter activity def: "A decreased transporter activity phenotype where a specified transporter activity is abolished." [OMP:DAS] is_a: OMP:0007677 ! absence of transporter activity is_a: OMP:0007679 ! decreased transporter activity created_by: siegele creation_date: 2017-10-02T15:44:25Z [Term] id: OMP:0007682 name: terminal phenotype def: "A microbial phenotype that is the phenotype exhibited by a microbe as it becomes inviable." [OMP:DAS] is_a: OMP:0000000 ! microbial phenotype created_by: dsiegele creation_date: 2017-10-10T10:22:47Z [Term] id: OMP:0007683 name: bending cell morphology is_a: OMP:0007103 ! altered cell morphology created_by: dsiegele creation_date: 2017-11-14T10:52:24Z [Term] id: OMP:0007684 name: cell growth phenotype def: "A growth phenotype related to cell growth, which is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present." [GO:0016049, OMP:das] synonym: "normal cell growth" NARROW [FYPO:0002062] is_a: OMP:0000174 ! growth phenotype is_a: OMP:0007332 ! cellular process phenotype created_by: dsiegele creation_date: 2017-11-30T10:36:59Z [Term] id: OMP:0007685 name: presence of cell growth def: "A cell growth phenotype where a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007684 ! cell growth phenotype created_by: dsiegele creation_date: 2017-11-30T10:42:26Z [Term] id: OMP:0007686 name: absence of cell growth def: "A cell growth phenotype where a cell does not irreversibly increase in size over time by accretion and biosynthetic production of matter similar to that already present." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007684 ! cell growth phenotype created_by: dsiegele creation_date: 2017-11-30T10:42:26Z [Term] id: OMP:0007687 name: altered cell growth def: "A cell growth phenotype where the rate, timing, or extent of cell growth is altered relative to a designated control." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007342 ! altered cellular process is_a: OMP:0007684 ! cell growth phenotype created_by: dsiegele creation_date: 2017-11-30T10:42:26Z [Term] id: OMP:0007688 name: decreased cell growth def: "An altered cell growth phenotype where the rate, timing, or extent of cell growth is decreased relative to a designated control." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007687 ! altered cell growth created_by: dsiegele creation_date: 2017-11-30T10:56:24Z [Term] id: OMP:0007689 name: increased cell growth def: "An altered cell growth phenotype where the rate, timing, or extent of cell growth is increased relative to a designated control." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007687 ! altered cell growth created_by: dsiegele creation_date: 2017-11-30T10:56:24Z [Term] id: OMP:0007690 name: abolished cell growth def: "A decreased cell growth phenotype where cell growth is abolished." [OMP:das] is_a: OMP:0007686 ! absence of cell growth is_a: OMP:0007688 ! decreased cell growth created_by: dsiegele creation_date: 2017-11-30T10:56:24Z [Term] id: OMP:0007691 name: vegetative cell growth phenotype def: "A cell growth phenotype related to the growth of a cell in the vegetative growth phase of the life cycle. Cell growth is the process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present." [OMP:das] is_a: OMP:0007684 ! cell growth phenotype created_by: siegele creation_date: 2017-12-01T15:44:00Z [Term] id: OMP:0007692 name: presence of vegetative cell growth def: "A vegetative cell growth phenotype in which cell growth occurs in the vegetative growth phase of the life cycle." [FYPO:0002085, OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007691 ! vegetative cell growth phenotype created_by: siegele creation_date: 2017-12-01T15:47:36Z [Term] id: OMP:0007693 name: absence of vegetative cell growth def: "A vegetative cell growth phenotype in which cell growth does not occur in the vegetative growth phase of the life cycle." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007691 ! vegetative cell growth phenotype created_by: siegele creation_date: 2017-12-01T15:47:36Z [Term] id: OMP:0007694 name: altered vegetative cell growth def: "A vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is altered relative to a designated control." [FYPO:0003154, OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. xref: FYPO:0003154 "abnormal vegetative cell growth" is_a: OMP:0007687 ! altered cell growth is_a: OMP:0007691 ! vegetative cell growth phenotype created_by: siegele creation_date: 2017-12-01T15:47:36Z [Term] id: OMP:0007695 name: increased vegetative cell growth def: "An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is increased relative to a designated control." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007694 ! altered vegetative cell growth created_by: siegele creation_date: 2017-12-01T15:47:36Z [Term] id: OMP:0007696 name: decreased vegetative cell growth def: "An altered vegetative cell growth phenotype in which the rate, timing, or extent of growth of the cell in the vegetative growth phase of the life cycle is decreased relative to a designated control." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007694 ! altered vegetative cell growth created_by: siegele creation_date: 2017-12-01T15:47:37Z [Term] id: OMP:0007697 name: abolished vegetative cell growth def: "A decreased vegetative cell growth phenotype in which growth of the cell in the vegetative growth phase of the life cycle is abolished." [OMP:das] comment: Note that this term refers to growth, i.e. increase in size, of an individual cell. If you have measured the rate or extent of growth of a culture in liquid medium or on plates, use one of the 'cell population growth' terms. is_a: OMP:0007693 ! absence of vegetative cell growth is_a: OMP:0007696 ! decreased vegetative cell growth created_by: siegele creation_date: 2017-12-01T15:47:37Z [Term] id: OMP:0007698 name: cell population phenotype def: "A cell population phenotype that reflects the proportion of the population that survive and develop normally." [FYPO:0002057, OMP:das] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. xref: FYPO:0002057 "cell population phenotype" is_a: OMP:0007006 ! population phenotype created_by: siegele creation_date: 2017-12-04T20:08:24Z [Term] id: OMP:0007699 name: inviable cell population def: "A cell population phenotype in which none of the cells in the population are viable." [FYPO:0002059, OMP:das] xref: FYPO:0002059 is_a: OMP:0007705 ! cell population viability phenotype created_by: siegele creation_date: 2017-12-04T20:14:07Z [Term] id: OMP:0007700 name: inviable vegetative cell population def: "A cell population phenotype in which all cells in the population are inviable in the vegetative growth phase of the life cycle." [FYPO:0002061, OMP:das] xref: FYPO:0002061 "inviable vegetative cell population" is_a: OMP:0007699 ! inviable cell population created_by: siegele creation_date: 2017-12-04T20:15:43Z [Term] id: OMP:0007701 name: inviable spore population def: "A cell population phenotype in which none of the cells in a population of spores are viable. Inviable spores do not germinate." [FYPO:0000647, OMP:das] xref: FYPO:000064 "inviable spore population" is_a: OMP:0007699 ! inviable cell population created_by: siegele creation_date: 2017-12-04T20:19:36Z [Term] id: OMP:0007702 name: decreased cell population viability is_a: OMP:0007459 ! altered cell population viability created_by: siegele creation_date: 2017-12-04T20:23:38Z [Term] id: OMP:0007703 name: increased cell population viability is_a: OMP:0007459 ! altered cell population viability created_by: siegele creation_date: 2017-12-04T20:23:38Z [Term] id: OMP:0007704 name: abolished cell population viability is_a: OMP:0007702 ! decreased cell population viability created_by: siegele creation_date: 2017-12-04T20:23:38Z [Term] id: OMP:0007705 name: cell population viability phenotype is_a: OMP:0007456 ! population viability phenotype is_a: OMP:0007698 ! cell population phenotype created_by: siegele creation_date: 2017-12-04T20:26:35Z [Term] id: OMP:0007706 name: viable spore population def: "A cell population phenotype in which cells in a population of spores are viable." [FYPO:0003612, OMP:das] xref: FYPO:0003612 "viable spore population" is_a: OMP:0007457 ! viable cell population created_by: siegele creation_date: 2017-12-05T00:44:44Z [Term] id: OMP:0007707 name: increased vegetative cell length def: "An increased cell length phenotype where cells in the vegetative growth phase of the life cycle are longer than a designated control." [OMP:das] xref: FYPO:0001122 "elongated vegetative cell" is_a: OMP:0000280 ! increased cell length is_a: OMP:0007713 ! altered vegetative cell size created_by: siegele creation_date: 2017-12-19T16:16:41Z [Term] id: OMP:0007708 name: altered vegetative cell shape def: "An altered cell shape phenotype where the shape of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control." [OMP:das] synonym: "abnormal vegetative cell shape" NARROW [FYPO:0002196] is_a: OMP:0007101 ! altered cell shape created_by: siegele creation_date: 2017-12-19T16:26:51Z [Term] id: OMP:0007709 name: more convex colony def: "An altered colony morphology phenotype in which the colony spreads to a lesser extent and grows vertically to a greater extent, resulting in a more convex shape, than a designated control colony." [OMP:das] synonym: "cone-shaped n" RELATED [] is_a: OMP:0007160 ! altered colony morphology created_by: siegele creation_date: 2017-12-19T16:38:38Z [Term] id: OMP:0007710 name: conjugation without glucose starvation def: "An altered conjugation phenotype in which conjugation takes place in cells that are not subject to glucose starvation." [FYPO:0001864, OMP:das] is_a: OMP:0007416 ! altered conjugation created_by: siegele creation_date: 2017-12-19T16:56:43Z [Term] id: OMP:0007711 name: conjugation without nitrogen starvation def: "An altered conjugation phenotype where conjugation takes place in cells that are not subject to nitrogen starvation." [FYPO:0003031, OMP:das] is_a: OMP:0007416 ! altered conjugation created_by: siegele creation_date: 2017-12-19T16:59:49Z [Term] id: OMP:0007712 name: increased branching of vegetative cell def: "An altered cell shape phenotype observed in the vegetative growth phase of the life cycle in which a daughter cell begins to grow from the lateral portion of the long axis of the cell, and at an angle to the septum or cell division site of the mother cell, resulting in the formation of a single cell that has a branch. This phenotype is not observed in the designated control." [FYPO:0000015, OMP:das] is_a: OMP:0007708 ! altered vegetative cell shape created_by: siegele creation_date: 2017-12-19T17:04:41Z [Term] id: OMP:0007713 name: altered vegetative cell size is_a: OMP:0007083 ! altered cell size created_by: siegele creation_date: 2017-12-19T17:36:21Z [Term] id: OMP:0007714 name: curving vegetative cell def: "An altered cell shape phenotype seen in the vegetative growth phase of the life cycle where a cell is more curved along the long axis than the designated control. In a curved cell, the long axis follows a smooth bend rather than a straight line." [FYPO:0000016, OMP:das] is_a: OMP:0007708 ! altered vegetative cell shape created_by: siegele creation_date: 2017-12-19T17:39:34Z [Term] id: OMP:0007715 name: altered vegetative cell morphology def: "An altered cell morphology phenotype where the cell morphology (i.e. size, shape, and structure) of a cell in the vegetative growth phase of the life cycle is altered relative to a designated control." [FYPO:0001315, OMP:das] is_a: OMP:0007103 ! altered cell morphology created_by: siegele creation_date: 2017-12-19T17:49:16Z [Term] id: OMP:0007716 name: viable vegetative cell def: "A cell phenotype in which a cell in the vegetative growth phase of the life cycle is viable." [FYPO:0001491, OMP:das] is_a: OMP:0007392 ! viable cell created_by: siegele creation_date: 2017-12-19T17:54:52Z [Term] id: OMP:0007717 name: decreased viability of vegetative cell def: "An altered cell viability phenotype in which cells in the vegetative phase of the growth cycle have decreased viability relative to a designated control." [OMP:das] is_a: OMP:0007261 ! decreased cell viability created_by: siegele creation_date: 2017-12-19T17:56:29Z [Term] id: OMP:0007718 name: abolished viability of vegetative cell def: "An altered cell viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is abolished." [OMP:das] is_a: OMP:0007717 ! decreased viability of vegetative cell created_by: siegele creation_date: 2017-12-19T17:58:40Z [Term] id: OMP:0007719 name: decreased cell volume def: "An altered cell size phenotype in which the volume of the cell is decreased relative to a designated control." [OMP:das] is_a: OMP:0000040 ! decreased cell size created_by: siegele creation_date: 2017-12-19T18:18:27Z [Term] id: OMP:0007720 name: decreased vegetative cell volume def: "An altered cell size phenotype in which the volume of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control." [OMP:das] synonym: "small vegetative cell" EXACT [FYPO:0000645] is_a: OMP:0007713 ! altered vegetative cell size is_a: OMP:0007719 ! decreased cell volume created_by: siegele creation_date: 2017-12-19T18:19:35Z [Term] id: OMP:0007721 name: increased cell volume is_a: OMP:0000041 ! increased cell size created_by: siegele creation_date: 2017-12-20T16:40:08Z [Term] id: OMP:0007722 name: increased vegetative cell diameter def: "An altered cell size phenotype where the diameter of cells in the vegetative growth phase of the life cycle is increased relative to a designated control." [OMP:das] is_a: OMP:0005108 ! increased cell diameter is_a: OMP:0007713 ! altered vegetative cell size created_by: siegele creation_date: 2017-12-20T16:41:30Z [Term] id: OMP:0007723 name: decreased vegetative cell length def: "An altered cell size phenotype where the length of a cell in the vegetative growth phase of the life cycle is decreased relative to a designated control." [OMP:das] is_a: OMP:0007084 ! decreased cell length is_a: OMP:0007713 ! altered vegetative cell size created_by: siegele creation_date: 2017-12-20T16:46:25Z [Term] id: OMP:0007724 name: altered vegetative cell viability is_a: OMP:0007260 ! altered cell viability created_by: siegele creation_date: 2017-12-20T16:59:28Z [Term] id: OMP:0007725 name: inviable after spore germination def: "An altered vegetative cell viability phenotype in which a spore germinates but fails to produce dividing cells that can survive under conditions where spores of the designated control germinate and produce dividing cells." [FYPO:0000316, OMP:das] is_a: OMP:0007724 ! altered vegetative cell viability created_by: siegele creation_date: 2017-12-20T16:59:57Z [Term] id: OMP:0007726 name: abolished spore viability def: "An abolished cell viability phenotype in which a spore is unable to survive under conditions in which spores of the designated control strain are able to survive. An inviable spore does not germinate." [FYPO:0002151, OMP:das] synonym: "inviable spore" EXACT [FYPO:0002151] is_a: OMP:0007391 ! abolished cell viability created_by: siegele creation_date: 2017-12-20T17:07:55Z [Term] id: OMP:0007727 name: tapering vegetative cell def: "An altered cell shape phenotype in which a cell in the vegetative growth phase of the life cycle tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of the designated control." [OMP:das] is_a: OMP:0007708 ! altered vegetative cell shape created_by: siegele creation_date: 2017-12-20T17:25:04Z [Term] id: OMP:0007728 name: altered mitotic cell cycle def: "A cellular process phenotype in which the rate, frequency, or occurrence of progression of a cell through a mitotic cell cycle is altered relative to a designated control." [] synonym: "abnormal mitotic cell cycle" NARROW [FYPO:0000059] is_a: OMP:0005136 ! altered cell cycle created_by: siegele creation_date: 2017-12-20T17:40:46Z [Term] id: OMP:0007729 name: altered vegetative cell population viability def: "An altered cell population viability phenotype where the viability of cells in the vegetative growth phase of the life cycle is altered relative to a designated control." [OMP:das] is_a: OMP:0007459 ! altered cell population viability created_by: siegele creation_date: 2017-12-20T23:46:00Z [Term] id: OMP:0007730 name: decreased vegetative cell population viability def: "An altered vegetative cell population viability phenotype where the viability of vegetative cells is decreased relative to a designated control." [OMP:das] is_a: OMP:0007729 ! altered vegetative cell population viability created_by: siegele creation_date: 2017-12-20T23:47:24Z [Term] id: OMP:0007731 name: abolished vegetative cell population viability def: "An altered vegetative cell population viability phenotype where the viability of vegetative cells is abolished." [OMP:das] synonym: "inviable vegetative cell population" EXACT [FYPO:0002061] is_a: OMP:0007730 ! decreased vegetative cell population viability created_by: siegele creation_date: 2017-12-20T23:48:30Z [Term] id: OMP:0007732 name: septation index phenotype def: "A cell population phenotype relating to the septation index of the population. The septation index is the proportion of the population undergoing septation at any given time." [FYPO:0001903, OMP:das] is_a: OMP:0007698 ! cell population phenotype created_by: siegele creation_date: 2017-12-21T00:00:58Z [Term] id: OMP:0007733 name: presence of a septation index is_a: OMP:0007732 ! septation index phenotype created_by: siegele creation_date: 2017-12-21T00:03:57Z [Term] id: OMP:0007734 name: altered septation index def: "A septation index phenotype where the septation index is altered relative to a designated control." [OMP:das] is_a: OMP:0007732 ! septation index phenotype created_by: siegele creation_date: 2017-12-21T00:04:30Z [Term] id: OMP:0007735 name: decreased septation index def: "An altered septation index phenotype in which the septation index is lower than a designated control." [OMP:das] comment: A septation index of zero indicates cell cycle arrest. synonym: "decreased septation index" NARROW [FYPO:0001128] synonym: "reduced septation index" EXACT [] is_a: OMP:0007734 ! altered septation index created_by: siegele creation_date: 2017-12-21T00:05:56Z [Term] id: OMP:0007736 name: increased septation index def: "An altered septation index phenotype where the septation index is increased relative to a designated control." [FYPO:0000650, OMP:das] is_a: OMP:0007734 ! altered septation index created_by: siegele creation_date: 2017-12-21T00:08:19Z [Term] id: OMP:0007737 name: more irregular colony margin def: "An altered colony morphology phenotype where the margin of a colony growing on a solid surface is not symmetrical." [FYPO:0001404, OMP:das] synonym: "irregular colony morphology" EXACT [FYPO:0001404] is_a: OMP:0007160 ! altered colony morphology created_by: siegele creation_date: 2017-12-21T13:33:02Z [Term] id: OMP:0007738 name: spore germ tube morphology phenotype def: "A cell morphology phenotype relating to the slender tubular outgrowth first produced by many spores upon germination." [BTO:0004822, GO:\:0032179, OMP:das] is_a: OMP:0000071 ! cell morphology phenotype created_by: siegele creation_date: 2017-12-21T13:50:25Z [Term] id: OMP:0007739 name: altered spore germ tube morphology def: "A spore germ tube morphology phenotype where the shape, size, or structure of a spore germ tube is altered relative to a designated control." [GO:0032179, OMP:das] is_a: OMP:0007738 ! spore germ tube morphology phenotype created_by: siegele creation_date: 2017-12-21T13:52:14Z [Term] id: OMP:0007740 name: elongated spore germ tube def: "An altered spore germ tube morphology phenotype where the length of the germ tube is increased relative to a designated control." [OMP:das] is_a: OMP:0007739 ! altered spore germ tube morphology created_by: siegele creation_date: 2017-12-21T13:56:59Z [Term] id: OMP:0007741 name: vegetative cell lysis phenotype def: "A cell lysis phenotype relating to lysis of a cell that is in the vegetative growth phase of the life cycle. In cytolysis the plasma membrane ruptures and cytoplasm is lost." [FYPO:0000647, OMP:das] comment: This is a high-level term whose primary purpose is to organize terms beneath it in the ontology, and we expect that it will not be used for direct annotations. Please consider using a more specific term to annotate each phenotype. is_a: OMP:0005336 ! cell lysis phenotype is_a: OMP:0007745 ! vegetative cell phenotype created_by: siegele creation_date: 2018-01-01T13:57:14Z [Term] id: OMP:0007742 name: presence of vegetative cell lysis def: "A cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle occurs." [OMP:das] is_a: OMP:0007741 ! vegetative cell lysis phenotype created_by: siegele creation_date: 2018-01-01T14:02:32Z [Term] id: OMP:0007743 name: absence of vegetative cell lysis def: "A vegetative cell lysis phenotype where cytolysis of a cell in the vegetative growth phase of the life cycle does not occur." [OMP:das] is_a: OMP:0007741 ! vegetative cell lysis phenotype created_by: siegele creation_date: 2018-01-01T14:02:32Z [Term] id: OMP:0007744 name: altered vegetative cell lysis def: "A cell lysis phenotype where the lysis of cells in the vegetative growth phase of the life cycle is altered relative to a designated control." [OMP:das] is_a: OMP:0007741 ! vegetative cell lysis phenotype is_a: OMP:0007746 ! altered vegetative cell phenotype created_by: siegele creation_date: 2018-01-01T14:02:32Z [Term] id: OMP:0007745 name: vegetative cell phenotype def: "A phenotype that is observed at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle." [FYPO:0001320, OMP:das] is_a: OMP:0007632 ! cell phenotype created_by: siegele creation_date: 2018-01-01T14:15:57Z [Term] id: OMP:0007746 name: altered vegetative cell phenotype def: "A phenotype observed at the level of an individual vegetative cell that is altered relative to a designated control." [OMP:das] synonym: "abnormal vegetative cell phenotype" NARROW [FYPO:FYPO\:0003755] is_a: OMP:0007638 ! altered cell phenotype is_a: OMP:0007745 ! vegetative cell phenotype created_by: siegele creation_date: 2018-01-01T14:16:46Z [Term] id: OMP:0008000 name: spore morphology phenotype def: "A microbial phenotype that is related to the form and structure of a spore or spores produced by a microbe." [OMP:KDA] comment: This term was created to organize terms beneath it in the ontology. We recommend that it not be used for annotation unless an appropriate child term cannot be found or requested. xref: FAO:0000019 "spore" is_a: OMP:0000071 ! cell morphology phenotype created_by: kanderson creation_date: 2015-06-03T13:12:00Z [Term] id: OMP:0008001 name: endospore germ cell wall phenotype def: "An endospore external encapsulating structure phenotype that relates to the germ cell wall, a separate layer of peptidoglycan located underneath the cortex and that will become the vegetative cell wall upon endospore germination." [OMP:KDA, PMID:3101583] is_a: OMP:0007229 ! endospore external encapsulating structure phenotype created_by: kanderson creation_date: 2015-06-08T12:07:41Z [Term] id: OMP:0008002 name: absence of an endospore germ cell wall def: "An endospore germ cell wall phenotype where an endospore lacks a germ cell wall." [OMP:KDA] is_a: OMP:0008001 ! endospore germ cell wall phenotype created_by: kanderson creation_date: 2015-06-08T12:10:22Z [Term] id: OMP:0008003 name: presence of an endospore germ cell wall def: "An endospore germ cell wall phenotype where an endospore has a germ cell wall." [OMP:KDA] is_a: OMP:0008001 ! endospore germ cell wall phenotype created_by: kanderson creation_date: 2015-06-08T12:10:22Z [Term] id: OMP:0008004 name: endospore core phenotype def: "An endospore internal structure phenotype that relates to the endospore core, the center of an endospore, which exists in a dehydrated state and contains the bacterial genome, ribosomes, and a large amount of dipicolinic acid." [ISBN:9780073402406, OMP:KDA] is_a: OMP:0008013 ! endospore internal structure phenotype created_by: kanderson creation_date: 2015-06-08T12:14:34Z [Term] id: OMP:0008005 name: absence of the endospore core def: "An endospore core phenotype where an endospore lacks a central core." [OMP:KDA] is_a: OMP:0008004 ! endospore core phenotype created_by: kanderson creation_date: 2015-06-08T12:16:08Z [Term] id: OMP:0008006 name: presence of a core def: "An endospore core phenotype where the central core is present in an endospore." [OMP:KDA] is_a: OMP:0008004 ! endospore core phenotype created_by: kanderson creation_date: 2015-06-08T12:16:08Z [Term] id: OMP:0008007 name: endospore coat phenotype def: "An endospore external encapsulating structure phenotype related to the endospore coat, which is on the exterior of all spores and is composed of many structural proteins that confer additional resistance." [OMP:KDA, PMID:3101583] is_a: OMP:0007229 ! endospore external encapsulating structure phenotype created_by: kanderson creation_date: 2015-06-08T12:18:25Z [Term] id: OMP:0008008 name: absence of an endospore coat def: "An endospore coat phenotype where an endospore lacks a coat layer." [OMP:KDA] is_a: OMP:0008007 ! endospore coat phenotype created_by: kanderson creation_date: 2015-06-08T12:19:49Z [Term] id: OMP:0008009 name: presence of an endospore coat def: "An endospore coat phenotype where an endospore has a coat layer." [OMP:KDA] is_a: OMP:0008007 ! endospore coat phenotype created_by: kanderson creation_date: 2015-06-08T12:19:49Z [Term] id: OMP:0008010 name: outer endospore membrane phenotype def: "An endospore external encapsulating structure phenotype related to the outer endospore membrane, a phospholipid bilayer, derived from the mother cell, located between the endospore cortex and endospore coat." [GO:0043594, OMP:KDA, PMID:3101583] xref: GO:0043594 "outer endospore membrane" is_a: OMP:0007229 ! endospore external encapsulating structure phenotype created_by: kanderson creation_date: 2015-06-08T12:21:48Z [Term] id: OMP:0008011 name: absence of an outer endospore membrane def: "An outer endospore membrane phenotype where an endospore lacks an outer membrane." [OMP:KDA] is_a: OMP:0008010 ! outer endospore membrane phenotype created_by: kanderson creation_date: 2015-06-08T12:23:37Z [Term] id: OMP:0008012 name: presence of an outer endospore membrane def: "An outer endospore membrane phenotype where an endospore has an outer membrane." [OMP:KDA] is_a: OMP:0008010 ! outer endospore membrane phenotype created_by: kanderson creation_date: 2015-06-08T12:23:37Z [Term] id: OMP:0008013 name: endospore internal structure phenotype def: "An endospore morphology phenotype that relates to the inner membrane or core of an endospore." [OMP:KDA] is_a: OMP:0007228 ! endospore morphology phenotype created_by: kanderson creation_date: 2015-06-08T12:43:22Z [Term] id: OMP:0008014 name: inner endospore membrane phenotype def: "An endospore internal structure phenotype related to the inner membrane, which surrounds the core." [OMP:KDA, PMID:3101583] is_a: OMP:0008013 ! endospore internal structure phenotype created_by: kanderson creation_date: 2015-06-08T12:45:57Z [Term] id: OMP:0008015 name: absence of an inner endospore membrane def: "An inner endospore membrane phenotype where an endospore lacks an inner membrane." [OMP:KDA] is_a: OMP:0008014 ! inner endospore membrane phenotype created_by: kanderson creation_date: 2015-06-08T12:50:07Z [Term] id: OMP:0008016 name: presence of an inner endospore membrane def: "An inner endospore membrane phenotype where the endospore has an inner membrane." [OMP:KDA] is_a: OMP:0008014 ! inner endospore membrane phenotype created_by: kanderson creation_date: 2015-06-08T12:50:07Z [Term] id: OMP:0008017 name: endospore formation stopped at stage 0 def: "An interrupted endospore formation phenotype where sporulation is stopped before any visible morphological changes have occurred, and the cell or cells have the appearance of vegetative cells." [OMP:KDA, PMID:3101583] comment: In many bacteria, the first visible morphological change in sporulation is formation of an asymmetric septum that separates the mother cell and forespore compartments. is_a: OMP:0008018 ! interrupted endospore formation created_by: kanderson creation_date: 2015-06-08T13:04:15Z [Term] id: OMP:0008018 name: interrupted endospore formation def: "An altered endospore formation phenotype where development of the endospore is interrupted before the process is complete." [OMP:KDA] is_a: OMP:0006161 ! altered endospore formation created_by: kanderson creation_date: 2015-06-08T13:06:18Z [Term] id: OMP:0008019 name: endospore formation stopped at stage II def: "An interrupted endospore formation phenotype where sporulation is stopped after formation of the septum, but before engulfment of the forespore by the mother cell." [OMP:KDA, PMID:3101583] is_a: OMP:0008018 ! interrupted endospore formation created_by: kanderson creation_date: 2015-06-08T13:07:39Z [Term] id: OMP:0008020 name: endospore formation stopped at stage III def: "An interrupted endospore formation phenotype where sporulation is stopped after engulfment but before production of the endospore cortex and coat." [OMP:KDA, PMID:3101583] is_a: OMP:0008018 ! interrupted endospore formation created_by: kanderson creation_date: 2015-06-08T13:08:51Z [Term] id: OMP:0008021 name: endospore formation stopped at stage IV def: "An interrupted endospore formation phenotype where sporulation is stopped after deposition of the cortex and germ cell wall, but before formation of the endospore coat." [OMP:KDA, PMID:3101583] is_a: OMP:0008018 ! interrupted endospore formation created_by: kanderson creation_date: 2015-06-08T13:09:45Z [Term] id: OMP:0008022 name: endospore formation stopped at stage V def: "An interrupted endospore formation phenotype where sporulation is stopped after formation of the coat, but before the endospore has developed its characteristic resistance properties." [OMP:KDA, PMID:3101583] is_a: OMP:0008018 ! interrupted endospore formation created_by: kanderson creation_date: 2015-06-08T13:10:24Z [Term] id: OMP:0008023 name: endospore formation stopped at stage VI def: "An interrupted endospore formation phenotype where endospore formation and maturation is complete, but before lysis of the mother cell." [OMP:KDA, PMID:3101583] is_a: OMP:0008018 ! interrupted endospore formation created_by: kanderson creation_date: 2015-06-08T13:11:05Z [Term] id: OMP:0008024 name: endospore cortex phenotype def: "An endospore external encapsulating structure phenotype that relates to the endospore cortex, a layer surrounding an endospore that lies between the outer and inner endospore membranes and consists of peptidoglycan which is typically less cross-linked than that found in vegetable cell walls." [GO:0043595, OMP:KDA] xref: GO:0043595 "endospore cortex" is_a: OMP:0007229 ! endospore external encapsulating structure phenotype created_by: kanderson creation_date: 2015-06-08T13:20:48Z [Term] id: OMP:0008025 name: absence of an endospore cortex def: "An endospore cortex phenotype where an endospore lacks a cortex." [OMP:KDA] is_a: OMP:0008024 ! endospore cortex phenotype created_by: kanderson creation_date: 2015-06-08T13:22:06Z [Term] id: OMP:0008026 name: presence of a cortex def: "An endospore cortex phenotype where an endospore has a cortex." [OMP:KDA] is_a: OMP:0008024 ! endospore cortex phenotype created_by: kanderson creation_date: 2015-06-08T13:22:06Z [Term] id: OMP:0008027 name: altered endospore coat def: "An endospore coat phenotype where the endospore coat is altered relative to a designated control." [OMP:KDA] is_a: OMP:0008007 ! endospore coat phenotype created_by: kanderson creation_date: 2015-06-08T13:24:49Z [Term] id: OMP:0008028 name: genetic transfer phenotype def: "A genetic material phenotype relating to the ability of microbes to serve as a donor of recipient in the transfer of genetic material." [] is_a: OMP:0000290 ! genetic material phenotype created_by: Tianyizhou creation_date: 2017-10-23T14:35:30Z [Term] id: OMP:0008029 name: altered endospore cortex def: "An endospore cortex phenotype where the endospore cortex is altered relative to a designated control." [OMP:KDA] is_a: OMP:0008024 ! endospore cortex phenotype created_by: kanderson creation_date: 2015-06-08T13:30:48Z [Term] id: OMP:0008030 name: altered endospore germ cell wall def: "An endospore germ cell wall phenotype where the germ cell wall is altered relative to a designated control." [OMP:KDA] is_a: OMP:0008001 ! endospore germ cell wall phenotype created_by: kanderson creation_date: 2015-06-08T13:31:51Z [Term] id: OMP:0008031 name: altered exosporium def: "An endospore exosporium phenotype where the exposporium is altered relative to a designated control." [OMP:KDA] is_a: OMP:0007230 ! endospore exosporium phenotype created_by: kanderson creation_date: 2015-06-08T13:32:47Z [Term] id: OMP:0008032 name: altered outer membrane def: "An outer endospore membrane phenotype where the outer membrane is altered relative to a designated control." [OMP:KDA] is_a: OMP:0008010 ! outer endospore membrane phenotype created_by: kanderson creation_date: 2015-06-08T13:33:31Z [Term] id: OMP:0008033 name: altered core def: "An endospore core phenotype where the core is altered relative to a designated control." [OMP:KDA] is_a: OMP:0008004 ! endospore core phenotype created_by: kanderson creation_date: 2015-06-08T13:34:26Z [Term] id: OMP:0008034 name: altered inner endospore membrane def: "An inner endospore membrane phenotype where the inner membrane is altered relative to a designated control." [OMP:KDA] is_a: OMP:0008014 ! inner endospore membrane phenotype created_by: kanderson creation_date: 2015-06-08T13:35:10Z [Term] id: OMP:0008035 name: natural competence phenotype def: "A genetic transfer phenotype related to the ability of microbes to take up extracellular DNA from the environment under natural conditions." [GO:, OMP:tz] is_a: OMP:0008028 ! genetic transfer phenotype created_by: Tianyizhou creation_date: 2017-10-23T14:46:29Z [Term] id: OMP:0008036 name: absence of natural competence def: "A natural competence phenotype where a microbe lacks the ability to be transformed by taking up extracellular DNA from the environment." [OMP:tz] is_a: OMP:0008035 ! natural competence phenotype created_by: Tianyizhou creation_date: 2017-10-23T14:52:25Z [Term] id: OMP:0008037 name: altered natural competence def: "A natural competence phenotype where the rate, frequency, timing, or extent of natural competence is altered relative to a designated control." [] is_a: OMP:0007085 ! altered microbial phenotype is_a: OMP:0008035 ! natural competence phenotype created_by: Tianyizhou creation_date: 2017-10-23T14:52:29Z [Term] id: OMP:0008038 name: presence of natural competence def: "A natural competence phenotype where a microbe has the ability to be transformed by taking up extracellular DNA from the environment." [OMP:tz] is_a: OMP:0008035 ! natural competence phenotype created_by: Tianyizhou creation_date: 2017-10-23T14:52:33Z [Term] id: OMP:0008039 name: decreased natural competence def: "An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is decreased relative to a designated control." [] is_a: OMP:0008037 ! altered natural competence created_by: Tianyizhou creation_date: 2017-10-23T15:15:23Z [Term] id: OMP:0008040 name: increased natural competence def: "An altered natural competence phenotype where the where the rate, frequency, timing, or extent of natural competence is increased relative to a designated control." [OMP:tz] is_a: OMP:0008037 ! altered natural competence created_by: Tianyizhou creation_date: 2017-10-23T15:15:35Z [Term] id: OMP:0008041 name: abolished natural competence def: "A decreased natural competence phenotype where the ability to be transformed by taking up extracellular DNA is abolished." [OMP:tz] is_a: OMP:0008036 ! absence of natural competence is_a: OMP:0008039 ! decreased natural competence created_by: Tianyizhou creation_date: 2017-10-23T17:55:59Z [Term] id: PATO:0000001 name: quality namespace: quality alt_id: PATO:0000072 def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities" [PATOC:GVG] synonym: "trait" EXACT [] property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000004 name: mobility namespace: quality def: "A quality of inhering in a bearer by virtue of the bearer's disposition to move freely." [PATOC:GVG] comment: Should be defined using translocation. subset: attribute_slim subset: disposition_slim subset: scalar_slim is_a: PATO:0001018 ! physical quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000033 name: concentration of namespace: quality def: "A quality inhering in a substance by virtue of the amount of the bearer's there is mixed with another substance." [Wikipedia:http\://en.wikipedia.org/wiki/concentration] subset: attribute_slim subset: relational_slim subset: scalar_slim synonym: "concentration" EXACT [] is_a: PATO:0002182 ! molecular quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000044 name: frequency namespace: quality def: "A physical quality which inheres in a bearer by virtue of the number of the bearer's repetitive actions in a particular time." [Wikipedia:http\://en.wikipedia.org/wiki/frequency] subset: attribute_slim subset: scalar_slim is_a: PATO:0000161 ! rate property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000051 name: morphology namespace: quality def: "A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure." [PATOC:GVG] subset: attribute_slim is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000052 name: shape namespace: quality alt_id: PATO:0001647 def: "A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATOC:GVG] comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects. subset: attribute_slim synonym: "relational shape quality" EXACT [] is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000056 name: trophic quality namespace: quality def: "An organismal quality inhering in a bearer by virtue of the bearer's disposition to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Trophic_level] subset: attribute_slim subset: disposition_slim synonym: "nutritional quality" RELATED [] is_a: PATO:0001995 ! organismal quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000057 name: occurrence namespace: quality alt_id: PATO:0000156 alt_id: PATO:0000158 def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence." [PATOC:GVG] subset: attribute_slim subset: hpo_slim synonym: "incidence" EXACT [] synonym: "temporal" BROAD [] is_a: PATO:0002323 ! temporal distribution quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000060 name: spatial pattern namespace: quality alt_id: PATO:0000132 alt_id: PATO:0001565 def: "A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts." [PATOC:GVG] subset: attribute_slim subset: hpo_slim synonym: "distribution" EXACT [] synonym: "pattern" RELATED [] is_a: PATO:0000140 ! position property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000068 name: qualitative namespace: quality comment: TODO: define this or obsolete it and move children somewhere else. is_a: PATO:0000001 ! quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000069 name: deviation(from_normal) namespace: quality def: "A quality inhering in a bearer by virtue of the whether the bearer differs from normal or average." [PATOC:GVG] subset: attribute_slim is_a: PATO:0000068 ! qualitative property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000070 name: amount namespace: quality alt_id: PATO:0000053 alt_id: PATO:0000071 alt_id: PATO:0001169 alt_id: PATO:0001226 def: "The number of entities of this type that are part of the whole organism." [PATOC:GVG] comment: This term was originally named "presence". It has been renamed to reduce ambiguity. Consider annotating with the reciprocal relation,PATO:0001555, has_number_of. For example, rather than E=fin ray Q=count in organism C=10, say E=organism Q=has number of E2= fin ray C=10. subset: attribute_slim synonym: "count" EXACT [] synonym: "count in organism" RELATED [] synonym: "number" RELATED [] synonym: "presence" RELATED [] synonym: "presence or absence in organism" EXACT [] synonym: "quantitative" EXACT [] is_a: PATO:0000068 ! qualitative relationship: reciprocal_of PATO:0001555 ! has number of property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000117 name: size namespace: quality def: "A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude." [WordNet:WordNet] subset: attribute_slim subset: scalar_slim is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000122 name: length namespace: quality def: "A 1-D extent quality which is equal to the distance between two points." [PATOC:GVG] subset: attribute_slim subset: mpath_slim subset: scalar_slim is_a: PATO:0001708 ! 1-D extent property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000133 name: orientation namespace: quality alt_id: PATO:0000137 def: "A spatial quality inhering in a bearer by virtue of the bearer's placement which is defined by the angle between the bearer and an axis, or the angle between the bearer and another object." [PATOC:JE] subset: attribute_slim subset: relational_slim synonym: "amount of rotation" RELATED [] synonym: "angle" RELATED [] synonym: "angular magnitude" RELATED [] synonym: "angular placement" EXACT [] synonym: "plane angle" RELATED [] is_a: PATO:0000140 ! position property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000140 name: position namespace: quality alt_id: PATO:0001032 alt_id: PATO:0001631 def: "A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity." [PATOC:GVG] subset: attribute_slim synonym: "location" EXACT [] synonym: "placement" EXACT [] synonym: "relational spatial quality" EXACT [] is_a: PATO:0001018 ! physical quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000141 name: structure namespace: quality alt_id: PATO:0001452 def: "A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATOC:GVG] subset: attribute_slim synonym: "conformation" BROAD [VT:1000738] synonym: "relational structural quality" EXACT [] is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000146 name: temperature namespace: quality def: "A physical quality of the thermal energy of a system." [PATOC:GVG] subset: attribute_slim subset: scalar_slim is_a: PATO:0001018 ! physical quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000150 name: texture namespace: quality def: "A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics." [PATOC:GVG] subset: attribute_slim is_a: PATO:0000051 ! morphology property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000161 name: rate namespace: quality def: "A quality of a single process inhering in a bearer by virtue of the bearer's occurrence per unit time." [PATOC:melissa] subset: attribute_slim subset: scalar_slim is_a: PATO:0002062 ! physical quality of a process property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000169 name: viability namespace: quality def: "An organismal quality inhering in a bearer or a population by virtue of the bearer's disposition to survive and develop normally or the number of surviving individuals in a given population." [PATOC:GVG] subset: attribute_slim subset: disposition_slim is_a: PATO:0001995 ! organismal quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000297 name: arrested namespace: quality alt_id: PATO:0001508 def: "A quality of a process which ends earlier than the natural end time or reference process." [PATOC:LC] comment: TODO: the definition is incorrect. See absent. subset: value_slim synonym: "abolished" EXACT [] synonym: "incomplete" RELATED [] is_a: PATO:0002052 ! decreased occurrence is_a: PATO:0002324 ! offset quality relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000330 name: irregular spatial pattern namespace: quality def: "A spatial pattern inhering in a bearer by virtue of the bearer's magnitude of or the relationships between its repeated parts lack consistency." [PATOC:GVG] subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern relationship: is_opposite_of PATO:0000440 ! regular spatial pattern property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000402 name: branched namespace: quality def: "A branchiness quality inhering in a bearer by virtue of the bearer's having branches." [WordNet:WordNet] subset: cell_quality subset: mpath_slim subset: value_slim synonym: "ramified" EXACT [] synonym: "ramiform" EXACT [] is_a: PATO:0002009 ! branchiness relationship: is_opposite_of PATO:0000414 ! unbranched property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000406 name: curved namespace: quality def: "A curvature quality inhering in a bearer by virtue of the bearer's having or being marked by a curve or smoothly rounded bend." [WordNet:WordNet] subset: cell_quality subset: value_slim synonym: "bowing" NARROW [] synonym: "curled" RELATED [] is_a: PATO:0001591 ! curvature property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000411 name: circular namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center." [thefreedictionary.com:thefreedictionary.com] subset: cell_quality subset: mpath_slim subset: value_slim synonym: "round" RELATED [] synonym: "rounded" RELATED [] is_a: PATO:0000947 ! elliptic property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000414 name: unbranched def: "A branchiness quality inhering in a bearer by virtue of the bearer's lacking branches." [PATOC:GVG] subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002009 ! branchiness property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000422 name: auxotrophic namespace: quality def: "A nutritional quality inhering in a bearer by virtue of the bearer's inability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Auxotrophic] subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality relationship: is_opposite_of PATO:0000423 ! prototrophic property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000423 name: prototrophic def: "A nutritional quality inhering in a bearer by virtue of the bearer's ability to synthesize a particular organic compound required for its growth." [Wikipedia:http\://en.wikipedia.org/wiki/Prototrophic] subset: disposition_slim subset: value_slim is_a: PATO:0000056 ! trophic quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000440 name: regular spatial pattern def: "A pattern quality inhering in a bearer by virtue of the bearer's having a repeatable or predictable placement." [PATOC:GVG] subset: mpath_slim subset: relational_slim subset: value_slim is_a: PATO:0000060 ! spatial pattern property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000460 name: abnormal namespace: quality def: "A quality inhering in a bearer by virtue of the bearer's deviation from normal or average." [PATOC:GVG] subset: abnormal_slim subset: mpath_slim subset: value_slim synonym: "aberrant" RELATED [] synonym: "atypia" RELATED [] synonym: "atypical" RELATED [] synonym: "defective" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) relationship: is_opposite_of PATO:0000461 ! normal property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000461 name: normal namespace: quality def: "A quality inhering in a bearer by virtue of the bearer's exhibiting no deviation from normal or average." [PATOC:GVG] subset: abnormal_slim subset: mpath_slim subset: value_slim synonym: "average" RELATED [] is_a: PATO:0000069 ! deviation(from_normal) relationship: is_opposite_of PATO:0000460 ! abnormal property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000462 name: absent namespace: quality alt_id: PATO:0001996 def: "A quality denoting the lack of an entity." [thefreedictionary.:thefreedictionary.] comment: Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters. subset: absent_slim subset: mpath_slim subset: value_slim synonym: "absence" EXACT [] synonym: "absent from organism" EXACT [] is_a: PATO:0000070 ! amount [Term] id: PATO:0000467 name: present namespace: quality def: "A quality inhering in a bearer by virtue of the bearer's existence." [PATOC:GVG] subset: absent_slim subset: value_slim synonym: "present in organism" RELATED [] is_a: PATO:0000070 ! amount relationship: is_opposite_of PATO:0000462 ! absent property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000498 name: increased duration namespace: quality alt_id: PATO:0000715 def: "A duration quality of a process which is relatively high." [PATOC:GVG] subset: value_slim synonym: "chronic" RELATED [] synonym: "high time" EXACT [] synonym: "increased period" EXACT [] synonym: "increased time" EXACT [] synonym: "prolonged period" RELATED [] synonym: "slow time" RELATED [] is_a: PATO:0001309 ! duration is_a: PATO:0002304 ! increased process quality intersection_of: PATO:0001309 ! duration intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000499 ! decreased duration property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000499 name: decreased duration namespace: quality alt_id: PATO:0000716 def: "A duration quality of a process which is relatively low." [PATOC:GVG] subset: value_slim synonym: "decreased period" EXACT [] synonym: "decreased time" EXACT [] synonym: "fast time" RELATED [] synonym: "low period" EXACT [] synonym: "shortened period" EXACT [] is_a: PATO:0001309 ! duration is_a: PATO:0002302 ! decreased process quality intersection_of: PATO:0001309 ! duration intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000498 ! increased duration property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000502 name: delayed namespace: quality def: "A quality of a process which starts later than the natural start time or the reference process." [PATOC:LC] subset: value_slim synonym: "late" RELATED [] is_a: PATO:0002325 ! onset quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000573 name: increased length namespace: quality def: "A length quality which is relatively large." [PATOC:GVG] subset: value_slim synonym: "long" EXACT [] is_a: PATO:0000122 ! length is_a: PATO:0000586 ! increased size intersection_of: PATO:0000122 ! length intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000574 ! decreased length property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000574 name: decreased length namespace: quality def: "A length quality which is relatively small." [PATOC:GVG] subset: value_slim synonym: "short" EXACT [] synonym: "shortened" RELATED [] synonym: "stubby" RELATED [] is_a: PATO:0000122 ! length is_a: PATO:0000587 ! decreased size intersection_of: PATO:0000122 ! length intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000573 ! increased length property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000586 name: increased size namespace: quality alt_id: PATO:0001202 def: "A size quality which is relatively high." [PATOC:GVG] subset: value_slim synonym: "big" RELATED [] synonym: "enlarged" RELATED [] synonym: "expanded" RELATED [] synonym: "great" RELATED [] synonym: "large" RELATED [] is_a: PATO:0000117 ! size is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000117 ! size intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000587 ! decreased size property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000587 name: decreased size namespace: quality def: "A size quality which is relatively low." [PATOC:GVG] subset: value_slim synonym: "hypoplasia" NARROW [] synonym: "reduced" RELATED [] synonym: "small" RELATED [] synonym: "tiny" RELATED [] synonym: "underdeveloped" NARROW [] is_a: PATO:0000117 ! size is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000117 ! size intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000586 ! increased size property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000591 name: increased thickness namespace: quality def: "A thickness which is relatively high." [PATOC:GVG] subset: mpath_slim subset: value_slim synonym: "high thickness" EXACT [] synonym: "stout" EXACT [] synonym: "thick" RELATED [] synonym: "thickened" EXACT [] is_a: PATO:0000586 ! increased size is_a: PATO:0000915 ! thickness intersection_of: PATO:0000915 ! thickness intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000592 ! decreased thickness property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000592 name: decreased thickness namespace: quality def: "A thickness which is relatively low." [PATOC:GVG] subset: mpath_slim subset: value_slim synonym: "low thickness" EXACT [] synonym: "slender" RELATED [] synonym: "thin" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000915 ! thickness intersection_of: PATO:0000915 ! thickness intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000591 ! increased thickness property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000595 name: increased volume namespace: quality def: "A volume which is relatively high." [PATOC:GVG] subset: mpath_slim subset: value_slim synonym: "high volume" EXACT [] synonym: "large volume" RELATED [] is_a: PATO:0000586 ! increased size is_a: PATO:0000918 ! volume intersection_of: PATO:0000918 ! volume intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000596 ! decreased volume property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000596 name: decreased volume namespace: quality def: "A volume which is relatively low." [PATOC:GVG] subset: mpath_slim subset: value_slim synonym: "low volume" EXACT [] synonym: "small volume" RELATED [] is_a: PATO:0000587 ! decreased size is_a: PATO:0000918 ! volume intersection_of: PATO:0000918 ! volume intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000595 ! increased volume property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000617 name: bent namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length." [PATOC:MAH] subset: value_slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000628 name: mislocalised namespace: quality alt_id: PATO:0000621 def: "A positional quality inhering in a bearer by virtue the bearer's being changed in abnormal position." [PATOC:GVG] subset: disposition_slim subset: value_slim synonym: "ectopic" EXACT [] synonym: "mislocalized" EXACT [] is_a: PATO:0002181 ! displaced property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000642 name: fused with namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's being merged with another entity." [PATOC:GVG] subset: mpath_slim subset: relational_slim subset: value_slim synonym: "coalesced" RELATED [] synonym: "fused" EXACT [] synonym: "fused to" EXACT [] synonym: "joined with" RELATED [] synonym: "merged with" RELATED [] is_a: PATO:0000141 ! structure relationship: is_opposite_of PATO:0000651 ! unfused from property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000651 name: unfused from def: "A structural quality inhering in a bearer by virtue of the bearer's being no longer merged with another entity." [PATOC:nw] subset: relational_slim subset: value_slim synonym: "unfused" EXACT [] is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000689 name: continuous namespace: quality alt_id: PATO:0000429 def: "A quality of a single process inhering in a bearer by virtue of the bearer's being uninterrupted in time, sequence, substance, or extent." [thefreedictionary.com:thefreedictionary.com] subset: value_slim synonym: "uninterrupted" EXACT [] is_a: PATO:0000057 ! occurrence relationship: is_opposite_of PATO:0000690 ! discontinuous property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000690 name: discontinuous namespace: quality alt_id: PATO:0000426 def: "A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions." [thefreedictionary.com:thefreedictionary.com] subset: value_slim synonym: "intermittent" RELATED [] synonym: "interrupted" EXACT [] is_a: PATO:0000057 ! occurrence relationship: is_opposite_of PATO:0000689 ! continuous property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000694 name: premature namespace: quality alt_id: PATO:0000691 alt_id: PATO:0002086 def: "A quality of a process which starts earlier than the natural start time or the reference process." [PATO:LC] subset: value_slim synonym: "advanced" EXACT [] synonym: "early" RELATED [] synonym: "precocious" RELATED [] is_a: PATO:0002325 ! onset quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000700 name: rough namespace: quality alt_id: PATO:0001616 def: "A texture quality inhering in a bearer by virtue of the bearer's irregular surface." [PATOC:GVG] subset: mpath_slim subset: value_slim synonym: "coarse" EXACT [] is_a: PATO:0000150 ! texture relationship: is_opposite_of PATO:0000701 ! smooth property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000701 name: smooth def: "A texture quality inhering in a bearer by virtue of the bearer's processing a surface free of roughness or irregularities." [PATOC:GVG] subset: mpath_slim subset: value_slim is_a: PATO:0000150 ! texture property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000718 name: lethal (sensu genetics) namespace: quality def: "A viability quality inhering in a population by virtue of the bearer's long term survival inability." [PATOC:GVG] subset: disposition_slim subset: value_slim is_a: PATO:0000169 ! viability property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000719 name: viable namespace: quality def: "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive or the long term survival ability of a given population." [PATOC:GVG] subset: disposition_slim subset: value_slim is_a: PATO:0000169 ! viability property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000911 name: decreased rate namespace: quality def: "A rate which is relatively low." [PATO:GVG] subset: mpath_slim subset: value_slim synonym: "slow rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002302 ! decreased process quality intersection_of: PATO:0000161 ! rate intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000912 ! increased rate property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000912 name: increased rate namespace: quality def: "A rate which is relatively high." [PATO:GVG] subset: mpath_slim subset: value_slim synonym: "fast rate" EXACT [] synonym: "high rate" EXACT [] is_a: PATO:0000161 ! rate is_a: PATO:0002304 ! increased process quality intersection_of: PATO:0000161 ! rate intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0000911 ! decreased rate property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000915 name: thickness namespace: quality def: "A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width." [WordNet:WordNet] subset: attribute_slim subset: scalar_slim is_a: PATO:0001708 ! 1-D extent property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000918 name: volume namespace: quality def: "A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies." [PATOC:GVG] subset: attribute_slim subset: mpath_slim subset: scalar_slim is_a: PATO:0001710 ! 3-D extent property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000944 name: sharpness namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's having a sharp or tapered end or point." [PATOC:GVG] subset: attribute_slim subset: cell_quality synonym: "apiculate" EXACT [] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000947 name: elliptic namespace: quality def: "A spheroid quality inhering in a bearer by virtue of the bearer's being oval with two axes of symmetry, as produced by a conical section." [PATOC:GVG] subset: cell_quality subset: mpath_slim subset: value_slim synonym: "ellipse-shaped" EXACT [] synonym: "ellipsoid" EXACT [] synonym: "elliptical" EXACT [] synonym: "oval" RELATED [] synonym: "ovoid" RELATED [] is_a: PATO:0002318 ! superelliptic property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000970 name: permeability namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's disposition to being permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] subset: attribute_slim subset: disposition_slim subset: scalar_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000982 name: permeable namespace: quality def: "A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a gas or liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] subset: disposition_slim subset: value_slim synonym: "porous" RELATED [] is_a: PATO:0000970 ! permeability relationship: is_opposite_of PATO:0000983 ! impermeable property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0000983 name: impermeable def: "A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion)." [Biology-online:Biology-online] subset: disposition_slim subset: value_slim is_a: PATO:0000970 ! permeability property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001018 name: physical quality namespace: quality alt_id: PATO:0002079 def: "A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities." [PATOC:GVG] subset: attribute_slim synonym: "relational physical quality" EXACT [] xref: Wikipedia:Physical_property is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001159 name: concentrated namespace: quality def: "A concentration quality inhering in a bearer by virtue of the bearer's exhibiting concentration." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0000033 ! concentration of property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001162 name: increased concentration namespace: quality def: "A concentration which is higher relative to the normal or average." [PATOC:GVG] subset: relational_slim subset: value_slim synonym: "high concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0001159 ! concentrated intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001163 ! decreased concentration property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001163 name: decreased concentration namespace: quality def: "A concentration which is lower relative to the normal or average." [PATOC:GVG] subset: relational_slim subset: value_slim synonym: "low concentration" EXACT [] is_a: PATO:0001159 ! concentrated is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001159 ! concentrated intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001162 ! increased concentration property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001236 name: process quality namespace: quality alt_id: PATO:0001239 alt_id: PATO:0001240 def: "A quality which inheres in an process." [PATOC:GVG] comment: See comments of relational quality of a physical entity. synonym: "quality of a process" EXACT [] synonym: "quality of occurrent" EXACT [] synonym: "quality of process" EXACT [] synonym: "relational quality of occurrent" EXACT [] is_a: PATO:0000001 ! quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001241 name: physical object quality namespace: quality alt_id: PATO:0001237 alt_id: PATO:0001238 def: "A quality which inheres in a continuant." [PATOC:GVG] comment: Relational qualities are qualities that hold between multiple entities. Normal (monadic) qualities such as the shape of a eyeball exist purely as a quality of that eyeball. A relational quality such as sensitivity to light is a quality of that eyeball (and connecting nervous system) as it relates to incoming light waves/particles. synonym: "monadic quality of a continuant" EXACT [] synonym: "monadic quality of an object" NARROW [] synonym: "monadic quality of continuant" NARROW [] synonym: "multiply inhering quality of a physical entity" EXACT [] synonym: "quality of a continuant" EXACT [] synonym: "quality of a single physical entity" EXACT [] synonym: "quality of an object" EXACT [] synonym: "quality of continuant" EXACT [] xref: snap:Quality is_a: PATO:0000001 ! quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001305 name: increased temperature namespace: quality alt_id: PATO:0000678 def: "A temperature which is relatively high." [PATOC:GVG] subset: value_slim synonym: "high temperature" EXACT [] synonym: "hot" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000146 ! temperature intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001306 ! decreased temperature property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001306 name: decreased temperature namespace: quality alt_id: PATO:0000677 def: "A temperature which is relatively low." [PATOC:GVG] subset: value_slim synonym: "cold" EXACT [] synonym: "low temperature" EXACT [] is_a: PATO:0000146 ! temperature is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000146 ! temperature intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001305 ! increased temperature property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001309 name: duration namespace: quality alt_id: PATO:0000081 def: "A process quality inhering in a bearer by virtue of the bearer's magnitude of the temporal extent between the starting and ending point." [PATOC:mellybelly] subset: attribute_slim subset: hpo_slim synonym: "period" EXACT [] synonym: "time" RELATED [] is_a: PATO:0002062 ! physical quality of a process property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001355 name: convex def: "A shape quality that obtains by virtue of the bearer having inward facing edges; having a surface or boundary that curves or bulges outward, as the exterior of a sphere." [PATOC:GVG] subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001367 name: lobate namespace: quality def: "A surface feature shape quality inhering in a bearer by virtue of the bearer's having deeply undulating edges forming lobes." [PATOC:GVG] subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001925 ! surface feature shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001396 name: cellular quality namespace: quality def: "A monadic quality of continuant that exists at the cellular level of organisation." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001404 name: nucleate quality namespace: quality def: "A cellular quality inhering in a bearer by virtue of bearer's number of nuclei." [PATOC:GVG] subset: attribute_slim is_a: PATO:0001396 ! cellular quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001406 name: binucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having two nuclei." [Biology-online:Biology-online] subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0001908 ! multinucleate property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001407 name: mononucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one nucleus." [Biology-online:Biology-online] subset: cell_quality subset: mpath_slim subset: value_slim is_a: PATO:0002505 ! nucleated property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001419 name: sharp namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's terminating in a point or edge." [PATOC:GVG] subset: cell_quality subset: value_slim is_a: PATO:0000944 ! sharpness property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001435 name: attachment quality namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity." [PATOC:GVG] subset: attribute_slim subset: relational_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001442 name: wholeness namespace: quality def: "A structural quality inhering in a bearer by virtue of whether the bearer includes all its components." [thefreedictionary.com:thefreedictionary.com] subset: attribute_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001444 name: broken namespace: quality alt_id: PATO:0001443 alt_id: PATO:0001820 def: "A broken quality inhering in a bearer by virtue of the bearer's being broken open." [PATOC:GVG] subset: value_slim synonym: "burst" EXACT [] synonym: "cracked" RELATED [] synonym: "fractured" EXACT [] synonym: "fragmented" EXACT [] synonym: "hemorrhaged" RELATED [] synonym: "ruptured" EXACT [] synonym: "split" RELATED [] synonym: "torn" RELATED [] is_a: PATO:0001442 ! wholeness property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001453 name: detached from namespace: quality def: "An attachment quality inhering in a bearer by virtue of the bearer's lacking connection or association with another entity." [PATOC:GVG] subset: mpath_slim subset: relational_slim subset: value_slim synonym: "detached" EXACT [] is_a: PATO:0001435 ! attachment quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001457 name: sensitivity of a process namespace: quality def: "A quality of a process inhering in bearer by virtue of the bearer's disposition to respond to stimulation." [PATOC:GVG] subset: attribute_slim subset: disposition_slim subset: relational_slim synonym: "sensitivity of occurrent" EXACT [] is_a: PATO:0002062 ! physical quality of a process property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001499 name: spherical namespace: quality alt_id: PATO:0000408 def: "A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter)." [WordNet:WordNet] subset: cell_quality subset: mpath_slim subset: value_slim synonym: "globular" EXACT [] synonym: "rotund" RELATED [] is_a: PATO:0001865 ! spheroid relationship: has_cross_section PATO:0000411 ! circular property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001514 name: delaminated namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's lacking some outer layer." [PATOC:cjm] subset: mpath_slim subset: value_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001551 name: increased sensitivity of a process namespace: quality def: "A sensitivity of a process which is higher than normal or average." [PATO:GVG] subset: relational_slim subset: value_slim synonym: "high sensitivity of occurrent" EXACT [] synonym: "increased sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002304 ! increased process quality intersection_of: PATO:0001457 ! sensitivity of a process intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001552 ! decreased sensitivity of a process property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001552 name: decreased sensitivity of a process namespace: quality def: "A sensitivity of a process which is lower than normal or average." [PATO:GVG] subset: relational_slim subset: value_slim synonym: "decreased sensitivity of occurrent" EXACT [] synonym: "low sensitivity of occurrent" EXACT [] is_a: PATO:0001457 ! sensitivity of a process is_a: PATO:0002302 ! decreased process quality intersection_of: PATO:0001457 ! sensitivity of a process intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001551 ! increased sensitivity of a process property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001555 name: has number of namespace: quality def: "The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts." [PATOC:CJM] subset: attribute_slim subset: relational_slim synonym: "cardinality" RELATED [] synonym: "extra or missing physical or functional parts" EXACT [] synonym: "has or lacks parts of type" EXACT [] synonym: "mereological quality" EXACT [] synonym: "number" RELATED [] synonym: "number of" EXACT [] xref: OBO_REL:has_part is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001558 name: lacking processual parts namespace: quality def: "A quality of a process inhering in a bearer by virtue of the bearer's lacking a processual part as specified by the additional entity." [PATOC:GVG] subset: relational_slim subset: value_slim is_a: PATO:0001564 ! extra or missing processual parts property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001561 name: having extra processual parts namespace: quality def: "A quality of a process inhering in a bearer by virtue of the bearer's having additional processual parts." [PATOC:GVG] subset: relational_slim subset: value_slim synonym: "having supernumerary processual parts" EXACT [] is_a: PATO:0001564 ! extra or missing processual parts property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001564 name: extra or missing processual parts namespace: quality def: "A quality of a process inhering in a bearer by virtue of the bearer's processual parts." [PATOC:GVG] subset: relational_slim is_a: PATO:0001236 ! process quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001577 name: increased permeability namespace: quality def: "A permeability which is relatively high." [PATO:GVG] subset: disposition_slim subset: value_slim synonym: "high permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0000982 ! permeable intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0001578 ! decreased permeability property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001578 name: decreased permeability def: "A permeability which is relatively low." [PATO:GVG] subset: disposition_slim subset: value_slim synonym: "low permeability" EXACT [] is_a: PATO:0000982 ! permeable is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0000982 ! permeable intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001591 name: curvature namespace: quality def: "A surface shape quality inhering in a bearer by virtue of the bearer's exhibiting a degree of bending." [WordNet:WordNet] subset: attribute_slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001598 name: protruding namespace: quality alt_id: PATO:0001644 def: "A quality inhering in a bearer by virtue of the bearer's extending out above or beyond a surface or boundary." [WordNet:WordNet] subset: value_slim synonym: "protruding" EXACT [] synonym: "relational protruding quality" EXACT [] is_a: PATO:0000140 ! position property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001629 name: aggregated namespace: quality def: "A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole." [WordNet:WordNet] subset: mpath_slim subset: value_slim synonym: "clumped" EXACT [] synonym: "clustered" EXACT [] is_a: PATO:0000330 ! irregular spatial pattern property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001630 name: dispersed namespace: quality def: "A positional quality inhering in a bearer by virtue of the bearer's being distributed or spread over a considerable extent." [WordNet:WordNet] subset: mpath_slim subset: value_slim is_a: PATO:0000140 ! position property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001643 name: stubby namespace: quality def: "A size quality inhering in a bearer by virtue of the bearer's having a short, stocky build." [thefreedictionary.com:thefreedictionary.com] subset: value_slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001708 name: 1-D extent namespace: quality def: "A size quality inhering in an bearer by virtue of the bearer's extension in one dimension." [PATOC:GVG] subset: attribute_slim synonym: "1-D size" EXACT [] is_a: PATO:0000117 ! size property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001710 name: 3-D extent namespace: quality def: "A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions." [PATOC:GVG] subset: attribute_slim synonym: "3D size" EXACT [] is_a: PATO:0000117 ! size property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001786 name: split namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions." [die.net:die.net] subset: mpath_slim subset: value_slim synonym: "clefted" EXACT [] synonym: "divided" RELATED [] synonym: "forked" RELATED [] synonym: "septate" NARROW [] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001798 name: kinked namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's having multiple angles in its length." [thefreedictionary.com:thefreedictionary.com] subset: cell_quality subset: value_slim synonym: "tightly curled" RELATED [] synonym: "twisted" RELATED [] is_a: PATO:0000617 ! bent property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001821 name: imperforate def: "A structural quality inhering in a bearer by virtue of the bearer's having no opening." [thefreedictionary.com:thefreedictionary.com] subset: mpath_slim subset: value_slim is_a: PATO:0002014 ! structure, cavities property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001846 name: tangled namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's being entwined and difficult to unravel." [answers.com:answers.com] subset: mpath_slim subset: value_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001847 name: constricted namespace: quality alt_id: PATO:0001837 def: "A structural quality inhering in a bearer by virtue of the bearer's being drawn together, compressed or squeezed physically." [WordNet:WordNet] subset: value_slim synonym: "stenosis" EXACT [] synonym: "stenotic" EXACT [] synonym: "stricture" EXACT [] is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001857 name: concave namespace: quality def: "A shape quality in a bearer by virtue of the bearer's curving inward." [WordNet:WordNet] subset: cell_quality subset: value_slim is_a: PATO:0002005 ! concavity relationship: is_opposite_of PATO:0001355 ! convex property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001865 name: spheroid namespace: quality alt_id: PATO:0001864 def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating an ellipse about one of its principal axes. Includes spheres and oblate/prolate spheroids." [Wikipedia:http\://en.wikipedia.org/wiki/Spheroid] subset: cell_quality subset: mpath_slim subset: value_slim synonym: "sphericality" RELATED [] is_a: PATO:0002007 ! convex 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001878 name: sigmoid namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's consisting of two curves, in opposite directions. S-shaped." [PATOC:CJM] subset: cell_quality subset: value_slim synonym: "S-shaped" EXACT [] synonym: "sigmoidal" EXACT [] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001905 name: has normal numbers of parts of type namespace: quality def: "The bearer of this quality has_part = n, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] subset: relational_slim synonym: "having physical part" EXACT [] is_a: PATO:0001555 ! has number of property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001908 name: multinucleate namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having more than one nucleus." [PATOC:GVG] subset: mpath_slim subset: value_slim is_a: PATO:0002505 ! nucleated property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001925 name: surface feature shape namespace: quality def: "A surface shape quality inhering in a bearer by virtue of the bearer's shape of features present on its surface or outer shell." [PATOC:CJM] comment: This quality either inheres directly in the surface, or in the entity that has the surface. For example, to say that a particular fly wing is curved is shorthand for saying the wing has a surface which is curved. subset: attribute_slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001995 name: organismal quality namespace: quality def: "A quality that inheres in an entire organism or part of an organism." [PATOC:CJM] is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0001999 name: lacks parts or has fewer parts of type namespace: quality def: "The bearer of this quality has_part < n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly. This case includes the limit case, where the bearer lacks all parts of the specified type." [PATOC:CJM] subset: relational_slim synonym: "loss of" EXACT [] is_a: PATO:0002083 ! altered number of property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002000 name: lacks all parts of type namespace: quality alt_id: PATO:0001557 def: "A quality of physical entities inhering in a bearer by virtue of the bearer's lacking a physical part as specified by the additional entity." [PATOC:CJM] comment: Example: [E=organism Q=lacks_all_parts_of_type E2=Wing] - applies to an organism. A relational quality in which the bearer entity has no parts of the specified type. The bearer of this quality has_part = 0 of the indicated entity type, where a comparable organism usually has at least 1 part of the same type. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e lacks all parts of type X at time t, then there exists no instances x of X at t such that x part_of e that has no wings, where wings are normally present in that organism type. In OWL this is equivalent to a restriction on the OBO_REL:has_part relation with cardinality=0, i.e has_part 0 E2. subset: relational_slim synonym: "lacks all physical parts of type" EXACT [] xref: OBO_REL:lacks_part is_a: PATO:0001999 ! lacks parts or has fewer parts of type property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002001 name: has fewer parts of type namespace: quality alt_id: PATO:0001569 def: "The bearer of this quality has_part < n AND has_part > 0 of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part. Formally: If a bearer entity e has fewer parts of type X at time t, then the number of instances x of X at t such that x part_of e is < n, where n is either the normal number for comparable entities, or n is stated explicitly." [PATOC:CJM] comment: Example: [E=hand Q=has_fewer_parts_of_type E2=digit] - applies to an organism that has no less fingers than is normal for organisms of that type. subset: relational_slim synonym: "decreased number of" EXACT [] synonym: "has decreased number of" EXACT [] synonym: "has fewer physical parts of type" EXACT [] is_a: PATO:0001999 ! lacks parts or has fewer parts of type is_a: PATO:0002303 ! decreased object quality intersection_of: PATO:0001999 ! lacks parts or has fewer parts of type intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002002 ! has extra parts of type property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002002 name: has extra parts of type namespace: quality alt_id: PATO:0001560 def: "The bearer of this quality has_part > n of the indicated entity type, where n is the normal amount for a comparable organism. Note that the bearer of the quality is the whole, not the part." [PATOC:CJM] comment: In polydactyly, the bearer of the quality is the hand, and the entity type being counted is 'finger'. In EQ syntax, E=hand, Q= E2=finger. subset: relational_slim synonym: "has extra parts of" EXACT [] synonym: "has increased number of" EXACT [] synonym: "having extra physical parts" EXACT [] synonym: "having supernumerary physical parts" EXACT [] synonym: "increased number of" EXACT [] is_a: PATO:0002083 ! altered number of is_a: PATO:0002305 ! increased object quality intersection_of: PATO:0002083 ! altered number of intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002001 ! has fewer parts of type property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002005 name: concavity namespace: quality def: "Surface shape that refers to the inward or outward curvature of the surface." [PATOC:MAH] subset: attribute_slim is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002006 name: 2-D shape namespace: quality def: "A shape that inheres in a 2 dimensional entity, such as a cross section or projection of a 3 dimensional entity." [PATOC:CJM] subset: attribute_slim synonym: "2-D projection" RELATED [] synonym: "cross-sectional" RELATED [] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002007 name: convex 3-D shape namespace: quality def: "A complete three dimensional shape in which for every line connecting pair of points on the object is within the object. Or: a shape lacking cavities. Contrast: concave." [PATOC:CJM] comment: Use this term or an is_a child of this term when the entire shape of the object is known. subset: attribute_slim xref: Image:http\://upload.wikimedia.org/wikipedia/commons/0/06/Convex_polygon_illustration1.png is_a: PATO:0002266 ! 3-D shape relationship: has_cross_section PATO:0002006 ! 2-D shape relationship: is_opposite_of PATO:0002008 ! concave 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002008 name: concave 3-D shape namespace: quality def: "A complete three dimensional shape in which there is a line connecting pair of points on the object that lies outside the object. Or: a shape with cavities. Contrast: concave." [PATOC:CJM] subset: attribute_slim xref: Image:http\://en.wikipedia.org/wiki/Image\:Convex_polygon_illustration2.png is_a: PATO:0002266 ! 3-D shape relationship: has_part PATO:0001857 ! concave relationship: is_opposite_of PATO:0002007 ! convex 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002009 name: branchiness namespace: quality def: "A shape quality inhering in a bearer by virtue of the degree to which there are subdivisions or offshoots in a bearer entity." [PATOC:MAH] subset: attribute_slim subset: cell_quality is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002014 name: structure, cavities namespace: quality def: "A structural quality that inheres in a bearer by virtue of the bearer's containing hollow areas." [PATOC:GVG] subset: attribute_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0002051 name: increased occurrence namespace: quality def: "An occurrence which is relatively high." [PATOC:GVG] synonym: "increased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002304 ! increased process quality intersection_of: PATO:0000057 ! occurrence intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002052 ! decreased occurrence property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2009-03-26T11:10:11Z [Term] id: PATO:0002052 name: decreased occurrence namespace: quality def: "An occurrence which is relatively low." [PATOC:GVG] synonym: "decreased incidence" EXACT [] is_a: PATO:0000057 ! occurrence is_a: PATO:0002302 ! decreased process quality intersection_of: PATO:0000057 ! occurrence intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002051 ! increased occurrence property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2009-03-26T11:12:35Z [Term] id: PATO:0002062 name: physical quality of a process namespace: quality subset: attribute_slim is_a: PATO:0001236 ! process quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: george creation_date: 2009-06-05T09:16:46Z [Term] id: PATO:0002083 name: altered number of namespace: quality def: "Having extra or fewer parts." [PATOC:GVG] subset: attribute_slim subset: relational_slim is_a: PATO:0001555 ! has number of property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2009-09-21T10:41:58Z [Term] id: PATO:0002112 name: perforate namespace: quality alt_id: PATO:0000649 def: "A structural quality inhering in a bearer by virtue of the bearer's having a hole or holes, especially a row or array of small holes." [answers.com:answers.com] subset: mpath_slim subset: value_slim synonym: "permeable" RELATED [] synonym: "pierced" RELATED [] is_a: PATO:0002014 ! structure, cavities relationship: is_opposite_of PATO:0001821 ! imperforate property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: george creation_date: 2009-10-05T03:37:05Z [Term] id: PATO:0002181 name: displaced namespace: quality def: "A positional quality inhering in a bearer by virtue the bearer's being changed in position." [PATOC:GVG] subset: attribute_slim is_a: PATO:0000140 ! position property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2010-03-01T02:56:33Z [Term] id: PATO:0002182 name: molecular quality namespace: quality alt_id: PATO:0002061 def: "A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc." [PATOC:GVG] synonym: "relational molecular quality" EXACT [] is_a: PATO:0001241 ! physical object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2010-03-10T03:18:15Z [Term] id: PATO:0002213 name: obclavate namespace: quality def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's shape being inversely clavate." [PATOC:GVG] subset: cell_quality subset: value_slim is_a: PATO:0002008 ! concave 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: george creation_date: 2010-07-08T01:47:09Z [Term] id: PATO:0002240 name: teardrop-shaped namespace: quality def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's shape resembling falling drop." [url:wordnetweb.princeton.edu/perl/webwn] subset: value_slim synonym: "drop shaped" EXACT [] is_a: PATO:0002007 ! convex 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: george creation_date: 2010-07-23T02:31:11Z [Term] id: PATO:0002258 name: pointed namespace: quality def: "A shape quality inhering in a bearer by virtue of the bearer's having a point." [PATOC:http\://www.merriam-webster.com/dictionary/pointed] subset: value_slim is_a: PATO:0001419 ! sharp property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: george creation_date: 2010-09-08T03:15:16Z [Term] id: PATO:0002266 name: 3-D shape namespace: quality def: "A shape that inheres in a 3 dimensional entity." [PATOC:OREGON] is_a: PATO:0000052 ! shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: george creation_date: 2010-10-05T12:31:16Z [Term] id: PATO:0002300 name: increased quality namespace: quality def: "A quality that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) intersection_of: PATO:0000001 ! quality intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002301 ! decreased quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-06-16T06:39:43Z [Term] id: PATO:0002301 name: decreased quality namespace: quality def: "A quality that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0000069 ! deviation(from_normal) intersection_of: PATO:0000001 ! quality intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002300 ! increased quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-06-16T06:40:15Z [Term] id: PATO:0002302 name: decreased process quality namespace: quality def: "A quality of a process that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002301 ! decreased quality intersection_of: PATO:0001236 ! process quality intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002304 ! increased process quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-06-16T06:50:59Z [Term] id: PATO:0002303 name: decreased object quality namespace: quality def: "A quality of an object that has a value that is decreased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002301 ! decreased quality intersection_of: PATO:0001241 ! physical object quality intersection_of: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: decreased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002305 ! increased object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-06-16T06:51:54Z [Term] id: PATO:0002304 name: increased process quality namespace: quality def: "A quality of a process that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001236 ! process quality is_a: PATO:0002300 ! increased quality intersection_of: PATO:0001236 ! process quality intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002302 ! decreased process quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-06-16T06:53:08Z [Term] id: PATO:0002305 name: increased object quality namespace: quality def: "A quality of an object that has a value that is increased compared to normal or average." [PATOC:GVG] is_a: PATO:0001241 ! physical object quality is_a: PATO:0002300 ! increased quality intersection_of: PATO:0001241 ! physical object quality intersection_of: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: increased_in_magnitude_relative_to PATO:0000461 ! normal relationship: is_opposite_of PATO:0002303 ! decreased object quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-06-16T06:54:01Z [Term] id: PATO:0002318 name: superelliptic namespace: quality def: "A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt" [wiktionary:superellipse] synonym: "Lamé curve" EXACT [] is_a: PATO:0002006 ! 2-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-10-12T12:45:16Z [Term] id: PATO:0002323 name: temporal distribution quality namespace: quality def: "A temporal distribution pattern of process occurrences within a regulation/reference process." [PATOC:LC] subset: attribute_slim is_a: PATO:0002062 ! physical quality of a process property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-11-22T01:12:28Z [Term] id: PATO:0002324 name: offset quality namespace: quality def: "The temporal relation between the end of the process with respect to a reference process." [PATOC:LC] subset: attribute_slim synonym: "completeness" RELATED [GOC:CJM] synonym: "extent" RELATED [GOC:CJM] is_a: PATO:0002323 ! temporal distribution quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-11-23T11:46:00Z [Term] id: PATO:0002325 name: onset quality namespace: quality def: "The temporal relation between the start of the process with respect to a reference process." [PATOC:LC] subset: attribute_slim synonym: "initiation" RELATED [] is_a: PATO:0002323 ! temporal distribution quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: George Gkoutos creation_date: 2011-11-23T11:47:34Z [Term] id: PATO:0002345 name: lemon-shaped namespace: quality def: "A convex 3-D shape quality inhering in a bearer by virtue of the bearer's having a quadric surface in three dimensions obtained by rotating less than half of a circular arc about an axis passing through the endpoints of the arc" [PATOC:MH] subset: value_slim is_a: PATO:0002007 ! convex 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: gkoutos creation_date: 2012-01-31T03:55:16Z [Term] id: PATO:0002346 name: snowman-shaped namespace: quality def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's having two connected parts, roughly spherical, of different sizes." [PATOC:MH] subset: value_slim is_a: PATO:0002008 ! concave 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: gkoutos creation_date: 2012-01-31T03:58:10Z [Term] id: PATO:0002505 name: nucleated namespace: quality def: "A nucleate quality inhering in a bearer by virtue of the bearer's having one or more nucleus." [PATOC:GVG] subset: mpath_slim subset: value_slim is_a: PATO:0001404 ! nucleate quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: gkoutos creation_date: 2013-10-21T05:44:34Z [Term] id: PATO:0005012 name: complete structure def: "A structural quality inhering in a bearer by virtue of the bearer being fully formed compared to entities lacking parts." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: wasila.dahdul creation_date: 2014-09-25T15:11:47Z [Term] id: PATO:0005013 name: incomplete structure namespace: quality def: "A structural quality inhering in a bearer by virtue of the bearer's lacking parts or having a reduced form compared to fully formed entities." [PATOC:WD] subset: value_slim is_a: PATO:0000141 ! structure relationship: is_opposite_of PATO:0005012 ! complete structure property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl created_by: wasila.dahdul creation_date: 2014-09-25T15:12:35Z [Term] id: PATO:0015019 name: C-shaped namespace: quality def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter C." [github:mah11, https://github.com/pato-ontology/pato/issues/96] subset: value_slim is_a: PATO:0002008 ! concave 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Term] id: PATO:0015020 name: J-shaped namespace: quality def: "A concave 3-D shape quality inhering in a bearer by virtue of the bearer's being shaped in the form of the letter J." [github:mah11, https://github.com/pato-ontology/pato/issues/96] subset: value_slim is_a: PATO:0002008 ! concave 3-D shape property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Typedef] id: adjacent_to name: adjacent_to namespace: sequence def: "A geometric operator, specified in Egenhofer 1989. Two features meet if they share a junction on the sequence. X adjacent_to Y iff X and Y share a boundary but do not overlap." [PMID:20226267, SO:ke] subset: SOFA property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl [Typedef] id: contains name: contains namespace: sequence def: "The inverse of contained_by." [PMID:20226267] comment: Example: pre_miRNA contains miRNA_loop. property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl is_transitive: true created_by: kareneilbeck creation_date: 2010-10-14T01:32:15Z [Typedef] id: correlates_with name: correlates_with namespace: quality [Typedef] id: decreased_in_magnitude_relative_to name: decreased_in_magnitude_relative_to namespace: quality def: "q1 decreased_in_magnitude_relative_to q2 if and only if magnitude(q1) < magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] comment: This relation is used to determine the 'directionality' of relative qualities such as 'decreased strength', relative to the parent type, 'strength'. property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl domain: PATO:0000001 ! quality range: PATO:0000001 ! quality is_transitive: true is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to [Typedef] id: decreased_relative_to name: decreased_relative_to def: "P decreased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is greater than P." [ECO:MCC] is_transitive: true is_obsolete: true created_by: Marcus creation_date: 2014-02-13T01:39:46Z [Typedef] id: derives_from name: derives_from namespace: sequence subset: SOFA property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl is_transitive: true [Typedef] id: different_in_magnitude_relative_to name: different_in_magnitude_relative_to namespace: quality def: "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl domain: PATO:0000001 ! quality range: PATO:0000001 ! quality [Typedef] id: directly_associated_with name: directly_associated_with namespace: quality def: "q1 directly_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 increases if the magnitude of q2 is increased, or the magnitude of q1 decreases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] comment: Example: 'Lewy bodies increased number related to dystrophic neurite increased number' (from annotation of PMID:8740227 in http://ccdb.ucsd.edu/1.0/NDPO.owl#ndpo_404). Here the increase in the number of lewy bodies is directly_associated_with the increase in the number of dystrophic neurites.\nAssociation is weaker than correlation or proportionality. These relations may be later added to PATO. property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl domain: PATO:0000001 ! quality range: PATO:0000001 ! quality created_by: cjm creation_date: 2009-08-26T02:50:08Z [Typedef] id: during name: during xref: GOREL:0000002 property_value: usage "Identifies a process, cell cycle stage or life stage during which a phenotype is observed or relevant." xsd:string [Typedef] id: ends_during name: ends_during namespace: external xref: RO:0002093 property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl [Typedef] id: exists_during name: exists_during xref: GOREL:0000032 property_value: usage "Identifies a process, cell cycle stage or life stage during which a phenotype that affects a continuant, such as a cellular component or the level of a substance, is observed or relevant." xsd:string [Typedef] id: happens_during name: happens_during namespace: external xref: GOREL:0000001 xref: RO:0002092 property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl property_value: usage "Identifies a process, cell cycle stage or life stage during which a phenotype that affects an occurrent, i.e. a biological process or molecular function, is observed or relevant." xsd:string is_transitive: true is_a: ends_during ! ends_during [Typedef] id: has_cross_section name: has_cross_section namespace: quality def: "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2." [PATOC:CJM] comment: Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round. property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Typedef] id: has_dividend_entity name: has_dividend_entity namespace: quality [Typedef] id: has_dividend_quality name: has_dividend_quality namespace: quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl range: PATO:0000001 ! quality is_a: has_ratio_quality ! has_ratio_quality [Typedef] id: has_divisor_entity name: has_divisor_entity namespace: quality [Typedef] id: has_divisor_quality name: has_divisor_quality namespace: quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl range: PATO:0000001 ! quality is_a: has_ratio_quality ! has_ratio_quality [Typedef] id: has_functional_parent name: has functional parent namespace: chebi_ontology [Typedef] id: has_origin name: has_origin namespace: sequence property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl [Typedef] id: has_output name: has_output def: "p has output c if either: p has direct output c or p has output input c. Implies that if p happens, c always ensues." [GOC:curators] xref: RO:0002234 property_value: usage "Def comes from gorel file. Used in FYPO where one phenotype (p) always results in an additional phenotype (c) as a consequence. There may be other ways to get phenotype (c)." xsd:string [Typedef] id: has_parent_hydride name: has parent hydride namespace: chebi_ontology [Typedef] id: has_part name: has_part namespace: sequence def: "Inverse of part_of." [http://precedings.nature.com/documents/3495/version/1] comment: Example: operon has_part gene. xref: BFO:0000051 property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl property_value: usage "Used in FYPO to link phenotypes that are collections of features to phenotypes representing the features." xsd:string is_transitive: true [Typedef] id: has_quality name: has_quality namespace: sequence comment: The relationship between a feature and an attribute. property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl [Typedef] id: has_ratio_quality name: has_ratio_quality namespace: quality property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl range: PATO:0000001 ! quality [Typedef] id: has_role name: has role namespace: chebi_ontology xref: RO:0000087 [Typedef] id: increased_in_magnitude_relative_to name: increased_in_magnitude_relative_to namespace: quality def: "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] comment: This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'. property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl domain: PATO:0000001 ! quality range: PATO:0000001 ! quality is_transitive: true is_a: different_in_magnitude_relative_to ! different_in_magnitude_relative_to [Typedef] id: increased_relative_to name: increased_relative_to def: "P increased_relative_to P' if and only if: given any process p that instantiates P under condition (genotype or environment) c, there is some process p' that instantiates P' under condition c', and P' is less than P." [ECO:MCC] is_transitive: true is_obsolete: true created_by: Marcus creation_date: 2014-02-13T01:41:08Z [Typedef] id: inheres_in name: inheres_in xref: RO:0000052 property_value: usage "Used in FYPO as described in PATO best practices; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps)." xsd:string [Typedef] id: inheres_in_part_of name: inheres in part of xref: RO:0002314 property_value: usage "Used in FYPO as described in MP/HP logical definition best practices for processes, and in an analogous manner for cell/cell part structure; identifies an entity that displays a quality in an entity-quality logical definition. Used only in logical definitions (aka xps)." xsd:string [Typedef] id: inversely_associated_with name: inversely_associated_with namespace: quality def: "q1 inversely_associated_with q2 iff q1 is dependent on q2, and the magnitude of q1 decreases if the magnitude of q2 is increased, or the magnitude of q1 increases if the magnitude of q2 is decreased. The relationship is not necessarily linear." [PATOC:cjm, Wikipedia:Association_(statistics)] comment: Association is weaker than correlation or proportionality. These relations may be later added to PATO. property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl domain: PATO:0000001 ! quality range: PATO:0000001 ! quality created_by: cjm creation_date: 2009-08-26T02:50:24Z [Typedef] id: is_conjugate_acid_of name: is conjugate acid of namespace: chebi_ontology is_cyclic: true [Typedef] id: is_conjugate_base_of name: is conjugate base of namespace: chebi_ontology is_cyclic: true [Typedef] id: is_enantiomer_of name: is enantiomer of namespace: chebi_ontology is_cyclic: true [Typedef] id: is_magnitude_of name: is_magnitude_of namespace: pato.ontology [Typedef] id: is_measurement_of name: is_measurement_of namespace: pato.ontology [Typedef] id: is_opposite_of name: is opposite_of namespace: quality xref: RO:0002604 is_metadata_tag: true is_class_level: true [Typedef] id: is_substituent_group_from name: is substituent group from namespace: chebi_ontology [Typedef] id: is_tautomer_of name: is tautomer of namespace: chebi_ontology is_cyclic: true is_transitive: true [Typedef] id: is_unit_of name: is_unit_of namespace: pato.ontology [Typedef] id: located_in name: located in xref: RO:0001025 property_value: usage "Used in FYPO to indicate where a physical quality phenotype is observed." xsd:string [Typedef] id: member_of name: member_of namespace: sequence comment: A subtype of part_of. Inverse is collection_of. Winston, M, Chaffin, R, Herrmann: A taxonomy of part-whole relations. Cognitive Science 1987, 11:417-444. subset: SOFA property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl is_transitive: true is_a: part_of ! part_of [Typedef] id: negatively_regulates name: negatively regulates namespace: external xref: RO:0002212 property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl is_a: regulates ! regulates [Typedef] id: never_in_taxon name: never_in_taxon namespace: external xref: RO:0002161 expand_assertion_to: "Class: EquivalentTo: ?X and (RO_0002162 some ?Y)" [] expand_assertion_to: "Class: ?X DisjointWith: RO_0002162 some ?Y" [] is_metadata_tag: true is_class_level: true [Typedef] id: non_functional_homolog_of name: non_functional_homolog_of namespace: sequence def: "A relationship between a pseudogenic feature and its functional ancestor." [SO:ke] subset: SOFA property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl [Typedef] id: occurs_at name: occurs_at xref: GOREL:0000501 property_value: usage "This relation is not constrained with respect to whether the place where an event occurs completely surrounds, or is adjacent to, the location indicated. Example: chromatin silencing at centromere unfolds_around centromere : Repression of transcription of centromeric DNA by the formation of heterochromatin. Used in FYPO to identify a position where a phenotype is observed or relevant, usually a DNA or RNA sequence feature specified by a SO ID." xsd:string [Typedef] id: occurs_in name: occurs in xref: BFO:0000066 property_value: usage "Used in FYPO to identify a location, usually a cellular component or cell type, within which a phenotype is observed or relevant." xsd:string [Typedef] id: output_of name: output_of synonym: "formation results from" EXACT [PomBase:mah] xref: RO:0002353 property_value: usage "Inverse of has_output. Relation between a structure and a process that forms it, or between one process and a preceding process; A output_of B used where B has_output A isn't always true. Implies that process B is the only way to get output. Used in FYPO where one phenotype (c) always results when another phenotype (p) is present. Phenotype (p) may have other consequences in addition to phenotype (c)." xsd:string [Typedef] id: overlaps name: overlaps namespace: sequence def: "X overlaps Y iff there exists some Z such that Z contained_by X and Z contained_by Y." [PMID:20226267] comment: Example: coding_exon overlaps CDS. property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl created_by: kareneilbeck creation_date: 2010-10-14T01:33:15Z [Typedef] id: part_of name: part_of namespace: sequence def: "X part_of Y if X is a subregion of Y." [http://precedings.nature.com/documents/3495/version/1] comment: Example: amino_acid part_of polypeptide. subset: SOFA xref: BFO:0000050 property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl property_value: usage "Used in FYPO to identify phenotypes that are always observed in the context of another, usually larger-scale, phenotype." xsd:string is_transitive: true [Typedef] id: participates_in name: participates_in namespace: external xref: RO:0000056 [Typedef] id: positively_regulates name: positively regulates namespace: external xref: RO:0002213 property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl is_a: regulates ! regulates [Typedef] id: preceded_by name: preceded_by xref: BFO:0000062 property_value: usage "Used in FYPO when a phenotype is observed after another event, usually a GO biological process, has ended, and where there isn't a suitable process to use with a during relation." xsd:string [Typedef] id: precedes name: precedes xref: BFO:0000063 property_value: usage "Used in FYPO when a phenotype is observed before another event, usually a GO biological process, begins, and where there isn't a suitable process to use with a during relation." xsd:string [Typedef] id: qualifier name: qualifier property_value: usage "Used in FYPO as described in PATO best practices; placeholder relation to indicate normality/abnormality." xsd:string [Typedef] id: realized_by name: realized_by namespace: quality [Typedef] id: reciprocal_of name: reciprocal_of namespace: quality def: "q1 reciprocal_of q2 if and only if : q1 and q2 are relational qualities and a phenotype e q1 e2 mutually implies a phenotype e2 q2 e." [PATOC:CJM] comment: There are frequently two ways to state the same thing: we can say 'spermatocyte lacks asters' or 'asters absent from spermatocyte'. In this case the quality is 'lacking all parts of type' - it is a (relational) quality of the spermatocyte, and it is with respect to instances of 'aster'. One of the popular requirements of PATO is that it continue to support 'absent', so we need to relate statements which use this quality to the 'lacking all parts of type' quality. property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl [Typedef] id: regulates name: regulates namespace: external xref: RO:0002211 property_value: IAO:0000412 http://purl.obolibrary.org/obo/go.owl is_transitive: true [Typedef] id: similar_in_magnitude_relative_to name: similar_in_magnitude_relative_to namespace: quality def: "q1 similar_in_magnitude_relative_to q2 if and only if magnitude(q1) =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale." [PATOC:CJM] property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl domain: PATO:0000001 ! quality range: PATO:0000001 ! quality [Typedef] id: singly_occurring_form_of name: singly_occurring_form_of namespace: quality comment: PATO divides qualities between normal (monadic, singly-occurring) qualities and relational qualities. Relational qualities stand in the 'towards' relation with respect to some additional entity. For example, The sensitivity of an eye towards red light. In some cases we want to represent a quality such as 'protruding' in both monadic and relational branches. We use this relation to link them. synonym: "monadic_form_of" EXACT [] [Typedef] id: towards name: towards namespace: quality comment: Relation binding a relational quality or disposition to the relevant type of entity. xref: RO:0002503 property_value: IAO:0000412 http://purl.obolibrary.org/obo/pato.owl property_value: usage "Relation binding a relational quality or disposition to the relevant type of entity. Used in FYPO as described in PATO best practices; identifies abolished GO processes; identifies substances affected by phenotypes." xsd:string [Typedef] id: transcribed_from name: transcribed_from namespace: sequence def: "X is transcribed_from Y if X is synthesized from template Y." [http://precedings.nature.com/documents/3495/version/1] comment: Example: primary_transcript transcribed_from gene. property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl created_by: kareneilbeck creation_date: 2009-08-19T12:05:39Z [Typedef] id: transcribed_to name: transcribed_to namespace: sequence def: "Inverse of transcribed_from." [http://precedings.nature.com/documents/3495/version/1] comment: Example: gene transcribed_to primary_transcript. property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl created_by: kareneilbeck creation_date: 2009-08-19T12:08:24Z [Typedef] id: variant_of name: variant_of namespace: sequence def: "A' is a variant (mutation) of A = definition every instance of A' is either an immediate mutation of some instance of A, or there is a chain of immediate mutation processes linking A' to some instance of A." [SO:immuno_workshop] comment: Added to SO during the immunology workshop, June 2007. This relationship was approved by Barry Smith. property_value: IAO:0000412 http://purl.obolibrary.org/obo/so-xp.obo.owl