63
43
39
http://www.co-ode.org/ontologies/ont.owl#Consensus_Based_Assessment
http://www.co-ode.org/ontologies/ont.owl#Consensus_Based_Assessment SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Global_Alignment
Global alignment is a computational approach to sequence alignment.
Mostly used to align every residue in every sequence where the sequences in the query set are of similar and equal size.
Global_Alignmnet
'Global alignment is a computational approach to sequence alignment.
Mostly used to align every residue in every sequence where the sequences in the query set are of similar and equal size.' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#GARLI
Garli
'Garli' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'Garli' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
http://www.co-ode.org/ontologies/ont.owl#Word_Method/K-Tuple_Method
Word_Method/k_tuple_Method
'Word_Method/k_tuple_Method' SubClassOf 'Pairwise_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Codon_Based_Model
Codon_Based_Model
'Codon_Based_Model' SubClassOf 'DNA_Model'
http://www.co-ode.org/ontologies/ont.owl#Empirical_Substitution_Model
Empirical_Substitution_Models
'Empirical_Substitution_Models' SubClassOf 'Amino_Acid_Model'
http://www.co-ode.org/ontologies/ont.owl#Dot_Matrix_Method
Dot_Metrix_Method
'Dot_Metrix_Method' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Sequence_Alignment
Sequence_Alignmnet
'Sequence_Alignmnet' SubClassOf 'Method'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#HKY
HKY
'HKY' SubClassOf 'Nucleotide_Substitution_Model'
'HKY' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum_Likelihood
Maximum_Likelihood
'Maximum_Likelihood' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'PAUP'
'Maximum_Likelihood' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'PHYLIP'
'Maximum_Likelihood' SubClassOf 'Character_Based'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#SYM
SYM
'SYM' SubClassOf 'Nucleotide_Substitution_Model'
'SYM' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.co-ode.org/ontologies/ont.owl#Resampling
Resampling
'Resampling' SubClassOf http://www.co-ode.org/ontologies/ont.owl#Assessment_of_Uncertainty
'Resampling' SubClassOf http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Distance-Wagner
Distance_Wangner
'Distance_Wangner' SubClassOf 'Distance_Based'
'Distance_Wangner' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance-Based
http://www.co-ode.org/ontologies/ont.owl#Optimality_Criterion
Optimaly
'Optimaly' SubClassOf 'Tree Estimation'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#k80
K80
'K80' SubClassOf 'Nucleotide_Substitution_Model'
'K80' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#MOLPHY
Molphy
'Molphy' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'Molphy' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
http://www.co-ode.org/ontologies/ont.owl#PAUP*
PAUP
'PAUP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Distance_Based'
'PAUP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Parsimony'
'PAUP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'PAUP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance-Based
'PAUP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
'PAUP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
http://www.co-ode.org/ontologies/ont.owl#SSAP
SSAP
'SSAP' SubClassOf 'Structure_Alignment'
'SSAP' SubClassOf http://www.co-ode.org/ontologies/ont.owl#Structural-Alignment
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum_Parsimony
Maximum_Parsimony
'Maximum_Parsimony' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'Poy'
'Maximum_Parsimony' SubClassOf 'Character_Based'
http://www.co-ode.org/ontologies/ont.owl#Structural_Alignment
Structure_Alignment
'Structure_Alignment' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Cross_Validation
Cross_Validation
'Cross_Validation' SubClassOf 'Resampling'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance_Based
Distance_Based
'Distance_Based' SubClassOf 'Optimaly'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#F81
F81
'F81' SubClassOf 'Nucleotide_Substitution_Model'
'F81' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.co-ode.org/ontologies/ont.owl#Local_Alignment
Local_Alignmnet
'Local_Alignmnet' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Assessment_of_Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Assessment_of_Uncertainty SubClassOf 'Tree Estimation'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide_Substitution_Model
Nucleotide_Substitution_Model
'Nucleotide_Substitution_Model' SubClassOf 'DNA_Model'
'Nucleotide_Substitution_Model' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in only 'Maximum_Likelihood'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#NINJA
Ninja
'Ninja' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Neighbor_Joining'
'Ninja' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Pairwise_Alignment'
'Ninja' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.co-ode.org/ontologies/ont.owl#Pairwise-Alignment
'Ninja' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Neighbor-Joining
http://www.co-ode.org/ontologies/ont.owl#Dynamic_Programming
Dynamic_Programming
'Dynamic_Programming' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Iterative_Method
Iterative_Method
'Iterative_Method' SubClassOf 'Multiple_Sequence_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Protein_Structure_and_Correlated_Change
Protein_Structure_and_Correlated_Change
'Protein_Structure_and_Correlated_Change' SubClassOf 'Model_of_Protein_Evolution'
http://www.co-ode.org/ontologies/ont.owl#Posterior_Probability
http://www.co-ode.org/ontologies/ont.owl#Posterior_Probability SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Combinatorial_Extension
Combinatorial_Extension
'Combinatorial_Extension' SubClassOf 'Structure_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Pairwise_Alignment
Pairwise_Alignment
'Pairwise_Alignment' SubClassOf 'Sequence_Alignmnet'
'Pairwise_Alignment' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'Ninja'
http://www.co-ode.org/ontologies/ont.owl#FastTree
Fast_Tree
'Fast_Tree' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'Fast_Tree' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
http://www.co-ode.org/ontologies/ont.owl#Hidden_Markov_Model
Hidden_Markov_Model
'Hidden_Markov_Model' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#DALI
DALI
'DALI' SubClassOf 'Structure_Alignment'
'DALI' SubClassOf http://www.co-ode.org/ontologies/ont.owl#Structural-Alignment
http://www.co-ode.org/ontologies/ont.owl#Bayesian_Inference
Bayesian_Interence
'Bayesian_Interence' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'MrBayes'
'Bayesian_Interence' SubClassOf 'Character_Based'
http://www.co-ode.org/ontologies/ont.owl#Tree
http://www.co-ode.org/ontologies/ont.owl#Tree SubClassOf http://www.co-ode.org/ontologies/ont.owl#has_substitution_model some 'Nucleotide_Substitution_Model'
http://www.co-ode.org/ontologies/ont.owl#Tree SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_inferred_by some 'Maximum_Likelihood'
http://www.co-ode.org/ontologies/ont.owl#Tree SubClassOf http://www.co-ode.org/ontologies/ont.owl#has_substitution_model some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.co-ode.org/ontologies/ont.owl#Tree SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_inferred_by some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#GTR
GTR
'GTR' SubClassOf 'Nucleotide_Substitution_Model'
'GTR' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#POY
Poy
'Poy' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Parsimony'
'Poy' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#DNA_Model
DNA_Model
'DNA_Model' SubClassOf 'Model'
http://www.co-ode.org/ontologies/ont.owl#Edge
http://www.co-ode.org/ontologies/ont.owl#Edge SubClassOf http://www.co-ode.org/ontologies/ont.owl#has_substitution_model some 'Nucleotide_Substitution_Model'
http://www.co-ode.org/ontologies/ont.owl#Edge SubClassOf http://www.co-ode.org/ontologies/ont.owl#has_substitution_model some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#RAxML
Raxml
'Raxml' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'Raxml' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Parsimony'
'Raxml' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
'Raxml' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Model_of_Protein_Evolution
Model_of_Protein_Evolution
'Model_of_Protein_Evolution' SubClassOf 'Model'
http://www.co-ode.org/ontologies/ont.owl#DAMBE
DAMBE
'DAMBE' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Parsimony'
'DAMBE' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'DAMBE' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Distance_Based'
'DAMBE' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
'DAMBE' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
'DAMBE' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance-Based
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Tree_Estimation
Tree Estimation
'Tree Estimation' SubClassOf 'Method'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Amino_Acid_Model
Amino_Acid_Model
'Amino_Acid_Model' SubClassOf 'Model_of_Protein_Evolution'
http://www.co-ode.org/ontologies/ont.owl#Motif_Finding
Motif_Finding
'Motif_Finding' SubClassOf 'Multiple_Sequence_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#MEGA
Mega
'Mega' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Neighbor_Joining'
'Mega' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'Mega' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Parsimony'
'Mega' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
'Mega' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
'Mega' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Neighbor-Joining
http://www.co-ode.org/ontologies/ont.owl#MrBayes
MrBayes
'MrBayes' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Bayesian_Interence'
'MrBayes' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.co-ode.org/ontologies/ont.owl#Bayesian-Inference
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Tree_Puzzle
Tree_Puzzle
'Tree_Puzzle' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Likelihood'
'Tree_Puzzle' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#UPGMA
UPGMA
'UPGMA' SubClassOf 'Distance_Based'
'UPGMA' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance-Based
http://www.co-ode.org/ontologies/ont.owl#Progressive_Method
Progressive_Method
'Progressive_Method' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Traversing-Tree-Space
Traversing_Tree_Space
'Traversing_Tree_Space' SubClassOf 'Tree Estimation'
'Traversing_Tree_Space' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Tree-Estimation
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Character_Based
Character_Based
'Character_Based' SubClassOf 'Optimaly'
http://www.co-ode.org/ontologies/ont.owl#JC
JC
'JC' SubClassOf 'Nucleotide_Substitution_Model'
'JC' SubClassOf http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
http://www.co-ode.org/ontologies/ont.owl#Information_Criterion
http://www.co-ode.org/ontologies/ont.owl#Information_Criterion SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Decay_Assessment
http://www.co-ode.org/ontologies/ont.owl#Decay_Assessment SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Multiple_Sequence_Alignment
Multiple_Sequence_Alignment
'Multiple_Sequence_Alignment' SubClassOf 'Structure_Alignment'
http://www.co-ode.org/ontologies/ont.owl#NONA
NONA
'NONA' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some 'Maximum_Parsimony'
'NONA' SubClassOf http://www.co-ode.org/ontologies/ont.owl#uses some http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
http://www.co-ode.org/ontologies/ont.owl#Poisson_Model
Poisson_Model
'Poisson_Model' SubClassOf 'Amino_Acid_Model'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Neighbor_Joining
Neighbor_Joining
'Neighbor_Joining' SubClassOf 'Distance_Based'
http://www.co-ode.org/ontologies/ont.owl#Permutation_Test
Permutation_Test
'Permutation_Test' SubClassOf 'Resampling'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Parsimony
Maximum_Parsimony
'Maximum_Parsimony' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'Poy'
'Maximum_Parsimony' SubClassOf 'Character_Based'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Amino-Acid-Model
Amino_Acid_Model
'Amino_Acid_Model' SubClassOf 'Model_of_Protein_Evolution'
http://www.co-ode.org/ontologies/ont.owl#Multiple-Sequence-Alignment
Multiple_Sequence_Alignment
'Multiple_Sequence_Alignment' SubClassOf 'Structure_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum-Likelihood
Maximum_Likelihood
'Maximum_Likelihood' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'PAUP'
'Maximum_Likelihood' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'PHYLIP'
'Maximum_Likelihood' SubClassOf 'Character_Based'
http://www.co-ode.org/ontologies/ont.owl#Information-Criterion
http://www.co-ode.org/ontologies/ont.owl#Information-Criterion SubClassOf http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Posterior-Probability
http://www.co-ode.org/ontologies/ont.owl#Posterior-Probability SubClassOf http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Consensus-Based-Assessment
http://www.co-ode.org/ontologies/ont.owl#Consensus-Based-Assessment SubClassOf http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Character-Based
Character_Based
'Character_Based' SubClassOf 'Optimaly'
http://www.co-ode.org/ontologies/ont.owl#Hidden-Markov-Model
Hidden_Markov_Model
'Hidden_Markov_Model' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Cross-Validation
Cross_Validation
'Cross_Validation' SubClassOf 'Resampling'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Neighbor-Joining
Neighbor_Joining
'Neighbor_Joining' SubClassOf 'Distance_Based'
http://www.co-ode.org/ontologies/ont.owl#Optimality-Criterion
Optimaly
'Optimaly' SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Decay-Assessment
http://www.co-ode.org/ontologies/ont.owl#Decay-Assessment SubClassOf http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Assessment-of-Uncertainty SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Poisson-Model
Poisson_Model
'Poisson_Model' SubClassOf 'Amino_Acid_Model'
http://www.co-ode.org/ontologies/ont.owl#Empirical-Substitution-Model
Empirical_Substitution_Models
'Empirical_Substitution_Models' SubClassOf 'Amino_Acid_Model'
http://www.co-ode.org/ontologies/ont.owl#Dot-Matrix-Method
Dot_Metrix_Method
'Dot_Metrix_Method' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#WAG
http://www.co-ode.org/ontologies/ont.owl#WAG SubClassOf 'Empirical_Substitution_Models'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Tree-Estimation
Tree Estimation
'Tree Estimation' SubClassOf 'Method'
http://www.co-ode.org/ontologies/ont.owl#F81+P+1
http://www.co-ode.org/ontologies/ont.owl#F81+P+1 SubClassOf 'F81'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide-Substitution-Model
Nucleotide_Substitution_Model
'Nucleotide_Substitution_Model' SubClassOf 'DNA_Model'
'Nucleotide_Substitution_Model' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in only 'Maximum_Likelihood'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Codon-Based-Model
Codon_Based_Model
'Codon_Based_Model' SubClassOf 'DNA_Model'
http://www.co-ode.org/ontologies/ont.owl#Permutation-Test
Permutation_Test
'Permutation_Test' SubClassOf 'Resampling'
http://www.co-ode.org/ontologies/ont.owl#Dynamic-Programming
Dynamic_Programming
'Dynamic_Programming' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#F81+P
http://www.co-ode.org/ontologies/ont.owl#F81+P SubClassOf 'F81'
http://www.co-ode.org/ontologies/ont.owl#Combinatorial-Extension
Combinatorial_Extension
'Combinatorial_Extension' SubClassOf 'Structure_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Progressive-Method
Progressive_Method
'Progressive_Method' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Motif-Finding
Motif_Finding
'Motif_Finding' SubClassOf 'Multiple_Sequence_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#DNA-Model
DNA_Model
'DNA_Model' SubClassOf 'Model'
http://www.co-ode.org/ontologies/ont.owl#PAM
http://www.co-ode.org/ontologies/ont.owl#PAM SubClassOf 'Empirical_Substitution_Models'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Protein-Structure-and-Correlated-Change
Protein_Structure_and_Correlated_Change
'Protein_Structure_and_Correlated_Change' SubClassOf 'Model_of_Protein_Evolution'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance-Based
Distance_Based
'Distance_Based' SubClassOf 'Optimaly'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Model-of-Protein-Evolution
Model_of_Protein_Evolution
'Model_of_Protein_Evolution' SubClassOf 'Model'
http://www.co-ode.org/ontologies/ont.owl#Global-Alignment
Global alignment is a computational approach to sequence alignment.
Mostly used to align every residue in every sequence where the sequences in the query set are of similar and equal size.
Global_Alignmnet
'Global_Alignmnet' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Iterative-Method
Iterative_Method
'Iterative_Method' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Pairwise-Alignment
Pairwise_Alignment
'Pairwise_Alignment' SubClassOf 'Sequence_Alignmnet'
'Pairwise_Alignment' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'Ninja'
http://www.co-ode.org/ontologies/ont.owl#Local-Alignment
Local_Alignmnet
'Local_Alignmnet' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Word-Method/K-Tuple-Method
Word_Method/k_tuple_Method
'Word_Method/k_tuple_Method' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#F81+1
http://www.co-ode.org/ontologies/ont.owl#F81+1 SubClassOf 'F81'
http://www.co-ode.org/ontologies/ont.owl#Bayesian-Inference
Bayesian_Interence
'Bayesian_Interence' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'MrBayes'
'Bayesian_Interence' SubClassOf 'Character_Based'
http://www.co-ode.org/ontologies/ont.owl#Sequence-Alignment
Sequence_Alignmnet
'Sequence_Alignmnet' SubClassOf 'Method'
http://www.co-ode.org/ontologies/ont.owl#Structural-Alignment
Structure_Alignment
'Structure_Alignment' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#JTT
http://www.co-ode.org/ontologies/ont.owl#JTT SubClassOf 'Empirical_Substitution_Models'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Parameter
Parameter
http://www.co-ode.org/ontologies/ont.owl#Consensus_Based_Assessment
http://www.co-ode.org/ontologies/ont.owl#Consensus_Based_Assessment SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Global_Alignment
Global alignment is a computational approach to sequence alignment.
Mostly used to align every residue in every sequence where the sequences in the query set are of similar and equal size.
Global_Alignmnet
'Global alignment is a computational approach to sequence alignment.
Mostly used to align every residue in every sequence where the sequences in the query set are of similar and equal size.' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Word_Method/K-Tuple_Method
Word_Method/k_tuple_Method
'Word_Method/k_tuple_Method' SubClassOf 'Pairwise_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Codon_Based_Model
Codon_Based_Model
'Codon_Based_Model' SubClassOf 'DNA_Model'
http://www.co-ode.org/ontologies/ont.owl#Empirical_Substitution_Model
Empirical_Substitution_Models
'Empirical_Substitution_Models' SubClassOf 'Amino_Acid_Model'
http://www.co-ode.org/ontologies/ont.owl#Dot_Matrix_Method
Dot_Metrix_Method
'Dot_Metrix_Method' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Sequence_Alignment
Sequence_Alignmnet
'Sequence_Alignmnet' SubClassOf 'Method'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum_Likelihood
Maximum_Likelihood
'Maximum_Likelihood' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'PAUP'
'Maximum_Likelihood' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'PHYLIP'
'Maximum_Likelihood' SubClassOf 'Character_Based'
http://www.co-ode.org/ontologies/ont.owl#Optimality_Criterion
Optimaly
'Optimaly' SubClassOf 'Tree Estimation'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Maximum_Parsimony
Maximum_Parsimony
'Maximum_Parsimony' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'Poy'
'Maximum_Parsimony' SubClassOf 'Character_Based'
http://www.co-ode.org/ontologies/ont.owl#Structural_Alignment
Structure_Alignment
'Structure_Alignment' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Cross_Validation
Cross_Validation
'Cross_Validation' SubClassOf 'Resampling'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Distance_Based
Distance_Based
'Distance_Based' SubClassOf 'Optimaly'
http://www.co-ode.org/ontologies/ont.owl#Local_Alignment
Local_Alignmnet
'Local_Alignmnet' SubClassOf 'Sequence_Alignmnet'
http://www.co-ode.org/ontologies/ont.owl#Assessment_of_Uncertainty
http://www.co-ode.org/ontologies/ont.owl#Assessment_of_Uncertainty SubClassOf 'Tree Estimation'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Nucleotide_Substitution_Model
Nucleotide_Substitution_Model
'Nucleotide_Substitution_Model' SubClassOf 'DNA_Model'
'Nucleotide_Substitution_Model' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in only 'Maximum_Likelihood'
http://www.co-ode.org/ontologies/ont.owl#Dynamic_Programming
Dynamic_Programming
'Dynamic_Programming' SubClassOf 'Pairwise_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Iterative_Method
Iterative_Method
'Iterative_Method' SubClassOf 'Multiple_Sequence_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Protein_Structure_and_Correlated_Change
Protein_Structure_and_Correlated_Change
'Protein_Structure_and_Correlated_Change' SubClassOf 'Model_of_Protein_Evolution'
http://www.co-ode.org/ontologies/ont.owl#Posterior_Probability
http://www.co-ode.org/ontologies/ont.owl#Posterior_Probability SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Combinatorial_Extension
Combinatorial_Extension
'Combinatorial_Extension' SubClassOf 'Structure_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Pairwise_Alignment
Pairwise_Alignment
'Pairwise_Alignment' SubClassOf 'Sequence_Alignmnet'
'Pairwise_Alignment' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'Ninja'
http://www.co-ode.org/ontologies/ont.owl#Permutation_Tests
Permutation_Tests
http://www.co-ode.org/ontologies/ont.owl#Hidden_Markov_Model
Hidden_Markov_Model
'Hidden_Markov_Model' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Bayesian_Inference
Bayesian_Interence
'Bayesian_Interence' SubClassOf http://www.co-ode.org/ontologies/ont.owl#is_used_in some 'MrBayes'
'Bayesian_Interence' SubClassOf 'Character_Based'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#DNA_Model
DNA_Model
'DNA_Model' SubClassOf 'Model'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Model_of_Protein_Evolution
Model_of_Protein_Evolution
'Model_of_Protein_Evolution' SubClassOf 'Model'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Tree_Estimation
Tree Estimation
'Tree Estimation' SubClassOf 'Method'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Amino_Acid_Model
Amino_Acid_Model
'Amino_Acid_Model' SubClassOf 'Model_of_Protein_Evolution'
http://www.co-ode.org/ontologies/ont.owl#Motif_Finding
Motif_Finding
'Motif_Finding' SubClassOf 'Multiple_Sequence_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Progressive_Method
Progressive_Method
'Progressive_Method' SubClassOf 'Multiple_Sequence_Alignment'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Character_Based
Character_Based
'Character_Based' SubClassOf 'Optimaly'
http://www.co-ode.org/ontologies/ont.owl#Information_Criterion
http://www.co-ode.org/ontologies/ont.owl#Information_Criterion SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Decay_Assessment
http://www.co-ode.org/ontologies/ont.owl#Decay_Assessment SubClassOf 'Tree Estimation'
http://www.co-ode.org/ontologies/ont.owl#Multiple_Sequence_Alignment
Multiple_Sequence_Alignment
'Multiple_Sequence_Alignment' SubClassOf 'Structure_Alignment'
http://www.co-ode.org/ontologies/ont.owl#Poisson_Model
Poisson_Model
'Poisson_Model' SubClassOf 'Amino_Acid_Model'
http://www.semanticweb.org/ontologies/2011/7/Ontology1314368515010.owl#Neighbor_Joining
Neighbor_Joining
'Neighbor_Joining' SubClassOf 'Distance_Based'
http://www.co-ode.org/ontologies/ont.owl#Permutation_Test
Permutation_Test
'Permutation_Test' SubClassOf 'Resampling'