format-version: 1.2 date: 20:04:2016 17:43 saved-by: cooperl subsetdef: Allium_porrum "Terms_used_for_leek" subsetdef: Cucurbita "Terms_used_for_squash" subsetdef: Glycine_max "Terms_used_for_soybean" subsetdef: Hordeum_vulgare "Term_used_for_barley" subsetdef: Saccharum "Terms_used_for_sugarcane" subsetdef: Solanaceae_spp "Terms_used_for_the_Solanaceae" subsetdef: Triticum_aestivum "Terms_used_for_wheat" subsetdef: Zea_mays "Terms_used_for_maize_or_corn" default-namespace: plant_trait_ontology import: http://purl.obolibrary.org/obo/po.owl import: http://purl.obolibrary.org/obo/to/imports/chebi_import.owl import: http://purl.obolibrary.org/obo/to/imports/eo_import.owl import: http://purl.obolibrary.org/obo/to/imports/go_import.owl import: http://purl.obolibrary.org/obo/to/imports/pato_import.owl import: http://purl.obolibrary.org/obo/to/imports/ro_import.owl ontology: to owl-axioms: Prefix(owl:=)\nPrefix(rdf:=)\nPrefix(xml:=)\nPrefix(xsd:=)\nPrefix(rdfs:=)\n\n\nOntology(\nDeclaration(AnnotationProperty())\n\n\nAnnotationAssertion(rdfs:comment \"\")\nAnnotationAssertion( \"\")\n) [Term] id: TO:0000001 name: carbon sensitivity def: "Sensitivity to the carbon content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in various metabolic processes." [GR:pj] synonym: "carbon deficiency" RELATED [] synonym: "CBSN" RELATED [] is_a: TO:0000252 ! non-mineral nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27594 ! carbon atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000002 name: epigenetic trait def: "OBSOLETE. An epigenetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual but have arisen as a result of mechanisms regulating the expression of the genes rather than differences in the gene sequence." [GR:pj, ISBN:0198506732] is_obsolete: true [Term] id: TO:0000003 name: alkali soil sensitivity def: "Plant sensitivity to soils with alkali conditions (pH>7)." [ICIS:1202, IRRI:SES, TO:moorel] comment: Observed by general growth conditions in relation to standard resistant and susceptible checks. Since some soil problems are very heterogeneous in the field, several replications may be needed to obtain precise reading. Leaf is counted as discolored or dead if more than half of its area is discolored or dead. synonym: "alkali sensitivity" RELATED [] synonym: "AlkS" RELATED [] is_a: TO:0000481 ! alkali sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007062 ! basic pH soil environment intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000004 name: reversible male sterility def: "Trait of a plant in which the action of the cytotoxic gene used to introduce male sterility is suppressed by the application of a chemical to the plant. Reversion of the sterility allows the RMS parent to be self-fertilized, a step that overcomes the need to remove fertile sib plants prior to making the hybrid cross." [PMID:10645437] synonym: "RMS" RELATED [] is_a: TO:0000111 ! genetically engineered male sterility [Term] id: TO:0000006 name: calcium sensitivity def: "Sensitivity to the calcium content in the growth medium. Plays an important role in cell wall synthesis and enzyme activities." [GR:pj] synonym: "calcium deficiency" RELATED [] synonym: "CALSN" RELATED [] is_a: TO:0000251 ! secondary macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:22984 ! calcium atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000007 name: sulfur sensitivity def: "Response by the plant in terms of sensitivity to sulfur content in the growth medium. It is important for synthesis of some amino acid residues." [GR:pj] synonym: "SFSN" RELATED [] synonym: "sulfur deficiency" RELATED [] is_a: TO:0000251 ! secondary macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:26833 ! sulfur atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000008 name: potassium sensitivity def: "Sensitivity to the potassium ion content in the growth medium. It plays an important role in controlling water by osmosis and also in the metal ion homeostasis." [GR:pj] synonym: "KSN" RELATED [] synonym: "potassium deficiency" RELATED [] is_a: TO:0000248 ! primary macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:26216 ! potassium atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000009 name: genic male sterility-photoperiod sensitive def: "Male sterility affected by photoperiod." [GR:pj, IRRI:SES] synonym: "PGMS" RELATED [] synonym: "photoperiod sensitive genic male sterility" RELATED [] synonym: "PPDSNGMS" RELATED [] is_a: TO:0000199 ! genic male sterility [Term] id: TO:0000010 name: magnesium sensitivity def: "Sensitivity to the magnesium content in the growth medium. It is important for chlorophyll biosynthesis and metal ion homeostasis." [GR:pj] synonym: "magnesium deficiency" RELATED [] synonym: "MGSN" RELATED [] is_a: TO:0000251 ! secondary macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:25107 ! magnesium atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000011 name: nitrogen sensitivity def: "Sensitivity to the nitrogen content in the growth medium. It is important for protein synthesis, chlorophyll etc." [GR:pj] synonym: "NISN" RELATED [] synonym: "nitrogen deficiency" RELATED [] is_a: TO:0000248 ! primary macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:25555 ! nitrogen atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000012 name: hydrogen sensitivity def: "Sensitivity to the molecular hydrogen or hydrogen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, amino acids and peptides and plays a role in the energy metabolism, osmolarity, etc." [GR:pj] synonym: "hydrogen ion sensitivity" RELATED [] synonym: "molecular hydrogen sensitivity" RELATED [] is_a: TO:0000252 ! non-mineral nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:49637 ! hydrogen atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000013 name: resistance to disease by mycoplasma-like organism def: "An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a mycoplasma-like pathogen infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj, IRRI:SES] comment: The factors needed for successful test are the presence of sources and vectors, inoculation at the susceptible growth stage of the test plants and favorable environmental conditions. synonym: "MLO" RELATED [] synonym: "MLORS" RELATED [] is_a: TO:0000112 ! disease resistance is_a: TO:0000242 ! microbial damage resistance [Term] id: TO:0000014 name: panicle weight def: "Average weight of the panicle from the plants or tillers in a given study." [GR:pj] synonym: "PNWT" RELATED [] is_a: TO:0000583 ! infructescence weight [Term] id: TO:0000015 name: oxygen sensitivity def: "Sensitivity to the molecular oxygen or reactive oxygen ion content in the growth medium. It plays an important role in the synthesis of various inorganic and organic metabolites such as carbohydrates, lipids, aminoacids and peptides and plays a role in the energy metabolism." [GR:pj] synonym: "oxygen deficiency" RELATED [] is_a: TO:0000252 ! non-mineral nutrient sensitivity is_a: TO:0002657 ! oxidative stress intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:25805 ! oxygen atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000016 name: cobalt sensitivity def: "Sensitivity to the cobalt content in the growth medium." [GR:pj] synonym: "COSN" RELATED [] is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27638 ! cobalt atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000017 name: plant morphology trait def: "A plant trait (TO:0000387) which is a morphological quality of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575) contained therein." [GO:0005575, GR:pj, PO:0025131, TO:cooperl] comment: Includes traits of plant structures (PO:0009011) such as plant cell (PO:0009002), plant organ (PO:0009008), portion of plant tissue (PO:0009007), vascular system (PO:0000034), whole plant (PO:0000003) and seed (PO:0009010), as well as those of plant anatomical spaces (PO:0025117) and portions of plant substance (PO:0025161). synonym: "plant architecture trait" RELATED [] synonym: "plant structure trait" RELATED [] xref: TO_GIT:54 is_a: TO:0000387 ! plant trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025131 ! plant anatomical entity [Term] id: TO:0000018 name: boron sensitivity def: "Sensitivity to the boron content in the growth medium. It plays an important role in cell division." [GR:pj] synonym: "boron deficiency" RELATED [] synonym: "BOSN" RELATED [] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27560 ! boron atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000019 name: seedling height def: "Average height measurements of 10 seedlings, in centimeters from the base of the shoot to the tip of the tallest leaf blade." [IRRI:SES] synonym: "SH" RELATED [] is_a: TO:0000207 ! plant height [Term] id: TO:0000020 name: black streak dwarf virus resistance synonym: "BSDVRS" RELATED [] is_a: TO:0000148 ! viral disease resistance [Term] id: TO:0000021 name: copper sensitivity def: "Sensitivity to the copper ion content in the growth medium. Plays a role as cofactor in synthesis of some enzymes important in photosynthesis." [GR:pj] synonym: "CUSN" RELATED [] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:28694 ! copper atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000022 name: stink bug resistance def: "Causal agent: Oebalus pugnax." [GR:pj] synonym: "SBUGRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000023 name: fungal infection related grain discoloration def: "Causal agent: species of Sarocladium, Bipolaris, Alternaria, Gerlachia, Fusarium, Phoma, Curvularia, Trichoconiella and Psaudomonas etc. Symptoms: darkening of glumes of spikelets, brown color to black including rotten glumes caused by one or more pathogens. Intensity ranges from sporadic discoloration to discoloration of the whole glume. Severity of grain discoloration can be estimated by counting of grains with more than 25% of glume surface affected." [GR:pj, IRRI:SES] synonym: "Gd" RELATED [] synonym: "grain discoloration" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000024 name: ligule length def: "A ligule morphology trait (TO:0002748) which is a length of a ligule measured in millimeters from the base of the leaf collar to the tip of the ligule (PO:0020105)." [IRRI:SES, PO:0020105, POC:cooperl] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. synonym: "LgL" RELATED [] synonym: "LIGLG" RELATED [] xref: PATO:0000122 is_a: TO:0002748 ! ligule morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020105 ! ligule [Term] id: TO:0000025 name: molybdenum sensitivity def: "Important for nitrate fixation." [GR:pj] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:28685 ! molybdenum atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000026 name: aborted tri-nucleate stage def: "Abortion at tri-nucleate stage of microspore development." [GR:pj, IRRI:SES] comment: An example is CMS-boro in rice. synonym: "TNUABR" RELATED [] is_a: TO:0000218 ! pollen abortion type [Term] id: TO:0000027 name: culm number def: "Actual count of the total number of tillers after full heading, Specify if per plant, hill or area." [IRRI:SES] synonym: "CmN" RELATED [] is_a: TO:0000077 ! shoot system morphology trait [Term] id: TO:0000028 name: unfilled grain number def: "Number of unfilled florets in a grass inflorescence." [GR:pj] synonym: "UNFILGRNB" RELATED [] synonym: "unfilled florets per panicle" RELATED [] synonym: "unfilled grain" RELATED [] is_a: TO:0002759 ! grain number [Term] id: TO:0000029 name: chlorine sensitivity def: "Sensitivity to the chlorine content in the growth medium. Chloride helps regulate the correct pH (acid/alkaline) balance. This is a major electrolyte in the living cell besides sodium and potassium. It is available to the cell mainly in the form of NaCl and KCl salts." [GR:pj] synonym: "CHLORSN" RELATED [] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:23116 ! chlorine atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000030 name: sedge weed def: "A common sedge weed Cyperus iria (rice flatsedge), Cyperus difformis (Small flower umbrella sedge), Rice field bulrush Scirpus mucronatus, River bulrush Scirpus fluviatilis. Grows as a weed in the rice field. Can be distinguished from grass plant by the leaf shape, venation, stem cross-section and plant shape leaf shape." [GR:pj, ISBN:9712200299, web:http//www.ipm.ucdavis.edu/PMG/r682700999.html] is_a: TO:0000347 ! weed damage [Term] id: TO:0000031 name: silicon sensitivity is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27573 ! silicon atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000032 name: selenium sensitivity is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27568 ! selenium atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000033 name: iodine sensitivity is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:24859 ! iodine atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000034 name: chromium sensitivity def: "Sensitivity to the chromium content in the growth medium." [GR:pj] synonym: "CHRSN" RELATED [] is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:28073 ! chromium atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000035 name: incompatibility trait is_a: TO:0000392 ! sterility or fertility trait intersection_of: PATO:0000345 ! incompatible intersection_of: inheres_in PO:0009011 ! plant structure [Term] id: TO:0000036 name: hybrid incompatibility synonym: "HYBIC" RELATED [] is_a: TO:0000035 ! incompatibility trait is_a: TO:0000371 ! yield trait [Term] id: TO:0000037 name: male sterility extent def: "OBSOLETE. Determines the extent of male sterility of a male sterile line. Can be determined by either pollen sterility or spikelet fertility" [GR:pj, IRRI:SES] synonym: "degree of male sterility of male sterile lines" RELATED [] synonym: "male sterility measure" RELATED [] is_obsolete: true [Term] id: TO:0000038 name: fluorine sensitivity is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:24061 ! fluorine atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000039 name: yield component def: "OBSOLETE. Defines the components that determine the over all yield from a plant" [GR:pj] is_obsolete: true [Term] id: TO:0000040 name: panicle length def: "A panicle morphology trait (TO:0000847) which is the measurement in centimeters from panicle base to tip." [IRRI:SES] comment: Evaluated at growth stage:8 in rice. synonym: "PnL" RELATED [] synonym: "PNLG" RELATED [] is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000041 name: brown rice length def: "A grain length (TO:0000734) monitored after dehulling but before polishing. The grain should contain pericarp (PO:0009084)." [ICIS:1259, IRRI:SES, PO:0009084, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "BRWLG" RELATED [] synonym: "Len" RELATED [] xref: PATO:0000122 is_a: TO:0000734 ! grain length [Term] id: TO:0000042 name: f1-hybrid incompatibility synonym: "F1HYBIC" RELATED [] is_a: TO:0000036 ! hybrid incompatibility [Term] id: TO:0000043 name: root morphology trait def: "A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)." [GR:pj, PO:0025025, POC:cooperl] xref: TO_GIT:58 is_a: TO:0000738 ! plant axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000044 name: stigma exsertion def: "Trait is monitored by counting number of flowers or florets that have completed anthesis on a given day and showing exserted stigma. Trait expressed as percent stigma exsertion." [GR:pj, IRRI:SES] comment: Scale, (%), Stigma exsertion; 1- Above 70, Well exserted; 3- 41-70, Moderately well exserted; 5- 21-40, Just exserted; 7- 11-20, Partly exserted; 9- 0-10, Enclosed. Evaluated at growth stage:6 and 7 in rice. synonym: "STIEX" RELATED [] synonym: "stigma exsertion of male sterile lines" RELATED [] is_a: TO:0006012 ! carpel morphology trait [Term] id: TO:0000045 name: udbatta disease resistance def: "Causal agent: Balanasia oryzae-sativae (Ephelis oryzae). Symptoms: a white mycelial mat ties the panicle branches together so that they emerge as single, small, cylindrical rods." [GR:pj, IRRI:SES] synonym: "UDb" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000046 name: f2-generation sterility synonym: "F2GST" RELATED [] is_a: TO:0000036 ! hybrid incompatibility [Term] id: TO:0000047 name: sporophytic incompatibility is_a: TO:0000310 ! self-incompatibility [Term] id: TO:0000048 name: kernel smut disease resistance def: "Causal agent: Tilletia barclayana. Symptoms: infected grains show minute black pustules or streaks bursting through the glumes. In severe infection, the rupturing glumes produce short beak-like or spur-like outgrowths." [GR:pj, ICIS:1109] synonym: "KSm" RELATED [] synonym: "KSRS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000049 name: gametophytic incompatibility synonym: "GPHIC" RELATED [] is_a: TO:0000310 ! self-incompatibility [Term] id: TO:0000050 name: inflorescence branching alt_id: TO:0000263 def: "An inflorescence morphology trait (TO:0000373) which is the extent of branching. (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] comment: Branching usually determines the shape and compactness of the inflorescence synonym: "panicle branching" RELATED [] xref: TO_GIT:96 is_a: TO:0000373 ! inflorescence morphology trait is_a: TO:0000621 ! inflorescence development trait intersection_of: PATO:0000402 ! branched intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000051 name: stem strength def: "A stem morphology trait (TO:0000361) which is the strength of a stem (PO:0009047)." [GR:pj, ICIS:1014, IRRI:Rice_SES(1996), PO:0009047, TO:moorel] comment: Refer to strength (PATO:0001230): A quality inhering in a bearer by virtue of the bearer's power or force. synonym: "Cs" RELATED [] synonym: "culm strength" RELATED [] synonym: "CULMSTR" RELATED [] synonym: "STEMSTR" RELATED [] xref: PATO:0001230 is_a: TO:0000168 ! abiotic stress trait is_a: TO:0000361 ! stem morphology trait is_a: TO:0000597 ! quality trait intersection_of: PATO:0001230 ! strength intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0000052 name: primary branching of inflorescence def: "An inflorescence morphology trait (TO:0000373) which is the extent of primary branching that usually sets the tone for shape and compactness of the inflorescence (PO:0009049) (rice panicle)." [GR:pj, PO:0009049, TO:moorel] synonym: "PBR" RELATED [] synonym: "primary branching of panicle" RELATED [] is_a: TO:0000050 ! inflorescence branching [Term] id: TO:0000053 name: pollen sterility def: "Observed under a microscope at magnification 10x10 after staining with 1% iodine potassium iodide (IKI) solution. Samples for pollen are collected from anthers and fixed in 70% alcohol. Two to three anthers are extracted from each floret and pollen grains are squeezed out into the IKI solution drop. At least three fields are used to count the sterile pollen grains; unstained withered, unstained spherical and partially stained round and fertile, from stained round pollen grains. Percentage sterility is calculated as = (unstained withered+unstained spherical+partially stained) x 100/total number of pollen grains in the field including the fertile." [GR:pj, IRRI:SES] is_a: TO:0000437 ! male sterility [Term] id: TO:0000054 name: animal damage resistance def: "Response by the plant in terms of resistivity or sensitivity to the animals infesting them." [GR:pj] synonym: "pest resistance" RELATED [] is_a: TO:0000236 ! crop damage resistance [Term] id: TO:0000055 name: leaf lamina pubescence def: "A leaf lamina morphology trait (TO:0000829) which is the extent of pubescence (presence of hairs) on a leaf lamina (PO:0020039)." [IRRI:SES] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. synonym: "LBP" RELATED [] synonym: "leaf blade pubescence" RELATED [] synonym: "LFLHR" RELATED [] synonym: "LFLPUBES" RELATED [] xref: PATO:0001320 is_a: TO:0000829 ! leaf lamina morphology trait intersection_of: PATO:0000455 ! pubescent intersection_of: inheres_in PO:0020039 ! leaf lamina [Term] id: TO:0000056 name: stem color def: "A stem morphology trait (TO:0000361) which is the color of a stem (PO:0009047)." [GR:pj, PO:0009047, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0000057 name: grain moisture is_a: TO:0000228 ! moisture content related trait [Term] id: TO:0000058 name: herbicide sensitivity def: "A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant towards the applied herbicide." [GR:pj, TO:moorel] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. synonym: "herbicide tolerance" RELATED [] synonym: "weedicide tolerance" RELATED [] xref: EO:0007183 is_a: TO:0000482 ! chemical stress sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:24527 ! herbicide intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000059 name: node color def: "Color of the stem node." [GR:pj] synonym: "NDCL" RELATED [] is_a: TO:1000003 {is_inferred="true"} ! shoot axis node color intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020141 ! stem node relationship: inheres_in PO:0020141 {is_inferred="true"} ! stem node relationship: part_of TO:0000056 ! stem color [Term] id: TO:0000060 name: aborted uni-nucleate stage def: "Abortion at uni-nucleate stage of microspore development." [GR:pj, IRRI:SES] comment: An example is CMS-WA in rice. synonym: "UNUABR" RELATED [] is_a: TO:0000218 ! pollen abortion type [Term] id: TO:0000061 name: node shattering synonym: "brittle node" RELATED [] is_a: TO:0000051 ! stem strength intersection_of: PATO:0001662 ! fragility intersection_of: inheres_in PO:0020141 ! stem node [Term] id: TO:0000062 name: phenol reaction is_a: TO:0000489 ! carbohydrate composition related trait [Term] id: TO:0000063 name: mimic response synonym: "disease mimic response" RELATED [] synonym: "lesion mimic" RELATED [] synonym: "MIRP" RELATED [] is_a: TO:0000236 ! crop damage resistance [Term] id: TO:0000064 name: plant embryo morphology trait def: "A whole plant morphology trait (TO:0000398) which is a quality of a plant embryo (PO:0009009)." [PO:0009009, TO:moorel] xref: TO_GIT:140 is_a: TO:0000398 ! whole plant morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009009 ! plant embryo [Term] id: TO:0000065 name: root color def: "The color of the root." [GR:pj] synonym: "RTCL" RELATED [] is_a: TO:0000043 ! root morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000066 name: spot disease def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000067 name: genic male sterility-thermo sensitive def: "Temperature sensitive male sterility, affected by environment." [GR:pj, IRRI:SES] synonym: "TGMS" RELATED [] synonym: "thermo sensitive genic male sterility" RELATED [] is_a: TO:0000199 ! genic male sterility [Term] id: TO:0000068 name: lodging incidence def: "Measure of percentage of plants that lodged." [ICIS:1010, IRRI:SES] synonym: "Lg" RELATED [] synonym: "LOI" RELATED [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000069 name: variegated leaf synonym: "albino leaf striping" RELATED [] synonym: "leaf stripes" RELATED [] is_a: TO:0000326 ! leaf color intersection_of: PATO:0001533 ! multi-colored intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000070 name: variegated leaf necrosis def: "Variegated leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue." [GR:pj] comment: In maize this trait is observed for chlorotic tissue between veins or older leaves, causing holes and torn appearance. synonym: "ragged leaf" RELATED [] synonym: "VLFNEC" RELATED [] is_a: TO:0000069 ! variegated leaf is_a: TO:0000652 ! leaf necrosis [Term] id: TO:0000071 name: anthocyanin content def: "The anthocyanin content in a plant or plant part." [ISBN:198506732] comment: Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin. synonym: "ANTHCN" RELATED [] is_a: TO:0000290 ! flavonoid content is_a: TO:0000494 ! pigment content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:35218 ! anthocyanin cation [Term] id: TO:0000072 name: awn length def: "An awn morphology trait (TO:0002718) which is the length of awn (PO:0025349)." [ICIS:1063, IRRI:SES, PO:0025349, TO:moorel] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. synonym: "An" RELATED [] synonym: "awning" RELATED [] synonym: "AWNLG" RELATED [] xref: PATO:0000122 is_a: TO:0002718 ! awn morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025349 ! awn [Term] id: TO:0000073 name: manganese sensitivity def: "Sensitivity to the manganese content in the growth medium. It is important for activation of some enzymes and role in metal ion homeostasis." [GR:pj] synonym: "MNSN" RELATED [] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:18291 ! manganese atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000074 name: blast disease resistance def: "Causal agent: Magnaporthe grisea." [GR:pj] synonym: "blast disease resistance trait" EXACT [] synonym: "blast disease susceptibility" NARROW [] xref: TO_GIT:69 is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000075 name: light sensitivity def: "Response shown by the plant in terms of sensitivity to light stress (quality and quantity of light)." [GR:pj] is_a: TO:0000161 ! radiation response trait intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007196 ! light regimen intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000076 name: inflorescence feature def: "OBSOLETE. The instances define various distinguishing trait features associated with inflorescence and its instances." [GR:pj] is_obsolete: true [Term] id: TO:0000077 name: shoot system morphology trait def: "A collective plant organ structure morphology trait (TO:0000842) which is a quality of a shoot system (PO:0009006)." [GR:pj, PO:0009006, TO:cooperl] comment: Does not include traits of fruit, parts of fruit and adventitious roots which are borne on the shoot. xref: TO_GIT:57 is_a: TO:0000842 ! collective plant organ structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009006 ! shoot system created_by: jaiswalp [Term] id: TO:0000078 name: root dry weight def: "The average dry weight of the root determined in a study." [GR:jcl, GR:pj] synonym: "rdw" RELATED [] synonym: "rdw/t" RELATED [] synonym: "root dry weight per tiller" RELATED [] synonym: "RTDWT" RELATED [] synonym: "total root dry weight" RELATED [] is_a: TO:0000279 ! root weight relationship: part_of TO:0000352 ! plant dry weight [Term] id: TO:0000079 name: flower bract morphology trait def: "A bract morphology trait (TO:0000815) which is a quality of a flower bract (PO:0009034)." [GR:pj, PO:0009034, TO:cooperl, TO:moorel] xref: TO_GIT:390 is_a: TO:0000815 ! bract morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009034 ! flower bract [Term] id: TO:0000080 name: micronutrient sensitivity def: "Sensitivity response shown by the plant grown in either the excess or deficient amount of the micronutrient in the growth medium (soil)." [GR:pj] synonym: "micronutrient deficiency" RELATED [] is_a: TO:0000480 ! nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in PLANTCHEBIROLE:02 intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000081 name: deep root dry weight def: "The average dry weight of the root, (for the root part 30cm below the soil surface) determined per tiller in a green house study." [GR:jcl, GR:pj] synonym: "deep root dry weight per tiller" EXACT [] synonym: "deep root weight" EXACT [] synonym: "DRTDWT" EXACT [] synonym: "drw" EXACT [] synonym: "drw/t" EXACT [] is_a: TO:0000078 ! root dry weight [Term] id: TO:0000082 name: zigzag leafhopper resistance def: "Causal agent: Recilia dorsalis (Motschulsky)." [GR:pj] synonym: "ZLFHRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000083 name: penetrated root number def: "Its the total number of roots penetrating the hard pans of the soil or the number of roots penetrated through the wax-petrolatum layer measured at 50 days after sowing (DAS)." [GR:jcl, GR:pj] synonym: "npr" RELATED [] synonym: "number of penetrating roots" RELATED [] synonym: "PENRTNB" RELATED [] is_a: TO:0000084 ! root number [Term] id: TO:0000084 name: root number def: "A root system morphology trait (TO:0000985) which is the number of roots (PO:0009005) in a root system (PO:0025025)." [GR:jcl, GR:pj, PATO:0001555, TO:cooperl, TO_GIT:357] synonym: "RTNB" RELATED [] synonym: "tnr" RELATED [] is_a: TO:0000985 ! root system morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009005 ! root intersection_of: occurs_in PO:0025025 ! root system [Term] id: TO:0000085 name: leaf rolling def: "A leaf morphology trait (TO:0000748) which is the rolling of a leaf preceding the leaf drying stage." [GR:jcl, GR:pj, TO:moorel] comment: Leaf rolling is a feature observed in response to stresses like drought, water and temperature. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFRL" RELATED [] synonym: "wilting" RELATED [] is_a: TO:0000748 ! leaf morphology trait [Term] id: TO:0000086 name: sheath rot disease resistance def: "Causal agent: Sarocladium oryzae. Symptoms: oblong or irregular brown to grey lesions on the leaf sheath near panicle; sometimes coalescing to prevent emergence of panicle." [GR:pj, ICIS:1114, IRRI:SES] synonym: "ShR" RELATED [] synonym: "SHROTRS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000087 name: aroma def: "The aroma of the cooked/uncooked grains." [GR:pj, ICIS:1252, IRRI:SES] comment: It is often associated with the accumulation of the aromatic compound 2-acetyl-1-pyrroline. synonym: "AROMA" RELATED [] synonym: "odour" RELATED [] synonym: "scent" EXACT [] synonym: "Sct" RELATED [] is_a: TO:0000488 ! seed composition based quality trait is_a: TO:0002694 ! fruit flavor trait [Term] id: TO:0000088 name: rice yellow mottle virus resistance def: "Causal agent: rice yellow mottle virus (RYMV). Symptoms: stunting, reduced tillering, mottling and yellowish streaking of the leaves, delayed flowering or incomplete emergence of the panicle; in extreme cases, death of plants." [GR:pj, IRRI:SES] synonym: "RYMV" RELATED [] synonym: "RYMVRS" RELATED [] is_a: TO:0000148 ! viral disease resistance intersection_of: PATO:0001046 ! resistance to intersection_of: inheres_in EO:0007318 ! rice yellow mottle virus intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000089 name: panicle type def: "A panicle morphology trait (TO:0000847) which is the mode of branching, angle of primary branches, and spikelet density." [ICIS:1066, IRRI:SES, TO:moorel] synonym: "Panicle attitude of branches" RELATED [] synonym: "PnT" RELATED [] synonym: "PNTYPE" RELATED [] is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000090 name: penetrated root thickness def: "At 50 days after sowing (DAS), the thickness of roots penetrated through the wax-petrolatum layer is measured. Penetrated root thickness is measured on penetrated roots immediately below the wax layer." [GR:jcl, GR:pj] synonym: "PENRTTH" RELATED [] synonym: "prt" RELATED [] is_a: TO:0000306 ! root thickness [Term] id: TO:0000091 name: leafhopper def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000092 name: deep root to shoot ratio def: "The ratio of deep root length (for the roots found 30cm below the soil surface) and the shoot length determined in a study." [GR:pj] synonym: "deep root length to shoot length ratio" RELATED [] synonym: "deep root ratio" RELATED [] synonym: "deep root/shoot ratio" RELATED [] synonym: "dr/s" RELATED [] synonym: "DRTSHRO" RELATED [] is_a: TO:0000278 ! root to shoot ratio [Term] id: TO:0000093 name: root pulling force synonym: "rpf" RELATED [] synonym: "RTPF" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000094 name: basal root thickness def: "The thickness of the root present 2cm below the soil surface." [GR:jcl, GR:pj] synonym: "BARTTH" RELATED [] synonym: "brt" RELATED [] is_a: TO:0000306 ! root thickness intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0025002 ! basal root [Term] id: TO:0000095 name: osmotic response sensitivity def: "Sensitivity to the osmoticum in the growth medium." [GR:pj] synonym: "oa" RELATED [] synonym: "OSRPSN" RELATED [] is_a: TO:0000237 ! water stress trait intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in GO:0006970 ! response to osmotic stress [Term] id: TO:0000096 name: ratooning ability def: "Regeneration of the main stem and tillers after harvesting in a grass plant." [GR:jn, GR:pj] synonym: "RAAB" RELATED [] is_a: TO:0000250 ! vigor related trait is_a: TO:0000371 ! yield trait is_a: TO:0000654 ! shoot system growth and development trait [Term] id: TO:0000097 name: amylopectin content def: "Amount of amylopectin present in the plant or plant part." [ISBN:198506732] comment: It is a polysaccharide present in starch. Amylopectin is a polymer of alpha(1,4)-linked glucose units, as is amylose (see amylose). Unlike amylose, amylopectin contains branches of 2430 glucose units connected to the main chain by an alpha(1,6) linkage. synonym: "AMYPCTCN" RELATED [] is_a: TO:0000489 ! carbohydrate composition related trait is_a: TO:0000667 ! cooking or brewing quality is_a: TO:0006007 ! polysaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28057 ! amylopectin [Term] id: TO:0000098 name: glutinous endosperm def: "An endosperm morphology trait (TO:0000575) which is an opaque and hard endosperm (PO:0009089) with low or no amylose content (TO:0000196)." [GR:pj, PO:0009089, TO:moorel] comment: If the endosperm has high amount of amylose it is called as non-glutinous endosperm. This is also an endosperm quality trait (TO:0000587). synonym: "opaque endosperm" RELATED [] synonym: "waxy endosperm" RELATED [] xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality intersection_of: PATO:0001540 ! glutinous intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000099 name: sugary endosperm def: "An endosperm morphology trait (TO:0000575) which is a wrinkled and glassy endosperm (PO:0009089) when dry." [GR:pj, PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). synonym: "sugary kernel" RELATED [] xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000100 name: shrunken endosperm def: "An endosperm morphology trait (TO:0000575) which is a shrunken and opaque endosperm (PO:0009089)." [GR:pj, PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). Refers to shrunken PATO:0000585 A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ). synonym: "collapsed kernel" RELATED [] synonym: "transluscent kernel" RELATED [] xref: PATO:0000585 xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality intersection_of: PATO:0000585 ! hypotrophic intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000101 name: broad-leaved weed def: "A common sedge weed Monochoria vaginalis (monochoria), California arrowhead Sagittaria montevidensis, Gregg arrowhead Sagittaria longiloba, Ducksalad Heteranthera limosa, Echinodorus berteroi and E. cordifolius (Burhead), Ammannia spp (Redstems), Bacopa spp. (Water hyssops), Alisma plantago-aquatica (Common water plantain). Grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape." [GR:pj, ISBN:9712200299, web:http//www.ipm.ucdavis.edu/PMG/r682700999.html] is_a: TO:0000347 ! weed damage [Term] id: TO:0000102 name: phosphorus sensitivity def: "Sensitivity to the phosphorus content in the growth medium. It is important in various biochemical pathways and storage of energy." [ICIS:1213, IRRI:SES] synonym: "PDef" RELATED [] synonym: "PHOSN" RELATED [] synonym: "phosphorus deficiency" RELATED [] is_a: TO:0000248 ! primary macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:28659 ! phosphorus atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000103 name: deepwater stress def: "The sensitivity response shown by the plant growing in a stagnant water for a long period of time (not unlike deepwater presence during flash flooding of the fields)." [GR:pj] synonym: "deep water stress" RELATED [] synonym: "DWSTR" RELATED [] is_a: TO:0000237 ! water stress trait intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007396 ! flood prone region [Term] id: TO:0000104 name: floury endosperm def: "An endosperm morphology trait (TO:0000575) which is an opaque and soft endosperm (PO:0009089)." [GR:pj, PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000105 name: dull endosperm def: "An endosperm morphology trait (TO:0000575) which is a glassy and tarnished endosperm (PO:0009089) with low amylose content (TO:0000196)." [GR:pj, PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). synonym: "glassy endosperm" RELATED [] xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality intersection_of: PATO:0000328 ! low saturation intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000106 name: male sterility type def: "Represents the different types of male sterility found in plants." [GR:pj] synonym: "MS" RELATED [] is_a: TO:0000437 ! male sterility [Term] id: TO:0000107 name: endosperm storage protein-1 content def: "Assay for the amount of 13kDa seed storage protein present in the endosperm." [GR:pj] is_a: TO:0002653 ! endosperm storage protein content [Term] id: TO:0000108 name: leaf shattering def: "A leaf growth and development trait (TO:0000655) which is the extent of leaf shattering based on the development of a leaf abscission zone (PO:0006501)." [GR:pj, PO:0006501, POC:cooperl] comment: The leaf shattering trait is the occurence of the biological process of leaf abscission (GO:0060866): the controlled shedding of a leaf. synonym: "leaf abscission" RELATED [GO:0060866, SOY:0001342] synonym: "LFSH" RELATED [] xref: GO:0060866 is_a: TO:0000655 ! leaf growth and development trait intersection_of: PATO:0001662 ! fragility intersection_of: inheres_in PO:0009025 ! vascular leaf [Term] id: TO:0000109 name: endosperm storage protein-2 content def: "Assay for amount of 57kDa seed storage protein present in the endosperm." [GR:pj] is_a: TO:0002653 ! endosperm storage protein content [Term] id: TO:0000110 name: wild abortive CMS def: "Abortion of microspore development at uni-nucleate stage." [GR:pj, IRRI:SES] synonym: "CMS-WA" RELATED [] synonym: "WACMS" RELATED [] is_a: TO:0000060 ! aborted uni-nucleate stage is_a: TO:0000232 ! rice cytoplasmic male sterility [Term] id: TO:0000111 name: genetically engineered male sterility def: "The sterility induced by transgenes expressing cytotoxic component." [GR:pj, IRRI:SES] is_a: TO:0000106 ! male sterility type [Term] id: TO:0000112 name: disease resistance def: "An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a pathogen infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj] comment: It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular pathogen variety causing the disease. synonym: "disease control" EXACT [] synonym: "disease resistance trait" EXACT [] synonym: "disease susceptibility" NARROW [] synonym: "disease tolerance" EXACT [] is_a: TO:0000236 ! crop damage resistance [Term] id: TO:0000113 name: giant embryo def: "An embryo shape trait (TO:0000193) that is a large sized plant embryo (PO:0009009)." [GR:pj, PO:0009009, TO:moorel] is_a: PATO:0000586 {is_inferred="true"} ! increased size is_a: TO:0000193 ! embryo shape is_a: TO:1000012 {is_inferred="true"} ! whole plant size intersection_of: PATO:0000586 ! increased size intersection_of: inheres_in PO:0009009 ! plant embryo relationship: inheres_in PO:0009009 {is_inferred="true"} ! plant embryo [Term] id: TO:0000114 name: flooding related trait is_a: TO:0000237 ! water stress trait [Term] id: TO:0000115 name: root mass density def: "Determined as the dry mass of roots per unit soil volume at a given soil section." [GR:pj] synonym: "rmd" RELATED [] synonym: "RTMD" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait intersection_of: PATO:0001353 ! volumetric density intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000116 name: root mass density 0-15 def: "Root mass density 0-15 cm was calculated as the dry mass of roots per unit soil volume at 0-15 cm soil section." [GR:jcl, GR:pj] synonym: "rmd 0-15" RELATED [] is_a: TO:0000115 ! root mass density [Term] id: TO:0000117 name: rat damage resistance def: "Since there is no genetic resistance to rats, the damage can be quantified as it does not represent resistance." [GR:pj, ICIS:1170, IRRI:SES] synonym: "RD" RELATED [] is_a: TO:0000054 ! animal damage resistance [Term] id: TO:0000118 name: root mass density 15-30 def: "Root mass density 15-30 cm was calculated as the dry mass of roots per unit soil volume at 15-30 cm soil section." [GR:jcl, GR:pj] synonym: "rmd 15-30" RELATED [] is_a: TO:0000115 ! root mass density [Term] id: TO:0000119 name: root mass density 30-45 def: "Root mass density 30-45 cm was calculated as the dry mass of roots per unit soil volume at 30-45 cm soil section." [GR:jcl, GR:pj] synonym: "rmd 30-45" RELATED [] is_a: TO:0000115 ! root mass density [Term] id: TO:0000120 name: percent root mass density def: "Calculated as percent of root mass density over the total root mass density. Both parameters scored at the same depth." [GR:pj] synonym: "PCENTRTMD" RELATED [] synonym: "prmd" RELATED [] is_a: TO:0000115 ! root mass density [Term] id: TO:0000121 name: ufra damage def: "Causal agent: the stem nematode Dictylenchus angustus. Symptoms: leaf mottling or chlorotic discoloration in a splash pattern at base of young leaves in stem elongation or mid-tillering stage; brown stains may develop on leaves and sheaths which later intensify to a dark brown color. A characteristic distortion consisting of twisting and withering of young leaves. A distortion of panicle which either remains enclosed with in a swollen sheath, partially emerge but are twisted and with unfilled grains or emerge completely but with unfilled grains and resembling a whitehead." [GR:pj, ICIS:1116, IRRI:SES] comment: Evaluated at growth stage:6-7 in rice. synonym: "U" RELATED [] is_a: TO:0000384 ! nematode damage resistance [Term] id: TO:0000122 name: percent root mass density 0-15 def: "Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 0-15cm depth." [GR:jcl, GR:pj] synonym: "prmd 0-15" RELATED [] is_a: TO:0000116 ! root mass density 0-15 is_a: TO:0000120 ! percent root mass density [Term] id: TO:0000123 name: percent root mass density 15-30 def: "Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 15-30cm depth." [GR:jcl, GR:pj] synonym: "prmd 15-30" RELATED [] is_a: TO:0000118 ! root mass density 15-30 is_a: TO:0000120 ! percent root mass density [Term] id: TO:0000124 name: flag leaf angle def: "A flag leaf morphology trait (TO:0000832) which is an angle of the flag leaf (PO:0020103) measured near the collar, as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants." [ICIS:1065, IRRI:SES, PO:0020103, TO:cooperl, TO:moorel] synonym: "FLFAG" RELATED [] is_a: TO:0000832 ! flag leaf morphology trait intersection_of: PATO:0000133 ! orientation intersection_of: inheres_in PO:0020103 ! flag leaf [Term] id: TO:0000125 name: percent root mass density 30-45 def: "Calculated as percent of root mass density in this section over the total root mass density. Both scored at the 30-45cm depth." [GR:jcl, GR:pj] synonym: "prmd 30-45" RELATED [] is_a: TO:0000119 ! root mass density 30-45 is_a: TO:0000120 ! percent root mass density [Term] id: TO:0000126 name: rice grassy stunt virus-2 resistance def: "Causal agent: rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots." [GR:pj] synonym: "RGSV2" RELATED [] synonym: "RGSV2RS" RELATED [] is_a: TO:0000213 ! rice grassy stunt 1 and 2 virus resistance [Term] id: TO:0000127 name: rice grassy stunt virus-1 resistance def: "Causal agent: rice grassy stunt virus 1 (RGSV1). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots." [GR:pj] synonym: "RGSV1" RELATED [] synonym: "RGSV1RS" RELATED [] is_a: TO:0000213 ! rice grassy stunt 1 and 2 virus resistance [Term] id: TO:0000128 name: harvest index def: "Proportion of usable (economically significant) biomass over total (biological) biomass, expressed as a percentage." [GR:jcl, GR:pj] synonym: "HI" RELATED [] synonym: "HVID" RELATED [] is_a: TO:0000371 ! yield trait [Term] id: TO:0000129 name: false smut disease resistance def: "Causal agent: Ustilaginoidea virens. Symptoms: infected grains are transformed into yellow-greenish or greenish-black velvety-looking spore balls." [GR:pj, ICIS:1106, IRRI:SES] synonym: "FSm" RELATED [] synonym: "FSRS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000130 name: far red light sensitivity def: "Sensitivity to the far red light content in the growth environment." [GR:pj] synonym: "FRLTSN" RELATED [] synonym: "Pfr light sensitivity" RELATED [] is_a: TO:0000265 ! light quality sensitivity [Term] id: TO:0000131 name: leaf water potential def: "Water potential of a leaf." [GR:pj] synonym: "LFWP" RELATED [] synonym: "lwp" RELATED [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000132 name: basal internode diameter def: "Actual measurements in millimeters from the outer diameter of the stem at the basal portion of the main stem." [IRRI:SES] synonym: "BAINDIA" RELATED [] synonym: "DBI" RELATED [] is_a: TO:0000361 ! stem morphology trait [Term] id: TO:0000133 name: stature or vigor trait def: "A subjective assessment of the plant in similar site and growing conditions (often unfavorable conditions) based upon a specific facet of growth." [GR:pj] is_a: TO:0000387 ! plant trait created_by: jaiswalp [Term] id: TO:0000134 name: alkali digestion def: "Is an indirect measure of gelatinization temperature. Observed by placing six milled-rice kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30degC temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high." [GR:pj, IRRI:SES] synonym: "AlkD" RELATED [] synonym: "ALKDIG" RELATED [] is_a: TO:0000462 ! gelatinization temperature [Term] id: TO:0000135 name: leaf length def: "A leaf size (TO:0002637) trait which is a length of a leaf (PO:0025034)." [IRRI:SES, PO:0025034, TO:cooperl, TO:moorel] comment: Actual measurements, in centimeters of the leaf. Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFLG" RELATED [] synonym: "lfln" RELATED [MaizeGDB_QTL:61715] synonym: "LL" RELATED [] xref: MaizeGDB_QTL:61715 xref: PATO:0000122 xref: TO_GIT:247 is_a: TO:0002637 ! leaf size intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000136 name: relative water content def: "Leaf relative water content is determined at midday (12.00 noon)." [GR:jcl, GR:pj] synonym: "leaf relative water content" RELATED [] synonym: "rec" RELATED [] synonym: "RELWCN" RELATED [] is_a: TO:0000131 ! leaf water potential [Term] id: TO:0000137 name: days to heading def: "Number of days required for the inflorescence (head/cob/panicle) to emerge from the flag leaf of a plant or a group of plants in a study." [GR:pj] comment: Often determined when the 50% length of the inflorescence has emerged as compared to its full length. Number of days is calculated from either the day of sowing of seeds or from the day of transplanting the seedlings (in case of rice) depending on type of study. synonym: "DTHD" RELATED [] synonym: "heading date" RELATED [] is_a: TO:0001021 ! days to inflorescence exsertion [Term] id: TO:0000138 name: brown rice protein def: "Total protein content of the brown rice." [ICIS:1260, IRRI:SES] synonym: "brown rice protein content" RELATED [] synonym: "BrP" RELATED [] synonym: "BRWRPROT" RELATED [] synonym: "Prt" RELATED [] is_a: TO:0000598 ! protein content is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0000140 name: apiculus color def: "Color of the apiculus." [IRRI:SES] synonym: "ApC" RELATED [] synonym: "APICL" RELATED [] is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0006033 ! palea apiculus relationship: part_of TO:0000536 ! floret color [Term] id: TO:0000141 name: awn color def: "An awn morphology trait (TO:0002718) which is a color of the awn (PO:0025349)." [IRRI:SES, PO:0025349, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "AWNCL" RELATED [] xref: PATO:0000014 is_a: TO:0002718 ! awn morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025349 ! awn relationship: part_of TO:0000536 ! floret color [Term] id: TO:0000142 name: secondary branching of inflorescence def: "An inflorescence branching (TO:0000050) trait which is the extent of secondary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle)." [GR:pj, IRRI:SES, PO:0009049, TO:moorel] synonym: "panicle secondary branching" RELATED [] synonym: "PnBr" RELATED [] synonym: "SBR" RELATED [] synonym: "secondary branching of panicle" RELATED [] is_a: TO:0000050 ! inflorescence branching [Term] id: TO:0000143 name: relative biomass def: "Relative yield was calculated as the ratio of biomass in stress to that of control." [GR:jcl, GR:pj] synonym: "RB" RELATED [] synonym: "relative biomass yield" RELATED [] synonym: "RELBIOM" RELATED [] is_a: TO:0000327 ! shoot system yield trait [Term] id: TO:0000144 name: milled rice def: "Rice kernels that have been milled to remove the bran, leaving \"white\" or milled rice." [RiceCAP:http\://www.uark.edu/ua/ricecap/ricecapgloss.htm] synonym: "milled rice ratio" RELATED [] synonym: "MR" RELATED [] is_a: TO:0000162 ! grain quality trait [Term] id: TO:0000145 name: internode length def: "Measurement of length of the internode." [GR:pj] synonym: "INLG" RELATED [] intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020142 ! stem internode relationship: part_of TO:0000576 ! stem length [Term] id: TO:0000146 name: seed length alt_id: TO:0000395 def: "A seed morphology trait (TO:0000184) which is the length of a seed (PO:0009010)." [GR:pj, ICIS:1051, IRRI:SES, PO:0009010, TO:moorel] comment: Seed length is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "SDLG" RELATED [] xref: PATO:0000122 xref: TO_GIT:195 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009010 ! seed relationship: part_of TO:0000391 ! seed size [Term] id: TO:0000147 name: rice hoja blanca disease resistance def: "Causal agent: rice hoja blanca virus (RHBV). Symptoms: cream colored to yellow spots, elongating and coalescing to form longitudinal yellowish green to pale green striations. Streaks may coalesce to cover the whole leaf. Brown and sterile glumes with typical \"parrot beak\" shape of deformation." [GR:pj, IRRI:SES] synonym: "HBVRS" RELATED [] synonym: "RHBV" RELATED [] is_a: TO:0000148 ! viral disease resistance [Term] id: TO:0000148 name: viral disease resistance def: "An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a viral pathogen infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj, IRRI:SES] comment: It represents the damage done by the diease and/or the viral pathogen to the plant. The damage is a direct measure of resistance to the particular viral strain causing the diease. is_a: TO:0000112 ! disease resistance is_a: TO:0000242 ! microbial damage resistance [Term] id: TO:0000149 name: seed width def: "A seed morphology trait (TO:0000184) which is the width of a seed (PO:0009010)." [GR:pj, ICIS:1052, IRRI:SES, PO:0009010, TO:moorel] comment: Seed width is measured in millimeters as the distance across the seed and is a component of the seed size (TO:0000391) and can be a component of seed quality (TO:0000162). Refers to (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "plump seed" RELATED [] synonym: "SDWD" RELATED [] xref: PATO:0000921 xref: TO_GIT:194 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009010 ! seed relationship: part_of TO:0000391 ! seed size [Term] id: TO:0000151 name: rice skipper resistance def: "Causal agent: Pelopidas mathias (Fabricius) and Parnara guttata." [GR:pj] synonym: "SKIPRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000152 name: panicle number def: "A panicle morphology trait (TO:0000847) which is the average number of panicles per plant in a study." [GR:pj, ICIS:1057, TO:moorel] synonym: "NOP" RELATED [] synonym: "NP" RELATED [] synonym: "number of effective tiller per plant" RELATED [] synonym: "number of panicle" RELATED [] synonym: "panicle number per plant" RELATED [] synonym: "panicle number per tiller" RELATED [] synonym: "PN" RELATED [] synonym: "PNNB" RELATED [] synonym: "seed setting tillers per plant" RELATED [] synonym: "spike number" RELATED [] synonym: "TP" RELATED [] is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000153 name: relative yield def: "Relative yield is calculated as a ratio of yield in stress to that of control." [GR:jcl, GR:pj] synonym: "RELYLD" RELATED [] synonym: "RY" RELATED [] is_a: TO:0000371 ! yield trait [Term] id: TO:0000154 name: thrips resistance def: "Causal agent: Stenchaetothrips biformis. monitored at growth stage 2-3." [GR:pj, ICIS:1166, IRRI:SES] synonym: "THRIPSRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000155 name: drought susceptibility index def: "The index is calculated as, DSI = (1-Yds/Yns), where Yds and Yns are mean yields of a given genotype in drought susceptible (DS) and non-susceptible (NS) environments respectively." [GR:jcl, GR:pj] synonym: "drought score" RELATED [] synonym: "drought sensitivity index" RELATED [] synonym: "DRSID" RELATED [] synonym: "DRSSID" RELATED [] synonym: "DSI" RELATED [] is_a: TO:0000188 ! drought sensitivity [Term] id: TO:0000156 name: penetrated root dry weight def: "At 50 days after sowing (DAS), the dry weight of roots penetrated through the wax-petrolatum layer is measured." [GR:jcl, GR:pj] synonym: "PENRTDWT" RELATED [] synonym: "PRDW" RELATED [] is_a: TO:0000078 ! root dry weight [Term] id: TO:0000157 name: canopy temperature def: "Assay determines temperature of the leaf canopy." [GR:jcl, GR:pj] synonym: "CANTMP" RELATED [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000158 name: red light sensitivity def: "Sensitivity to the red light content in the growth environment." [GR:pj] synonym: "Pr light sensitivity" RELATED [] synonym: "RLTSN" RELATED [] is_a: TO:0000265 ! light quality sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007207 ! red light regimen intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000159 name: blue light sensitivity def: "Sensitivity response observed in an environment illuminated with blue light." [GR:pj] synonym: "BLTSN" RELATED [] is_a: TO:0000265 ! light quality sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007218 ! blue light regimen intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000160 name: UV light sensitivity def: "Response shown by the plant in the presence of UV light stress." [GR:pj] synonym: "Ultraviolet light sensitivity" RELATED [] synonym: "Ultraviolet resistance" RELATED [] synonym: "UV resistance" RELATED [] synonym: "UVRS" RELATED [] is_a: TO:0000265 ! light quality sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007222 ! UV light regimen intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000161 name: radiation response trait def: "Response shown by the plant in terms of sensitivity to one or more types of radiation stress (quality and quantity of light)." [GR:pj] synonym: "radiation sensitivity" RELATED [] synonym: "RADSN" RELATED [] synonym: "response to radiation" RELATED [] is_a: TO:0000168 ! abiotic stress trait intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007151 ! radiation treatment intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000162 name: grain quality trait alt_id: TO:0000588 def: "A fruit quality trait (TO:0002728) that is the commercial and /or economical value of the grain (i.e. fruit (PO:0009001)), or its overall improvement." [GR:pj, TO:cooperl] xref: TO_GIT:209 is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0000163 name: auxin sensitivity def: "Response with respect to application of auxin." [GR:pj] comment: The most important auxin produced by plants is indole-3-acetic acid (IAA). synonym: "AUXSN" RELATED [] synonym: "IAA response" RELATED [] synonym: "IAA sensitivity" RELATED [] synonym: "indole-3-acetic acid response" RELATED [] synonym: "indole-3-acetic acid sensitivity" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:22676 ! auxin intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000164 name: stress trait def: "Response by the plant in terms of resistivity or sensitivity to either the biotic or the abiotic types of stress." [GR:pj] synonym: "crop damage" RELATED [] synonym: "stress resistance" RELATED [] synonym: "stress susceptibility" RELATED [] synonym: "stress tolerance" RELATED [] is_a: TO:0000387 ! plant trait [Term] id: TO:0000165 name: panicle exsertion def: "A panicle morphology (rice) trait (TO:0000847) monitored by observing the extent of coverage of panicle by the flag leaf sheath." [GR:pj, ICIS:1004, IRRI:SES] synonym: "Exs" RELATED [] synonym: "PNEX" RELATED [] is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000166 name: gibberellic acid sensitivity def: "Sensitivity to the gibberellic acid content in the growth medium or on external application." [GR:pj] synonym: "GA3 response" RELATED [] synonym: "GASN" RELATED [] synonym: "GB response" RELATED [] synonym: "gibberellic acid response" RELATED [] synonym: "Gibberellin response" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity [Term] id: TO:0000167 name: cytokinin sensitivity def: "Sensitivity to the cytokinin content in the growth medium or external application." [GR:pj] synonym: "CKSN" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:23530 ! cytokinin intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000168 name: abiotic stress trait def: "Response by the plant in terms of resistivity or sensitivity to abiotic stress." [GR:pj] synonym: "abiotic stress tolerance" RELATED [] is_a: TO:0000164 ! stress trait [Term] id: TO:0000169 name: chinsurah boro CMS def: "Abortion of microspore development at trinucleate stage." [GR:pj, IRRI:SES] synonym: "BOROCMS" RELATED [] synonym: "CMS-boro" RELATED [] is_a: TO:0000026 ! aborted tri-nucleate stage is_a: TO:0000232 ! rice cytoplasmic male sterility [Term] id: TO:0000170 name: elongation ability def: "Some plants can elongate and grow in areas annually flooded to varying depths. The scale is based on the performance of check varieties. Specify water depth under which the data was recorded." [ICIS:1209, IRRI:SES] synonym: "Elon" RELATED [] is_a: TO:0000114 ! flooding related trait [Term] id: TO:0000171 name: height trait def: "OBSOLETE. A stature and vigor trait (TO:0000133) which is the height of a whole plant (PO:0000003) or another plant structure (PO:0009011)." [GR:pj, TO:cooperl] comment: Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. xref: TO_GIT:226 is_obsolete: true [Term] id: TO:0000172 name: jasmonic acid sensitivity def: "Sensitivity to the jasmonic acid content in the growth medium or on external application." [GR:pj] synonym: "JASN" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:18292 ! jasmonic acid intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000173 name: ethylene sensitivity def: "Sensitivity to ethylene (C2H2) content in the growth medium or the environment." [GR:pj] synonym: "ETHSN" RELATED [] synonym: "ethylene response" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:18153 ! ethene intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000174 name: maturity trait def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000175 name: rice bacterial blight disease resistance def: "Causal agent: Xanthomonas oryzae pv. oryzae." [GR:pj, ICIS:1101, IRRI:SES] comment: Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Young leaves should not be inoculated for assay. Old or leaves with symptoms of nutrient deficiency or other diseases should also be avoided for inoculation. synonym: "BB" RELATED [] synonym: "BBRS" RELATED [] synonym: "leaf blight" RELATED [] is_a: TO:0000770 ! bacterial blight disease resistance [Term] id: TO:0000176 name: macronutrient sensitivity def: "A nutrient sensitivity (TO:0000480) response shown by the plant grown in either an excess or deficient amount of the macronutrient in the growth medium." [GR:pj] synonym: "macronutrient deficiency" RELATED [] is_a: TO:0000480 ! nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in PLANTCHEBIROLE:03 intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000177 name: 2,4-dichlorophenoxyacetic acid sensitivity def: "An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide 2,4-dichlorophenoxyacetic acid (2,4 D)." [GR:pj] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. synonym: "2,4 D sensitivity" RELATED [] synonym: "24DSN" RELATED [] xref: EO:EO\:0007180 is_a: TO:0000058 ! herbicide sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007180 ! 2,4-dichlorophenoxyacetic acid treatment [Term] id: TO:0000178 name: acid soil sensitivity def: "Plant sensitivity to soils with acidic conditions (pH<7)." [GR:pj, TO:moorel] is_a: TO:0000479 ! acid sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007059 ! acidic pH soil environment intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000179 name: biotic stress trait def: "Response by the plant in terms of resistivity or sensitivity to biotic stress." [GR:pj] is_a: TO:0000164 ! stress trait [Term] id: TO:0000180 name: spikelet fertility def: "A spikelet morphology trait (TO:0000657) which is the fertility to a spikelet (PO:0009051)." [GR:pj, ICIS:1001, ICIS:1059, ICIS:1062, IRRI:SES, PO:0009051, TO:moorel] comment: Determined by percent of spikelets with grains identified by pressing the spikelets with the fingers and counting those that have no grains or the percent seed setting.\nRefer to fertility (PATO:0000274): A reproductive quality inhering in a bearer by virtue of the bearer's initiating, sustaining, or supporting reproduction. synonym: "percent sterility" RELATED [] synonym: "seed setting" RELATED [] synonym: "SpFert" RELATED [] synonym: "SPKFRT" RELATED [] is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0000274 ! fertility intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0000181 name: seed weight def: "A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)." [GR:pj, ICIS:1058, PO:0009010, TO:moorel] comment: Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body. xref: TO_GIT:196 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000182 name: insecticide sensitivity def: "The tolerance exhibited by a plant or a group of plants (population) towards the applied insecticide." [TO:moorel] synonym: "insecticide tolerance" RELATED [] is_a: TO:0002649 ! pesticide sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:24852 ! insecticide intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000183 name: other miscellaneous trait def: "The trait instances, which either cannot be assigned any of the eight top level parent terms such as biochemical, anatomy, development quality, stature/vigor, sterility/fertility, stress and the yield or are yet to be assigned a parent." [GR:pj] is_a: TO:0000387 ! plant trait [Term] id: TO:0000184 name: seed morphology trait def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a seed (PO:0009010)." [GR:pj, PO:0009010, TO:moorel] is_a: TO:0000836 ! multi-tissue plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000185 name: stigma color def: "Color of the stigma in a blossoming flower." [GR:pj, IRRI:SES] synonym: "SgC" RELATED [] synonym: "STICL" RELATED [] is_a: TO:0006012 ! carpel morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009073 ! stigma [Term] id: TO:0000186 name: environmental stress related trait def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000187 name: anther color def: "An anther morphology trait (TO:1000022) which is the color (PATO:0000014) of an anther (PO:0009066)" [TO:austin_meier] synonym: "ANTCL" RELATED [] xref: TO_GIT:385 is_a: PATO:0000014 {is_inferred="true"} ! color is_a: TO:1000022 {is_inferred="true"} ! anther morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009066 ! anther relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther [Term] id: TO:0000188 name: drought sensitivity def: "Drought sensitivity is highly interactive with crop phenology, plant growth prior to stress, and timing, duration, and intensity of drought stress. For many soils, it takes at least 2 rainless weeks to cause marked differences in drought sensitivity during the vegetative stage and at least 7 rainless days during the reproductive stage to cause severe drought injury. Leaf rolling precedes leaf drying during drought. Repeated ratings are recommended through progress of the drought." [IRRI:SES] synonym: "drought susceptibility" RELATED [] synonym: "DRS" RELATED [] synonym: "DRSN" RELATED [] is_a: TO:0000394 ! drought related trait intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007404 ! drought environment intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000189 name: embryoless def: "An embryo morphology trait (TO:0000064) which is the absence of embryo in the developing seed." [GR:pj, TO:moorel] synonym: "germless" RELATED [] is_a: TO:0000064 ! plant embryo morphology trait is_a: TO:0000620 ! plant embryo development trait intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0009009 ! plant embryo intersection_of: occurs_in PO:0009010 ! seed [Term] id: TO:0000190 name: seed coat color def: "A seed coat morphology trait (TO:0000838) which is the color of the seed coat (PO:0009088)." [GR:pj, IRRI:SES, PO:0009088, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "bran color" RELATED [] synonym: "SCC" RELATED [] synonym: "SDCCL" RELATED [] xref: PATO:0000014 is_a: TO:0000838 ! seed coat morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009088 ! seed coat relationship: part_of TO:0000486 ! seed color relationship: part_of TO:0000931 ! seed quality trait [Term] id: TO:0000191 name: rice hispa resistance def: "Causal agent: Dicladispa armigera." [GR:pj] synonym: "HISPRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000192 name: leaf-roller resistance def: "Causal agent: Cnaphalocrocis medinalis." [GR:pj] synonym: "LFRRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000193 name: embryo shape def: "An embryo morphology trait (TO:0000064) which is the shape of a plant embryo (PO:0009009)." [PO:0009009, TO:moorel] comment: Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0000064 ! plant embryo morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009009 ! plant embryo [Term] id: TO:0000194 name: globular embryo def: "An embryo shape trait (TO:0000193) which is a globular plant embryo (PO:0009009)." [PO:0009009, TO:moorel] comment: Refer to globular (PATO:0001499): A spheroid quality inhering in a bearer by virtue of the bearer's resembling a ball (a sphere whose equatorial diameter is equal to the polar diameter). xref: PATO:0001499 is_a: TO:0000193 ! embryo shape intersection_of: PATO:0001499 ! spherical intersection_of: inheres_in PO:0009009 ! plant embryo [Term] id: TO:0000195 name: shootless embryo def: "A plant embryo morphology trait (TO:0000064) which is an embryo of the germinating seed not producing a shoot." [GR:pj, TO:moorel] synonym: "SHMIN" RELATED [] is_a: TO:0000064 ! plant embryo morphology trait is_a: TO:0000620 ! plant embryo development trait is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0009006 ! shoot system intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000196 name: amylose content def: "A polysaccharide content trait (TO:0006007) which is the amount of amylose (CHEBI:28102) in a plant structure (PO:0009011)." [ICIS:1251, IRRI:SES, ISBN:198506732] comment: Amylose is a helical polymer made of α-D-glucose units, bound to each other through α(1→4) glycosidic bonds. This polysaccharide is one of the two components of starch, making up approximately 20-30% of the structure. The other component is amylopectin, which makes up 70–80% of the structure. (REF: Wikipedia) synonym: "Amy" RELATED [] synonym: "AMYCN" RELATED [] xref: CHEBI:28102 is_a: TO:0006007 ! polysaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28102 ! amylose intersection_of: occurs_in PO:0009011 ! plant structure relationship: part_of TO:0000489 ! carbohydrate composition related trait relationship: part_of TO:0000667 ! cooking or brewing quality [Term] id: TO:0000197 name: ligule color def: "A ligule morphology trait (TO:0002748) which is the color of a ligule (PO:0020105)." [GR:pj, IRRI:SES, PO:0020105, POC:cooperl] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "LgC" RELATED [] synonym: "LIGCL" RELATED [] xref: PATO:0000014 is_a: TO:0002748 ! ligule morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020105 ! ligule [Term] id: TO:0000198 name: rootless def: "Absence of roots in the seedling or plant." [GR:pj] synonym: "RTMIN" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000656 ! root development trait intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0009005 ! root intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000199 name: genic male sterility synonym: "GMS" RELATED [] is_a: TO:0000106 ! male sterility type [Term] id: TO:0000200 name: brittle culm def: "A measure of brittleness of the stem of a grass plant." [GR:pj] is_a: TO:0000051 ! stem strength intersection_of: PATO:0001362 ! fragile intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0000201 name: panicle color def: "A panicle morphology trait (TO:0000847) which is the variation in color of the panicle inflorescence." [GR:pj] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "PNCL" RELATED [] xref: PATO:0000014 is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000202 name: germination ratio def: "Ratio of germinated to non-germinated seeds." [GR:pj] synonym: "GERMRO" RELATED [] is_a: TO:0000250 ! vigor related trait is_a: TO:0000345 ! seed viability [Term] id: TO:0000203 name: rice bacterial leaf streak disease resistance def: "Causal agent: Xanthomonas oryzae pv. oryzicola." [GR:pj, ICIS:1102, IRRI:SES] comment: Symptoms: linear lesions with small bacterial exudates evident. This scale may also be used for leaf smut caused by Entyloma oryzae. synonym: "BLS" RELATED [] synonym: "BLSRS" RELATED [] is_a: TO:0000315 ! bacterial disease resistance [Term] id: TO:0000204 name: rice seedling blight disease resistance def: "Causal agent: Xanthomonas oryzae pv. oryzae." [GR:pj, ICIS:1117, IRRI:SES] comment: Symptoms: lesions usually start near the leaf tips or leaf margins or both, and extend down the outer edge(s). Young lesions are pale to grayish green, later turning yellow to grey (dead) with time. In very susceptible varieties, lesions may extend to the entire leaf length into the leaf sheath. Kresek or seedling blight causes wilting and death of plant. synonym: "kresek" RELATED [] synonym: "leaf blight" RELATED [] synonym: "SDLBTRS" RELATED [] is_a: TO:0000175 ! rice bacterial blight disease resistance [Term] id: TO:0000205 name: white-backed planthopper resistance def: "Causal agent: Sagotella furcifera. Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper)." [GR:pj, ICIS:1167, IRRI:SES] synonym: "WBPH" RELATED [] synonym: "WBPHRS" RELATED [] is_a: TO:0000348 ! sogatodes resistance [Term] id: TO:0000206 name: leaf angle def: "A leaf attitude (TO:0000206) which is the angle of a leaf (PO:0025034) measured against the stem." [IRRI:SES, POC:ccoperl] comment: In rice, it is measured against the culm on the leaf below the flag leaf. Refer to angle value (PATO:0000602). synonym: "LBP" RELATED [] synonym: "LFAG" RELATED [] xref: PATO:0000602 is_a: TO:0000824 ! leaf attitude intersection_of: PATO:0000133 ! orientation intersection_of: inheres_in PO:0009025 ! vascular leaf created_by: jaiswalp [Term] id: TO:0000207 name: plant height def: "A whole plant morphology trait (TO:0000398) which is the height of a whole plant (PO:0000003)." [ICIS:1006, IRRI:SES, PO:0000003, TO:cooperl] comment: Comment: Refers to: height (PATO_0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. synonym: "Ht" RELATED [] synonym: "PTHT" RELATED [] synonym: "shoot height" RELATED [] xref: PATO:0000119 xref: TO_GIT:367 xref: TO_GIT:84 is_a: PATO:0000119 {is_inferred="true"} ! height is_a: TO:1000012 {is_inferred="true"} ! whole plant size intersection_of: PATO:0000119 ! height intersection_of: inheres_in PO:0000003 ! whole plant relationship: inheres_in PO:0000003 {is_inferred="true"} ! whole plant [Term] id: TO:0000208 name: lemma number def: "A lemma and palea morphology trait (TO:0000079) which is the number of lemma (PO:0009037) in the grass flower (PO:0009001) (floret)." [GR:pj, PO:0009001, PO:0009037, TO:moorel] is_a: TO:0002613 ! reproductive homeotic development trait is_a: TO:0006026 ! floral bract number is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009037 ! lemma relationship: inheres_in PO:0009037 {is_inferred="true"} ! lemma [Term] id: TO:0000209 name: palea number def: "A lemma and palea morphology trait (TO:0000079) which is the number of palea (PO:0009038) in the grass flower (floret)." [GR:pj, PO:0009038, TO:moorel] synonym: "PALNB" RELATED [] is_a: TO:0002613 ! reproductive homeotic development trait is_a: TO:0006026 ! floral bract number is_a: TO:1000024 {is_inferred="true"} ! palea morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009038 ! palea relationship: inheres_in PO:0009038 {is_inferred="true"} ! palea [Term] id: TO:0000210 name: anther number def: "A stamen morphology trait (TO:0000215) which is the number of anthers (PO:0009066) in a stamen (PO:0009029)." [GR:pj, TO:cooperl] synonym: "ANTNB" RELATED [] xref: TO_GIT:387 is_a: TO:0000215 ! stamen morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009066 ! anther intersection_of: occurs_in PO:0009029 ! stamen relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther relationship: part_of TO:0000225 ! stamen number [Term] id: TO:0000211 name: gel consistency def: "Scored by gel consistency type in mm." [ICIS:1255, IRRI:SES] synonym: "GelC" RELATED [] synonym: "GELCON" RELATED [] is_a: TO:0000489 ! carbohydrate composition related trait is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000212 name: green leafhopper resistance def: "Causal agent: Nephotettix spp. (Nephotettix virescens and Nephotettix cincticeps). It is the major vector for transmitting the tungro virus disease. Symptoms: Partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infected areas in the field may be patchy." [GR:pj, ICIS:1156, IRRI:SES] synonym: "GLFHRS" RELATED [] synonym: "GLH" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000213 name: rice grassy stunt 1 and 2 virus resistance def: "Causal agent: rice grassy stunt virus 1 (RGSV1) and rice grassy stunt virus 2 (RGSV2). Symptoms: RGSV1 causes severe stunting, excessive tillering, pale green to yellow and narrow leaves with small rusty spots. RGSV2 causes severe stunting, excessive tillering, yellow to orange and narrow leaves with small rusty spots." [GR:pj, IRRI:SES] synonym: "RGSVRS" RELATED [] is_a: TO:0000148 ! viral disease resistance [Term] id: TO:0000214 name: anther shape def: "An anther morphology trait (TO:1000022) which is the shape (PATO:0000052) of an anther (PO:0009066)." [TO:ethan_johnson] comment: Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "ANTSHP" RELATED [] xref: TO_GIT:385 is_a: PATO:0000052 {is_inferred="true"} ! shape is_a: TO:1000022 {is_inferred="true"} ! anther morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009066 ! anther relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther [Term] id: TO:0000215 name: stamen morphology trait def: "A microsporophyll morphology trait (TO:0000868) which is a quality of a stamen (PO:0009029)." [GR:pj, PO:0009029, TO:moorel] synonym: "stamen related trait" RELATED [] is_a: TO:0000868 ! microsporophyll morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009029 ! stamen [Term] id: TO:0000216 name: grassy stunt virus disease def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000217 name: genic male sterility-thermo-photoperiod sensitive def: "Male sterility affected by both temperature and photoperiod." [GR:pj, IRRI:SES] synonym: "thermo-photoperiod sensitive genic male sterility" RELATED [] synonym: "TPGMS" RELATED [] is_a: TO:0000199 ! genic male sterility [Term] id: TO:0000218 name: pollen abortion type def: "Observations are made on staining behavior and number of nuclei in most of the pollen." [GR:pj, IRRI:SES] synonym: "abortion pattern" RELATED [] synonym: "abortion pattern of male sterile lines" RELATED [] is_a: TO:0000437 ! male sterility [Term] id: TO:0000219 name: stem morphology def: "OBSOLETE." [] synonym: "culm morphology" RELATED [] is_obsolete: true [Term] id: TO:0000220 name: rice bug resistance def: "Causal agent: Leptocorisa oratorius. Monitored at growth stage 7-9, resistance is a measure of damaged grains per panicle." [GR:pj, ICIS:1159, IRRI:SES] synonym: "BUGRS" RELATED [] synonym: "RB" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000221 name: glume color def: "A glume morphology trait (TO:0000869) which is the color of a glume (PO:0009039)." [GR:pj, PO:0009039, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "GLCL" RELATED [] synonym: "glume discoloration" RELATED [] synonym: "glume pigmentation" RELATED [] synonym: "pigmentation of glume" RELATED [] xref: PATO:0000014 is_a: TO:0000869 ! glume morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009039 ! glume [Term] id: TO:0000222 name: head rice def: "The 3/4 or longer whole milled kernels separated from the total milled rice." [RiceCAP:http\://www.uark.edu/ua/ricecap/ricecapgloss.htm] synonym: "head milled rice" RELATED [] synonym: "head rice ratio" RELATED [] synonym: "HEADR" RELATED [] is_a: TO:0000162 ! grain quality trait [Term] id: TO:0000223 name: pistil morphology trait def: "A carpel morphology trait (TO:0006012) which is a quality of a pistil." [GR:pj, TO:moorel] synonym: "pistil related trait " RELATED [] is_a: TO:0006012 ! carpel morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009062 ! gynoecium [Term] id: TO:0000224 name: iron sensitivity def: "Sensitivity to the iron ion content in the growth medium. It is important for synthesis of chlorophyll and some enzyme activities." [GR:pj, ICIS:1211, IRRI:SES] synonym: "FESN" RELATED [] synonym: "FeTox" RELATED [] synonym: "iron toxicity" RELATED [] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:18248 ! iron atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000225 name: stamen number def: "An androecium morphology trait (TO:0000215) which is the number of stamens (PO:0009029) present in an androecium (PO:0009061)." [GR:pj, PO:0009029, PO:0009049, TO:austin_meier, TO:moorel] synonym: "STANB" RELATED [] xref: TO_GIT:386 is_a: TO:0000994 ! androecium morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009029 ! stamen intersection_of: occurs_in PO:0009061 ! androecium [Term] id: TO:0000226 name: auricleless def: "A measure of either the absence of auricle or the length of auricle being zero." [GR:pj] synonym: "AUMIN" RELATED [] synonym: "auricle absence" EXACT [] synonym: "auricle absent" EXACT [] is_a: TO:0000655 ! leaf growth and development trait is_a: TO:0002717 ! leaf sheath auricle morphology trait intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0020106 ! leaf sheath auricle intersection_of: occurs_in PO:0009025 ! vascular leaf [Term] id: TO:0000227 name: root length def: "A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)." [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl] comment: refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points. synonym: "maximum root depth" RELATED [] synonym: "maximum root length" RELATED [] synonym: "MRD" RELATED [] synonym: "MRL" RELATED [] synonym: "RTLG" RELATED [] xref: GIT_TO:365 xref: PATO:0000122 is_a: TO:0000043 ! root morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000228 name: moisture content related trait is_a: TO:0000488 ! seed composition based quality trait [Term] id: TO:0000229 name: photoperiod sensitivity trait def: "Sensitivity response on the plant development and the related growth stages by the duration of light, to which the plant has been exposed." [GR:pj] synonym: "PPDSN" RELATED [] is_a: TO:0000075 ! light sensitivity [Term] id: TO:0000230 name: crown rootless def: "Absence of crown roots in the plant." [GR:pj] synonym: "CWRTMIN" RELATED [] is_a: TO:0000198 ! rootless is_a: TO:0002685 ! crown root number intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0000043 ! crown root intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000231 name: endospermless def: "An endosperm morphology trait (TO:0000575) which is the absence of endosperm (PO:0009089) in the seed (PO:0009010) or grain." [GR:pj, PO:0009010, PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). synonym: "ENDMIN" RELATED [] xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0009089 ! endosperm intersection_of: occurs_in PO:0009010 ! seed [Term] id: TO:0000232 name: rice cytoplasmic male sterility def: "Caused by the interaction of cytoplasmic (mitochondrial) and nuclear genomes. The trait shows non-mendelian inheritance or maternal inheritance." [GR:pj, IRRI:SES] synonym: "" RELATED [] synonym: "CMS" RELATED [] synonym: "cytoplasmic male sterility (sensu Oryza)" EXACT [] is_a: TO:0000580 ! cytoplasmic male sterility [Term] id: TO:0000233 name: root volume def: "Is an indirect measure of root mass or density. Quantified in terms of cubic centimeters by water displacement method." [GR:pj, GR_REF:6917] synonym: "RTVOL" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait intersection_of: PATO:0000918 ! volume intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000234 name: radicleless def: "The embryo of the germinating seed does not produce roots." [GR:pj] is_a: TO:0000198 ! rootless intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0020031 ! radicle intersection_of: occurs_in PO:0009010 ! seed [Term] id: TO:0000235 name: liguleless def: "A ligule morphology trait (TO:0002748) which is the absence of a ligule (PO:0020105)." [GR:pj, PO:0020105, POC:cooperl] comment: Refer to absent (PATO:0000462): A quality denoting the lack of an entity. synonym: "LIGMIN" RELATED [] xref: PATO:0000462 is_a: TO:0002748 ! ligule morphology trait intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0020105 ! ligule intersection_of: occurs_in PO:0009025 ! vascular leaf [Term] id: TO:0000236 name: crop damage resistance synonym: "crop damage resistance trait" EXACT [] is_a: TO:0000179 ! biotic stress trait [Term] id: TO:0000237 name: water stress trait def: "Response by the plant in terms of sensitivity to water stress (quality and quantity of water)." [GR:pj] is_a: TO:0000168 ! abiotic stress trait intersection_of: TO:0000164 ! stress trait intersection_of: inheres_in CHEBI:15377 ! water [Term] id: TO:0000238 name: growth media composition sensitivity def: "A chemical stress sensitivity (TO:0000238) which is the response by the plant to a specific growth medium." [TO:moorel] synonym: "edaphic" RELATED [] is_a: TO:0000482 ! chemical stress sensitivity [Term] id: TO:0000239 name: plant genetic trait unknown def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000240 name: sterile lemma length def: "A lemma and palea morphology trait (TO:0000079) which is the length of the sterile lemma (PO:0009040). The measurement is made on each of the two sterile lemmas." [IRRI:SES, PO:0009040, TO:moorel] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. synonym: "SLmL" RELATED [] synonym: "STLEMLG" RELATED [] xref: PATO:0000122 is_a: TO:1000023 ! lemma morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009040 ! sterile lemma [Term] id: TO:0000241 name: leaf number def: "A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant." [GR:pj, TO:cooperl] synonym: "LFNB" RELATED [] is_a: TO:0000077 ! shoot system morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0025034 ! leaf intersection_of: occurs_in PO:0009006 ! shoot system [Term] id: TO:0000242 name: microbial damage resistance def: "Response by the plant in terms of resistivity or sensitivity to microbes." [GR:pj] is_a: TO:0000236 ! crop damage resistance [Term] id: TO:0000243 name: in vitro regeneration ability def: "Measured as number of calli capable of differentiating into roots and(or) shoots under in vitro tissue culture condition." [GR:pj] synonym: "INVRAB" RELATED [] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000244 name: coleoptile color def: "A coleoptile morphology trait (TO:0000753) which is the the color of a coleoptile (PO:0020033)." [GR:pj, PO:0020033, TO:cooperl] synonym: "COLCL" RELATED [] xref: PATO:0000014 xref: TO_GIT:62 is_a: TO:0000753 ! coleoptile morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020033 ! coleoptile [Term] id: TO:0000245 name: pollen free def: "No pollen development." [GR:pj, IRRI:SES] comment: An example is rice TGMS line Norin PL12. is_a: TO:0000218 ! pollen abortion type [Term] id: TO:0000246 name: rice delphacid resistance def: "Causal agent: Sogatodes oryzicola (Tagosodes orizicolus). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting and death of plants. Infested areas in the field may be patchy. (similar to the symptoms of whitebacked planthopper)." [GR:pj, IRRI:SES] comment: The evaluation scales are based on symptoms. Incidence of dead plants could be considered for final evaluation. synonym: "DELRS" RELATED [] synonym: "RDel" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000247 name: other nutrient sensitivity is_a: TO:0000480 ! nutrient sensitivity [Term] id: TO:0000248 name: primary macronutrient sensitivity def: "A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the primary macronutrient in the growth medium." [TO:moorel] is_a: TO:0000176 ! macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in PLANTCHEBIROLE:04 intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000249 name: leaf senescence def: "A measure of aging of leaf." [ICIS:1015, IRRI:SES] comment: Rapid senescence of leaves can be detrimental to yield. Can be measured by loss of normal leaf color. In triticeae it is often measured on the flag or the second from top leaf. synonym: "Foilar senescence" RELATED [] synonym: "LFSNS" RELATED [] synonym: "Sen" RELATED [] is_a: TO:0000655 ! leaf growth and development trait intersection_of: PATO:0000011 ! age intersection_of: inheres_in PO:0009025 ! vascular leaf [Term] id: TO:0000250 name: vigor related trait is_a: TO:0000133 ! stature or vigor trait [Term] id: TO:0000251 name: secondary macronutrient sensitivity def: "A macronutrient sensitivity (TO:0000176) response shown by the plant either grown in an excess or deficient amount of the secondary macronutrient in the growth medium." [TO:moorel] is_a: TO:0000176 ! macronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in PLANTCHEBIROLE:05 intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000252 name: non-mineral nutrient sensitivity def: "Sensitivity response shown by the plant grown in either the excess or deficient amount of the non-mineral nutrients in the growth medium. These nutrients are found in the air and water." [GR:pj] is_a: TO:0000480 ! nutrient sensitivity [Term] id: TO:0000253 name: seed dormancy synonym: "SDDOR" RELATED [] is_a: TO:0000166 ! gibberellic acid sensitivity is_a: TO:0000345 ! seed viability is_a: TO:0000615 ! abscisic acid sensitivity [Term] id: TO:0000254 name: growth media pH sensitivity def: "A growth media composition sensitivity (TO:0000238) which is the response of the plant to the pH of the growth media (soil/culture media), whether it be acidic or alkaline." [GR:pj, TO:moorel] synonym: "soil pH stress" RELATED [] is_a: TO:0000238 ! growth media composition sensitivity [Term] id: TO:0000255 name: sheath blight disease resistance def: "Causal agent: Rhizoctonia solani. Symptom: Grayish-green lesions may enlarge and coalesce with other lesions, mostly on lower leaf sheaths, but occasionally on the leaves." [IRRI:SES] synonym: "ShB" RELATED [] synonym: "SHBTRS" RELATED [] xref: TO_GIT:67 is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0000256 name: genetic trait def: "OBSOLETE. A genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed individual that is linked to a physical or genetic marker" [GR:pj] is_obsolete: true [Term] id: TO:0000257 name: root branching def: "The extent of the root branching as determined under variable treatments and environments." [GR:pj] synonym: "rbr" RELATED [] synonym: "RTBR" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait intersection_of: PATO:0000402 ! branched intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000258 name: leaf thickness def: "A leaf size (TO:0002637) trait which is the thickness of a leaf (PO:0025034)." [PO:0025034, TO:moorel] comment: Refers to thickness PATO:0000915 A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. xref: PATO:0000915 is_a: TO:0002637 ! leaf size intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000259 name: heat tolerance def: "Tolerance to warm temperatures if plant is exposed to above than permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages. Mainly scored in terms of spikelet fertility in grasses." [GR:pj, ICIS:1210, IRRI:SES] synonym: "HTol" RELATED [] is_a: TO:0000432 ! temperature response trait intersection_of: PATO:0000515 ! tolerant to intersection_of: inheres_in EO:0007173 ! warm/hot temperature regimen [Term] id: TO:0000260 name: bird damage resistance def: "Since there is no genetic resistance to birds, the damage can be quantified as it does represent resistance. Factors as flag leaf angle or panicle exsertion are important." [GR:pj, ICIS:1169, IRRI:SES] synonym: "BD" RELATED [] is_a: TO:0000054 ! animal damage resistance [Term] id: TO:0000261 name: insect damage resistance def: "An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to insect infestation as compared to the susceptible and/or the reference plants of the same species." [GR:pj, IRRI:SES] comment: It represents the damage done by the insects to the plant. The damage is a direct measure of resistance to the particular insect variety. The test evaluation is valid if insect population is uniformly distributed at a high level across the screening box or the field. synonym: "insect resistance" NARROW [] is_a: TO:0000054 ! animal damage resistance created_by: jaiswalp [Term] id: TO:0000262 name: panicle shape def: "A panicle morphology trait (TO:0000847) which is the shape of the panicle inflorescence." [GR:pj] comment: Refer to shape PATO:0000052:A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000264 name: lemma and palea color def: "A lemma and palea morphology trait (TO:0000079) which is the color of the lemma (PO:0009037) and the palea (PO:0009038)." [GR:pj, IRRI:SES, PO:0009037, PO:0009038, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "LEMCL" RELATED [] synonym: "Lemma color" RELATED [] synonym: "LEMPALCL" RELATED [] synonym: "LmPC" RELATED [] synonym: "PALCL" RELATED [] synonym: "palea color" RELATED [] xref: PATO:0000014 is_a: TO:0000079 ! flower bract morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009034 ! flower bract relationship: part_of TO:0000536 ! floret color [Term] id: TO:0000265 name: light quality sensitivity def: "Response shown by the plant in the presence of a light quality stress." [GR:pj] comment: Light quality is defined by the wavelength of the light type. synonym: "response to light quality" RELATED [] is_a: TO:0000075 ! light sensitivity [Term] id: TO:0000266 name: chalky endosperm def: "An endosperm morphology trait (TO:0000575) which is the chalkiness of an endosperm (PO:0009089) on the scale of (a) white belly, (b) white center or (c) white back." [GR:pj, ICIS:1253, IRRI:SES, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). synonym: "CHALK" RELATED [] synonym: "chalkiness of endosperm" RELATED [] synonym: "Clk" RELATED [] xref: TO_GIT:133 is_a: TO:0000489 ! carbohydrate composition related trait is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000267 name: inflorescence type alt_id: TO:0000500 def: "An inflorescence morphology trait (TO:0000373) which is the variation in the type of inflorescence, wither due to extent and number of branching, branch angles or modified form of the inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] synonym: "inflorescence type" RELATED [] synonym: "INFLOTYPE" EXACT [] is_a: TO:0000373 ! inflorescence morphology trait [Term] id: TO:0000268 name: inflorescence shape def: "An inflorescence morphology trait (TO:0000373) which is the shape of an inflorescence (PO:0009049)." [GR:pj, PO:0009049, POC:cooperl] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "head shape" NARROW [] xref: PATO:0000052 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000269 name: 100-seed weight alt_id: TO:0000518 def: "Measurements in grams of 100 well-developed whole grains (seeds with the hull), dried to 13% moisture content, weight on a precision balance." [GR:pj, IRRI:SES] synonym: "100-grain weight" RELATED [] synonym: "HGRWT" RELATED [] synonym: "HSDWT" RELATED [] synonym: "hundred grain weight" RELATED [] synonym: "hundred seed weight" RELATED [] is_a: TO:0000181 ! seed weight [Term] id: TO:0000270 name: inflorescence axis angle def: "An inflorescence morphology trait (TO:0000782) which is the angle of the inflorescence axis (PO:0020122)." [GR:pj, PO:0020122, POC:cooperl] comment: Refers to the angle ((PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle) of an inflorescence axis (PO:0020122). xref: PATO:0002326 is_a: TO:0000782 ! inflorescence axis morphology trait intersection_of: PATO:0000133 ! orientation intersection_of: inheres_in PO:0020122 ! inflorescence axis [Term] id: TO:0000271 name: inflorescence length is_a: TO:0006031 ! inflorescence size intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000272 name: plant survivability def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000273 name: armyworm resistance def: "Causal agent: Pseudaletia unipuncta, Spodoptera mauritia and Spodoptera praefica. The swarming caterpillars cause severe damage to rice plants in nursery beds." [GR:pj, web:http//pne.gsnu.ac.kr/riceipm/spodopte.htm, web:http//www.ipm.ucdavis.edu/PMG/r682300411.html] comment: The worms appear suddenly in masses and move like an army from field to field so that seedbeds or the direct seeded fields look as if grazed by cattles. Generally, a transplanted crop is not severely affected. Damage by armyworms is most serious during periods of stem elongation and grain formation. Larvae defoliate plants, typically by chewing angular pieces off leaves. They may also feed on the panicle near the developing kernels causing these kernels to dry before filling. This feeding causes all or parts of the panicle to turn white. If the entire panicle is white, the damage may also be due to stem rot or feeding by rats. The seriousness of armyworm injury depends on the maturity of the plant and the amount of tissue consumed. Significant yield reduction can occur if defoliation is greater than 25% at 2 to 3 weeks before heading. They migrate from field to field and extensive losses are often caused within a week. Their migration is facilitated by the absence of standing water in the field. synonym: "AWRRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000274 name: floret morphology trait def: "A flower morphology trait (TO:0000499) which is a quality of a grass floret and its parts." [GR:pj, TO:moorel] synonym: "floret related trait" RELATED [] xref: TO_GIT:105 is_a: TO:0000499 ! flower morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009082 ! spikelet floret [Term] id: TO:0000275 name: perianth morphology trait def: "A collective phyllome structure morphology trait (TO:0000845) which is a quality of a perianth (PO:0009058)." [GR:pj, PO:0009058, TO:cooperl, TO:moorel] synonym: "perianth related trait" RELATED [] xref: TO_GIT:105 xref: TO_GIT:306 is_a: TO:0000845 ! collective phyllome structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009058 ! perianth [Term] id: TO:0000276 name: drought tolerance def: "Becoming tolerant to drought like conditions of minimal or no water content in the growth environment." [GR:pj] comment: Often the plants exhibiting high salt tolerance also exhibit drought tolerance. synonym: "drought resistance" EXACT [] synonym: "DRTL" RELATED [] is_a: TO:0000394 ! drought related trait [Term] id: TO:0000277 name: biochemical trait def: "A plant trait (TO:0000387) which is a quality of a chemical entity (CHEBI:24431), a plant metabolite (CHEBI:76924), or a molecular function (GO:0003674), which occurs in a cellular component (GO:0005575), plant anatomical entity (PO:0025131) or during a plant structure development stage (PO:0009012)." [GR:pj, TO:cooperl] is_a: TO:0000387 ! plant trait [Term] id: TO:0000278 name: root to shoot ratio def: "The ratio determined from the parameters evaluated for root length and the shoot length in a study." [GR:pj] synonym: "r/s" EXACT [] synonym: "root length to shoot length ratio" EXACT [] synonym: "root/shoot ratio" EXACT [] synonym: "RTSHRO" EXACT [] is_a: TO:0000043 ! root morphology trait intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in PO:0009005 ! root intersection_of: relative_to PO:0009006 ! shoot system [Term] id: TO:0000279 name: root weight def: "The average dry or fresh weight of the root determined in a study." [GR:pj] synonym: "RTWT" RELATED [] synonym: "total root weight" RELATED [] synonym: "TRW" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000280 name: seedling vigor def: "Represents the seedling growth of the plant." [ICIS:1007, IRRI:SES] synonym: "Sd" RELATED [] synonym: "SDLVIG" RELATED [] is_a: TO:0000296 ! vegetative vigor [Term] id: TO:0000281 name: metabolite content trait def: "The trait associated with an assay to determine the affected metabolite's profile." [GR:pj] is_a: TO:0000277 ! biochemical trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:25212 ! metabolite [Term] id: TO:0000282 name: enzymatic activity and protein content related trait def: "OBSOLETE: The trait associated with an assay to determine the effected enzymatic activity and protein content." [GR:pj] is_obsolete: true [Term] id: TO:0000283 name: biological process trait alt_id: TO:0000349 def: "A plant trait (TO:0000387) which is a process quality (PATO:0001236) of a biological process (GO:0008150) which occurs in a plant anatomical entity (PO:0025131), a cellular component (GO:0005575), or during a plant structure development stage (PO:0009012)." [GO:0008150, GR:pj, TO:cooperl] comment: Refers to process quality (PATO:0001236): A quality which inheres in an process. synonym: "physiological process trait" EXACT [] xref: TO_GIT:378 is_a: TO:0000387 ! plant trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0008150 ! biological_process [Term] id: TO:0000284 name: ADP glucose pyrophosphorylase activity trait def: "Catalysis of the reaction: ATP + alpha-D-glucose 1-phosphate = diphosphate + ADP-glucose." [EC:2.7.7.27, GO:0008878] synonym: "adenosine diphosphate glucose pyrophosphorylase" RELATED [] synonym: "adenosine diphosphoglucose pyrophosphorylase" RELATED [] synonym: "ADP-glucose pyrophosphorylase" RELATED [] synonym: "ADP-glucose synthase" RELATED [] synonym: "ADP-glucose synthetase" RELATED [] synonym: "ADPG pyrophosphorylase" RELATED [] synonym: "AGPACT" RELATED [] synonym: "glucose 1-phosphate adenylyltransferase" RELATED [] synonym: "glucose-1-phosphate adenylyltransferase activity" RELATED [] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0008878 ! glucose-1-phosphate adenylyltransferase activity [Term] id: TO:0000285 name: nodal tillering is_a: TO:0000329 ! tillering ability [Term] id: TO:0000286 name: submergence sensitivity def: "Measure of sensitivity of a plant if placed under submergence condition." [ICIS:1215, IRRI:SES] synonym: "Sub" RELATED [] synonym: "submergence tolerance" RELATED [] synonym: "SUBSN" RELATED [] is_a: TO:0000114 ! flooding related trait [Term] id: TO:0000287 name: brown rice shape def: "A grain shape (TO:0002730) of the brown rice. Measure after harvesting, cleaning, and dehulling." [ICIS:1258, IRRI:SES, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "BrS" RELATED [] synonym: "BRWSHP" RELATED [] xref: PATO:0000052 is_a: TO:0002730 ! grain shape [Term] id: TO:0000288 name: alpha-amylase activity def: "Catalysis of the endohydrolysis of 1,4-a-D-glucosidic linkages in polysaccharides containing three or more 1,4-a-linked D-glucose units." [EC:3.2.1.1, GO:0004556] synonym: "alpha amylase" RELATED [] synonym: "ALPHAAMYASEACT" RELATED [] synonym: "Amy" RELATED [] synonym: "endoamylase" RELATED [] synonym: "glycogenase" RELATED [] synonym: "taka-amylase A" RELATED [] is_a: TO:0000703 ! amylase activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in TO:0000288 ! alpha-amylase activity relationship: part_of TO:0000336 ! total amylase activity [Term] id: TO:0000289 name: carotene content def: "A carotenoid content trait (TO:0000496) which is the amount of carotene (CHEBI:23042) in a plant structure (PO:0009011)." [GR:PJ, ISBN:198506732, TO:Cooperl] comment: Carotenes are a group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants, and unlike the xanthophylls, do not contain any oxygen. xref: CHEBI:23042 xref: TO_GIT:24 is_a: TO:0000496 ! carotenoid content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:23042 ! carotene intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000290 name: flavonoid content def: "A phytochemical compound content trait (TO:0000674) which is the amount of flavonoid (CHEBI:47916) in a plant structure (PO:0009011)." [GR:pj, TO:cooperl] comment: Flavonoids are water soluble polyphenolic molecules containing 15 carbon atoms. Flavonoids belong to the polyphenol family and have antioxidant activity. xref: CHEBI:47916 is_a: TO:0000674 ! phytochemical compound content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:47916 ! flavonoid intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000291 name: carbohydrate content def: "A metabolite content trait (TO:0000281) which is the amount of carbohydrate (CHEBI:16646) in a plant structure (PO:0009011)." [GR:pj, TO:cooperl] synonym: "CARBCN" RELATED [] xref: CHEBI:16646 is_a: TO:0000281 ! metabolite content trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:16646 ! carbohydrate intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000292 name: yellow dwarf disease resistance def: "Causal agent: Mycoplasma. Symptoms: pale yellow, droopy leaves, excessive tillering and stunting." [GR:pj, IRRI:SES] synonym: "YD" RELATED [] synonym: "YDRS" RELATED [] is_a: TO:0000013 ! resistance to disease by mycoplasma-like organism [Term] id: TO:0000293 name: chlorophyll-a content def: "Measures the chlorophyll-a (Chl-a) content in a green tissue. It is a type of chlorophyll present as green pigment in plants." [GR:pj] synonym: "chl-a" RELATED [] is_a: TO:0000495 ! chlorophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18230 ! chlorophyll a [Term] id: TO:0000294 name: leaf sheath auricle color def: "A leaf sheath auricle morphology trait (TO:0002717) which is the color of a leaf sheath auricle (PO:0020106)." [IRRI:SES, PO:0020106, POC:cooperl] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "AC" RELATED [] synonym: "AUCL" RELATED [] xref: PATO:0000014 is_a: TO:0002717 ! leaf sheath auricle morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020106 ! leaf sheath auricle [Term] id: TO:0000295 name: chlorophyll-b content def: "Measures the chlorophyll-b (Chl-b) content in a green tissue. It is a type of chlorophyll present as green pigment in plants." [GR:pj] is_a: TO:0000495 ! chlorophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27888 ! chlorophyll b [Term] id: TO:0000296 name: vegetative vigor def: "Represents the growth of plant. Used to evaluate genetic material under stress and non-stress conditions, several factors may interact, influencing the seedling vigor (e.g. tillering ability, plant height, etc)." [GR:pj] synonym: "vegetative growth vigor" RELATED [] synonym: "Vg" RELATED [] synonym: "VGVIG" RELATED [] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000297 name: glucosamine content def: "An oligosaccharide content (TO:0006003) which is the amount of glucosamine (CHEBI:5417) in a plant structure (PO:0009011)." [] comment: It is one of the most abundant natural polysaccharide. synonym: "2-amino-2-deoxyglucopyranose content" RELATED [] synonym: "GLUCNCN" RELATED [] xref: CHEBI:5417 xref: GR:PJ xref: ISBN:198506732 is_a: TO:0006003 ! oligosaccharide content is_a: TO:0006008 ! carbohydrate derivative content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:5417 ! glucosamine intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000298 name: chlorophyll ratio def: "Measures the a-a to chlorophyll-b content ratio in a green tissue. Chlorophyll is the green pigment found in plants." [ISBN:198506732] comment: The average ratio of chl-a to chl-b is about 3:1. synonym: "chl-a to chl-b ratio" RELATED [] synonym: "chlorophyll content ratio" RELATED [] synonym: "CHLRO" RELATED [] is_a: TO:0000495 ! chlorophyll content intersection_of: PATO:0001470 ! proportionality to intersection_of: has_dividend_entity CHEBI:18230 ! chlorophyll a intersection_of: has_divisor_entity CHEBI:27888 ! chlorophyll b intersection_of: has_ratio_quality PATO:0000070 ! amount [Term] id: TO:0000299 name: leaf lamina color def: "A leaf lamina morphology trait (TO:0000829) which is the color of the leaf lamina (PO:0020039)." [ICIS:1054, IRRI:SES, PO:0020039, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "LBC" RELATED [] synonym: "leaf blade color" RELATED [] synonym: "leaf color" RELATED [] synonym: "LFLCL" RELATED [] xref: PATO:0000014 is_a: TO:0000829 ! leaf lamina morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020039 ! leaf lamina [Term] id: TO:0000300 name: glucose content def: "Amount of glucose present in the plant or plant part." [GR:pj] comment: It is a common monosaccharide that is a component of oligo/disaccharides (sucrose, lactose, and maltose) and various complex carbohydrates. synonym: "D-glucose content" RELATED [] synonym: "dextrose content" RELATED [] synonym: "GLUCCN" RELATED [] is_a: TO:0000307 ! hexose content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17234 ! glucose [Term] id: TO:0000301 name: xanthophyll content def: "The xanthophyll content in a plant or plant part." [ISBN:198506732] comment: These are any group of naturally occurring tetraterpenes (carotenoids) that are synthesized only in plants and contain oxygen in various forms. synonym: "XANCN" RELATED [] is_a: TO:0000496 ! carotenoid content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27325 ! xanthophyll [Term] id: TO:0000302 name: smut disease def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000303 name: cold tolerance def: "Tolerance to cold temperatures if plant is exposed to below permissive temperature limits. Observe differences in vigor along with subtle changes in leaf color. The optimum time to make observations would be the seedling, tillering (sensu Poaceae), flowering and mature stages." [GR:pj, IRRI:SES] synonym: "COLDTL" RELATED [] synonym: "CTol" RELATED [] is_a: TO:0000432 ! temperature response trait intersection_of: PATO:0000515 ! tolerant to intersection_of: inheres_in EO:0007174 ! cold temperature regimen [Term] id: TO:0000304 name: seed thickness def: "A seed morphology trait (TO:0000184) which is the thickness of a seed (PO:0009010)." [GR:pj, PO:0009010, TO:moorel] comment: Seed thickness is a component of seed size (TO:0000391) and has a component of seed quality (TO:0000162). Refer to (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. synonym: "SDTH" RELATED [] xref: PATO:0000915 xref: TO_GIT:197 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0009010 ! seed relationship: part_of TO:0000391 ! seed size [Term] id: TO:0000305 name: glutamine synthetase content def: "Catalysis of the reaction: ATP + L-glutamate + ammonia = ADP + phosphate + L-glutamine." [EC:6.3.1.2, GO:0004356] synonym: "glutamate-ammonia ligase" RELATED [] synonym: "glutamylhydroxamic synthetase" RELATED [] synonym: "GS1" RELATED [] synonym: "GS1CN" RELATED [] synonym: "L-glutamine synthetase" RELATED [] is_a: TO:0000598 ! protein content [Term] id: TO:0000306 name: root thickness def: "The average thickness of roots." [GR:jcl, GR:pj] synonym: "RTTH" RELATED [] is_a: TO:0000043 ! root morphology trait intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0000307 name: hexose content def: "Amount of hexose present in the plant or plant part." [ISBN:198506732] comment: Hexose is any aldose having a chain of six carbon atoms in a molecule. synonym: "HEXCN" RELATED [] is_a: TO:0006006 ! monosaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18133 ! hexose [Term] id: TO:0000308 name: male fertility restoration trait def: "Describes the extent of fertile pollen percentage. Also refers to male sterility-measure (extent of sterility)." [GR:pj, IRRI:SES] synonym: "male fertility restoration in F1 hybrids" RELATED [] synonym: "MALERF" RELATED [] is_a: TO:0000371 ! yield trait is_a: TO:0000497 ! fertility restoration trait [Term] id: TO:0000310 name: self-incompatibility def: "Self-incompatibility allows plants to recognize and reject pollen from the same plant, thereby reducing inbreeding." [PubMed:PMID_10066554] comment: In most cases self-incompatibility is controlled by a single genetic locus, recent results show that complex signal transduction pathways and many players are involved in pollen recognition and rejection. synonym: "Genetic self-incompatibility" RELATED [] is_a: TO:0000035 ! incompatibility trait [Term] id: TO:0000311 name: invertase activity trait def: "Catalysis of the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides." [EC:3.2.1.26, GO:0004564] synonym: "acid invertase" RELATED [] synonym: "alkaline invertase" RELATED [] synonym: "beta-D-fructofuranoside fructohydrolase" RELATED [] synonym: "beta-fructofuranosidase activity" RELATED [] synonym: "beta-fructosidase" RELATED [] synonym: "beta-h-fructosidase" RELATED [] synonym: "fructosylinvertase" RELATED [] synonym: "glucosucrase" RELATED [] synonym: "INVACT" RELATED [] synonym: "invertin" RELATED [] synonym: "maxinvert L 1000" RELATED [] synonym: "saccharase" RELATED [] synonym: "sucrase" RELATED [] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0004564 ! beta-fructofuranosidase activity [Term] id: TO:0000312 name: NADH glutamate synthase content def: "Catalysis of the reaction: 2 L-glutamate + NAD+ = L-glutamine + 2-oxoglutarate + NADH + H+." [EC:1.4.1.14, GO:0016040] synonym: "glutamate (reduced nicotinamide adenine dinucleotide) synthase" RELATED [] synonym: "glutamate synthase (NADH) activity" RELATED [] synonym: "glutamate synthase (NADH2)" RELATED [] synonym: "L-glutamate synthase (NADH)" RELATED [] synonym: "L-glutamate synthetase" RELATED [] synonym: "NADH-dependent glutamate synthase" RELATED [] synonym: "NADH-glutamate synthase" RELATED [] synonym: "NADHGOGATCN" RELATED [] is_a: TO:0000598 ! protein content [Term] id: TO:0000313 name: perodidase-71 content def: "Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O." [EC:1.11.1.7, GO:0004601] synonym: "P71CN" RELATED [] is_a: TO:0000598 ! protein content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:8027 [Term] id: TO:0000314 name: phosphoglycerate mutase content def: "Catalysis of the reaction: 2-phospho-D-glycerate = 3-phospho-D-glycerate." [EC:5.4.2.1, GO:0004619] synonym: "PGAM" RELATED [] synonym: "PGAMCN" RELATED [] is_a: TO:0000598 ! protein content [Term] id: TO:0000315 name: bacterial disease resistance def: "The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj] comment: It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease. is_a: TO:0000112 ! disease resistance is_a: TO:0000242 ! microbial damage resistance [Term] id: TO:0000316 name: photosynthetic ability def: "The photosynthesis ability determined on a plant or the plant part under stress." [GR:pj] comment: Methods may include actual measurements on photosynthesis, pigment content or the content and composition of enzymes associated with photosynthesis. synonym: "PHOTOSYNAB" RELATED [] is_a: TO:0000283 ! biological process trait [Term] id: TO:0000317 name: cutworm resistance def: "Causal agent: Spodoptera litura." [GR:pj] synonym: "CUWRRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000318 name: reducing sugar content def: "Amount of reducing sugar present in the plant or plant part." [GR:pj] comment: A reducing sugar is any sugar which in basic solution forms contain aldehyde or ketone groups that are oxidised to carboxylic acids. synonym: "REDSUGCN" RELATED [] is_a: TO:0000333 ! sugar content [Term] id: TO:0000319 name: rubisco content def: "Amount of Rubisco enzyme or protein present in a given plant or the plant part." [GR:pj] synonym: "RUBISCOCN" RELATED [] is_a: TO:0000598 ! protein content [Term] id: TO:0000320 name: rubisco to chlorophyll ratio def: "A ratio of the amount of rubisco protein to that of the chlorophyll content in a plant or plant part." [GR:pj] synonym: "RUBISCOCHLRO" RELATED [] is_a: TO:0000298 ! chlorophyll ratio is_a: TO:0000319 ! rubisco content [Term] id: TO:0000321 name: rubisco to nitrogen content ratio def: "A ratio of the amount of rubisco protein to that of the total nitrogen content in a plant or plant part." [GR:pj] synonym: "RUBISCONICNRO" RELATED [] is_a: TO:0000319 ! rubisco content [Term] id: TO:0000322 name: phenotypic acceptability def: "Breeding objectives for each variety and trait varies. The evaluation should reflect the overall acceptability of the variety." [ICIS:1005, IRRI:SES] synonym: "overall liking" RELATED [] synonym: "PAcp" RELATED [] is_a: TO:0000597 ! quality trait [Term] id: TO:0000323 name: stem rot disease resistance def: "Causal agent: Magnaporthe salvinii (Nakataea sigmoidea, Sclerotium oryzae), and Helminthosporium sigmoideum var. irregulare. Symptoms: dark lesions develop on the stems near the water line. Small, dark bodies (sclerotia) develop, weaken the stem and cause lodging." [GR:pj, ICIS:1115, IRRI:SES] synonym: "CULMROTRS" RELATED [] synonym: "SR" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000324 name: rubisco to soluble protein ratio def: "A ratio of the amount of rubisco protein to that of the soluble protein content in a plant or plant part." [GR:pj] synonym: "RUBISCOSPROTRO" RELATED [] is_a: TO:0000319 ! rubisco content [Term] id: TO:0000325 name: soluble protein content def: "Amount of the soluble protein present in the plant or the plant part." [GR:pj] synonym: "SPROTCN" RELATED [] is_a: TO:0000490 ! seed protein composition trait is_a: TO:0000598 ! protein content [Term] id: TO:0000326 name: leaf color def: "A leaf morphology trait (TO:0000748) which is the color of a leaf (PO:0025034)." [GR:pj, PO:0025034, TO:cooperl] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFCL" RELATED [] xref: PATO:0000014 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025034 ! leaf created_by: jaiswalp [Term] id: TO:0000327 name: shoot system yield trait def: "A yield trait (TO: 0000371) that is the amount of a plant structure (PO:0009011) or portion of plant substance (PO:0025161) produced by the shoot system (PO:0009006) which is harvested." [ICIS:1301, ISBN:0198506732, TO:cooperl] synonym: "BIOMYLD" RELATED [] synonym: "BY" RELATED [] xref: TO_GIT:289 is_a: TO:0000371 ! yield trait [Term] id: TO:0000328 name: sucrose content def: "The amount of sucrose present in the plant or the plant part." [GR:pj] synonym: "saccharose content" RELATED [] synonym: "SUCROSECN" RELATED [] is_a: TO:0006007 ! polysaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17992 ! sucrose [Term] id: TO:0000329 name: tillering ability def: "Degree of tillering is affected by variety, spacing of plants in the field, season of planting, and environmental conditions e.g. nitrogen levels." [GR:pj, ICIS:1009, ISBN:9712200299] synonym: "Ti" RELATED [] synonym: "TIAB" RELATED [] is_a: TO:0000371 ! yield trait is_a: TO:0000654 ! shoot system growth and development trait [Term] id: TO:0000330 name: outcrossing potential def: "It is a measure of percent seed set on the out-pollinated primary panicle." [GR:pj, ICIS:1061, IRRI:SES] comment: . synonym: "extent of outcrossing" RELATED [] synonym: "extent of outcrossing on male sterile lines" RELATED [] is_a: TO:0000371 ! yield trait [Term] id: TO:0000331 name: sucrose phosphate synthase activity trait def: "Catalysis of the reaction: UDP-glucose + D-fructose 6-phosphate = UDP + sucrose 6-phosphate." [EC:2.4.1.14, GO:0046524] synonym: "SPS" RELATED [] synonym: "SPSACT" RELATED [] synonym: "sucrose 6-phosphate synthase" RELATED [] synonym: "sucrose phosphate synthetase" RELATED [] synonym: "sucrose phosphate-uridine diphosphate glucosyltransferase" RELATED [] synonym: "sucrose-phosphate synthase activity" RELATED [] synonym: "sucrosephosphate-UDP glucosyltransferase" RELATED [] synonym: "UDP-glucose-fructose-phosphate glucosyltransferase" RELATED [] synonym: "uridine diphosphoglucose-fructose phosphate glucosyltransferase" RELATED [] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0046524 ! sucrose-phosphate synthase activity [Term] id: TO:0000332 name: rice whorl maggot resistance def: "Causal agent: Hydrellia philippina. Symptoms: Leaf margin feeding causes conspicuous damage and sometimes stunting of plants." [GR:pj, ICIS:1162, IRRI:SES] synonym: "RWM" RELATED [] synonym: "RWMRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000333 name: sugar content def: "Amount of sugar present in the plant or the plant part." [GR:pj] synonym: "SUGARCN" RELATED [] is_a: TO:0000291 ! carbohydrate content [Term] id: TO:0000334 name: hybrid evaluation def: "OBSOLETE." [] synonym: "parental line evaluation" RELATED [] is_obsolete: true [Term] id: TO:0000335 name: ligule shape def: "A ligule morphology trait (TO:0002748) which is the actual shape of the ligule (PO:0020105)." [IRRI:SES, PO:0020105, POC:cooperl] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's\nratios of distances between its features (points, edges, surfaces and\nalso holes etc). synonym: "LIGSHP" RELATED [] synonym: "LS" RELATED [] xref: PATO:0000052 is_a: TO:0002748 ! ligule morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0020105 ! ligule [Term] id: TO:0000336 name: total amylase activity def: "A combined activity of both the alpha and beta amylase enzymes." [EC:3.2.1.-, GO:0016160, GR:pj] synonym: "amylase activity" RELATED [] synonym: "TAMYASEACT" RELATED [] is_a: TO:0000703 ! amylase activity trait relationship: part_of TO:0000606 ! diastatic power [Term] id: TO:0000337 name: kneeing ability def: "Represents the angle of the tiller in the submerged water fields (flash flooding)." [ICIS:1212, IRRI:SES] comment: Less is the tiller angle compared to water surface the least is the chance of plant's survivability. synonym: "KnA" RELATED [] synonym: "KNEAB" RELATED [] synonym: "tiller angle" RELATED [] is_a: TO:0000114 ! flooding related trait [Term] id: TO:0000338 name: beta-amylase activity def: "Catalysis of the hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains." [EC:3.2.1.2, GO:0016161] synonym: "BETAAMYASEACT" RELATED [] is_a: TO:0000703 ! amylase activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in TO:0000338 ! beta-amylase activity relationship: part_of TO:0000336 ! total amylase activity [Term] id: TO:0000339 name: stem thickness alt_id: TO:0000535 def: "Thickness of the stem." [GR:pj] synonym: "culm thickness" RELATED [] synonym: "culm thickness (sensu Poaceae)" RELATED [] synonym: "CULMTH" RELATED [] synonym: "STEMTH" RELATED [] is_a: TO:0000051 ! stem strength intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0000340 name: total soluble sugar content def: "Total amount of soluble sugar present in the plant or plant part." [GR:pj] synonym: "TSOLSUGARCN" RELATED [] is_a: TO:0000333 ! sugar content [Term] id: TO:0000341 name: plant genetic trait alt_id: TO:0000005 def: "OBSOLETE. A plant genetic trait is a distinguishable feature or a characteristic or a quality of character or a phenotypic feature of a developing or developed plant species which is genetically linked to a physical or genetic marker" [GR:pj] synonym: "obsolete trait term" RELATED [] is_obsolete: true [Term] id: TO:0000342 name: panicle axis angle def: "Represents the angle of panicle axis." [IRRI:SES] synonym: "PnAk" RELATED [] is_a: TO:0000270 ! inflorescence axis angle [Term] id: TO:0000343 name: grass weed def: "A common grass weed Echinochloa glabbrescens or Echinochloa crus-galli (Barnyard grass), Typha spp. (Cattails), Leptochloa fascicularis (Bearded sprangletop) grows as a weed in the rice field. Can be distinguished from rice plant by the leaf shape, venation, stem cross-section and plant shape leaf shape." [GR:pj, ISBN:9712200299, www:http//www.ipm.ucdavis.edu/PMG/r682700999.html] is_a: TO:0000347 ! weed damage [Term] id: TO:0000344 name: days to flowering trait def: "A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)." [GR:pj, TO:cooperl] comment: Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower. synonym: "days to flowering" EXACT [] synonym: "Delay in flowering time" NARROW [] synonym: "DTFL" RELATED [] xref: TO_GIT:269 is_a: TO:0002616 ! flowering time trait [Term] id: TO:0000345 name: seed viability synonym: "SDVIA" RELATED [] is_a: TO:0000931 ! seed quality trait intersection_of: PATO:0000169 ! viability intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000346 name: tiller number def: "Number of tillers per plant, should represent most plants within a study." [ICIS:1068, IRRI:SES] synonym: "TINB" RELATED [] is_a: TO:0000739 ! shoot axis morphology trait relationship: part_of TO:0000027 ! culm number [Term] id: TO:0000347 name: weed damage def: "Weeds reduce the yield regardless of planting season. They compete for sunlight, nutrients and water. If any of these is lacking, the others cannot be used effectively, even if a lot are present. Thus, the competition results in poor plant growth and less yield." [GR:pj, ISBN:9712200299] is_a: TO:0000236 ! crop damage resistance [Term] id: TO:0000348 name: sogatodes resistance def: "Causal agent: Sogatodes orizicola (Muir), Sagotella furcifera and Sogatodes cubanus. Sogatodes orizicola is also a vector for the Rice black streaked dwarf fijivirus and rice hoja blanca virus (RHBV)." [GR:pj] synonym: "SAGRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000350 name: cms-hl type def: "Abortion of microspore development at bi-nucleate stage." [GR:pj, IRRI:SES] synonym: "CMS-HL" RELATED [] synonym: "HLCMS" RELATED [] is_a: TO:0000232 ! rice cytoplasmic male sterility is_a: TO:0000415 ! aborted bi-nucleate stage [Term] id: TO:0000351 name: zinc sensitivity def: "Sensitivity to the zinc content in the growth medium. It acts as cofactor for certain enzymes like Class II aldolases, metalloproteases, alkaline phosphatase, etc." [GR:pj, ICIS:1217, IRRI:SES] synonym: "PDef" RELATED [] synonym: "zinc deficiency" RELATED [] synonym: "ZNSN" RELATED [] is_a: TO:0000080 ! micronutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27363 ! zinc atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000352 name: plant dry weight def: "The dry weight of the whole plant." [GR:pj37] synonym: "DMASS" RELATED [] synonym: "dry mass" RELATED [] synonym: "PTDWT" RELATED [] synonym: "RTWT" RELATED [] synonym: "total dry mass" RELATED [] is_a: TO:0000327 ! shoot system yield trait [Term] id: TO:0000353 name: aborted at pollen maturity stage def: "Abortion at later stage of microspore development, the pollen looks like fertile pollen." [GR:pj, IRRI:SES] synonym: "PMTABR" RELATED [] is_a: TO:0000218 ! pollen abortion type [Term] id: TO:0000354 name: aluminum sensitivity def: "Sensitivity to aluminum content in the growth media." [GR:pj] synonym: "ALSN" RELATED [] synonym: "aluminum toxicity" RELATED [] is_a: TO:0000247 ! other nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:28984 ! aluminium atom intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000355 name: heterosis def: "Exceptional vigor of growth etc. in plants or in animal, resulting from cross breeding among inter or intra species." [GR:pj, ICIS:1011] synonym: "HET" RELATED [] synonym: "heterosis in f1 hybrid" RELATED [] synonym: "hybrid vigor" RELATED [] is_a: TO:0000250 ! vigor related trait is_a: TO:0000371 ! yield trait [Term] id: TO:0000356 name: brown spot disease resistance def: "Causal agent: Cochliobolus miyabeanus (Bipolaris oryzae, Drechslera oryzae). Symptom: typical leaf spots are small, oval or circular and dark brown. Larger lesions usually have same color on the edges but have a pale (usually grayish) center. Most spots have a light yellow halo around the outer edge." [GR:pj, ICIS:1105, IRRI:SES] synonym: "BS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000357 name: plant growth and development trait def: "A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575)." [GR:pj, TO:cooperl] comment: Growth and development traits are qualities of the development of the whole plant or plant parts. xref: GO:0032502 xref: GO:0048590 xref: TO_GIT:248 is_a: TO:0000387 ! plant trait created_by: jaiswalp [Term] id: TO:0000358 name: female sterility synonym: "FEMST" RELATED [] is_a: TO:0000485 ! sterility related trait [Term] id: TO:0000359 name: female flowering def: "A flowering time trait which is the timing of the flowering (anthesis) of female flowers." [GR:pj] comment: Ofetn influenced by the environemnt that includes, day light, temperature and geographic location. synonym: "days to silk" RELATED [] synonym: "DTSLK" RELATED [] synonym: "Female flower anthesis" RELATED [] synonym: "Female flower flowering" RELATED [] synonym: "FEMFLW" RELATED [] synonym: "FFLW" RELATED [] is_a: TO:0002616 ! flowering time trait [Term] id: TO:0000360 name: leaf elongation rate def: "Measure of growth or elongation rate of the leaf in a plant." [GR:pj] synonym: "leaf growth rate" RELATED [] synonym: "LFELRATE" RELATED [] is_a: TO:0000655 ! leaf growth and development trait [Term] id: TO:0000361 name: stem morphology trait def: "A shoot axis morphology trait (TO:0000739) which is the quality of a stem (PO:0009047)." [GR:pj, PO:0009047, TO:moorel] synonym: "core morphology trait " NARROW [] xref: TO_GIT:157 is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0000362 name: rot disease def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000364 name: leaf collar color def: "Changes monitored in leaf collar color." [IRRI:SES] synonym: "CC" RELATED [] synonym: "collar color" RELATED [] synonym: "LFCCL" RELATED [] intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0006012 ! leaf collar relationship: part_of TO:0000326 ! leaf color [Term] id: TO:0000365 name: male flowering def: "A flowering time trait (TO:0002616) which is the timing of the flowering (anthesis) of male flowers." [GR:pj] comment: Often influenced by the environment that includes, daylight, temperature and geographic location. synonym: "male flower anthesis" RELATED [] synonym: "male flower flowering" RELATED [] synonym: "MALEFLW" RELATED [] synonym: "MFLW" RELATED [] is_a: TO:0002616 ! flowering time trait [Term] id: TO:0000366 name: reproductive growth time def: "Measure of time taken by the reproductive growth phase in a plant's life cycle." [GR:pj] synonym: "RGTM" RELATED [] is_a: TO:0000933 ! plant phenological trait [Term] id: TO:0000367 name: basal leaf sheath color def: "The changes in the color of basal leaf sheath." [ICIS:1306, IRRI:SES] synonym: "BALFSCL" RELATED [] synonym: "BLSC" RELATED [] is_a: TO:0002724 ! leaf sheath color [Term] id: TO:0000368 name: shoot elongation rate synonym: "elongation of plant height" RELATED [] synonym: "SHELRATE" RELATED [] is_a: TO:0000654 ! shoot system growth and development trait [Term] id: TO:0000369 name: vegetative growth time def: "Measure of the vegetative growth phase time in a plant's life cycle." [GR:pj] synonym: "VGTM" RELATED [] is_a: TO:0000933 ! plant phenological trait [Term] id: TO:0000370 name: leaf width def: "A leaf size (TO:0002637) trait which the width of a leaf (PO:0025034)." [ICIS:1308, IRRI:SES, PO:0025034, TO:cooperl, TO:moorel] comment: Actual measurements, in centimeters of the widest portion of the leaf. To be precise use the children terms leaf lamina width (TO:0002720) or 'leaf sheath width (TO:0002721). Refers to width (PATO:0000921) A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFWD" RELATED [] synonym: "lfwid" RELATED [MaizeGDB_QTL:61714] synonym: "LW" RELATED [] xref: MaizeGDB_QTL:61714 xref: PATO:0000921 xref: TO_GIT:247 is_a: TO:0002637 ! leaf size intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000371 name: yield trait def: "A plant trait (TO:0000387) which is a harvestable product that is a plant anatomical entity (PO:0025131) or one or more constituent cellular components (GO:0005575) contained therein." [GR:pj, TO:cooperl] synonym: "YLD" RELATED [] is_a: TO:0000387 ! plant trait [Term] id: TO:0000372 name: amylose to amylopectin ratio def: "Ratio of amount of amylose to amylopectin content." [GR:pj] synonym: "AMYAMYPCTRO" RELATED [] is_a: TO:0006007 ! polysaccharide content intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in CHEBI:28102 ! amylose intersection_of: relative_to CHEBI:28057 ! amylopectin [Term] id: TO:0000373 name: inflorescence morphology trait alt_id: TO:0000363 alt_id: TO:0000584 alt_id: TO:0000585 def: "A reproductive shoot system morphology trait (TO:0000786) that is a quality of an inflorescence (PO:0009049)." [GR:pj, PO:0009049] synonym: "Head morphology trait" NARROW [] synonym: "inflorescence structure trait" RELATED [] xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000786 ! reproductive shoot system morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000374 name: breakdown viscosity synonym: "BRKVIS" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000375 name: brown rice ratio def: "A grain length to width ratio (TO:0002731) which is determined from grain length and grain width on dehulled unpolished rice grain." [GR:pj, TO:moorel] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. synonym: "brown rice length to width ratio" RELATED [] synonym: "BRWRRO" RELATED [] xref: PATO:0000117 xref: PATO:0000122 xref: PATO:0000921 is_a: TO:0002731 ! grain length to width ratio [Term] id: TO:0000376 name: consistency viscosity synonym: "CONVIS" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000377 name: cooked grain elongation synonym: "CKKEL" RELATED [] synonym: "cooked kernel elongation" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000378 name: leaf scald disease resistance def: "Causal agent: Monographella albescens (Microdochium oryzae). Symptoms: the lesions occurs mostly near leaf tips, but sometimes start at the margin of the blade and develops into large ellipsoid areas encircled by dark-brown, narrow bands accompanied by a light-brown halo." [GR:pj, ICIS:1110, IRRI:SES] synonym: "LFSRS" RELATED [] synonym: "LSc" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000379 name: cool paste viscosity synonym: "CPVIS" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000380 name: planthopper def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000381 name: cracked grain percentage def: "The percentage of cracked dehulled grain with most of the size still intact." [GR:pj] synonym: "CRKGRPCENT" RELATED [] synonym: "fissured grain percentage" RELATED [] is_a: TO:0000162 ! grain quality trait [Term] id: TO:0000382 name: 1000-seed weight alt_id: TO:0000533 def: "Measurements in grams of 1000 well-developed whole grains (seeds with the hull), dried to 13% moisture content, weight on a precision balance." [GR:pj] synonym: "1000-grain weight" RELATED [] synonym: "TGRWT" RELATED [] synonym: "thousand grain weight" RELATED [] synonym: "thousand seed weight" RELATED [] synonym: "TSDWT" RELATED [] is_a: TO:0000181 ! seed weight [Term] id: TO:0000383 name: grain belly percent white def: "Percentage opaque white area in the kernel belly." [GR:pj] synonym: "GRBPCENTWHT" RELATED [] is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000384 name: nematode damage resistance def: "An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to nematode infestation as compared to the susceptible and/or the reference plants of the same species." [GR:pj] synonym: "NDRS" RELATED [] is_a: TO:0000054 ! animal damage resistance [Term] id: TO:0000385 name: milled grain color def: "A fruit color (TO:0002617) trait which is the color of dehulled, milled grain, which does not have pericarp (PO:0009084)." [GR:pj, PO:0009084, TO:moorel] comment: For color of the dehulled grain, see pericarp color (TO:0000707). Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "GRCL" RELATED [] synonym: "MGRCL" RELATED [] xref: PATO:0000014 is_a: TO:0002617 ! fruit color [Term] id: TO:0000386 name: rice ragged stunt virus resistance def: "Causal agent: rice ragged stunt virus (RRSV). Symptoms: plants are stunted but remain dark green. Leaves are ragged and twisted. Vein swelling on leaf collar, leaf blades and leaf sheaths." [GR:pj, ICIS:1112, IRRI:SES] synonym: "RSVRS" RELATED [] is_a: TO:0000148 ! viral disease resistance intersection_of: PATO:0001046 ! resistance to intersection_of: inheres_in EO:0007195 ! rice ragged stunt virus intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000387 name: plant trait def: "A measurable or observable characteristic of a cellular component (GO:0005575), biological process (GO:0008150) or molecular function (GO:0003674) that is part of, or has participant a plant anatomical entity (PO:0025131) and/or a plant structure development stage (PO:0009012)." [GO:0003674, GO:0005575, GO:0008150, GR:pj, PO:0009012, PO:0025131, TO:cooperl] comment: This includes physiological, molecular and biochemical traits as well. synonym: "plant phenotype" RELATED [] synonym: "plant quality" RELATED [] xref: TO_GIT:52 created_by: jaiswalp [Term] id: TO:0000388 name: forage yield def: "Yield of forage matter upon harvest." [GR:pj] synonym: "FRGYLD" RELATED [] synonym: "FY" RELATED [] synonym: "straw yield" RELATED [] is_a: TO:0000327 ! shoot system yield trait [Term] id: TO:0000389 name: nuclear mediated male sterility def: "Shows mendelian inheritance, caused by genetic modifications or mutations in the nuclear genome." [GR:pj, IRRI:SES] xref: scale:6 is_a: TO:0000106 ! male sterility type [Term] id: TO:0000390 name: grain core percent white def: "Percentage opaque white area in the kernel core." [GR:pj] synonym: "GRCPCENTWHT" RELATED [] is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000391 name: seed size def: "A seed morphology trait (TO:0000184) which is the size of a seed (PO:0009010)." [GR:pj, ICIS:1302, PO:0009010, TO:cooperl] comment: Seed size is determined by the ratio of the seed length to seed width and is a component of seed quality (TO:0000162). Seed size may be a qualitative measure or may be organized into categories ranging from small to medium to large. Refers to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 xref: TO_GIT:183 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009010 ! seed relationship: has_part TO:0000931 ! seed quality trait [Term] id: TO:0000392 name: sterility or fertility trait def: " A plant trait (TO:0000387) which is a measure of either the fertility or sterility, contributed by nonfunctional male and or female plant parts or their incompatible interaction. This also includes traits on seed setting behavior in the fruit (caryopsis) of a grass plant that can be assayed in terms of spikelet sterility or fertility." [GR:pj] is_a: TO:0000387 ! plant trait [Term] id: TO:0000393 name: yield and yield component def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000394 name: drought related trait def: "Response by the plant in terms of sensitivity to sufficiently prolonged water deficit/scarcity or scanty water content in the soil or growth medium, that can cause damage to the plant." [GR:pj] synonym: "dessication related trait" RELATED [] is_a: TO:0000237 ! water stress trait [Term] id: TO:0000396 name: grain yield trait def: "A fruit yield trait (TO:0000871) that is the amount of grain." [ICIS:1003, IRRI:SES, TO:contributors, TO:cooperl] comment: In rice, the grain yield is often measured in kilograms per hectare at 14 percent moisture, if the experiment was done on a field trial. synonym: "GRYLD" RELATED [] synonym: "Yld" RELATED [] xref: TO_GIT:242 is_a: TO:0000871 ! fruit yield trait [Term] id: TO:0000397 name: grain size def: "A fruit size (TO:0002625) which is the size of a dehulled, milled grain without pericarp (PO:0009084)." [GR:pj, PO:0009084, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. synonym: "GRSZ" RELATED [] is_a: TO:0002625 ! fruit size [Term] id: TO:0000398 name: whole plant morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a whole plant (PO:0000003)." [PO:0000003, TO:cooperl] is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0000003 ! whole plant [Term] id: TO:0000399 name: grain thickness def: "A grain quality trait (TO:0000399) which is the thickness of a dehulled grain with a pericarp (PO:0009084)." [GR:pj, PO:0009084, TO:moorel] synonym: "GRTH" RELATED [] xref: TO_GIT:264 is_a: TO:0000162 ! grain quality trait relationship: part_of TO:0000397 ! grain size [Term] id: TO:0000400 name: sterile lemma color def: "A lemma and palea morphology trait (TO:0000079) which is the color of the sterile lemma (PO:0009040)." [IRRI:SES, PO:0009040, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "SLmC" RELATED [] synonym: "STLEMCL" RELATED [] xref: PATO:0000014 is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009040 ! sterile lemma relationship: inheres_in PO:0009040 {is_inferred="true"} ! sterile lemma [Term] id: TO:0000401 name: plant growth hormone sensitivity def: "A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the plant growth hormone." [POC:Cooperl] synonym: "growth regulator sensitivity" RELATED [] synonym: "plant hormone response" RELATED [] is_a: TO:0000482 ! chemical stress sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:37848 ! plant hormone [Term] id: TO:0000402 name: dehulled grain width def: "A grain width (TO:0000975) which is the width of the dehulled grain with pericarp (PO:0009084)." [GR:pj, PO:0009084, TO:moorel] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "dehulled grain curved width" RELATED [] synonym: "dehulled-grain width" RELATED [] synonym: "DHULGRWD" RELATED [] synonym: "GRWD" RELATED [] synonym: "width of grain without hull" RELATED [] xref: PATO:0000921 xref: TO_GIT:123 is_a: TO:0000975 ! grain width [Term] id: TO:0000403 name: leaf-folder resistance def: "Causal agent: Cnaphalocrosis medinalis, Marasmia patnalis. Symptoms: larvae consume the leaf tissue except the epidermis, causing typical white streaks. They create a leaf tube during later stages of feeding. Plant is susceptible and resistant check (if available) after every 10-test entries. Replicate the test three times, if seed is available. Determined by percentage of damaged and folded leaves." [GR:pj, ICIS:1157, IRRI:SES] synonym: "LF" RELATED [] synonym: "LFFRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000404 name: nodal rooting def: "Extent of rooting from the nodes on a stem." [GR:pj] is_a: TO:0000361 ! stem morphology trait is_a: TO:0000656 ! root development trait [Term] id: TO:0000405 name: caseworm resistance def: "Causal agent: Nymphula depunctalis. Symptoms: Larvae feed on leaf tissue, leaving only the papery upper epidermis." [GR:pj, ICIS:1153, IRRI:SES] synonym: "CW" RELATED [] synonym: "CWRS" RELATED [] synonym: "float worm" RELATED [] synonym: "hama putih (indonesian)" RELATED [] synonym: "paddy caseworm" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000406 name: panicle threshability def: "A panicle morphology trait (TO:0000847) which is the percentage of shattered grains, determined by firmly grasping and pulling the hand over the panicle." [ICIS:1008, IRRI:SES] synonym: "PNTH" RELATED [] synonym: "Thr" RELATED [] is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000407 name: hoppers def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000408 name: hot paste viscosity synonym: "HPVIS" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000409 name: peak viscosity synonym: "PVIS" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000410 name: polished rice protein content def: "Total protein content of the polished rice." [GR:pj] synonym: "POLRPROTCN" RELATED [] is_a: TO:0000490 ! seed protein composition trait is_a: TO:0000598 ! protein content [Term] id: TO:0000411 name: seed length to width ratio def: "Ratio of length to width of the seed or fruit caryopsis with hull." [GR:pj] synonym: "grain length to width ratio" RELATED [] synonym: "GRLGWDRO" RELATED [] synonym: "SDLGWDRO" RELATED [] is_a: TO:0000146 ! seed length intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in PATO:0000122 ! length intersection_of: occurs_in PO:0009010 ! seed intersection_of: relative_to PATO:0000921 ! width [Term] id: TO:0000412 name: setback viscosity def: "Determined by deducting the peak viscosity from the cool paste viscosity." [GR:pj37] synonym: "setback" RELATED [] synonym: "SETBK" RELATED [] synonym: "SETBKVIS" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000413 name: rice tungro virus resistance def: "Causal agent: Rice tungro bacilliform virus (RTBV) and rice tungro spherical virus (RTSV). The disease is transmitted by the green leafhopper Nephotettix spp. Symptoms: Yellow-to-yellow orange leaves, stunting and slightly reduced tillering." [GR:pj, ICIS:1113, IRRI:SES, web:http//www.fao.org/inpho/vlibrary/t0567e/T0567E03.htm] synonym: "RTD" RELATED [] synonym: "RTVRS" RELATED [] is_a: TO:0000148 ! viral disease resistance [Term] id: TO:0000414 name: white rice protein content synonym: "polished rice protein" RELATED [] synonym: "protein content for polished rice" RELATED [] synonym: "WHTRPROTCN" RELATED [] is_a: TO:0000490 ! seed protein composition trait is_a: TO:0000598 ! protein content [Term] id: TO:0000415 name: aborted bi-nucleate stage def: "Abortion at bi-nucleate stage of microspore development." [GR:pj, IRRI:SES] comment: An example is CMS-HL in rice. synonym: "BNUABR" RELATED [] is_a: TO:0000218 ! pollen abortion type [Term] id: TO:0000416 name: embryo sac abortion def: "Abortion of the embryo sac leading to female sterility." [GR:pj] synonym: "EBSABR" RELATED [] is_a: TO:0000358 ! female sterility [Term] id: TO:0000417 name: lemma and palea pubescence def: "A lemma and palea morphology trait (TO:0000079) which is the extent of pubescence (hairs) on the lemma (PO:0009037) and palea (PO:0009038)." [IRRI:SES, PO:0009037, PO:0009038, TO:moorel] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. synonym: "LmPb" RELATED [] xref: PATO:0001320 is_a: TO:0000079 ! flower bract morphology trait intersection_of: PATO:0001320 ! pubescent hair intersection_of: inheres_in PO:0009034 ! flower bract [Term] id: TO:0000418 name: bakanae disease resistance def: "Causal agent: Gibberella fujikuroi. Symptoms: the plant elongates abnormally, has few tillers and usually dies before producing grains." [GR:pj, IRRI:SES] synonym: "Bak" RELATED [] synonym: "BKRS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000419 name: vascular leaf morphology trait def: "A leaf morphology trait (TO:0000748) which is a quality of a vascular leaf (PO:0009025)." [GR:pj, PO:0009025, TO:cooperl] xref: TO_GIT:60 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009025 ! vascular leaf created_by: jaiswalp [Term] id: TO:0000420 name: fertility related trait is_a: TO:0000392 ! sterility or fertility trait intersection_of: PATO:0000274 ! fertility intersection_of: inheres_in PO:0009011 ! plant structure [Term] id: TO:0000421 name: pollen fertility synonym: "POFRT" RELATED [] is_a: TO:0000420 ! fertility related trait intersection_of: PATO:0000274 ! fertility intersection_of: inheres_in PO:0025281 ! pollen [Term] id: TO:0000422 name: narrow brown leaf spot disease resistance def: "Causal agent: Sphaerulina oryzina (Cercospora janseana)." [GR:pj, ICIS:1111, IRRI:SES] synonym: "NBLFSPRS" RELATED [] synonym: "NBLS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000423 name: gall midge resistance def: "Causal agent: Orseolia oryzae. For the field test to be valid more than 60% of the plants should be affected with not less than 15% silver shoot in the susceptible check. Similarly, 60% of the plants in susceptible check should show silver shoots under green house tests. If any of the test entry in the field evaluation exhibits damage less than 10%, on plant basis, rate it on scale-0, since such a damage could be due to other reasons. Monitor at growth stage 2-5." [ICIS:1155, IRRI:SES] synonym: "GM" RELATED [] synonym: "GMRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000424 name: brown planthopper resistance def: "Causal agent: Nilparvata lugens (also Nilaparvata lugens). Symptoms: partial to pronounced yellowing and increasing severity of stunting. Extreme signs are wilting to death of plants. Infested areas in the field may be patchy." [GR:pj, ICIS:1152, IRRI:SES] synonym: "BPH" RELATED [] synonym: "BPHRS" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000425 name: anther culturability synonym: "ANTCAB" RELATED [] synonym: "anther culture response" RELATED [] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000426 name: stem internode color def: "A stem internode morphology trait (TO:0000756) which is the color of the stem internode (PO:0020142)." [ICIS:1064, IRRI:SES, TO:cooperl] synonym: "CmlC" RELATED [] synonym: "culm internode color" RELATED [] synonym: "INCL" RELATED [] xref: TO_GIT:317 xref: TO_GIT:64 is_a: TO:0000756 ! stem internode morphology trait relationship: part_of TO:0000056 ! stem color [Term] id: TO:0000427 name: culm angle def: "The angle of the culm with respect to the ground surface in a grass plant." [IRRI:SES] synonym: "CmA" RELATED [] synonym: "CULMAG" RELATED [] is_a: TO:0000577 ! stem angle [Term] id: TO:0000428 name: callus induction synonym: "CAIND" RELATED [] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000429 name: salt sensitivity def: "Plant sensitivity observed in response to different concentrations of salt in the growth medium." [ICIS:1214, IRRI:SES] synonym: "Sal" RELATED [] synonym: "saline sensitivity" RELATED [] synonym: "SALTSN" RELATED [] is_a: TO:0000480 ! nutrient sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:24866 ! salt intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000430 name: germination rate def: "Rate of germination of the seed." [GR:pj] synonym: "germination speed" RELATED [] synonym: "GERMRATE" RELATED [] synonym: "GERMSP" RELATED [] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000431 name: ear length def: "An ear infructescence morphology trait (TO:0000976) that is the length of an ear infructescence (PO:0025597) from base to tip." [TO:cooperl] comment: Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. In maize, this is measured in centimeters. subset: Zea_mays synonym: "ear infructescence length" EXACT [] synonym: "EARLG" RELATED [] synonym: "earln" RELATED [MaizeGDB_QTL:78112] xref: MaizeGDB_QTL:78112 xref: PATO:0000122 xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025597 ! ear infructescence [Term] id: TO:0000432 name: temperature response trait def: "Response by the plant in terms of sensitivity to temperature stress." [GR:pj] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000433 name: ear diameter def: "An ear infructescence morphology trait (TO:0000976) that is the diameter of an ear infructescence (PO:0025597)." [GR:pj37, TO:cooperl] comment: Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters. subset: Zea_mays synonym: "ear infructescence diameter" EXACT [] synonym: "eard" RELATED [MaizeGDB_QTL:78113] synonym: "EARDIA" RELATED [] xref: MaizeGDB_QTL:78113 xref: PATO:0001334 xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0025597 ! ear infructescence [Term] id: TO:0000434 name: root activity synonym: "RTACT" RELATED [] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000435 name: seed longevity synonym: "SDLNG" RELATED [] is_a: TO:0000345 ! seed viability [Term] id: TO:0000436 name: spikelet sterility def: "Determined by counting the filled and unfilled spikelets of the bagged grass inflorescence." [GR:pj, IRRI:SES] synonym: "SPKST" RELATED [] is_a: TO:0000485 ! sterility related trait [Term] id: TO:0000437 name: male sterility def: "In plants, it represents the incompetence of the pollen to fertilize the ovum. Reasons could be non-viable pollen, incompatibility, pollen abortion, toxicity, genetic etc. Usually determined by either the pollen sterility or spikelet fertility (percent seed set)." [GR:pj] synonym: "degree of male sterility of male sterile lines" RELATED [] synonym: "male sterility measure" RELATED [] synonym: "MALEST" RELATED [] is_a: TO:0000485 ! sterility related trait [Term] id: TO:0000439 name: fungal disease resistance def: "The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a fungal pathogen infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj] comment: It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular fungal strain causing the disease. is_a: TO:0000112 ! disease resistance [Term] id: TO:0000440 name: grain number per plant def: "Number of grains (full grain with hull) present in one plant." [GR:pj37] synonym: "GRNBPPT" RELATED [] is_a: TO:0002759 ! grain number [Term] id: TO:0000441 name: humidity related trait is_a: TO:0000237 ! water stress trait [Term] id: TO:0000442 name: plant fresh weight def: "Fresh weight of the plant." [GR:pj37] synonym: "PLFWT" RELATED [] is_a: TO:0000327 ! shoot system yield trait [Term] id: TO:0000443 name: ear infructescence number def: "An infructescence yield trait (TO:0000936) that is the number of ears (ear infructescence; PO:0025597) on a plant or the average number present in population." [GR:pj, TO:cooperl] comment: To be used only for traits from maize. synonym: "ear number per plant" RELATED [] synonym: "EARNB" RELATED [] synonym: "ears per 10 plants" RELATED [] synonym: "ears per plant" RELATED [] synonym: "ENO" RELATED [] synonym: "ENP" RELATED [] xref: TO_GIT:244 is_a: TO:0000936 ! infructescence yield trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0020136 ! ear inflorescence [Term] id: TO:0000444 name: parasitic weed is_a: TO:0000347 ! weed damage [Term] id: TO:0000445 name: fruit seed number alt_id: TO:0000139 def: "A fruit morphology trait (TO:0002629) which is the number of seeds (PO:0009010) in a fruit (PO:0009001)." [GR:pj, PO:0009001, PO:0009010, PO:0009049] synonym: "SDNB" RELATED [] is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009010 ! seed intersection_of: occurs_in PO:0009001 ! fruit [Term] id: TO:0000446 name: leaf drying def: "A leaf morphology trait (TO:0000748) which is the drying of a leaf (PO:0025034)." [PO:0025034, TO:cooperl, TO:moorel] comment: May be a response to abiotic stress. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFDRY" RELATED [] is_a: TO:0000748 ! leaf morphology trait [Term] id: TO:0000447 name: filled grain number alt_id: TO:0000438 def: "Determined by counting the number of spikelets filled with grain in one inflorescence (panicle)." [GR:pj] comment: Another trait seed number (TO:0000445) is directly associated with it. synonym: "FGRNB" EXACT [] synonym: "FILGRNB" RELATED [] synonym: "filled fruit number" RELATED [] synonym: "filled grain number per panicle" EXACT [] synonym: "grain number per panicle (sensu Oryza)" RELATED [] synonym: "GRNBPPN" RELATED [] synonym: "number of grains per panicle" EXACT [] is_a: TO:0002759 ! grain number [Term] id: TO:0000448 name: filled grain percentage def: "Determined by counting the percent spikelets filled with grain in one grass inflorescence (panicle) or plant." [GR:pj] synonym: "FGRPCENT" RELATED [] synonym: "Filled grain percent per panicle" RELATED [] is_a: TO:0002759 ! grain number [Term] id: TO:0000449 name: grain yield per plant def: "Average weight of dehulled grains per plant." [GR:pj] synonym: "GRYLDPPL" RELATED [] is_a: TO:0000396 ! grain yield trait [Term] id: TO:0000450 name: grain yield per panicle def: "Average weight of dehulled grains per panicle." [GR:pj] synonym: "GRYLDPPN" EXACT [] is_a: TO:0000396 ! grain yield trait [Term] id: TO:0000451 name: large vascular bundle number to spikelet number ratio def: "A ratio of number of large vascular bundles present in the spikelets to the number of spikelets in a grass inflorescence." [GR:pj] synonym: "LVBNBSPKNBRO" RELATED [] is_a: TO:0000456 ! spikelet number is_a: TO:0000472 ! vascular bundle number [Term] id: TO:0000452 name: leaf area to spikelet number ratio def: "A ratio of leaf area to the number of spikelets in a grass inflorescence." [GR:pj] comment: Often measured using the flag leaf. synonym: "LFARSPKNBRO" RELATED [] is_a: TO:0000540 ! leaf area trait intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in TO:0000540 ! leaf area trait intersection_of: relative_to TO:0000456 ! spikelet number [Term] id: TO:0000453 name: panicle to tiller ratio def: "A ratio of number of tiller bearing the panicles to the total number of tillers in rice." [GR:pj] comment: Not all the tillers bear panicle. synonym: "panicle tiller ratio" RELATED [] synonym: "PNTIRO" RELATED [] synonym: "productive tiller percent" RELATED [] is_a: TO:0000371 ! yield trait [Term] id: TO:0000454 name: stem borer resistance def: "Causal agents: Chilo suppressalis (striped), C. polychrysus (dark headed), Rupela albinella (South American white), Scirpophaga incertulas (yellow), S innotata (white), Sesamia inferens (pink), Maliarpha separatella (african whiteheads), Diopsis macrophthalma (stalked-eyed fly), and several other species." [GR:pj, ICIS:1164, IRRI:SES] synonym: "CULMBRRS" RELATED [] synonym: "SB" RELATED [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0000455 name: seed set percent def: "An infructescence morphology trait (TO:0000920) which is the percent of seeds (PO:0009010) set in an infructescence (PO:0006342)." [] synonym: "percent seed set" RELATED [] synonym: "SDSPCENT" RELATED [] is_a: TO:0000920 ! infructescence morphology trait [Term] id: TO:0000456 name: spikelet number def: "A spikelet morphology trait (TO:0000657) which is the average number of spikelets (PO:0009051) in one or more inflorescence (PO:0009049) (e.g. rice panicle) found in a plant or on all plants of a study." [GR:pj, PO:0009049, PO:0009051, TO:moorel] synonym: "number of spikelets per panicle" RELATED [] synonym: "spikelet number per panicle" RELATED [] synonym: "SPKNB" RELATED [] is_a: TO:0000371 ! yield trait is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0000457 name: total biomass yield synonym: "dry matter yield" RELATED [] synonym: "TBIOMYLD" RELATED [] synonym: "total dry weight" RELATED [] is_a: TO:0000327 ! shoot system yield trait [Term] id: TO:0000458 name: drought recovery def: "Scores are taken after 10 days following soaking rain or watering- Indicate the degree of stress before recovery." [IRRI:SES] synonym: "DRR" RELATED [] is_a: TO:0000394 ! drought related trait [Term] id: TO:0000459 name: root epidermis cell length def: "Length of the root epidermal cell length." [GR:pj37] synonym: "RTEPCELLG" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0020107 ! plant cell length [Term] id: TO:0000460 name: light intensity sensitivity synonym: "light intensity response" RELATED [] is_a: TO:0000075 ! light sensitivity [Term] id: TO:0000461 name: basic vegetative phase synonym: "BAVEGPH" RELATED [] is_a: TO:0000369 ! vegetative growth time [Term] id: TO:0000462 name: gelatinization temperature def: "Is an indication of gelatinization temperature. Observed by placing six milled-grains/kernels in 10ml 1.7% KOH in a shallow container and arrange them so that they do not touch. Let them stand for 23hrs at 30C temperature and score for spreading. Measure for Alkali digestion is inversely proportional to the gelatinization temperature, e.g. if alkali digestion is low, the gelatinization temperature is high." [GR:pj, ICIS:1256, IRRI:SES] synonym: "GELTZTMP" RELATED [] is_a: TO:0000489 ! carbohydrate composition related trait is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000463 name: anthesis silking interval def: "A difference of the average number of days between the maize tassel flowering and the first visible silk (stigma) on the maize ear." [GR:pj] synonym: "ANTSKIT" RELATED [] synonym: "ASI" RELATED [] synonym: "FLWSLKINTER" RELATED [] xref: MaizeGDB_QTL:62044 is_a: TO:0002616 ! flowering time trait [Term] id: TO:0000464 name: albino plantlet differentiation frequency synonym: "ALBPTLDFQ" RELATED [] is_a: TO:0000357 ! plant growth and development trait [Term] id: TO:0000465 name: mineral and ion content related trait def: "A biochemical trait (TO:0000277) that is the amount of a particular mineral or ion constituent occurring in a plant anatomical entity (PO:0025131)." [GR:pj] comment: May be measured in a dry mass or in a fresh tissue. is_a: TO:0000277 ! biochemical trait created_by: jaiswalp [Term] id: TO:0000466 name: carbon content def: "Amount of carbon present in the dry mass." [GR:pj] synonym: "CBCN" RELATED [] is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000070 ! amount intersection_of: inheres_in CHEBI:27594 ! carbon atom [Term] id: TO:0000467 name: cell membrane stability def: "Stability of the cell membrane under the impact of temperature (heat) and water deficit stress." [GR:pj, web:http\://www.plantstress.com/methods/CMS_method.htm] comment: The trait is often observed in plants as a measure of drought and heat tolerance by determining the amount of solutes/electrolyte leaked from the cell. synonym: "CELMBSTB" RELATED [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000468 name: leaf blast disease resistance def: "Causal agent: Magnaporthe grisea. Symptoms: Can affect either or both the leaf and panicles." [GR:pj, IRRI:SES] synonym: "Bl" RELATED [] synonym: "LFBLRS" RELATED [] is_a: TO:0000074 ! blast disease resistance [Term] id: TO:0000469 name: days to maturity def: "Number of days required from seeding to seed/grain ripening ." [ICIS:1012, IRRI:SES] synonym: "DTMT" RELATED [] synonym: "Mat" RELATED [] is_a: TO:0000653 ! seed growth and development trait [Term] id: TO:0000470 name: vascular tissue morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of a vascular tissue and its parts." [GR:pj, TO:moorel] is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009015 ! portion of vascular tissue [Term] id: TO:0000471 name: root penetration index def: "Its the fraction of number of penetrated roots over the total number of roots." [GR:jcl, GR:pj] synonym: "RTPNID" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000472 name: vascular bundle number def: "Number of vascular bundles present in a plant part." [GR:pj] synonym: "VBNB" RELATED [] is_a: TO:0020109 ! vascular bundle development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0005020 ! vascular bundle [Term] id: TO:0000473 name: grain shattering def: "Measurement of extent of grain shattering, which depends on development of abscission zone. This trait often refers to shattering or the premature or ease of shedding of the grass fruit called caryopsis from the inflorescence." [GR:pj] synonym: "caryopsis shattering" RELATED [] synonym: "GRSH" RELATED [] is_a: TO:0002729 ! fruit senescing quality trait [Term] id: TO:0000474 name: glume opening def: "Angle of opening of glumes is measured on each floret, assessment based on mean angle of glume opening." [GR:pj, IRRI:SES] synonym: "glume angle" RELATED [] synonym: "opening of glume of male sterile lines" RELATED [] is_a: TO:0000869 ! glume morphology trait [Term] id: TO:0000475 name: adventitious root thickness synonym: "ADVRTTH" RELATED [] is_a: TO:0000306 ! root thickness [Term] id: TO:0000476 name: growth hormone content def: "A metabolite content trait (TO:0000281) which is the amount of plant hormone (CHEBI:37848) in a plant structure (PO:0009011)." [GR:pj] xref: CHEBI:37848 is_a: TO:0000281 ! metabolite content trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:37848 ! plant hormone intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000477 name: panicle blast disease resistance def: "Causal agent: Magnaporthe grisea (Pyricularia oryzae). Symptoms are dark necrotic lesions covering partially or completely around the panicle base (node) or the uppermost internode or the lower part." [GR:pj, ICIS:1119, IRRI:SES] synonym: "PB" RELATED [] synonym: "PNBLRS" RELATED [] is_a: TO:0000074 ! blast disease resistance [Term] id: TO:0000478 name: abscisic acid concentration def: "Measures the growth hormone concentration in a plant or plant part." [GR:pj] synonym: "ABA concentration" RELATED [] synonym: "ABACONC" RELATED [] synonym: "abscisic acid accumulation" RELATED [] synonym: "abscisic acid content" RELATED [] is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:22152 ! 2-cis-abscisic acid [Term] id: TO:0000479 name: acid sensitivity def: "Plant sensitivity to an acidic (pH<7) growth media." [GR:pj, TO:moorel] synonym: "ADSN" RELATED [] is_a: TO:0000254 ! growth media pH sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:37527 ! acid intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000480 name: nutrient sensitivity def: "A growth media composition sensitivity (TO:0000238) which is the plant's response to an excess or deficient amount of the macro or micronutrient in the growth medium (soil/culture media)." [GR:pj, TO:moorel] synonym: "nutrient deficiency" RELATED [] is_a: TO:0000238 ! growth media composition sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in PLANTCHEBIROLE:01 intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000481 name: alkali sensitivity def: "Plant sensitivity to an alkali (pH>7) growth media." [GR:pj, TO:moorel] synonym: "ALKSN" RELATED [] is_a: TO:0000254 ! growth media pH sensitivity [Term] id: TO:0000482 name: chemical stress sensitivity def: "Response by the plant in terms of resistivity or senility to chemical stress." [GR:pj] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000483 name: germinability at low temperature def: "Measure of the seed's germination ability at sub-permissive temperature levels." [GR:pj] synonym: "GERMABITMP" RELATED [] synonym: "germination ability at low temperature" RELATED [] is_a: TO:0000653 ! seed growth and development trait is_a: TO:0000931 ! seed quality trait [Term] id: TO:0000484 name: seed shape def: "A seed morphology trait (TO:0000184) which is the shape of a seed (PO:0009010)." [GR:pj, PO:0009010, TO:moorel] comment: Seed shape can be a component of seed quality (TO:0000162). Refers to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "SDSHP" RELATED [] xref: PATO:0000052 xref: TO_GIT:193 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000485 name: sterility related trait is_a: TO:0000392 ! sterility or fertility trait [Term] id: TO:0000486 name: seed color def: "A seed morphology trait (TO:0000184) which is the color of a seed (PO:0009010)." [GR:pj, PO:0009019, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. In a seed this can be measured on the seed coat or the inside parts of a seed. synonym: "SDCL" RELATED [] xref: PATO:000014 xref: TO_GIT:192 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000487 name: endosperm color def: "An endosperm morphology trait (TO:0000575) which is the color of an endosperm (PO:0009089)." [GR:pj, PO:0009089, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "ENDCL" RELATED [] xref: PATO:0000014 xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000488 name: seed composition based quality trait is_a: TO:0000931 ! seed quality trait [Term] id: TO:0000489 name: carbohydrate composition related trait is_a: TO:0000488 ! seed composition based quality trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:16646 ! carbohydrate [Term] id: TO:0000490 name: seed protein composition trait def: "A seed composition based quality trait (TO:0000488) which is the amount of protein (CHEBI_36080) in a seed (PO:0009010)." [] is_a: TO:0000488 ! seed composition based quality trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:36080 ! protein intersection_of: occurs_in PO:0009010 ! seed [Term] id: TO:0000491 name: fat and essential oil composition related trait is_a: TO:0000488 ! seed composition based quality trait [Term] id: TO:0000492 name: leaf shape def: "A leaf morphology trait (TO:0000748) which is the variation in shapes and forms of a leaf (PO:0025034)." [GR:pj, PO:0025034, TO:cooperl] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFSHP" RELATED [] xref: PATO:0000052 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000493 name: leaf composition trait def: "A leaf morphology trait (TO:0000748) which is the composition of a leaf (PO:0025034)." [PO:0025034, TO:moorel] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000494 name: pigment content is_a: TO:0000493 ! leaf composition trait intersection_of: PATO:0000070 ! amount intersection_of: inheres_in CHEBI:26130 ! biological pigment [Term] id: TO:0000495 name: chlorophyll content def: "Measures the chlorophyll content in a green tissue. Includes both chlorophyll-a and chlorophyll-b. Chlorophyll is the green pigment found in plants." [GR:pj] comment: Chlorophyll is the principal photoreceptor in photosynthesis, the light-driven process in which carbon dioxide is fixed to yield carbohydrates and oxygen. Chlorophyll is a cyclic tetrapyrolle, similar in structure to the heme group of globins (hemoglobin, myoglobin) and cytochromes. Chlorophyll differs from heme in a few major respects, most notably that the central metal ion in chlorophyll is magnesium while that in heme is iron. synonym: "CHLCN" RELATED [] is_a: TO:0000674 ! phytochemical compound content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28966 ! chlorophyll [Term] id: TO:0000496 name: carotenoid content def: "The carotenoid content in a plant or plant part. Includes naturally occurring tetra terpenes that are synthesized only in plants." [] synonym: "CRTCN" RELATED [] is_a: TO:0000494 ! pigment content is_a: TO:0000674 ! phytochemical compound content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:23044 ! carotenoid [Term] id: TO:0000497 name: fertility restoration trait synonym: "RF" RELATED [] is_a: TO:0000420 ! fertility related trait [Term] id: TO:0000498 name: female fertility restoration trait def: "Describes the extent of female fertility restoration in terms of percent seed set." [GR:pj] synonym: "FEMRF" RELATED [] is_a: TO:0000497 ! fertility restoration trait [Term] id: TO:0000499 name: flower morphology trait def: "A reproductive shoot system morphology trait (TO:0000786) which is a quality of a flower (PO:0009046)." [GR:pj, PO:0009046, POC:cooperl] xref: TO_GIT:57 is_a: TO:0000786 ! reproductive shoot system morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009046 ! flower [Term] id: TO:0000501 name: spikelet weight def: "A spikelet morphology trait (TO:0000657) which is the weight of a spikelet (PO:0009051)." [GR:pj, PO:0009051, TO:moorel] comment: Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body. synonym: "SPKWT" RELATED [] xref: PATO:0000128 is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0000502 name: potassium chlorate resistance def: "Resistance to the KClO3 salt content in the growth medium." [GR:pj] synonym: "KClO3 resistance" RELATED [] synonym: "KCLO3RS" RELATED [] is_a: TO:0000429 ! salt sensitivity [Term] id: TO:0000503 name: leaf rolling time def: "A leaf rolling trait (TO:0000085) which is the measure of time taken by the leaf to roll completely under drought or water stress." [GR:pj, TO:moorel] synonym: "LFRLTM" RELATED [] is_a: TO:0000085 ! leaf rolling intersection_of: PATO:0000165 ! time intersection_of: inheres_in TO:0000085 ! leaf rolling [Term] id: TO:0000504 name: leaf temperature def: "A leaf morphology trait (TO:0000748) which is the leaf surface temperature." [GR:pj, TO:cooperl, TO:moorel] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFTMP" RELATED [] is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000146 ! temperature intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000505 name: leaf weight def: "A leaf morphology trait (TO:0000505) which is the weight of a leaf (PO:0025034)." [GR:pj, TO:cooperl, TO:moorel] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFWT" RELATED [] is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000506 name: nitrogen recycling def: "It is a measure of reduced net ammonium production in response to the receipt of photosynthate." [GR:pj] synonym: "NIRCYC" RELATED [] synonym: "nitrogen conservation" RELATED [] is_a: TO:0000283 ! biological process trait [Term] id: TO:0000507 name: osmotic adjustment capacity def: "The ability of the plant to adust the osmotic potential under stress conditions." [GR:pj] comment: The main role of osmotic adjustment in the plant is to assist in the maintenance of turgor and volume as organs lose water during desiccation, i.e. to provide dehydration tolerance. Often determined by relative water or the amount of solute accumulated at a given water potential. synonym: "OSADJCAP" RELATED [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000508 name: penetrated root length def: "Average maximum length of the root of a plant in a study that have penetrated to a predetermined soil depth." [GR:pj] synonym: "PENRTLG" RELATED [] is_a: TO:0000227 ! root length [Term] id: TO:0000510 name: penetrated to total root ratio def: "A ratio of penetrated to total number of roots in a plant." [GR:pj] synonym: "PENTRTRO" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000511 name: phosphorus uptake def: "The total phosphorus ion uptake measured in a plant or a plant part." [GR:pj] synonym: "PHOUP" RELATED [] is_a: TO:0020096 ! mineral and ion transport trait [Term] id: TO:0000512 name: plant survival percentage under submergence def: "Percent of plants survived under submerged conditions." [GR:pj] synonym: "PTSPCENTSUB" RELATED [] is_a: TO:0000114 ! flooding related trait [Term] id: TO:0000513 name: potassium concentration def: "The total potassium ion concentration measured in a plant or a plant part or plant extract." [GR:pj] synonym: "KCONC" RELATED [] is_a: TO:0000609 ! potassium content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:26216 ! potassium atom [Term] id: TO:0000514 name: potassium uptake def: "The total potassium ion uptake measured in a plant or a plant part." [GR:pj] synonym: "KUP" RELATED [] is_a: TO:0020096 ! mineral and ion transport trait [Term] id: TO:0000515 name: relative growth rate def: "The relative growth of the plant determined after a given treatment as compared to the one determined under normal conditions." [GR:pj] synonym: "RELGRATE" RELATED [] is_a: TO:0000168 ! abiotic stress trait is_a: TO:0000250 ! vigor related trait [Term] id: TO:0000516 name: relative root length def: "The relative length of the root determined after a given treatment as compared to the one determined under normal conditions." [GR:pj] synonym: "RELRTLG" RELATED [] is_a: TO:0000227 ! root length [Term] id: TO:0000517 name: relative shoot elongation under submergence def: "Elongation of the shoot under submergence condition against a reference without submergence." [GR:pj] synonym: "RELSHELSUB" RELATED [] is_a: TO:0000114 ! flooding related trait is_a: TO:0000739 ! shoot axis morphology trait [Term] id: TO:0000519 name: rooting depth def: "It is calculated from the deepest soil layer where roots were present and the longest root measured in the layer." [GR:pj, PMID:12582650] synonym: "maximum rooting depth" NARROW [] synonym: "RTDP" RELATED [] is_a: TO:0000043 ! root morphology trait is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0000520 name: stomatal closure rate def: "The rate of closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration." [GR:pj] synonym: "STOCSRRATE" RELATED [] is_a: TO:0020095 ! stomatal process related trait intersection_of: PATO:0000161 ! rate intersection_of: inheres_in GO:0090332 ! stomatal closure [Term] id: TO:0000521 name: stomatal closure time def: "Average time taken for closure of stomata due to stress or coupled to the rate of photosynthesis and/or transpiration." [GR:pj] synonym: "STOCSRTM" RELATED [] is_a: TO:0020095 ! stomatal process related trait intersection_of: PATO:0000165 ! time intersection_of: inheres_in GO:0090332 ! stomatal closure [Term] id: TO:0000522 name: stomatal conductance def: "It is a numerical measure of the maximum rate of passage of either water vapour or carbon dioxide through the stomata." [GR:pj, Wikipedia:Stomatal_conductance] synonym: "STOCOND" RELATED [] is_a: TO:0020095 ! stomatal process related trait [Term] id: TO:0000523 name: stomatal resistance def: "Stomatal resistance (or its inverse, stomatal conductance) can therefore be calculated from the transpiration rate and humidity gradient. (The humidity gradient is the humidity inside the leaf, determined from leaf temperature based on the assumption that the leaf's air spaces are saturated with vapor, minus the humidity of the ambient air, which is measured directly)." [Wikipedia:Stomatal_conductance] comment: This allows scientists to learn how stomata respond to changes in environmental conditions, such as light intensity, humidity, or carbon dioxide concentration. synonym: "STORS" RELATED [] is_a: TO:0020095 ! stomatal process related trait [Term] id: TO:0000524 name: submergence tolerance synonym: "SUBTL" RELATED [] is_a: TO:0000286 ! submergence sensitivity [Term] id: TO:0000525 name: sodium to potassium content ratio def: "The ratio of total sodium to potassium ion content measured in a plant or a plant part." [GR:pj] synonym: "Na/K ratio" RELATED [] synonym: "NAKRO" RELATED [] synonym: "sodium to potassium ratio" RELATED [] is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in CHEBI:26708 ! sodium atom intersection_of: relative_to CHEBI:26216 ! potassium atom [Term] id: TO:0000526 name: sodium concentration def: "The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract." [GR:pj] synonym: "NACONC" RELATED [] is_a: TO:0000608 ! sodium content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:26708 ! sodium atom [Term] id: TO:0000527 name: sodium uptake def: "The total sodium ion uptake measured in a plant or a plant part." [GR:pj] synonym: "NAUP" RELATED [] is_a: TO:0020096 ! mineral and ion transport trait [Term] id: TO:0000528 name: total shoot elongation under submergence synonym: "TSHELSUB" RELATED [] is_a: TO:0000114 ! flooding related trait [Term] id: TO:0000529 name: abaxial stomatal frequency def: "Number of stomata present on the abaxial surface of leaf." [GR:pj] synonym: "ABXSTOFQ" RELATED [] is_a: TO:0000566 ! leaf stomatal complex frequency intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0002000 ! stomatal complex intersection_of: part_of PO:0006019 ! leaf abaxial epidermis [Term] id: TO:0000530 name: adaxial stomatal frequency def: "Number of stomata present on the adaxial surface of leaf." [GR:pj] synonym: "ADXSTOFQ" RELATED [] is_a: TO:0000566 ! leaf stomatal complex frequency intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0002000 ! stomatal complex intersection_of: part_of PO:0006018 ! leaf adaxial epidermis [Term] id: TO:0000531 name: anther length def: "An anther morphology trait (TO:1000022) which is the length (PATO:0000122) of an anther (PO:0009066)." [TO:ethan_johnson\nTO\:austin_meier] comment: Refers to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "ANTLG" RELATED [] xref: TO_GIT:385 is_a: TO:1000022 {is_inferred="true"} ! anther morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009066 ! anther relationship: inheres_in PO:0009066 {is_inferred="true"} ! anther relationship: part_of TO:0002609 ! stamen length [Term] id: TO:0000532 name: apiculus hair length def: "Length of the apiculus hair." [GR:pj] synonym: "APIHLG" RELATED [] synonym: "APIHRLG" RELATED [] is_a: TO:0000754 ! cardinal organ part morphology trait [Term] id: TO:0000534 name: culm color def: "Variation in the color of the culm of a grass plant." [GR:pj] synonym: "CULMCL" RELATED [] is_a: TO:0000056 ! stem color intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020142 ! stem internode [Term] id: TO:0000536 name: floret color def: "A floret morphology trait (TO:0000274) which is the color of the floret." [GR:pj] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "FLCL" RELATED [] xref: PATO:0000014 is_a: TO:0000274 ! floret morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009082 ! spikelet floret [Term] id: TO:0000537 name: flower color def: "A flower morphology trait (TO:0000499) which is the color of the flower (PO:0009046)." [GR:pj, PO:0009046, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "FLCL" RELATED [] xref: PATO:0000014 is_a: TO:0000499 ! flower morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009046 ! flower [Term] id: TO:0000538 name: large vascular bundle number to leaf area ratio def: "A ratio of the large sized vascular bundles to the leaf surface area." [GR:pj] synonym: "LVBNBLFARRO" RELATED [] is_a: TO:0000472 ! vascular bundle number intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in TO:0000539 ! large vascular bundle number intersection_of: relative_to TO:0000540 ! leaf area trait [Term] id: TO:0000539 name: large vascular bundle number def: "Number of the large sized vascular bundles." [GR:pj] synonym: "LVBNB" RELATED [] is_a: TO:0000472 ! vascular bundle number [Term] id: TO:0000540 name: leaf area trait def: "A leaf morphology trait (TO:0000748) which is the total area of a leaf (PO:0025034)." [GR:pj, PO:0025034, POC:cooperl] comment: Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFAR" RELATED [] xref: PATO:0001323 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0001323 ! area intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000541 name: leaf position def: "A leaf morphology trait (TO:0000748) which is the position of the leaf (PO:0025034) on the plant." [GR:pj, TO:cooperl] comment: Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. Usually measured from the ground. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "leaf height" RELATED [] synonym: "LFHT" RELATED [] xref: PATO:0000140 xref: TO_GIT:226 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000140 ! position intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0000542 name: leaf length to width ratio def: "A leaf size (TO:0002637) which is the ratio of leaf length to its width." [GR:pj] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "LFLGWDRO" RELATED [] is_a: TO:0002637 ! leaf size intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in PATO:0000122 ! length intersection_of: occurs_in PO:0025034 ! leaf intersection_of: relative_to PATO:0000921 ! width [Term] id: TO:0000543 name: leaf nitrogen content def: "A leaf composition trait (TO:0000493) which is the amount of nitrogen (CHEBI:51143) in the leaf (PO:0025034)." [CHEBI:51143] synonym: "LFNICN" RELATED [] xref: CHEBI:51143 is_a: TO:0000493 ! leaf composition trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:25555 ! nitrogen atom intersection_of: occurs_in PO:0025034 ! leaf [Term] id: TO:0000544 name: mesocotyl length def: "A mesocotyl morphology trait (TO:0000758) which is the length of a mesocotyl (PO:0020037)." [GR:pj, PO:0020037, POC:cooperl] synonym: "MCTLG" RELATED [] xref: PATO:0000122 xref: TO_GIT:64 is_a: TO:0000758 ! mesocotyl morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020037 ! mesocotyl [Term] id: TO:0000545 name: panicle base to lowest branch def: "A panicle morphology trait (TO:0000847) which is the length of the region between the panicle base to the lowest (the first) primary panicle branch." [GR:pj, TO:moorel] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. synonym: "panicle base to first primary branch" RELATED [] synonym: "panicle base to lowest primary panicle branch" RELATED [] synonym: "peduncle length from panicle base to first primary branch" RELATED [] synonym: "PNBLBR" RELATED [] xref: PATO:0000122 is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0000546 name: peduncle top diameter def: "A peduncle morphology trait (TO:0000776) which is the diameter at the tip of the peduncle (PO:0009053)." [GR:pj, PO:0009053, POC:cooperl] comment: Refers to the diameter ((PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary) of the tip of a peduncle (PO:0009053). synonym: "PDTDIA" RELATED [] xref: PATO:0001334 xref: TO_GIT:88 is_a: TO:0000776 ! peduncle morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0009053 ! peduncle [Term] id: TO:0000547 name: primary branch number def: "A primary branch of inflorescence (TO:0000052) trait which is the number of primary branches present in the inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] synonym: "NPB" RELATED [] synonym: "number of primary rachis branches" RELATED [] synonym: "panicle primary branch number" RELATED [] synonym: "PBRNB" RELATED [] synonym: "PRB" RELATED [] synonym: "primary branches per panicle" RELATED [] is_a: TO:0000052 ! primary branching of inflorescence intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009081 ! inflorescence branch [Term] id: TO:0000548 name: rhizome number def: "Number of rhizomes present in a plant." [GR:pj] synonym: "rhizome number per plant" RELATED [] synonym: "RHZNB" RELATED [] is_a: TO:0000549 ! rhizome morphology trait [Term] id: TO:0000549 name: rhizome morphology trait def: "A trait which is a quality of of the rhizomatic stem and its parts." [GR:pj] is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0004542 ! rhizome [Term] id: TO:0000550 name: rhizome branching angle def: "Angle of branches on a rhizhomatic stem." [GR:pj] synonym: "rhizome branching degree" RELATED [] synonym: "RHZBRAG" RELATED [] is_a: TO:0000549 ! rhizome morphology trait [Term] id: TO:0000551 name: rhizome branching number def: "Number of branches on a rhizhomatic stem." [GR:pj] synonym: "rhizome branching number per plant" RELATED [] synonym: "RHZBRNB" RELATED [] is_a: TO:0000549 ! rhizome morphology trait [Term] id: TO:0000552 name: shoot dry weight def: "The dry weight of the shoot without inflorescence." [GR:pj37] synonym: "SHDWT" RELATED [] synonym: "total shoot dry weight" RELATED [] is_a: TO:0000568 ! shoot axis weight relationship: part_of TO:0000352 ! plant dry weight [Term] id: TO:0000553 name: rhizome length def: "Length of the rhizhomatic stem." [GR:pj] synonym: "average rhizome length" RELATED [] synonym: "RHZLG" RELATED [] is_a: TO:0000549 ! rhizome morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0004542 ! rhizome [Term] id: TO:0000554 name: rhizome internode length def: "Length of internodes on a rhizhomatic stem." [GR:pj] synonym: "average rhizome internode length" RELATED [] synonym: "RHZINLG" RELATED [] is_a: TO:0000549 ! rhizome morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025204 ! rhizome internode [Term] id: TO:0000555 name: rhizome internode number def: "Number of internodes on a rhizhomatic stem." [GR:pj] synonym: "average rhizome internode number" RELATED [] synonym: "RHZINNB" RELATED [] is_a: TO:0000549 ! rhizome morphology trait [Term] id: TO:0000556 name: rhizome dry weight synonym: "rhizome dry weight per plant" RELATED [] synonym: "RHZDWT" RELATED [] is_a: TO:0000549 ! rhizome morphology trait relationship: part_of TO:0000352 ! plant dry weight [Term] id: TO:0000557 name: secondary branch number def: "A secondary branching of inflorescence (TO:0000142) trait which is the number of secondary branches in an inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] synonym: "SBRNB" RELATED [] synonym: "secondary branches per panicle" RELATED [] is_a: TO:0000142 ! secondary branching of inflorescence intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0006321 ! primary inflorescence branch [Term] id: TO:0000558 name: small vascular bundle number def: "Number of small sized vascular bundles present in a plant part." [GR:pj] synonym: "SVBNB" RELATED [] is_a: TO:0000472 ! vascular bundle number [Term] id: TO:0000559 name: plant volume def: "Space occupied by the plant." [GR:pj] synonym: "SP" RELATED [] synonym: "space" RELATED [] is_a: TO:0000398 ! whole plant morphology trait [Term] id: TO:0000560 name: space per culm def: "Space occupied by each culm or the tiller in a plant." [GR:pj] synonym: "SPPCULM" RELATED [] synonym: "tiller volume" RELATED [] is_a: TO:0000361 ! stem morphology trait [Term] id: TO:0000561 name: space to culm ratio def: "A ratio of total space or volume occupied by the whole plant to the total number of culms or tiller in the plant." [GR:pj] synonym: "SPCULMRO" RELATED [] is_a: TO:0000559 ! plant volume [Term] id: TO:0000562 name: specific leaf area def: "A leaf area trait (TO:0000540) that is the ratio of the leaf area (TO:0000540) to the leaf dry weight (TO:0001014) or leaf dry mass (TO:New)." [TO:cooperl] synonym: "leaf specific area" RELATED [] synonym: "SLA" RELATED [] synonym: "SLFAR" RELATED [] xref: MaizeGDB_QTL:247869 xref: TO_GIT:271 is_a: TO:0000540 ! leaf area trait [Term] id: TO:0000563 name: spikelet length to width ratio def: "A spikelet morphology trait (TO:0000657) which is the ratio of length to the width of a spikelet (PO:0009051)." [GR:pj, PO:0009051, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.\nRefer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "SPKLGWDRO" RELATED [] xref: PATO:0000122 xref: PATO:0000921 is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in PATO:0000122 ! length intersection_of: occurs_in PO:0009051 ! spikelet intersection_of: relative_to PATO:0000921 ! width [Term] id: TO:0000564 name: spikelet width def: "A spikelet morphology trait (TO:0000657) which is the width of the spikelets (PO:0009051) present in a grass inflorescence." [GR:pj, PO:0009051, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "SPKWD" RELATED [] xref: PATO:0000921 is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0000565 name: spikelets per panicle length def: "Number of spikelets present in the rice panicle per unit length." [GR:pj] synonym: "number of spikelets per cm panicle length" RELATED [] synonym: "spikelet number per panicle length" RELATED [] synonym: "SPKPPNLG" RELATED [] is_a: TO:0000456 ! spikelet number [Term] id: TO:0000566 name: leaf stomatal complex frequency def: "A vascular leaf morphology trait (TO:0000419) which is the number of leaf stomatal complexes (PO:0025183) present on the leaf surface." [GR:pj] synonym: "STOFQ" RELATED [] is_a: TO:0000419 ! vascular leaf morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0025183 ! leaf stomatal complex [Term] id: TO:0000567 name: tiller angle synonym: "TIAG" RELATED [] is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0000133 ! orientation intersection_of: inheres_in PO:0005001 ! basal axillary shoot system [Term] id: TO:0000568 name: shoot axis weight def: "Weight of the shoot without inflorescence." [GR:pj37] synonym: "SHWT" RELATED [] synonym: "total shoot weight" RELATED [] is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0025029 ! shoot axis relationship: part_of TO:0000327 ! shoot system yield trait [Term] id: TO:0000569 name: white-backed planthopper egg mortality synonym: "WBPH egg mortality" RELATED [] synonym: "WBPHOVI" RELATED [] is_a: TO:0000205 ! white-backed planthopper resistance [Term] id: TO:0000570 name: watery lesion percentage synonym: "percentage of watery lesion" RELATED [] synonym: "WLPCENT" RELATED [] is_a: TO:0000242 ! microbial damage resistance [Term] id: TO:0000571 name: shoot fresh weight def: "Fresh weight of the shoot without inflorescence." [GR:pj37] synonym: "SHFWT" RELATED [] synonym: "total shoot fresh weight" RELATED [] is_a: TO:0000568 ! shoot axis weight relationship: part_of TO:0000442 ! plant fresh weight [Term] id: TO:0000572 name: petal color def: "A petal morphology trait (TO:0000863) which is the color of a petal (PO:0009032)." [GR:pj, PO:0009032, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0000863 ! petal morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009032 ! petal relationship: part_of TO:0000537 ! flower color [Term] id: TO:0000573 name: sepal color def: "A sepal morphology trait (TO:0000864) which is the color of a sepal (PO:0009031) in a flower (PO:0009049)." [GR:pj, PO:0009031, PO:0009049, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0000864 ! sepal morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009031 ! sepal relationship: part_of TO:0000537 ! flower color [Term] id: TO:0000574 name: tepal color def: "A tepal morphology trait (TO:0000865) which is the color of a tepal (PO:0009033)." [GR:pj, PO:0009033, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0000865 ! tepal morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009033 ! tepal relationship: part_of TO:0000537 ! flower color [Term] id: TO:0000575 name: endosperm morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of an endosperm (PO:0009089)." [PO:0009089, TO:moorel] xref: TO_GIT:133 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000576 name: stem length alt_id: TO:0000309 def: "A stem morphology trait (TO:0000361) which is the length of the stem (PO:0009047)." [GR:pj37, PO:0009047, TO:moorel] comment: Often measured from soil surface to highest point on stem.\nRefer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "CmL" RELATED [] synonym: "core length" NARROW [] synonym: "culm height" RELATED [] synonym: "culm length" RELATED [] synonym: "CULMLG" RELATED [] synonym: "stem height" RELATED [] synonym: "STEMLG" RELATED [] xref: PATO:0000122 xref: TO_GIT:157 is_a: TO:0000168 ! abiotic stress trait is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009047 ! stem relationship: part_of TO:0000207 ! plant height [Term] id: TO:0000577 name: stem angle def: "A stem morphology trait (TO:0000361) which is the angle of a stem (PO:0009047)." [GR:pj, PO:0009047, TO:moorel] comment: Refer to angle (PATO:0002326): An orientation inhering in a bearer by virtue of the bearer's placement at an angle. synonym: "STEMAG" RELATED [] xref: PATO:0002326 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000133 ! orientation intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0000578 name: root fresh weight def: "The average fresh weight of the root determined in a study." [GR:pj37] synonym: "RTFWT" RELATED [] synonym: "total root fresh weight" RELATED [] is_a: TO:0000279 ! root weight relationship: part_of TO:0000442 ! plant fresh weight [Term] id: TO:0000579 name: root dry weight to tiller number ratio def: "The trait is an indirect measure of the balance between water absorption and transpiration." [GR:pj37] synonym: "deep root dry weight to tiller number ratio" RELATED [] synonym: "RTDWTTINBRO" RELATED [] is_a: TO:0000078 ! root dry weight intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in TO:0000078 ! root dry weight intersection_of: relative_to TO:0000346 ! tiller number [Term] id: TO:0000580 name: cytoplasmic male sterility is_a: TO:0000106 ! male sterility type [Term] id: TO:0000581 name: inflorescence color def: "An inflorescence morphology trait (TO:0000373) which is the color of an inflorescence (PO:0009049)." [GR:pj, PO:0009049, POC:cooperl] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "head color" NARROW [] xref: PATO:0000014 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000582 name: inflorescence number def: "An inflorescence morphology trait (TO:0000373) which is the average number of inflorescence (PO:0009049) per plant in a study." [GR:pj, PO:0009049, TO:moorel] comment: Refer to number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. The infloresence number is also an above ground biomas yield trait (TO:0000327). synonym: "INFLONB" RELATED [] xref: PATO:0001555 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait is_a: TO:0000621 ! inflorescence development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000583 name: infructescence weight def: "An infructescence morphology trait (TO:0000920) that is the average weight (mass) of an infructescence bearing mature fruit (PO:0009001)." [GR:pj, TO:cooperl] comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. xref: TO_GIT:244 is_a: TO:0000920 ! infructescence morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0006342 ! infructescence [Term] id: TO:0000586 name: seminal root length def: "A root length (TO:0000227) that is the length of one or more seminal roots (PO:0000046)." [GR:pj37, TO:seymour_megan\nTO\:austin_meier] comment: Seminal root is the primary root originating in a plant after germination.\nRefer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 xref: TO_GIT:365 is_a: TO:0000227 ! root length intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0000046 ! seminal root [Term] id: TO:0000587 name: endosperm quality alt_id: TO:0000150 def: "A seed quality trait (TO:0000931) which is the quality of the endosperm (PO:0009089) texture, content, composition, size, etc." [GR:pj, PO:0009089] synonym: "End" RELATED [] synonym: "endosperm quality (sensu Poaceae)" RELATED [] is_a: TO:0000931 ! seed quality trait intersection_of: TO:0000597 ! quality trait intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000589 name: average grain weight alt_id: TO:0000509 def: "A grain yield trait (TO:0000396) which is the average weight of a grain, including the caryopsis hull (PO:0006000)." [GR:pj, POC:cooperl] comment: The average grain weight (TO:0000589) can be used to calculate the overall yield or produce from a field. synonym: "grain weight" RELATED [] synonym: "GRWT" RELATED [] synonym: "kernel weight" RELATED [] synonym: "SDWT" RELATED [] xref: TO_GIT:245 is_a: TO:0000396 ! grain yield trait [Term] id: TO:0000590 name: dehulled grain weight def: "A fruit weight (TO:0002746) which is the weight of one or more dehulled grains." [GR:pj, POC:cooperl] synonym: "DHULGRWT" RELATED [] synonym: "GRWT" RELATED [] xref: TO_GIT:242 is_a: TO:0002746 ! fruit weight [Term] id: TO:0000591 name: 100-dehulled grain weight def: "Weight of the 100-dehulled grain having pericarp (seed coat)." [GR:pj] synonym: "HDGRWT" RELATED [] synonym: "HDHULGRWT" RELATED [] synonym: "hundred dehulled-grain weight" RELATED [] synonym: "hundred grain weight" RELATED [] is_a: TO:0000590 ! dehulled grain weight [Term] id: TO:0000592 name: 1000-dehulled grain weight def: "Weight of the 1000-dehulled grains having pericarp (seed coat)." [GR:pj] synonym: "TDGRWT" RELATED [] synonym: "TDHULGRWT" RELATED [] synonym: "thousand dehulled-grain weight" RELATED [] synonym: "thousand grain weight" RELATED [] is_a: TO:0000590 ! dehulled grain weight [Term] id: TO:0000593 name: polished grain weight def: "Weight of the polished grain (without hull and pericarp) weight." [GR:pj] synonym: "PLSGRWT" RELATED [] is_a: TO:0000589 ! average grain weight [Term] id: TO:0000594 name: 100-polished grain weight def: "Weight of the 100-polished grain (without hull and pericarp) weight." [GR:pj] synonym: "HPLSGRWT" RELATED [] synonym: "hundred polished grain weight" RELATED [] is_a: TO:0000593 ! polished grain weight [Term] id: TO:0000595 name: 1000-polished grain weight def: "Weight of the 1000 polished grain (without hull and pericarp) weight." [GR:pj] synonym: "thousand polished grain weight" RELATED [] synonym: "TPLSGRWT" RELATED [] is_a: TO:0000593 ! polished grain weight [Term] id: TO:0000596 name: plant volume (sensu Poaceae) def: "OBSOLETE." [] is_obsolete: true [Term] id: TO:0000597 name: quality trait def: "A plant trait (TO:0000387) that is the commercial and /or economical value of the plant product, or its overall improvement." [GR:pj, TO:cooperl] comment: Quality traits are often also classified as belonging to another upper level class such as: morphology trait (TO:0000017), biochemical trait (TO:0000277), growth and development trait (TO:0000357), stature or vigor trait (TO:0000133) and so on. xref: TO_GIT:260 is_a: TO:0000387 ! plant trait created_by: jaiswalp [Term] id: TO:0000598 name: protein content def: "The total protein content measured in a plant or a plant part." [GR:pj37] synonym: "PROTCN" RELATED [] synonym: "total protein content" RELATED [] is_a: TO:0000281 ! metabolite content trait [Term] id: TO:0000599 name: enzyme activity trait def: "A biochemical trait which is a quality of an enzymatic reaction." [] {comment="TO:cooperl"} comment: Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. {xref="GO:0003824"} synonym: "enzymatic activity" RELATED [] synonym: "enzyme catalytic activity" RELATED [] xref: TO_GIT:380 is_a: TO:0000277 ! biochemical trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0003824 ! catalytic activity [Term] id: TO:0000600 name: UV-A light sensitivity def: "Response shown by the plant in the presence of UV-A light stress." [GR:pj] synonym: "Ultraviolet-A light sensitivity" RELATED [] synonym: "Ultraviolet-A resistance" RELATED [] synonym: "UV-A resistance" RELATED [] synonym: "UVARS" RELATED [] is_a: TO:0000160 ! UV light sensitivity [Term] id: TO:0000601 name: UV-B light sensitivity def: "Response shown by the plant in the presence of UV-B light stress." [GR:pj] synonym: "Ultraviolet-A light sensitivity" RELATED [] synonym: "Ultraviolet-B resistance" RELATED [] synonym: "UV-B resistance" RELATED [] synonym: "UVBRS" RELATED [] is_a: TO:0000160 ! UV light sensitivity [Term] id: TO:0000602 name: total fat content def: "The total fat or lipid content of present in the plant or the plant part such as seed." [GR:pj] synonym: "FATCN" RELATED [] synonym: "lipid content" RELATED [] is_a: TO:0000491 ! fat and essential oil composition related trait is_a: TO:0000604 ! fat and essential oil content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17855 [Term] id: TO:0000603 name: magnesium to potassium content ratio def: "The ratio of total magnesium to potassium ion content measured in a plant or a plant part." [GR:pj] synonym: "Magnesium to potassium ratio" RELATED [] synonym: "MGKCNRO" RELATED [] synonym: "ratio of magnesium to potassium" RELATED [] is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0001470 ! proportionality to intersection_of: inheres_in CHEBI:25107 ! magnesium atom intersection_of: relative_to TO:0000609 ! potassium content [Term] id: TO:0000604 name: fat and essential oil content def: "Measures the fat and essential oil content in a plant or plant part." [GR:pj] is_a: TO:0000281 ! metabolite content trait [Term] id: TO:0000605 name: hydrogen peroxide content def: "An assay to determine the content of hydrogen peroxide or the peroxide reactive ions." [GR:pj] synonym: "H2O2 content" RELATED [] synonym: "H2O2CN" RELATED [] is_a: TO:0000281 ! metabolite content trait is_a: TO:0002657 ! oxidative stress intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:16240 ! hydrogen peroxide [Term] id: TO:0000606 name: diastatic power def: "An assay to determine the joint action of alpha-amylase, beta-amylase and any other carbohydrate-degrading enzymes." [GR_REF:8025] synonym: "DIASPWR" RELATED [] is_a: TO:0000599 ! enzyme activity trait [Term] id: TO:0000607 name: ash content def: "The total mineral or ion content measured after drying and burning the plant or a plant part." [GR:pj] is_a: TO:0000465 ! mineral and ion content related trait [Term] id: TO:0000608 name: sodium content def: "The total sodium ion content measured in a plant or a plant part." [GR:pj] is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000070 ! amount intersection_of: inheres_in CHEBI:26708 ! sodium atom [Term] id: TO:0000609 name: potassium content def: "The total potassium ion content measured in a plant or a plant part." [GR:pj] is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000070 ! amount intersection_of: inheres_in CHEBI:26216 ! potassium atom [Term] id: TO:0000610 name: soluble to total protein ratio def: "The ratio of soluble protein to total protein content is a measure of the degree of proteolysis." [GR_REF:8025] comment: As seen in degree of modification of grain to malt in barley. synonym: "Soluble protein to total protein content ratio" RELATED [] synonym: "STPROTRO" RELATED [] is_a: TO:0000325 ! soluble protein content is_a: TO:0000490 ! seed protein composition trait is_a: TO:0000598 ! protein content [Term] id: TO:0000611 name: malt-extract percentage def: "It is a measure of the sugars and nitrogenous compounds available for yeast nutrition." [GR_REF:8025] synonym: "malt-extract percent" RELATED [] synonym: "MALTEXTPCENT" RELATED [] is_a: TO:0000281 ! metabolite content trait is_a: TO:0000488 ! seed composition based quality trait is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000612 name: grain density def: "A grain quality trait (TO:0000162) that is a measure of the density or weight per unit of volume of a grain at a standardized moisture level." [GR_REF:8025, TO:cooperl] synonym: "SDDN" RELATED [] synonym: "test weight" RELATED [] xref: TO_GIT:262 is_a: TO:0000162 ! grain quality trait intersection_of: PATO:0001019 ! mass density intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000613 name: groat percentage def: "It is defined as the amount of hull-less kernels obtained after de-hulling, expressed as a percentage of the weight of the sample." [GR_REF:8025] comment: This trait is most commonly used in determining the milling quality of Oat. synonym: "caryopsis percentage" RELATED [] synonym: "groat proportion" RELATED [] synonym: "GROATPCENT" RELATED [] synonym: "hull percentage" RELATED [] is_a: TO:0000371 ! yield trait is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0000614 name: lemma shape def: "A lemma and palea morphology trait (TO:0000079) which is the shape of the lemma (PO:0009037) in a floret." [GR:pj, PO:0009037, TO:moorel] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: PATO:0000052 {is_inferred="true"} ! shape is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009037 ! lemma relationship: inheres_in PO:0009037 {is_inferred="true"} ! lemma [Term] id: TO:0000615 name: abscisic acid sensitivity def: "Response with respect to application of abscisic acid." [GR:pj] synonym: "ABA response" RELATED [] synonym: "ABASN" RELATED [] synonym: "abscisic acid response" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:22152 ! 2-cis-abscisic acid intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000616 name: leaf perimeter def: "It is a measure of the total length covered by the leaf margin." [GR:pj] synonym: "leaf circumference" RELATED [] synonym: "LFCIRCUM" RELATED [] is_a: TO:0000492 ! leaf shape intersection_of: PATO:0001711 ! perimeter intersection_of: inheres_in PO:0009025 ! vascular leaf [Term] id: TO:0000617 name: colored grain percentage def: "Percentage of colored de-hulled grains in a sample of grains with reference color." [GR:pj] synonym: "percentage of colored grains" RELATED [] synonym: "percentage of damaged yellow rice grains" RELATED [] synonym: "percentage of green rice grains" RELATED [] synonym: "percentage of red rice grains" RELATED [] is_a: TO:0000707 ! pericarp color [Term] id: TO:0000618 name: crushed grain percentage def: "The percentage of cracked dehulled grain with at least one fourth of the size still intact." [GR:pj] synonym: "cracked dehulled-grain percentage" RELATED [] synonym: "cracked grain percentage" RELATED [] synonym: "CRUSHDHULGRPCENT" RELATED [] synonym: "crushed dehulled-grain percentage" RELATED [] synonym: "CRUSHGRPCENT" RELATED [] synonym: "percent broken" RELATED [] synonym: "percentage brokens" RELATED [] is_a: TO:0000162 ! grain quality trait [Term] id: TO:0000619 name: vivipary def: "A phenomenon associated to the seeds that germinate before becoming detached or harvested from the parent plant. Thus the germination occurs before the seed undergoes dormancy." [GR:pj] synonym: "preharvest germination" RELATED [] is_a: TO:0000166 ! gibberellic acid sensitivity is_a: TO:0000615 ! abscisic acid sensitivity is_a: TO:0000620 ! plant embryo development trait [Term] id: TO:0000620 name: plant embryo development trait def: "A whole plant growth and development trait (TO:0000947) that is a quality of a plant embryo development stage (PO:0007631)." [GR:pj, TO:cooperl] xref: TO_GIT:299 is_a: TO:0000947 ! whole plant growth and development trait [Term] id: TO:0000621 name: inflorescence development trait def: "Traits associated with observing effects on the development of the inflorescence and its parts." [GR:pj] is_a: TO:0000654 ! shoot system growth and development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0010229 ! inflorescence development [Term] id: TO:0000622 name: flower development trait def: "Traits associated with observing effects on the development of the flower and its parts." [GR:pj] synonym: "floret development trait" RELATED [] is_a: TO:0000621 ! inflorescence development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0009908 ! flower development [Term] id: TO:0000623 name: involucre bristle length def: "An inflorescence bristle length trait (TO:0000643) that is the length of the bristles found on an involucre (PO:0009100)." [GR:pj, TO:cooperl] synonym: "bristle length" RELATED [] synonym: "INVLCBS" RELATED [] synonym: "sterile inflorescence branch length" RELATED [] xref: TO_GIT:153 is_a: TO:0000643 ! inflorescence bristle length is_a: TO:0000979 ! involucre morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009100 ! involucre [Term] id: TO:0000624 name: allelopathic effect def: "This is an assay of any direct or indirect, harmful or beneficial effect of one plant on another through the production of chemical compounds (allelochemicals) that escape in the environment." [GR:pj] synonym: "ALLELPATHEF" RELATED [] is_a: TO:0000347 ! weed damage [Term] id: TO:0000625 name: spikelet density def: "A spikelet morphology trait (TO:0000657) which is the density of a spikelet (PO:0009051) in the inflorescence (PO:0009049) or on the given inflorescence branch (PO:0009081) order." [GR:pj, PO:0009049, PO:0009051, PO:0009081, TO:moorel] comment: Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. synonym: "SPKDN" RELATED [] xref: PATO:0001019 is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0001019 ! mass density intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0000626 name: relative phosphorus distribution between shoot and root synonym: "RELPHOCONCSHRT" RELATED [] is_a: TO:0000102 ! phosphorus sensitivity is_a: TO:0001024 ! phosphorus content [Term] id: TO:0000627 name: relative phosphorus utilization efficiency synonym: "RELPHOUTZEFY" RELATED [] is_a: TO:0000102 ! phosphorus sensitivity [Term] id: TO:0000628 name: pearl millet downy mildew resistance def: "Causal agent: Sclerospora graminicola (Sacc. ) Schroet. It causes the downy mildew disease in Pearl millet." [GR:pj] synonym: "Pg_DNMDRS" RELATED [] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000629 name: days to tassel def: "It is determined as the number of days from the seed sowing to the stage when either the pollen shedding or anther exsertion occurs on the maize tassel." [GR:pj] comment: Depends on the study type. For a study with multiple plants, on average 50% of the plants must have sheeding of pollen or anther exsertion. synonym: "days to tassel flowering" EXACT [] is_a: TO:0000344 ! days to flowering trait is_a: TO:0000365 ! male flowering [Term] id: TO:0000630 name: pedicel length def: "Length of the pedicel." [GR:pj] synonym: "PDCLG" RELATED [] is_a: TO:0000784 ! inflorescence branch morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009052 ! flower pedicel [Term] id: TO:0000631 name: green plantlet differentiation frequency synonym: "GRNPTLDFQ" RELATED [] is_a: TO:0000243 ! in vitro regeneration ability [Term] id: TO:0000632 name: Green plantlet yield frequency synonym: "GRNPTLYLDFQ" RELATED [] is_a: TO:0000243 ! in vitro regeneration ability [Term] id: TO:0000633 name: relative total dry weight synonym: "RELTDWT" RELATED [] is_a: TO:0000352 ! plant dry weight [Term] id: TO:0000634 name: stem node number def: "A stem morphology trait (TO:0000361) which is the number of stem nodes (PO:0020141)." [GR:pj] synonym: "NDNB" RELATED [] is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0020141 ! stem node intersection_of: occurs_in PO:0009047 ! stem [Term] id: TO:0000635 name: popping expansion volume synonym: "popcorn volume" RELATED [] synonym: "POPEXPVOL" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000636 name: relative shoot dry weight synonym: "RELSHDWT" RELATED [] is_a: TO:0000552 ! shoot dry weight [Term] id: TO:0000638 name: spike width synonym: "SPIKEWD" RELATED [] is_a: TO:0000804 ! inflorescence width [Term] id: TO:0000639 name: seed fertility synonym: "percent seed fertility" RELATED [] synonym: "SDFRT" RELATED [] is_a: TO:0000420 ! fertility related trait is_a: TO:0000931 ! seed quality trait intersection_of: PATO:0000274 ! fertility intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000640 name: total root number def: "Total sum of number of roots in a plant derived per experiment." [GR:pj] synonym: "TRTNB" RELATED [] is_a: TO:0000084 ! root number [Term] id: TO:0000641 name: inflorescence primary branch length def: "An inflorescence primary branch morphology trait (TO:0000846) which the length of a second order inflorescence axis (PO:0006321)." [GR:pj, PO:0006321, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "PBRLG" RELATED [] xref: PATO:0000122 is_a: TO:0000846 ! inflorescence primary branch morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009081 ! inflorescence branch [Term] id: TO:0000642 name: leaf sheath diameter def: "A leaf sheath morphology trait (TO:0000835) which is the measurement, in centimeters of the leaf sheath (PO:0020104) diameter." [GR:pj, PO:0020104, TO:moorel] comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. synonym: "LFSDIA" RELATED [] xref: PATO:0001334 is_a: TO:0000835 ! leaf sheath morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0020104 ! leaf sheath [Term] id: TO:0000643 name: inflorescence bristle length def: "An inflorescence morphology trait (TO:0000050) that is the length of the bristles found on an inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] synonym: "BRLG" RELATED [] xref: TO_GIT:153 is_a: TO:0000373 ! inflorescence morphology trait [Term] id: TO:0000644 name: relative root dry weight def: "The relative (dry)weight of the root determined after a given treatment as compared to the one determined under normal conditions." [GR:pj] synonym: "RELRTDWT" RELATED [] is_a: TO:0000078 ! root dry weight [Term] id: TO:0000645 name: relative phosphorus concentration synonym: "RELPHOCONC" RELATED [] is_a: TO:0000102 ! phosphorus sensitivity is_a: TO:0001024 ! phosphorus content created_by: jaiswalp [Term] id: TO:0000646 name: cauline axillary branch number synonym: "CAUAXIBRNB" RELATED [] is_a: TO:0002639 ! shoot branching [Term] id: TO:0000647 name: relative acid phosphatase activity synonym: "RELACIDPASEACT" RELATED [] is_a: TO:0000705 ! acid phosphatase activity [Term] id: TO:0000648 name: relative phosphorus uptake synonym: "RELPHOUP" RELATED [] is_a: TO:0000102 ! phosphorus sensitivity [Term] id: TO:0000649 name: peduncle width def: "A peduncle morphology trait (TO:0000776) which is the width of a peduncle (PO:0025386)." [GR:pj, PO:0025386, POC:cooperl] comment: Refers to the width ((PATO:0000921):A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite) of a peduncle (PO:0009053). synonym: "PDCWD" RELATED [] xref: PATO:0000921 xref: TO_GIT:88 is_a: TO:0000776 ! peduncle morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009053 ! peduncle [Term] id: TO:0000650 name: lemma length def: "A lemma and palea morphology trait (TO:0000079) which is the length of the lemma (PO:0009037)." [GR:pj, PO:0009037, TO:moorel] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. synonym: "LEMLG" RELATED [] xref: PATO:0000122 is_a: TO:0000817 {is_inferred="true"} ! inflorescence bract length is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009037 ! lemma relationship: inheres_in PO:0009037 {is_inferred="true"} ! lemma [Term] id: TO:0000651 name: flour color synonym: "FLRCL" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0000652 name: leaf necrosis def: "A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue." [GR:pj, TO:cooperl] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. synonym: "leaf scorch" RELATED [] synonym: "LFNEC" RELATED [] is_a: TO:0000748 ! leaf morphology trait [Term] id: TO:0000653 name: seed growth and development trait def: "A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a seed (PO:0009010)." [GR:pj, TO:cooperl] xref: TO_GIT:254 is_a: TO:0000926 ! multi-tissue plant structure growth and development trait [Term] id: TO:0000654 name: shoot system growth and development trait def: "A plant structure growth and development trait (TO:0000928) that is a quality of the growth of the shoot system (PO:0009006), and shoot system development stages (PO:0025527)." [GR:pj, TO:cooperl] xref: TO_GIT:268 is_a: TO:0000928 ! plant structure growth and development trait [Term] id: TO:0000655 name: leaf growth and development trait def: "A plant organ development trait (TO:0000927) that has as primary participant a leaf (PO:0025034)." [GR:pj, TO:cooperl] xref: TO_GIT:253 is_a: TO:0000927 ! plant organ growth and development trait created_by: jaiswalp [Term] id: TO:0000656 name: root development trait def: "Traits associated with observing effects on the development of the root and its parts." [GR:pj] is_a: TO:0000927 ! plant organ growth and development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in PO:0007520 ! root development stage [Term] id: TO:0000657 name: spikelet morphology trait def: "An inflorescence morphology trait (TO:0000373) which is a quality of a spikelet (PO:0009051)." [GR:pj, PO:0009051, TO:cooperl, TO:moorel] synonym: "" RELATED [] xref: TO_GIT:144 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0000658 name: days to silk def: "It is determined as the number of days from the seed sowing to the first visible silk (stigma) on the maize ear." [GR:pj] comment: Depends on the study type. For a study with multiple plants, on average 50% of the plants must have exposed silks. is_a: TO:0000344 ! days to flowering trait is_a: TO:0000359 ! female flowering [Term] id: TO:0000659 name: phyllochron def: "The time interval between the appearance of successive leaves (days/leaf) on the developing shoot." [GR:pj] is_a: TO:0000655 ! leaf growth and development trait [Term] id: TO:0000660 name: axillary bud dormancy is_a: TO:0000654 ! shoot system growth and development trait [Term] id: TO:0000661 name: tiller bud dormancy is_a: TO:0000660 ! axillary bud dormancy relationship: part_of TO:0000329 ! tillering ability [Term] id: TO:0000662 name: barley fusarium head blight resistance def: "Caused by Fusarium graminearum Schwabe, that affects the quality and yield of barley (Hordeum vulgare L.) grain." [GR:pj] synonym: "Hv_FUSHEADBTRS" RELATED [] is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0000663 name: wheat fusarium head blight resistance def: "Caused by Fusarium graminearum Schwabe (teleomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum aestivum L.)." [GR:pj] synonym: "Ta_FUSHEADBTRS" RELATED [] xref: TO_GIT:70 is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0000664 name: fungal blight disease resistance is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0000665 name: grain core area white def: "Measurement of the whitish area found in the dehulled grain." [GR:pj] synonym: "GRCARWHT" RELATED [] is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000666 name: brown rice yield synonym: "BRWRYLD" RELATED [] is_a: TO:0000449 ! grain yield per plant [Term] id: TO:0000667 name: cooking or brewing quality def: "The quality trait of the seed or the products derived from it." [GR:pj] is_a: TO:0000931 ! seed quality trait [Term] id: TO:0000668 name: mycotoxin content def: "Measuring amount of toxins found in the host plant after the infection by a fungal pathogen. The toxin is produced by the pathogen." [GR:pj] is_a: TO:0000281 ! metabolite content trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:25442 ! mycotoxin [Term] id: TO:0000669 name: deoxynivalenol content def: "Measuring amount of mycotoxin deoxynivalenol found in the host plant after the infection by a fungus Fusarium sp." [GR:pj, PMID:12897863] synonym: "DONCONC" RELATED [] is_a: TO:0000668 ! mycotoxin content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:10022 [Term] id: TO:0000670 name: floret number def: "The number of flowers present on a inflorescence branch or in the inflorescence itself." [GR:pj] synonym: "FLNB" RELATED [] is_a: TO:0000274 ! floret morphology trait is_a: TO:0000622 ! flower development trait [Term] id: TO:0000671 name: pre-flowering flower abortion synonym: "frequency of pre-flowering floret abortion" RELATED [] synonym: "pre-flowering floret abortion" RELATED [] synonym: "PREFLFLRABR" RELATED [] is_a: TO:0000622 ! flower development trait [Term] id: TO:0000672 name: bran percentage synonym: "BRAPCENT" RELATED [] synonym: "rice bran percentage" RELATED [] is_a: TO:0000162 ! grain quality trait [Term] id: TO:0000673 name: tetraploid wheat fusarium head blight resistance def: "Caused by Fusarium graminearum Schwabe (telomorph: Gibberella zeae), in the USA and Canada. It causes severe yield and quality losses in wheat (Triticum turgidum)." [GR:pj] synonym: "tetraploid wheat fusarium head blight disease resistance" RELATED [] synonym: "Tt_FUSHEADBTRS" RELATED [] is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0000674 name: phytochemical compound content def: "They are non-nutritive plant chemicals that have protective or disease preventive properties." [GR:pj] is_a: TO:0000281 ! metabolite content trait [Term] id: TO:0000675 name: ferulic acid content def: "Amount of ferulic acid content determined in a given plant part. Ferulic acid is an antioxidant which neutralizes free radicals (superoxide, nitric oxide and hydroxyl radical) which could cause oxidative damage of cell membranes and DNA. Ferulic acid helps to prevent damage to the cells caused by ultraviolet light." [GR:pj] comment: It is found in the leaves and seeds of many plants, but especially in cereals such as brown rice, whole wheat and oats. synonym: "4-hydroxy-3-methoxycinnamic acid" RELATED [] synonym: "FERULICACIDCN" RELATED [] is_a: TO:0000674 ! phytochemical compound content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17620 ! ferulic acid [Term] id: TO:0000676 name: style color def: "Style color is determined from blooming flowers or florets." [GR:pj] synonym: "color of silk" RELATED [] synonym: "color of style" RELATED [] synonym: "silk color" RELATED [] synonym: "STYCL" RELATED [] is_a: TO:0006012 ! carpel morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009074 ! style [Term] id: TO:0000677 name: third leaf position def: "A leaf position (TO:0000541) which is the position of the third leaf (PO:0025034) on a plant." [GR:pj, TO:cooperl] comment: Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. synonym: "3LFHT" RELATED [] synonym: "3rd leaf height" RELATED [] synonym: "third leaf height" RELATED [] xref: TO_GIT:226 is_a: TO:0000541 ! leaf position [Term] id: TO:0000678 name: cob diameter def: "An infructescence axis morphology trait (TO:0000921) which is the diameter of a cob." [POC:Cooperl] comment: The cob is the first order infructescence axis PO:0025244 of the ear infructescence (new). Refers to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. In maize, this is measured in centimeters. synonym: "cobd" RELATED [MaizeGDB_QTL:82753] synonym: "COBDIA" RELATED [] synonym: "diameter of central spike of ear " RELATED [] xref: MaizeGDB_QTL:82753 xref: PATO:0001334 xref: TO_GIT:243 is_a: TO:0000921 ! infructescence axis morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0006505 ! central spike of ear inflorescence relationship: part_of TO:0000433 ! ear diameter [Term] id: TO:0000680 name: inflorescence circumference synonym: "INFLOCIRCUM" RELATED [] is_a: TO:0006031 ! inflorescence size intersection_of: PATO:0001648 ! circumference intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000681 name: ear circumference def: "An ear infructescence morphology trait (TO:0000976) that is the circumference of an ear infructescence (PO:0025597)." [TO:cooperl] comment: Refers to circumference (PATO:0001648): An 1-D extent quality which is equal to the length of the closed curve of a circle. Ear circumference (TO:0000681) is equal to ear diameter (TO:0000433) times 3.14. synonym: "ear infructescence circumference" EXACT [] synonym: "EARCIRCUM" RELATED [] xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0001648 ! circumference intersection_of: inheres_in PO:0025597 ! ear infructescence [Term] id: TO:0000682 name: inflorescence height def: "An inflorescence morphology trait (TO:0000373) which is the height of an inflorescence (PO:0009049) measured from ground to the attachment point." [GR:pj, PO:0009049, TO:moorel] comment: Refer to height (PATO:0000119): A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. synonym: "INFLOHT" RELATED [] xref: PATO:0000119 xref: TO_GIT:226 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000119 ! height intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0000683 name: ear infructescence position def: "An ear infructescence morphology trait (TO:0000976) which is the position of an ear infructescence (PO:0025597)." [GR:pj, TO:cooperl, TO:moorel] comment: Refers to: position (PATO_0000140): A spatial quality inhering in a bearer by virtue of the bearer's spatial location relative to other objects in the vicinity. In maize this is usually measured from the ground to the attachment point of the ear. synonym: "ear height" RELATED [] synonym: "EARHT" RELATED [] xref: MaizeGDB_QTL:61369 xref: TO_GIT:226 is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0000140 ! position intersection_of: inheres_in PO:0025597 ! ear infructescence [Term] id: TO:0000684 name: grassy flavor def: "An assay to test for aroma and flavor reminiscent of freshly cut grass." [GR:pj] synonym: "grassy flavour" RELATED [] synonym: "GRASSYFLVOR" RELATED [] is_a: TO:0002694 ! fruit flavor trait [Term] id: TO:0000685 name: fruit tenderness def: "An assay for the soft and juicy texture." [GR:pj] synonym: "FRTENDER" RELATED [] synonym: "TENDER" RELATED [] is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0000686 name: juiciness def: "An assay for a juicy appetizingness." [GR:pj] synonym: "JUICE" RELATED [] synonym: "succulence" RELATED [] is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0000687 name: kernel row number per ear def: "An infructescence morphology trait (TO:0000920) which is the number of rows of kernels per ear infructescence (PO:0025597)." [TO:cooperl] comment: In maize, kernel row number is counted on the central, widest part of the uppermost ear infructescence. In comparing to teosinte "rank", kernel row number is divided by two. synonym: "kernel row number per ear" RELATED [] synonym: "KERROWNB" RELATED [] xref: MaizeGDB_QTL:99383 xref: TO_GIT:286 is_a: TO:0000936 ! infructescence yield trait is_a: TO:0000976 ! ear infructescence morphology trait [Term] id: TO:0000688 name: kernel row length def: "A infructescence yield trait (TO:0000936) which is the length of a kernel row from base to where kernels end on the ear infructescence (PO:0025597)." [TO:cooperl] synonym: "kernel set length" RELATED [] synonym: "KERROWLG" RELATED [] xref: TO_GIT:288 is_a: TO:0000936 ! infructescence yield trait [Term] id: TO:0000689 name: grain tenderness synonym: "GRTENDER" RELATED [] synonym: "kernel tenderness" RELATED [] is_a: TO:0000685 ! fruit tenderness [Term] id: TO:0000690 name: maysin content def: "Measures the maysin content in a plant or plant part." [GR:pj] comment: Maysin is a coagulable globulin protein produced by the maize plant. It has insecticide properties. synonym: "MAYSINCN" RELATED [] is_a: TO:0000598 ! protein content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:70206 ! maysin [Term] id: TO:0000691 name: Zea mays northern leaf blight disease resistance def: "Causal agent: Setosphaeria turcica." [GR:pj] is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0000692 name: NCLB incubation period synonym: "NLFBTINCUBPD" RELATED [] is_a: TO:0000439 ! fungal disease resistance relationship: part_of TO:0000691 ! Zea mays northern leaf blight disease resistance [Term] id: TO:0000693 name: NCLB area under disease progress curve synonym: "AUDPC" RELATED [] synonym: "NLFBTPROGCURV" RELATED [] is_a: TO:0000439 ! fungal disease resistance relationship: part_of TO:0000691 ! Zea mays northern leaf blight disease resistance [Term] id: TO:0000694 name: fruit crispness def: "An assay of firmness and freshness of the fruit." [GR:pj] synonym: "CRISP" RELATED [] is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0000695 name: leaf margin color def: "A leaf margin morphology trait (TO:0002635) which is the color of a leaf margin (PO:0020128)." [PO:0020128, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "leaf margin pigmentation" RELATED [] synonym: "LFMCL" RELATED [] synonym: "pigmentation of leaf margin" RELATED [] xref: PATO:0000014 is_a: TO:0002635 ! leaf margin morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020128 ! leaf margin [Term] id: TO:0000696 name: starch content def: "Amount of starch present in the plant or plant part." [GR:pj] synonym: "STARCHCN" RELATED [] is_a: TO:0000489 ! carbohydrate composition related trait is_a: TO:0006007 ! polysaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28017 ! starch [Term] id: TO:0000697 name: starch yield def: "An assay to determine the starch yield from a bigger sample such as from a given population or from a plot or field. It is often carried out initially with the smaller sample but later converted to associate with a large sample for example record starch yield in kilograms per hectare." [GR:pj] synonym: "STARCHYLD" RELATED [] is_a: TO:0000162 ! grain quality trait is_a: TO:0000291 ! carbohydrate content is_a: TO:0000371 ! yield trait [Term] id: TO:0000698 name: starchiness synonym: "mealiness" RELATED [] synonym: "STARCH" RELATED [] is_a: TO:0000291 ! carbohydrate content [Term] id: TO:0000699 name: sucrose synthase activity trait def: "Catalysis of the reaction: UDP-glucose + D-fructose = UDP + sucrose." [GO:GO\:0016157] synonym: "SUSACT" RELATED [] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0016157 ! sucrose synthase activity [Term] id: TO:0000700 name: fruit sweetness def: "The quality of having the pleasant taste characteristic of sugar." [GR:pj] synonym: "FRSWEET" RELATED [] synonym: "SWEET" RELATED [] is_a: TO:0002694 ! fruit flavor trait [Term] id: TO:0000701 name: turgor pressure def: "The pressure within the cell resulting from the absorption of water into the vacuole and the imbibition of water by the protoplasm." [GR:pj] synonym: "TURGPRES" RELATED [] is_a: TO:0002683 ! plant cell morphology trait [Term] id: TO:0000702 name: starch concentration def: "Concentration of starch present in the plant or plant part." [GR:pj] synonym: "STARCHCONC" RELATED [] is_a: TO:0006007 ! polysaccharide content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:28017 ! starch [Term] id: TO:0000703 name: amylase activity trait def: "Catalysis of the hydrolysis of amylose or an amylose derivative." [GR:pj] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0016160 ! amylase activity [Term] id: TO:0000704 name: phosphatase activity trait def: "Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate." [GO:GO\:0016791] synonym: "phosphoric monoester hydrolase activity" RELATED [] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0016791 ! phosphatase activity [Term] id: TO:0000705 name: acid phosphatase activity def: "Catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate." [EC:3.1.3.2, GO:0003993] synonym: "ACIDPASEACT" RELATED [] is_a: TO:0000704 ! phosphatase activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in TO:0000705 ! acid phosphatase activity [Term] id: TO:0000706 name: hull color def: "Describes the color of hull." [GR:pj] comment: Hull is the dry outer covering of a grass fruit/grain. The hull is comprised of dry lemma and palea, the two parts of a grass floret. synonym: "HULCL" RELATED [] is_a: TO:0000597 ! quality trait [Term] id: TO:0000707 name: pericarp color def: "A pericarp morphology trait (TO:0000945) that is the color of the pericarp (PO:0009084)." [GR:pj, TO:cooperl] comment: Pericarp is the wall of a fruit, developed from the ovary or carpel wall. Also scored for grain color or color of the dehulled grain in grasses. synonym: "bran color" RELATED [] synonym: "dehulled grain color" RELATED [] synonym: "DHULGRCL" RELATED [] synonym: "grain color" RELATED [] synonym: "PERICARPCL" RELATED [] xref: PATO:0000014 xref: TO_GIT:292 is_a: TO:0000945 ! pericarp morphology trait is_a: TO:0002728 ! fruit quality trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009084 ! pericarp relationship: part_of TO:0002617 ! fruit color [Term] id: TO:0000708 name: plant color def: "A whole plant morphology trait (TO:0000398) which is the color of a whole plant (PO:0000003)." [GR:pj, PO:0000003, TO:cooperl] xref: PATO:0000014 xref: TO_GIT:367 xref: TO_GIT:85 is_a: TO:0000398 ! whole plant morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0000003 ! whole plant [Term] id: TO:0000709 name: leaf gloss def: "A leaf morphology trait (TO:0000748) which is the appearance of glossiness of the leaf surface. Contributed by change in either the amount or content of cuticle wax (PO:0025386) on a leaf (PO:0025034)." [GR:pj] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. is_a: TO:0000748 ! leaf morphology trait [Term] id: TO:0000710 name: globulin protein content def: "Assay to detrmine the amount of globulin proteins." [GR:pj] comment: Globulin proteins also called globular proteins, or spheroproteins are one of the main protein classes. These have a globelike protein structure, that is more or less soluble in aqueous solutions. The two major sub classes are alpha and beta globulins. is_a: TO:0000325 ! soluble protein content is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000711 name: imidazolinone sensitivity def: "An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide imidazolinone." [GR:pj] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. xref: EO:EO\:0007633 is_a: TO:0000058 ! herbicide sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:24781 ! imidazolinone intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0000712 name: sulfonylurea herbicide sensitivity def: "An assay to determine the tolerance exhibited by a plant or a group of plants (population) towards the applied herbicide sulfonylurea." [GR:pj] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. is_a: TO:0000058 ! herbicide sensitivity [Term] id: TO:0000713 name: brittle endosperm def: "An endosperm morphology trait (TO:0000575) which is a brittle endosperm (PO:0009089)." [PO:0009089, TO:moorel] xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality intersection_of: PATO:0001362 ! fragile intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000714 name: seminal rootless def: "Absence of seminal roots in the plant." [GR:pj] synonym: "absence of seminal roots" RELATED [] is_a: TO:0000198 ! rootless intersection_of: PATO:0000462 ! absent intersection_of: inheres_in PO:0000046 ! seminal root intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0000715 name: fascicled ear def: "In maize ears, the floral meristems undergo repeated dichotomous branching, resulting in fascicled (highly branched and bundled or clustered) ears." [GR:pj] is_a: TO:0000267 ! inflorescence type intersection_of: PATO:0001861 ! fasciculated intersection_of: inheres_in PO:0020136 ! ear inflorescence [Term] id: TO:0000716 name: etched endosperm def: "An endosperm morphology trait (TO:0000575) which is an etched endosperm (PO:0009089)." [PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality [Term] id: TO:0000717 name: rough endosperm def: "An endosperm morphology trait (TO:0000575) which is a rough endosperm (PO:0009089)." [PO:0009089, TO:moorel] comment: This is also an endosperm quality trait (TO:0000587). Refers to rough PATO:0000700 A texture quality inhering in a bearer by virtue of the bearer's irregular surface. xref: PATO:0000700 xref: TO_GIT:133 is_a: TO:0000575 ! endosperm morphology trait is_a: TO:0000587 ! endosperm quality intersection_of: PATO:0000700 ! rough intersection_of: inheres_in PO:0009089 ! endosperm [Term] id: TO:0000718 name: wrinkled seed synonym: "wrinkled kernel" RELATED [] is_a: TO:0000931 ! seed quality trait intersection_of: PATO:0001810 ! wrinkled intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0000719 name: leaf vein color def: "A leaf vein morphology trait (TO:0000820) which is the color of a leaf lamina vein (PO:0020138)." [PO:0020138, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0000820 ! leaf vein morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020138 ! leaf lamina vein [Term] id: TO:0000720 name: leaf midrib color is_a: TO:0000719 ! leaf vein color [Term] id: TO:0000721 name: leaf adherence def: "A leaf morphology trait (TO:0000748) which is a tightly rolled leaf encasing the next emerging leaf (PO:0025034)." [GR:pj, PO:0025034\,TO\:cooperl] comment: If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. is_a: TO:0000748 ! leaf morphology trait [Term] id: TO:0000722 name: sporocyte development trait def: "Traits associated with observing effects on the sporocyte development." [GR:pj] is_a: TO:0002686 ! cell growth and development trait [Term] id: TO:0000723 name: microsporocyte development trait def: "Traits associated with observing effects on the microsporocyte development." [GR:pj] is_a: TO:0000722 ! sporocyte development trait [Term] id: TO:0000724 name: megasporocyte development trait def: "Traits associated with observing effects on the megasporocyte development." [GR:pj] is_a: TO:0000722 ! sporocyte development trait [Term] id: TO:0000725 name: megasporocyte number def: "A count of the number of megasporocyte that is done to determine any increase or decrease in number." [GR:pj] is_a: TO:0000724 ! megasporocyte development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0000431 ! megasporocyte [Term] id: TO:0000726 name: microsporocyte number def: "A count of the number of microsporocyte that is done to determine any increase or decrease in number." [GR:pj] is_a: TO:0000723 ! microsporocyte development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0020047 ! microsporocyte [Term] id: TO:0000727 name: sporogenesis def: "The formation of spores." [GR:pj] is_a: TO:0000283 ! biological process trait [Term] id: TO:0000728 name: cell cycle trait def: "The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle or mitotic cell cycle." [R:pj] synonym: "cell division cycle" RELATED [] xref: GO:GO\:0007049 is_a: TO:0002686 ! cell growth and development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0007049 ! cell cycle [Term] id: TO:0000729 name: meiotic cell cycle trait def: "The traits associated with various developmental landmarks and processes of cell division during either the meiotic cell cycle." [GR:pj] comment: Meiosis is a type of cell division in which haploid gametes and spores are formed. The process involves a single duplication of the genetic material followed by two mitotic divisions. As a result each daughter cell receives half the chromosomal content (haploid) as the parent cell. xref: GO:GO\:0051321 is_a: TO:0000728 ! cell cycle trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0051321 ! meiotic cell cycle [Term] id: TO:0000730 name: mitotic cell cycle trait def: "The traits associated with various developmental landmarks and processes of cell division during the mitotic cell cycle." [GO:pj] comment: Mitosis is a type of cell division in which a cell duplicates its genetic information (DNA), in order to generate two, identical, daughter cells. Each daughter cell receives the same chromosome number / genetic content as the parent cell. xref: GO:GO\:0000278 is_a: TO:0000728 ! cell cycle trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0000278 ! mitotic cell cycle [Term] id: TO:0000731 name: lignin content def: "Measures the lignin content in a plant or plant part." [GR:pj] is_a: TO:0000281 ! metabolite content trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:6457 ! lignin [Term] id: TO:0000732 name: lignin monomer content is_a: TO:0000731 ! lignin content [Term] id: TO:0000733 name: lignin biosynthesis trait def: "Traits associated with the biosynthesis of lignin in a plant or plant part." [GR:pj] synonym: "lignin biosynthesis" RELATED [] xref: GO:GO\:0009809 is_a: TO:0000283 ! biological process trait [Term] id: TO:0000734 name: grain length alt_id: TO:0002760 def: "A fruit length (TO:0002626) of the dehulled grain with pericarp (PO:0009084)." [GR:pj, PO:0009084, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "DHULGRLG" RELATED [] synonym: "GRLG" RELATED [] synonym: "KERLG" RELATED [] synonym: "kernel length" RELATED [] synonym: "length of dehulled grain" RELATED [] synonym: "length of grain without hull" RELATED [] xref: PATO:0000122 is_a: TO:0002626 ! fruit length [Term] id: TO:0000735 name: plastochron def: "The time between the initiation of two leaves on the shoot apical meristem is called a plastochron." [GR:pj] is_a: TO:0000655 ! leaf growth and development trait [Term] id: TO:0000736 name: plant organ morphology trait def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a plant organ (PO:0009008)." [PO:0009008, POC:cooperl] xref: TO_GIT:55 is_a: TO:0000836 ! multi-tissue plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009008 ! plant organ created_by: moorel creation_date: 2012-04-19T10:36:57Z [Term] id: TO:0000737 name: plant aspect def: "A stature or vigor trait (TO:0000133) that is a qualitative score of the visual appeal (ideotype) of the whole plant (PO:0000003)." [TO:curators] comment: Includes visual scoring of plant characteristics such as plant height (TO:0000207), uniformity of plants, plant damage by diseases and insects and lodging incidence (TO:0000068). subset: Zea_mays xref: TO_GIT:53 is_a: TO:0000398 ! whole plant morphology trait created_by: moorel creation_date: 2012-04-16T02:18:03Z [Term] id: TO:0000738 name: plant axis morphology trait def: "A plant organ morphology trait (TO:0000736) which is a quality of a plant axis (PO:0025004)." [PO:0025004, POC:cooperl] xref: TO_GIT:55 is_a: TO:0000736 ! plant organ morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025004 ! plant axis created_by: moorel creation_date: 2012-04-19T10:38:30Z [Term] id: TO:0000739 name: shoot axis morphology trait def: "A plant axis morphology trait (TO:0000738) which is a quality of a shoot axis (PO:0025029)." [PO:0025029, POC:cooperl] xref: TO_GIT:55 is_a: TO:0000738 ! plant axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025029 ! shoot axis created_by: moorel creation_date: 2012-04-19T10:40:33Z [Term] id: TO:0000740 name: branch morphology trait def: "A shoot axis morphology trait (TO:0000739) which is a quality of a branch (PO:0025073)." [PO:0025073, POC:cooperl] xref: TO_GIT:56 is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025073 ! branch created_by: moorel creation_date: 2012-04-19T10:42:49Z [Term] id: TO:0000741 name: tuber morphology trait def: "A plant axis morphology trait (TO:0000738) which is quality of a tuber (PO:0004543)." [PO:0004543, TO:cooperl] xref: TO_GIT:56 is_a: TO:0000738 ! plant axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025522 ! tuber created_by: moorel creation_date: 2012-04-19T10:45:11Z [Term] id: TO:0000742 name: subterranean shoot axis tuber morphology trait def: "A tuber morphology trait (TO:0000741) which is a quality of a subterranean tuber (PO:0004547)." [PO:0004547, TO:cooperl] subset: Solanaceae_spp xref: TO_GIT:56 is_a: TO:0000741 ! tuber morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0004547 ! subterranean shoot axis tuber created_by: moorel creation_date: 2012-04-19T10:46:10Z [Term] id: TO:0000743 name: subterranean shoot axis tuber shape def: "A subterranean tuber morphology trait (TO:0000742) which is the shape of a subterranean tuber (PO:0004547)." [PO:0004547, POC:cooperl] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). subset: Solanaceae_spp synonym: "tuber shape" BROAD [] xref: PATO:0000052 xref: TO_GIT:56 is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0004547 ! subterranean shoot axis tuber created_by: moorel creation_date: 2012-04-19T10:48:44Z [Term] id: TO:0000744 name: subterranean shoot axis tuber size def: "A subterranean tuber morphology trait (TO:0000742) which is the size of a subterranean tuber (PO:0004547)." [PO:0004547, POC:cooperl] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. subset: Solanaceae_spp synonym: "tuber size" BROAD [] xref: PATO:0000117 xref: TO_GIT:56 is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0004547 ! subterranean shoot axis tuber created_by: moorel creation_date: 2012-04-19T10:51:20Z [Term] id: TO:0000745 name: subterranean shoot axis tuber appearance def: "A subterranean tuber morphology trait (TO:0000742) which is the appearance of a subterranean tuber (PO:0004547)." [PO:0004547, POC:cooperl] comment: A 1-9 scale is used to score the overall appearance of the tuber, with 1 the lowest score (very poor) and 9 the highest (excellent). subset: Solanaceae_spp synonym: "tuber appearance" BROAD [] xref: TO_GIT:56 is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait created_by: moorel creation_date: 2012-04-19T10:54:11Z [Term] id: TO:0000746 name: subterranean shoot axis tuber mass def: "A subterranean tuber morphology trait (TO:0000742) which is the mass of a subterranean tuber (PO:0004547)." [PO:0004547, POC:cooperl] comment: Refer to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. subset: Solanaceae_spp synonym: "tuber mass" BROAD [] xref: PATO:0000125 xref: TO_GIT:56 is_a: TO:0000742 ! subterranean shoot axis tuber morphology trait intersection_of: PATO:0000125 ! mass intersection_of: inheres_in PO:0004547 ! subterranean shoot axis tuber created_by: moorel creation_date: 2012-04-19T10:56:34Z [Term] id: TO:0000747 name: phyllome morphology trait def: "A plant organ morphology trait (TO:0000736) which is quality of a phyllome (PO:0006001)." [PO:0006001, POC:cooperl] xref: TO_GIT:60 is_a: TO:0000736 ! plant organ morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0006001 ! phyllome created_by: moorel creation_date: 2012-04-25T01:09:12Z [Term] id: TO:0000748 name: leaf morphology trait def: "A phyllome morphology trait (TO:0000747) which is quality of a leaf (PO:0025034)." [PO:0025034, POC:cooperl] subset: Zea_mays xref: TO_GIT:60 is_a: TO:0000747 ! phyllome morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025034 ! leaf created_by: moorel creation_date: 2012-04-25T01:16:59Z [Term] id: TO:0000749 name: cotyledon morphology trait def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a cotyledon (PO:0020030)." [PO:0020030, POC:cooperl] xref: TO_GIT:61 is_a: TO:0000419 ! vascular leaf morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020030 ! cotyledon created_by: moorel creation_date: 2012-04-25T01:18:38Z [Term] id: TO:0000750 name: seedling cotyledon color def: "A seedling cotyledon morphology trait (TO:0000774) which is the color of a seedling cotyledon (PO:0025471)." [PO:0025471, POC:cooperl] xref: PATO:0000014 xref: TO_GIT:61 is_a: TO:0000774 ! seedling cotyledon morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025471 ! seedling cotyledon created_by: moorel creation_date: 2012-04-25T01:38:00Z [Term] id: TO:0000751 name: seedling cotyledon number def: "A seedling cotyledon morphology trait (TO:0000774) which is the number of seedling cotyledons (PO:0025471)." [PO:0025471, POC:cooperl] xref: PATO:0000070 xref: TO_GIT:61 is_a: TO:0000774 ! seedling cotyledon morphology trait created_by: moorel creation_date: 2012-04-25T01:43:38Z [Term] id: TO:0000752 name: seedling cotyledon size def: "A seedling cotyledon morphology trait (TO:0000774) which is the size of a seedling cotyledon (PO:0025471)." [PO:0025471, POC:cooperl] xref: PATO:0000117 xref: TO_GIT:60 is_a: TO:0000774 ! seedling cotyledon morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0025471 ! seedling cotyledon created_by: moorel creation_date: 2012-04-25T01:47:23Z [Term] id: TO:0000753 name: coleoptile morphology trait def: "A plant organ morphology trait (TO:0000736) which is a quality of a coleoptile (PO:0020033)." [PO:0020033, POC:cooperl] xref: TO_GIT:62 is_a: TO:0000736 ! plant organ morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020033 ! coleoptile created_by: moorel creation_date: 2012-04-26T12:12:50Z [Term] id: TO:0000754 name: cardinal organ part morphology trait def: "A cardinal organ part of a multi-tissue plant structure morphology trait (TO:0000837) which is a quality of a cardinal organ part (PO:0025001)." [PO:0025001, POC:cooperl, TO:moorel] xref: TO_GIT:63 is_a: TO:0000837 ! cardinal part of a multi-tissue plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025001 ! cardinal organ part created_by: moorel creation_date: 2012-04-26T13:09:13Z [Term] id: TO:0000755 name: shoot axis internode morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a shoot axis internode (PO:0005005)." [PO:0005005, POC:cooperl] xref: TO_GIT:64 is_a: TO:0000754 ! cardinal organ part morphology trait created_by: moorel creation_date: 2012-04-26T13:12:37Z [Term] id: TO:0000756 name: stem internode morphology trait def: "A shoot axis internode morphology trait (TO:0000755) which is a quality of a stem internode (PO:0020142)." [PO:0020142, TO:cooperl] xref: TO_GIT:64 is_a: TO:0000755 ! shoot axis internode morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020142 ! stem internode created_by: moorel creation_date: 2012-04-26T13:17:31Z [Term] id: TO:0000757 name: hypocotyl morphology trait def: "A stem internode morphology trait (TO:0000756) which is a quality of a hypocotyl (PO:0020100)." [PO:0020100, TO:cooperl] xref: TO_GIT:64 is_a: TO:0000756 ! stem internode morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020100 ! hypocotyl created_by: moorel creation_date: 2012-04-26T13:21:05Z [Term] id: TO:0000758 name: mesocotyl morphology trait def: "A stem internode morphology trait (TO:0000756) which is a quality of a mesocotyl (PO:0020037)." [PO:0020037, POC:cooperl] xref: TO_GIT:64 is_a: TO:0000756 ! stem internode morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020037 ! mesocotyl created_by: moorel creation_date: 2012-04-26T13:30:24Z [Term] id: TO:0000759 name: seedling hypocotyl color def: "A seedling hypocotyl morphology trait (TO:0000769) which is the color of a seedling hypocotyl (PO:0025291)." [PO:0025291, POC:cooperl] comment: The color of a seedling hypocotyl (PO:0025291) during the hypocotyl emergence stage (PO:0007043). xref: PATO:0000014 xref: TO_GIT:64 is_a: TO:0000769 ! seedling hypocotyl morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: moorel creation_date: 2012-04-26T13:41:13Z [Term] id: TO:0000760 name: seedling hypocotyl green def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green." [PATO:0000320, PO:0020100, POC:cooperl] comment: Refers to green (PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers. xref: PATO:0000014 xref: PATO:0000320 is_a: TO:0000759 ! seedling hypocotyl color intersection_of: PATO:0000320 ! green intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: moorel creation_date: 2012-04-30T13:15:20Z [Term] id: TO:0000761 name: seedling hypocotyl green with bronze band def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color green with a bronze band." [PATO:0000320, PO:0020100, POC:cooperl] comment: Refers to green ((PATO:0000320): A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers) and bronze ((PATO:0002363): A medium brown color with a metallic sheen, resembles the actual alloy bronze). xref: PATO:0000014 xref: PATO:0000320 xref: PATO:0002363 is_a: TO:0000759 ! seedling hypocotyl color created_by: moorel creation_date: 2012-04-30T13:16:51Z [Term] id: TO:0000762 name: seedling hypocotyl purple def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color purple." [PATO:0000951, PO:0020100, POC:cooperl] comment: Refers to purple (PATO:0000951): A color that falls about midway between red and blue in hue. xref: PATO:0000014 xref: PATO:0000951 is_a: TO:0000759 ! seedling hypocotyl color intersection_of: PATO:0000951 ! purple intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: moorel creation_date: 2012-04-30T13:18:41Z [Term] id: TO:0000763 name: seedling hypocotyl dark purple def: "A seedling hypocotyl color trait (TO:0000759) where a hypocotyl (PO:0020100) is observed to have the color dark purple." [PATO:0001259, PO:0020100, POC:cooperl] comment: Refers to dark purple (PATO:0001259): A color consisting of purple color and low brightness. xref: PATO:0000014 xref: PATO:0001259 is_a: TO:0000759 ! seedling hypocotyl color intersection_of: PATO:0001259 ! dark purple intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: moorel creation_date: 2012-04-30T13:20:07Z [Term] id: TO:0000764 name: stalk morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a stalk (PO:0025066)." [PO:0025066, POC:cooperl] is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025066 ! stalk created_by: moorel creation_date: 2012-04-30T13:27:43Z [Term] id: TO:0000765 name: petiole morphology trait def: "A stalk morphology trait (TO:0000764) which is a quality of a petiole (PO:0020038)." [PO:0020038, POC:cooperl] xref: TO_GIT:87 is_a: TO:0000764 ! stalk morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020038 ! petiole created_by: moorel creation_date: 2012-04-30T13:29:38Z [Term] id: TO:0000766 name: petiole length def: "A petiole morphology trait (TO:0000765) which is the length of a petiole (PO:0020038)." [PO:0020038, POC:cooperl] xref: PATO:0000122 xref: TO_GIT:87 is_a: TO:0000765 ! petiole morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020038 ! petiole created_by: moorel creation_date: 2012-04-30T13:31:22Z [Term] id: TO:0000767 name: petiole shape def: "A petiole morphology trait (TO:0000765) which is the shape of a petiole (PO:0020038)." [PO:0020038, POC:cooperl] xref: PATO:0000052 xref: TO_GIT:87 is_a: TO:0000765 ! petiole morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0020038 ! petiole created_by: moorel creation_date: 2012-04-30T13:33:50Z [Term] id: TO:0000768 name: petiole size def: "A petiole morphology trait (TO:0000765) which is the size of a petiole (PO:0020038)." [PO:0020038, POC:cooperl] xref: PATO:0000117 xref: TO_GIT:87 is_a: TO:0000765 ! petiole morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0020038 ! petiole created_by: moorel creation_date: 2012-04-30T13:37:02Z [Term] id: TO:0000769 name: seedling hypocotyl morphology trait def: "A hypocotyl morphology trait (TO:0000757) which a seedling hypocotyl (PO:0025291)." [PO:0025291, POC:cooperl] comment: Use this term to describe traits for a seedling hypocotyl (PO:002529; a hypocotyl (PO:0020100) that is part of a whole plant (PO:0000003) in the seedling development stage (PO:0007131)). is_a: TO:0000757 ! hypocotyl morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: moorel creation_date: 2012-05-03T12:51:59Z [Term] id: TO:0000770 name: bacterial blight disease resistance def: "A bacterial disease resistance (TO:0000315) that is involved in the response to bacterial blight disease." [POC:cooperl] xref: TO_GIT:66 is_a: TO:0000315 ! bacterial disease resistance created_by: moorel creation_date: 2012-05-04T13:30:57Z [Term] id: TO:0000771 name: embryo hypocotyl morphology trait def: "A hypocotyl morphology trait (TO:0000757) which is a quality of an embryo hypocotyl (PO:0025290)." [PO:0025290, POC:cooperl] comment: Use this term to describe traits for embryo hypocotyl (A hypocotyl (PO:0020100) that is part of a plant embryo (PO:0009009)). is_a: TO:0000757 ! hypocotyl morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025290 ! embryo hypocotyl created_by: moorel creation_date: 2012-05-04T13:47:12Z [Term] id: TO:0000772 name: seedling mesocotyl morphology trait def: "A mesocotyl morphology trait (TO:0000758) which is a quality of a seedling mesocotyl (PO:0025295)." [PO:0025295, POC:cooperl] comment: Use this term to descride traits for seedling mesocotyl (PO:0025295: A seedling mesocotyl is an elongation of and embryonic mesocotyl that is part of a whole plant in the seedling phase). is_a: TO:0000758 ! mesocotyl morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025295 ! seedling mesocotyl created_by: moorel creation_date: 2012-05-04T13:52:34Z [Term] id: TO:0000773 name: embryo mesocotyl morphology trait def: "A mesocotyl morphology trait (TO:0000758) which is a quality of an embryo mesocotyl (PO:0025294)." [PO:0025294, POC:cooperl] is_a: TO:0000758 ! mesocotyl morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025294 ! embryo mesocotyl created_by: moorel creation_date: 2012-05-04T13:57:56Z [Term] id: TO:0000774 name: seedling cotyledon morphology trait def: "A cotyledon morphology trait (TO:0000749) which is a quality of a seedling cotyledon (PO:0025471)." [PO:0025471, POC:cooperl] comment: Use this term to describe traits for a seedling cotyledon ((PO:0025471):A cotyledon (PO:0020030) that is part of a whole plant (PO:0000003) in the seedling development stage (PO:0007131)). xref: TO_GIT:61 is_a: TO:0000749 ! cotyledon morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025471 ! seedling cotyledon created_by: moorel creation_date: 2012-05-11T12:28:54Z [Term] id: TO:0000775 name: plant embryo cotyledon morphology trait def: "A cotyledon morphology trait (TO:0000749) which is a quality of a plant embryo cotyledon (PO:0025470)." [PO:0025470, POC:cooperl] comment: Use this term to describe traits for an plant embryo cotyledon (PO:0025470): A cotyledon (PO:0020030) that is part of a plant embryo (PO:0009009). is_a: TO:0000749 ! cotyledon morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025470 ! plant embryo cotyledon created_by: moorel creation_date: 2012-05-11T12:34:04Z [Term] id: TO:0000776 name: peduncle morphology trait def: "A shoot axis morphology trait (TO:0000739) which is a quality of a peduncle (PO:0009053)." [PO:0009053, POC:cooperl] subset: Cucurbita subset: Hordeum_vulgare subset: Triticum_aestivum xref: TO_GIT:88 is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009053 ! peduncle created_by: moorel creation_date: 2012-05-17T12:28:05Z [Term] id: TO:0000777 name: peduncle waxiness def: "A peduncle morphology trait (TO:0000776) which is a quality of the presence of cuticular wax (PO:0025386)." [PO:0025386, TO:cooperl] subset: Triticum_aestivum xref: TO_GIT:88 is_a: TO:0000776 ! peduncle morphology trait intersection_of: PATO:0002381 ! waxiness intersection_of: inheres_in PO:0009053 ! peduncle created_by: moorel creation_date: 2012-05-17T12:29:02Z [Term] id: TO:0000778 name: peduncle type def: "A peduncle morphology trait (TO:0000776) which is the type of a peduncle (PO:0009053)." [PO:0009053, POC:cooperl] subset: Hordeum_vulgare is_a: TO:0000776 ! peduncle morphology trait created_by: moorel creation_date: 2012-05-17T13:54:47Z [Term] id: TO:0000779 name: peduncle color def: "A peduncle morphology trait (TO:0000776) which is the color of a peduncle (PO:0009053)." [PO:0009053, POC:cooperl] comment: Refers to the color ((PATO:0000014):A composite chromatic quality composed of hue, saturation and intensity parts) of a peduncle (PO:0009053). subset: Cucurbita xref: PATO:0000014 is_a: TO:0000776 ! peduncle morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009053 ! peduncle created_by: moorel creation_date: 2012-05-17T13:58:50Z [Term] id: TO:0000780 name: peduncle attachment def: "A peduncle morphology trait (TO:0000776) which is the attachment quality of a peduncle (PO:0009053)." [PO:0009053, POC:cooperl] comment: Refers to the attachment quatlity ((PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity) of a peduncle (PO:0009053). subset: Cucurbita synonym: "pod attachment" RELATED [] xref: PATO:0001435 is_a: TO:0000776 ! peduncle morphology trait created_by: moorel creation_date: 2012-05-17T14:01:07Z [Term] id: TO:0000781 name: seedling hypocotyl size def: "A seedling hypocotyl morphology trait (TO:0000769) which is the size of a seedling hypocotyl (PO:0025291)." [PO:0025291, POC:cooperl] subset: Zea_mays xref: PATO:0000117 is_a: TO:0000769 ! seedling hypocotyl morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: moorel creation_date: 2012-05-17T14:19:59Z [Term] id: TO:0000782 name: inflorescence axis morphology trait def: "A shoot axis morphology trait (TO:0000739) which is a quality of an inflorescence axis (PO:0020122)." [PO:0020122, POC:cooperl] is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020122 ! inflorescence axis created_by: moorel creation_date: 2012-05-17T14:39:45Z [Term] id: TO:0000783 name: inflorescence axis size def: "An inflorescence morphology trait (TO:0000782) which is the size of an inflorescence axis (PO:0020122)." [PO:0020122, POC:cooperl] comment: Refers to the size ((PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude) of an inflorescence axis (PO:0020122). subset: Hordeum_vulgare xref: PATO:0000117 is_a: TO:0000782 ! inflorescence axis morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0020122 ! inflorescence axis created_by: moorel creation_date: 2012-05-17T14:42:14Z [Term] id: TO:0000784 name: inflorescence branch morphology trait def: "A inflorescence axis morphology trait (TO:0000782) which is a quality of an inflorescence branch (PO:0009081)." [PO:0009081, TO:cooperl] is_a: TO:0000782 ! inflorescence axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009081 ! inflorescence branch created_by: moorel creation_date: 2012-05-18T13:25:20Z [Term] id: TO:0000785 name: tassel branch morphology trait def: "An inflorescence branch morphology trait (TO:0000784) which is a quality of a tassel branch (PO:0006323)." [PO:0006323, POC:coopler] xref: TO_GIT:89 is_a: TO:0000784 ! inflorescence branch morphology trait created_by: moorel creation_date: 2012-05-18T13:29:07Z [Term] id: TO:0000786 name: reproductive shoot system morphology trait def: "A shoot system morphology trait (TO:0000077) that is a quality of a reproductive shoot system (PO:0025082)." [PO:0025082, TO:cooperl] xref: TO_GIT:57 is_a: TO:0000077 ! shoot system morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025082 ! reproductive shoot system created_by: moorel creation_date: 2012-05-18T13:35:01Z [Term] id: TO:0000787 name: inflorescence waxiness def: "An inflorescence morphology trait (TO:0000373) which is the waxiness of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] subset: Hordeum_vulgare is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0002381 ! waxiness intersection_of: inheres_in PO:0009049 ! inflorescence created_by: moorel creation_date: 2012-05-18T13:38:09Z [Term] id: TO:0000788 name: tassel inflorescence morphology trait def: "An inflorescence morphology trait (TO:0000373) which is a quality of a tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] subset: Zea_mays xref: TO_GIT:89 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020126 ! tassel inflorescence created_by: moorel creation_date: 2012-05-18T13:45:59Z [Term] id: TO:0000789 name: bud morphology trait def: "A shoot system morphology trait (TO:0000077) which is a quality of a bud (PO:0000055)." [PO:0000055, TO:cooperl] xref: TO_GIT:91 is_a: TO:0000077 ! shoot system morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0000055 ! bud created_by: moorel creation_date: 2012-05-24T13:52:40Z [Term] id: TO:0000790 name: axillary bud morphology trait def: "A bud morphology trait (TO:0000789) which is a quality of an axillary bud (PO:0004709)." [PO:0004709, POC:cooperl] subset: Saccharum xref: TO_GIT:91 is_a: TO:0000789 ! bud morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0004709 ! axillary bud created_by: moorel creation_date: 2012-05-24T13:55:08Z [Term] id: TO:0000791 name: axillary bud size def: "An axillary bud morphology trait (TO:0000790) which the size of an axillary bud (PO:0004709)." [PO:0004709, POC:cooperl] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. subset: Saccharum xref: PATO:0000117 xref: TO_GIT:91 is_a: TO:0000790 ! axillary bud morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0004709 ! axillary bud created_by: moorel creation_date: 2012-05-30T13:20:21Z [Term] id: TO:0000792 name: axillary bud number def: "An axillary bud morphology trait (TO:0000790) which is the number of axillary buds (PO:0004709) on a stalk or stem." [PO:0004709, POC:cooperl] comment: Refer to number (PATO:0001056). subset: Saccharum xref: PATO:0001056 xref: TO_GIT:91 is_a: TO:0000790 ! axillary bud morphology trait created_by: moorel creation_date: 2012-05-30T13:23:10Z [Term] id: TO:0000793 name: axillary bud shape def: "An axillary bud morphology trait (TO:0000790) which is the shape of an axillary bud (PO:0004709)." [PO:0004709, POC:cooperl] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). subset: Saccharum xref: PATO:0000052 xref: TO_GIT:91 is_a: TO:0000790 ! axillary bud morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0004709 ! axillary bud created_by: moorel creation_date: 2012-05-30T13:25:45Z [Term] id: TO:0000794 name: axillary bud prominence def: "An axillary bud morphology trait (TO:0000790) which is the prominence of an axillary bud (PO:0004709)." [PO:0004709, POC:cooperl] comment: Refer to prominent (PATO:0014820): A protruding quality inhering in a bearer by virtue of the bearer's standing out or projecting beyond a surface or line. Promenence categorized by hidden, medium or exposed. subset: Saccharum xref: PATO:0014820 xref: TO_GIT:91 is_a: TO:0000790 ! axillary bud morphology trait created_by: moorel creation_date: 2012-05-30T13:29:13Z [Term] id: TO:0000795 name: tassel inflorescence color def: "A tassel inflorescence morphology trait (TO:0000788) which is the color of a tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. subset: Zea_mays xref: PATO:0000014 xref: TO_GIT:89 is_a: TO:0000788 ! tassel inflorescence morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020126 ! tassel inflorescence created_by: moorel creation_date: 2012-05-30T13:56:54Z [Term] id: TO:0000796 name: tassel inflorescence circumference def: "A tassel inflorescence morphology trait (TO:0000788) which is the circumference of a tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] comment: Refer to circumference PATO:0001684: An 1-D extent quality which is equal to the length of the closed curve of a circle. subset: Zea_mays xref: PATO:0001684 xref: TO_GIT:89 is_a: TO:0000788 ! tassel inflorescence morphology trait intersection_of: PATO:0001648 ! circumference intersection_of: inheres_in PO:0020126 ! tassel inflorescence created_by: moorel creation_date: 2012-05-30T14:00:19Z [Term] id: TO:0000797 name: tassel inflorescence height def: "A tassel inflorescence morphology trait (TO:0000788) which is the height of a tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] comment: Refer to height PATO:0000119: A 1-D extent quality inhering in a bearer by virtue of the bearer's vertical dimension of extension. subset: Zea_mays xref: PATO:0000119 xref: TO_GIT:89 is_a: TO:0000788 ! tassel inflorescence morphology trait intersection_of: PATO:0000119 ! height intersection_of: inheres_in PO:0020126 ! tassel inflorescence created_by: moorel creation_date: 2012-05-30T14:04:13Z [Term] id: TO:0000798 name: tassel inflorescence length def: "A tassel inflorescence morphology trait (TO:0000788) which is the length of a tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. subset: Zea_mays xref: PATO:0000122 xref: TO_GIT:89 is_a: TO:0000788 ! tassel inflorescence morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020126 ! tassel inflorescence created_by: moorel creation_date: 2012-05-30T14:06:52Z [Term] id: TO:0000799 name: tassel inflorescence diameter def: "A tassel inflorescence morphology trait (TO:0000788) which is the diameter of a tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] comment: Refer to diameter PATO:0001334: A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. subset: Zea_mays xref: PATO:0001334 xref: TO_GIT:89 is_a: TO:0000788 ! tassel inflorescence morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0020126 ! tassel inflorescence created_by: moorel creation_date: 2012-05-30T14:09:31Z [Term] id: TO:0000800 name: inflorescence density def: "An inflorescence morphology trait (TO:0000373) which is the density of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to absolute density PATO:0001070. synonym: "head density" NARROW [] xref: PATO:0001070 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait created_by: moorel creation_date: 2012-06-01T13:16:10Z [Term] id: TO:0000801 name: inflorescence depth def: "An inflorescence morphology trait (TO:0000373) which is the depth of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to depth PATO:0001595: A 1-D extent quality inhering in a bearer by virtue of the bearer's downward or backward or inward dimenision. synonym: "head depth" NARROW [] xref: PATO:0001595 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0001595 ! depth intersection_of: inheres_in PO:0009049 ! inflorescence created_by: moorel creation_date: 2012-06-01T13:18:51Z [Term] id: TO:0000802 name: inflorescence diameter alt_id: TO:0000679 def: "An inflorescence morphology trait (TO:0000373) which with the diameter of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. synonym: "head diameter" NARROW [] xref: PATO:0001334 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0009049 ! inflorescence created_by: moorel creation_date: 2012-06-01T13:20:49Z [Term] id: TO:0000803 name: inflorescence weight def: "An inflorescence morphology trait (TO:0000373) which is the weight of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to weight PATO:0000128:A physical quality inhering in a bearer that has mass near a gravitational body. synonym: "head weight" NARROW [] xref: PATO:0000128 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0009049 ! inflorescence created_by: moorel creation_date: 2012-06-01T13:23:12Z [Term] id: TO:0000804 name: inflorescence width alt_id: TO:0000637 def: "An inflorescence morphology trait (TO:0000373) which is the width of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: " INFLWD" RELATED [] synonym: "head width" NARROW [] xref: PATO:0000921 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009049 ! inflorescence relationship: part_of TO:0006031 ! inflorescence size created_by: moorel creation_date: 2012-06-01T13:25:43Z [Term] id: TO:0000805 name: inflorescence texture def: "An inflorescence morphology trait (TO:0000373) which with the texture of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. synonym: "head texture" NARROW [] xref: PATO:0000150 xref: TO_GIT:92 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000150 ! texture intersection_of: inheres_in PO:0009049 ! inflorescence created_by: moorel creation_date: 2012-06-01T13:28:08Z [Term] id: TO:0000806 name: inflorescence presence def: "An inflorescence morphology trait (TO:0000373) which is the presence of an inflorescence (PO:0009049)." [PO:0009049, POC:cooperl] comment: Refer to presence value PATO:0000458. xref: PATO:0000458 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait created_by: moorel creation_date: 2012-06-01T13:30:09Z [Term] id: TO:0000807 name: pseudostem morphology trait def: "A collective organ part structure morphology trait (TO:0000841) which is a quality of a pseudostem (PO:0025248)." [PO:0025248, TO:cooperl] subset: Allium_porrum xref: TO_GIT:94 xref: TO_GIT:96 is_a: TO:0000841 ! collective organ part structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025248 ! pseudostem created_by: moorel creation_date: 2012-06-01T13:35:28Z [Term] id: TO:0000808 name: pseudostem length def: "A pseudostem morphology trait (TO:0000807) which is the length of a pseudostem (PO:0025248)." [PO:0025248, TO:cooperl] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. subset: Allium_porrum xref: PATO:0000122 xref: TO_GIT:94 is_a: TO:0000807 ! pseudostem morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025248 ! pseudostem created_by: moorel creation_date: 2012-06-01T13:38:37Z [Term] id: TO:0000809 name: pseudostem shape def: "A pseudostem morphology trait (TO:0000807) which is the shape of a pseudostem (PO:0025248)." [PO:0025248, TO:cooperl] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). subset: Allium_porrum xref: PATO:0000052 xref: TO_GIT:94 xref: TO_GIT:96 is_a: TO:0000807 ! pseudostem morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0025248 ! pseudostem created_by: moorel creation_date: 2012-06-01T13:40:25Z [Term] id: TO:0000810 name: pseudostem color def: "A pseudostem morphology trait (TO:0000807) which is the color of a pseudostem (PO:0025248)." [PO:0025248, TO:cooperl] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. subset: Allium_porrum xref: PATO:0000014 xref: TO_GIT:94 xref: TO_GIT:96 is_a: TO:0000807 ! pseudostem morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025248 ! pseudostem created_by: moorel creation_date: 2012-06-01T13:43:28Z [Term] id: TO:0000811 name: pseudostem diameter def: "A pseudostem morphology trait (TO:0000807) which is the diameter of a pseudostem (PO:0025248)." [PO:0025248, TO:cooperl] comment: Refer to diameter PATO:0001334:A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. subset: Allium_porrum xref: PATO:0001334 xref: TO_GIT:94 xref: TO_GIT:96 is_a: TO:0000807 ! pseudostem morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0025248 ! pseudostem created_by: moorel creation_date: 2012-06-01T13:45:05Z [Term] id: TO:0000812 name: tassel branch dry weight def: "A tassel branch morphology trait (TO:0000785) which is the dry weight of a tassel branch (PO:0006323) prior to pollen shed." [PO:0006323, POC:cooperl] comment: Refer to dry PATO:0001824: A wetness quality inhering in a bearer by virtue of the bearer's not being covered by a liquid. \nRefer to weight PATO:0000128: A physical quality inhering in a bearer that has mass near a gravitational body. xref: PATO:0000128 xref: PATO:0001824 xref: TO_GIT:89 is_a: TO:0000785 ! tassel branch morphology trait created_by: moorel creation_date: 2012-06-26T12:37:26Z [Term] id: TO:0000813 name: tassel branch number def: "A tassel branch morphology trait (TO:0000785) which is the number of tassel branches (PO:0006323)." [PO:0006323, POC:cooperl] comment: Refer to number PATO:0001056. xref: PATO:0001056 xref: TO_GIT:89 is_a: TO:0000785 ! tassel branch morphology trait created_by: moorel creation_date: 2012-06-26T12:40:53Z [Term] id: TO:0000814 name: tassel inflorescence type def: "A tassel inflorescence morphology trait (TO:0000788) which is the type of tassel inflorescence (PO:0020126)." [PO:0020126, POC:cooperl] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 xref: TO_GIT:89 is_a: TO:0000788 ! tassel inflorescence morphology trait created_by: moorel creation_date: 2012-06-26T12:47:20Z [Term] id: TO:0000815 name: bract morphology trait def: "A phyllome morphology trait (TO:0000747) which is a quality of a bract (PO:0009055)." [PO:0009055, POC:cooperl] synonym: "" RELATED [] xref: TO_GIT:109 is_a: TO:0000747 ! phyllome morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009055 ! bract created_by: moorel creation_date: 2012-06-26T14:29:09Z [Term] id: TO:0000816 name: inflorescence bract morphology trait def: "A bract morphology trait (TO:0000815) which is the quality of an inflorescence bract (PO:0009054)." [PO:0009054, TO:cooperl] synonym: "husk" EXACT [] xref: TO_GIT:110 is_a: TO:0000815 ! bract morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009054 ! inflorescence bract created_by: moorel creation_date: 2012-06-26T14:31:08Z [Term] id: TO:0000817 name: inflorescence bract length def: "An inflorescence bract morphology trait (TO:0000816) which is the length of an inflorescence bract (PO:0009054)." [PO:0009054, POC:cooperl] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. subset: Zea_mays synonym: "husk length" EXACT [] xref: PATO:0000122 xref: TO_GIT:110 is_a: TO:0000816 ! inflorescence bract morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009054 ! inflorescence bract created_by: moorel creation_date: 2012-06-26T14:34:28Z [Term] id: TO:0000818 name: inflorescence bract cover def: "An inflorescence bract morphology trait (TO:0000816) which is the cover of an inflorescence bract (PO:0009054) measured as percentage of plants with ears that are not completely covered by the inflorescence bracts." [PO:0009054, POC:cooperl] subset: Zea_mays synonym: "husk cover" EXACT [] xref: TO_GIT:110 is_a: TO:0000816 ! inflorescence bract morphology trait created_by: moorel creation_date: 2012-06-26T14:38:41Z [Term] id: TO:0000819 name: inflorescence bract color def: "An inflorescence bract morphology trait (TO:0000819) which is the color of an inflorescence bract (PO:0009054)." [PO:0009054, POC:cooperl] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. subset: Zea_mays synonym: "husk color" EXACT [] xref: PATO:0000014 xref: TO_GIT:110 is_a: TO:0000816 ! inflorescence bract morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009054 ! inflorescence bract created_by: moorel creation_date: 2012-06-26T14:41:14Z [Term] id: TO:0000820 name: leaf vein morphology trait def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a leaf lamina vein (PO:0020138)." [PO:0020138, POC:cooperl] xref: TO_GIT:91 is_a: TO:0000419 ! vascular leaf morphology trait created_by: moorel creation_date: 2012-07-02T11:39:41Z [Term] id: TO:0000821 name: leaf vein size def: "A leaf vein morphology trait (TO:0000820) which is the size of a leaf lamina vein (PO:0020138)." [PO:0020138, POC:cooperl] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 xref: TO_GIT:91 is_a: TO:0000820 ! leaf vein morphology trait created_by: moorel creation_date: 2012-07-02T11:45:41Z [Term] id: TO:0000822 name: leaf midvein morphology trait def: "A leaf vein morphology trait (TO:0000820) which is a quality of a leaf midvein (PO:0020139)." [PO:0020139, POC:cooperl] synonym: "leaf midrib" BROAD [] xref: TO_GIT:91 is_a: TO:0000820 ! leaf vein morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020139 ! leaf midvein created_by: moorel creation_date: 2012-07-02T11:51:56Z [Term] id: TO:0000823 name: leaf midvein thickness def: "A leaf midvein morphology trait (TO:0000822) which is the thickness of a leaf midvein (PO:0020139)." [PO:0020139, POC:cooperl] comment: Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. synonym: "leaf midrib" BROAD [] xref: PATO:0000915 xref: TO_GIT:91 is_a: TO:0000822 ! leaf midvein morphology trait intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0020139 ! leaf midvein created_by: moorel creation_date: 2012-07-02T11:56:25Z [Term] id: TO:0000824 name: leaf attitude def: "A leaf morphology trait (TO:0000748) which is the attitude of a leaf (PO:0025034)." [PO:0025034, TO:cooperl] comment: Leaf attitude traits refer to the way a leaf is naturally held on the plant. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. xref: TO_GIT:91 is_a: TO:0000748 ! leaf morphology trait created_by: moorel creation_date: 2012-07-02T12:06:18Z [Term] id: TO:0000825 name: leaf flexibility def: "A leaf morphology trait (TO:0000748) which is the flexibility of a leaf (PO:0025034)." [PO:0025034, POC:cooperl] comment: Refer to flexibility (PATO:0001543): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. xref: PATO:0001543 xref: TO_GIT:91 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0001543 ! flexibility intersection_of: inheres_in PO:0025034 ! leaf created_by: moorel creation_date: 2012-07-02T12:12:45Z [Term] id: TO:0000826 name: leaf volume def: "A leaf morphology trait (TO:0000748) which is the volume of a leaf (PO:0025034)." [PO:0025034, TO:cooperl] comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. xref: PATO:0000918 xref: TO_GIT:91 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000918 ! volume intersection_of: inheres_in PO:0025034 ! leaf created_by: moorel creation_date: 2012-07-02T12:21:58Z [Term] id: TO:0000827 name: leaf lamina area def: "A leaf lamina morphology trait (TO:0000829) which is the area of a leaf lamina (PO:0020039)." [PO:0020039, POC:cooperl] comment: Refer to area (PATO:0001323): A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent. xref: PATO:0001323 xref: TO_GIT:91 is_a: TO:0000829 ! leaf lamina morphology trait intersection_of: PATO:0001323 ! area intersection_of: inheres_in PO:0020039 ! leaf lamina created_by: moorel creation_date: 2012-07-02T12:30:01Z [Term] id: TO:0000828 name: leaf cover def: "A leaf morphology trait (TO:0000748) which is a quality of the cover of a leaf (PO:0025034)." [PO:0025034, POC:cooperl] xref: TO_GIT:91 is_a: TO:0000748 ! leaf morphology trait created_by: moorel creation_date: 2012-07-02T12:36:51Z [Term] id: TO:0000829 name: leaf lamina morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina (PO:0020039)." [PO:0020039] is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020039 ! leaf lamina created_by: moorel creation_date: 2012-07-02T13:36:23Z [Term] id: TO:0000830 name: leaf lamina margin morphology trait def: "A leaf margin morphology trait (TO:0002635)which is a quality of a leaf lamina margin (PO:0025009)." [PO:0025009, TO:moorel] xref: TO_GIT:142 is_a: TO:0002635 ! leaf margin morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025009 ! leaf lamina margin created_by: moorel creation_date: 2012-07-02T13:58:07Z [Term] id: TO:0000831 name: adult leaf morphology trait def: "A vascular leaf morphology trait (TO:0000419) which is a quality of an adult vascular leaf (PO:0006340)." [PO:0006340, TO:moorel] xref: TO_GIT:141 is_a: TO:0000419 ! vascular leaf morphology trait created_by: moorel creation_date: 2012-07-03T11:54:31Z [Term] id: TO:0000832 name: flag leaf morphology trait def: "An adult vascular leaf morphology trait (TO:0000831) which is a quality of a flag leaf (PO:0020103)." [PO:0020103, TO:moorel] xref: TO_GIT:141 is_a: TO:0000831 ! adult leaf morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020103 ! flag leaf created_by: moorel creation_date: 2012-07-03T12:06:07Z [Term] id: TO:0000833 name: organ margin morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a organ margin (PO:0025005)." [PO:0025005, TO:moorel] xref: TO_GIT:142 is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025005 ! organ margin created_by: moorel creation_date: 2012-07-03T12:54:18Z [Term] id: TO:0000834 name: phyllome margin morphology trait def: "An organ margin morphology trait (TO:0000833) which is a quality of a phyllome margin (PO:0025018)." [PO:0025018, TO:moorel] xref: TO_GIT:142 is_a: TO:0000833 ! organ margin morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025018 ! phyllome margin created_by: moorel creation_date: 2012-07-03T12:56:42Z [Term] id: TO:0000835 name: leaf sheath morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath (PO:0020104)." [PO:0020104, TO:moorel] xref: TO_GIT:143 is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020104 ! leaf sheath created_by: moorel creation_date: 2012-07-03T13:07:07Z [Term] id: TO:0000836 name: multi-tissue plant structure morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a multi-tissue plant structure (PO:0025496)." [PO:0025496, TO:moorel] xref: TO_GIT:147 is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025496 ! multi-tissue plant structure created_by: moorel creation_date: 2012-07-09T11:41:28Z [Term] id: TO:0000837 name: cardinal part of a multi-tissue plant structure morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a cardinal organ part of a multi-tissue plant structure (PO:0025498)." [PO:0025498, TO:moorel] xref: TO_GIT:147 is_a: TO:0000839 ! plant structure morphology trait created_by: moorel creation_date: 2012-07-09T13:36:14Z [Term] id: TO:0000838 name: seed coat morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the seed coat (PO:0009088)." [PO:0009088, TO:moorel] xref: TO_GIT:76 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009088 ! seed coat created_by: moorel creation_date: 2012-07-11T11:29:01Z [Term] id: TO:0000839 name: plant structure morphology trait def: "A plant morphology trait (TO:0000017) which is a quality of a plant structure (PO:0009011)." [PO:0009011, TO:cooperl, TO:moorel] xref: TO_GIT:149 is_a: TO:0000017 ! plant morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009011 ! plant structure created_by: moorel creation_date: 2012-07-12T11:29:26Z [Term] id: TO:0000840 name: collective plant structure morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a collective plant structure (PO:0025497)." [PO:0025497, TO:cooperl, TO:moorel] xref: TO_GIT:150 is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025497 ! collective plant structure created_by: moorel creation_date: 2012-07-12T11:42:53Z [Term] id: TO:0000841 name: collective organ part structure morphology trait def: "A collective plant structure morphology trait (TO:0000840) which is a quality of a collective organ part structure (PO:0025269)." [PO:0025269, TO:cooperl, TO:moorel] xref: TO_GIT:150 is_a: TO:0000840 ! collective plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025269 ! collective organ part structure created_by: moorel creation_date: 2012-07-12T11:49:46Z [Term] id: TO:0000842 name: collective plant organ structure morphology trait def: "A collective plant structure morphology trait (TO:0000840) which is a quality of a collective plant organ structure (PO:0025007)." [PO:0025007, TO:cooperl, TO:moorel] xref: TO_GIT:150 is_a: TO:0000840 ! collective plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025007 ! collective plant organ structure created_by: moorel creation_date: 2012-07-12T11:55:17Z [Term] id: TO:0000843 name: portion of plant tissue morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a portion of plant tissue (PO:0009007)." [PO:0009007, TO:moorel] xref: TO_GIT:151 is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009007 ! portion of plant tissue created_by: moorel creation_date: 2012-07-12T12:18:33Z [Term] id: TO:0000844 name: in vitro plant structure morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of an in vitro plant structure (PO:0000004)." [PO:0000004, TO:moorel] xref: TO_GIT:149 is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0000004 ! in vitro plant structure created_by: moorel creation_date: 2012-07-12T13:52:02Z [Term] id: TO:0000845 name: collective phyllome structure morphology trait def: "A collective plant organ structure morphology trait (TO:0000842) which is a quality of a collective phyllome structure (PO:0025023)." [PO:0025023, TO:cooperl, TO:moorel] synonym: "" RELATED [] xref: TO_GIT:304 is_a: TO:0000842 ! collective plant organ structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025023 ! collective phyllome structure created_by: moorel creation_date: 2012-07-13T11:30:15Z [Term] id: TO:0000846 name: inflorescence primary branch morphology trait def: "An inflorescence branch morphology trait (TO:0000784) which is a quality of a second order inflorescence axis (PO:0006321)." [PO:0006321, TO:moorel] is_a: TO:0000784 ! inflorescence branch morphology trait created_by: moorel creation_date: 2012-07-13T13:09:22Z [Term] id: TO:0000847 name: panicle morphology trait def: "An inflorescence morphology trait (TO:0000373) which is a quality of a panicle." [TO:cooperl, TO:moorel] synonym: "panicle related trait" RELATED [] xref: TO_GIT:154 is_a: TO:0000373 ! inflorescence morphology trait created_by: moorel creation_date: 2012-07-13T13:43:22Z [Term] id: TO:0000848 name: fruit diameter def: "A fruit size trait (TO:0002625) which is the diameter of a fruit (PO:0009001)." [PO:0009001, TO:moorel] comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. xref: PATO:0001334 is_a: TO:0002625 ! fruit size intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0009001 ! fruit created_by: moorel creation_date: 2012-07-16T12:31:27Z [Term] id: TO:0000849 name: fruit attachment def: "A fruit morphology trait (TO:0002629) which is the attachment of a fruit (PO:0009001)." [PO:0009001, TO:moorel] comment: Refer to attachment quality (PATO:0001435): A structural quality inhering in a bearer by virtue of the bearer's having connection or association with another entity. xref: PATO:0001435 is_a: TO:0002629 ! fruit morphology trait created_by: moorel creation_date: 2012-07-16T12:39:53Z [Term] id: TO:0000850 name: fruit type def: "A fruit morphology trait (TO:0002629) which is the type of a fruit (PO:0009001)." [PO:0009001, TO:moorel] is_a: TO:0002629 ! fruit morphology trait created_by: moorel creation_date: 2012-07-16T12:45:56Z [Term] id: TO:0000851 name: fruit hairiness def: "A fruit morphology trait (TO:0002629) which is the presence or absence of hair on a fruit (PO:0009001)." [PO:0009001, TO:moorel] comment: Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. xref: PATO:0000454 xref: TO_GIT:131 is_a: TO:0002629 ! fruit morphology trait created_by: moorel creation_date: 2012-07-16T12:48:45Z [Term] id: TO:0000852 name: fruit set def: "A fruit morphology trait (TO:0002629) which is the absence or presence of a fruit (PO:0009001)." [TO:moorel] comment: In cassava fruit set is a visual rating with 0 = absent and 1 = present. xref: TO_GIT:131 is_a: TO:0002629 ! fruit morphology trait created_by: moorel creation_date: 2012-07-16T12:53:17Z [Term] id: TO:0000853 name: floret shape def: "A floret morphology trait (TO:0000274) which is the shape of a floret." [TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 xref: TO_GIT:105 is_a: TO:0000274 ! floret morphology trait created_by: moorel creation_date: 2012-07-16T13:05:08Z [Term] id: TO:0000854 name: floret size def: "A floret morphology trait (TO:0000274) which is the size of a floret." [TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. xref: PATO:0000117 xref: TO_GIT:105 is_a: TO:0000274 ! floret morphology trait created_by: moorel creation_date: 2012-07-16T13:08:42Z [Term] id: TO:0000855 name: floret diameter def: "A floret morphology trait (TO:0000274) which is the diameter of a floret." [TO:moorel] comment: Refer to diameter (PATO:0001334):A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. xref: PATO:0001334 xref: TO_GIT:105 is_a: TO:0000274 ! floret morphology trait created_by: moorel creation_date: 2012-07-16T13:11:57Z [Term] id: TO:0000856 name: lodicule length def: "A lodiclue morphology trait (TO:0006009) which is the length of a lodicule (PO:0009036)." [PO:0009036, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 xref: TO_GIT:105 is_a: TO:0006009 ! lodicule morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009036 ! lodicule created_by: moorel creation_date: 2012-07-16T13:47:12Z [Term] id: TO:0000857 name: lodicule type def: "A lodicule morphology trait (TO:0006009) which is the type of lodicule (PO:0009036)." [PO:0009036, TO:moorel] xref: TO_GIT:105 is_a: TO:0006009 ! lodicule morphology trait created_by: moorel creation_date: 2012-07-16T13:51:17Z [Term] id: TO:0000858 name: flower diameter def: "A flower morphology trait (TO:0000499) which is the diameter of a flower (PO:0009046)." [PO:0009046, TO:moorel] comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. xref: PATO:0001334 xref: TO_GIT:105 is_a: TO:0000499 ! flower morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0009046 ! flower created_by: moorel creation_date: 2012-07-25T10:16:56Z [Term] id: TO:0000859 name: flower shape def: "A flower morphology trait (TO:0000499) which is the shape of a flower (PO:0009046)." [PO:0009046, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 xref: TO_GIT:105 is_a: TO:0000499 ! flower morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009046 ! flower created_by: moorel creation_date: 2012-07-25T10:21:29Z [Term] id: TO:0000860 name: flower length def: "A flower morphology trait (TO:0000499) which is the length of a flower (PO:0009046)." [PO:0009046, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 xref: TO_GIT:105 is_a: TO:0000499 ! flower morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009046 ! flower created_by: moorel creation_date: 2012-07-25T10:27:25Z [Term] id: TO:0000861 name: flower abscission zone morphology trait def: "A flower morphology trait (TO:0000499) which is a quality of the flower abscission zone (PO:0006502)." [PO:0006502, TO:moorel] xref: TO_GIT:105 is_a: TO:0000499 ! flower morphology trait created_by: moorel creation_date: 2012-07-25T10:30:55Z [Term] id: TO:0000862 name: floral organ morphology trait def: "A plant organ morphology trait (TO:0000736) which is a quality of a floral organ (PO:0025395)." [PO:0025395, TO:moorel] xref: TO_GIT:160 is_a: TO:0000736 ! plant organ morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025395 ! floral organ created_by: moorel creation_date: 2012-07-25T10:47:57Z [Term] id: TO:0000863 name: petal morphology trait def: "A phyllome morphology trait (TO:0000747) which is a quality of a petal (PO:0009032)." [PO:0009032, TO:moorel] xref: TO_GIT:161 is_a: TO:0000747 ! phyllome morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009032 ! petal created_by: moorel creation_date: 2012-07-25T11:18:56Z [Term] id: TO:0000864 name: sepal morphology trait def: "A phyllome morphology trait (TO:0000747) which is a quality of a sepal (PO:0009031)." [PO:0009031, TO:moorel] xref: TO_GIT:161 is_a: TO:0000747 ! phyllome morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009031 ! sepal created_by: moorel creation_date: 2012-07-25T11:22:26Z [Term] id: TO:0000865 name: tepal morphology trait def: "A phyllome morphology trait (TO:0000747) which is a quality of a tepal (PO:0009033)." [PO:0009033, TO:moorel] xref: TO_GIT:161 is_a: TO:0000747 ! phyllome morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009033 ! tepal created_by: moorel creation_date: 2012-07-25T12:19:50Z [Term] id: TO:0000866 name: sporophyll morphology trait def: "A phyllome morphology trait (TO:0000747) which is a quality of a sporophyll (PO:0009026)." [PO:0009026, TO:moorel] xref: TO_GIT:162 is_a: TO:0000747 ! phyllome morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009026 ! sporophyll created_by: moorel creation_date: 2012-07-25T13:04:01Z [Term] id: TO:0000867 name: megasporophyll morphology trait def: "A sporophyll morphology trait (TO:0000866) which is a quality of a megasporophyll (PO:0009027)." [PO:0009027, TO:moorel] xref: TO_GIT:162 is_a: TO:0000866 ! sporophyll morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009027 ! megasporophyll created_by: moorel creation_date: 2012-07-25T13:05:52Z [Term] id: TO:0000868 name: microsporophyll morphology trait def: "A sporophyll morphology trait (TO:0000866) which is a quality of a microsporophyll (PO:0009028)." [PO:0009028, TO:moorel] is_a: TO:0000866 ! sporophyll morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009028 ! microsporophyll created_by: moorel creation_date: 2012-07-25T13:07:55Z [Term] id: TO:0000869 name: glume morphology trait def: "An inflorescence bract morphology trait (TO:0000816) which is a quality of a glume (PO:0009039)." [PO:0009039, TO:moorel] xref: TO_GIT:166 is_a: TO:0000816 ! inflorescence bract morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009039 ! glume relationship: part_of TO:0000657 ! spikelet morphology trait created_by: moorel creation_date: 2012-08-08T11:50:03Z [Term] id: TO:0000870 name: leaf yield trait def: "A shoot system yield trait (TO:0000327) which is comprised of leaves (PO:0025034) or parts of leaves." [TO:cooperl] is_a: TO:0000327 ! shoot system yield trait created_by: moorel creation_date: 2012-10-04T15:42:58Z [Term] id: TO:0000871 name: fruit yield trait def: "A shoot system yield trait (TO:0000327) which is the yield of fruits (PO:0009001)." [TO:cooperl] xref: TO_GIT:291 is_a: TO:0000327 ! shoot system yield trait relationship: has_part TO:0000894 ! fruit number trait relationship: has_part TO:0002625 ! fruit size relationship: has_part TO:0002746 ! fruit weight created_by: moorel creation_date: 2012-10-04T15:45:03Z [Term] id: TO:0000872 name: leaf erect def: "A leaf attitude (TO:0000824) which is a leaf held upright away from the substrate or host." [TO:moorel] comment: Refer to erect (PATO:0000622): A positional quality inhering in a bearer by virtue of the bearer's being upright in position or posture. xref: PATO:0000622 is_a: TO:0000824 ! leaf attitude intersection_of: PATO:0000622 ! erect intersection_of: inheres_in PO:0025034 ! leaf created_by: moorel creation_date: 2012-10-09T13:55:46Z [Term] id: TO:0000873 name: leaf prostrate def: "A leaf attitude (TO:0000824) which is a leaf hanging straight down." [TO:moorel] comment: Refer to prostrate (PATO:0000631): A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground. xref: PATO:0000631 is_a: TO:0000824 ! leaf attitude intersection_of: PATO:0000631 ! prostrate intersection_of: inheres_in PO:0025034 ! leaf created_by: moorel creation_date: 2012-10-09T14:01:24Z [Term] id: TO:0000874 name: leaf penduloum def: "A leaf attitude (TO:0000824) which is a leaf laying flat against the substrate or host." [TO:moorel] is_a: TO:0000824 ! leaf attitude created_by: moorel creation_date: 2012-10-09T14:04:08Z [Term] id: TO:0000875 name: leaf lamina splitting def: "A leaf lamina morphology trait (TO:0000829) which is the splitting of a leaf lamina (PO:0020039)." [PO:0020039, TO:moorel] comment: Refer to split (PATO:0001786): A shape quality inhering in a bearer by virtue of the bearer's being divided or broken up into parts or divisions. xref: PATO:0001786 xref: TO_GIT:91 is_a: TO:0000829 ! leaf lamina morphology trait created_by: moorel creation_date: 2012-10-09T14:11:08Z [Term] id: TO:0000876 name: spine leaf morphology trait def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a spine leaf (PO:0025173)." [PO:0025173, TO:moorel] xref: TO_GIT:158 is_a: TO:0000419 ! vascular leaf morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025173 ! spine leaf created_by: moorel creation_date: 2012-10-09T14:46:53Z [Term] id: TO:0000877 name: spine leaf size def: "A spine leaf morphology trait (TO:0000876) which is the size of the spine leaf (PO:0025173)." [PO:0025173, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 xref: TO_GIT:158 is_a: TO:0000876 ! spine leaf morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0025173 ! spine leaf created_by: moorel creation_date: 2012-10-09T14:48:19Z [Term] id: TO:0000878 name: spine leaf color def: "A spine leaf morphology trait (TO:0000876) which is the color of the spine leaf (PO:0025173)." [PO:0025173, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 xref: TO_GIT:158 is_a: TO:0000876 ! spine leaf morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025173 ! spine leaf created_by: moorel creation_date: 2012-10-09T14:52:10Z [Term] id: TO:0000879 name: stem hairiness def: "A stem morphology trait (TO:0000361) which is the presence or absence of hair on the stem (PO:0009047)." [PO:0009047, TO:moorel] comment: Refer to hairy (PATO:0000454): A pilosity quality inhering in a bearer by virtue of the bearer's being covered with hair or hairlike projections. xref: PATO:0000454 is_a: TO:0000361 ! stem morphology trait created_by: moorel creation_date: 2012-10-09T15:17:12Z [Term] id: TO:0000880 name: seed coat length def: "A seed coat morphology trait (TO:0000838) which is the length of the seed coat (PO:0009088)." [PO:0009088, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 xref: TO_GIT:76 is_a: TO:0000838 ! seed coat morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009088 ! seed coat created_by: moorel creation_date: 2012-10-09T15:27:02Z [Term] id: TO:0000881 name: flower type def: "A flower morphology trait (TO:0000499) which is the type of a flower (PO:0009046)." [PO:0009046, TO:moorel] xref: TO_GIT:175 is_a: TO:0000499 ! flower morphology trait created_by: moorel creation_date: 2012-10-11T11:30:45Z [Term] id: TO:0000882 name: cleistogamus flower def: "A flower type trait (TO:0000881) which is a flower (PO:0009046) that does not open and favors self pollination." [PO:0009046, TO:moorel] xref: TO_GIT:175 is_a: TO:0000881 ! flower type created_by: moorel creation_date: 2012-10-11T11:33:35Z [Term] id: TO:0000883 name: chasmogamous flower def: "A flower type trait (TO:0000881) which is a flower (PO:0009046) that opens exposing anthers (PO:0009066) and/or pistil." [PO:0009046, PO:0009066, TO:moorel] xref: TO_GIT:175 is_a: TO:0000881 ! flower type created_by: moorel creation_date: 2012-10-11T11:37:02Z [Term] id: TO:0000884 name: petiolule morphology trait def: "A stalk morphology trait (TO:0000764) which is a quality of a petiolule (PO:0020050)." [PO:0020050, TO:moorel] xref: TO_GIT:176 is_a: TO:0000764 ! stalk morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020050 ! petiolule created_by: moorel creation_date: 2012-10-11T11:53:06Z [Term] id: TO:0000885 name: petiolule color def: "A petiolule morphology trait (TO:0000884) which is the color of the petiolule (PO:0020050)." [PO:0020050, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 xref: TO_GIT:176 is_a: TO:0000884 ! petiolule morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020050 ! petiolule created_by: moorel creation_date: 2012-10-11T11:55:06Z [Term] id: TO:0000886 name: petiolule shape def: "A petiolule morphology trait (TO:0000884) which is the shape of the petiolule (PO:0020050)." [PO:0020050, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 xref: TO_GIT:176 is_a: TO:0000884 ! petiolule morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0020050 ! petiolule created_by: moorel creation_date: 2012-10-11T12:02:02Z [Term] id: TO:0000887 name: petiolule length def: "A petiolule morphology trait (TO:0000884) which is the length of the petiolule (PO:0020050)." [PO:0020050, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 xref: TO_GIT:176 is_a: TO:0000884 ! petiolule morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020050 ! petiolule created_by: moorel creation_date: 2012-10-11T12:05:48Z [Term] id: TO:0000888 name: seed coat luster def: "A seed coat morphology trait (TO:0000838) which is the luster of the seed coat (PO:0009088)." [PO:0009088, TO:moorel] xref: TO_GIT:148 xref: TO_GIT:76 is_a: TO:0000838 ! seed coat morphology trait created_by: moorel creation_date: 2012-10-11T12:26:54Z [Term] id: TO:0000889 name: seed coat hardness def: "A seed coat morphology trait (TO:0000838) which is the hardness of the seed coat (PO:0009088)." [PO:0009088, TO:moorel] comment: Refer to hardness (PATO:0000048): A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking. xref: PATO:0000048 xref: TO_GIT:148 xref: TO_GIT:76 is_a: TO:0000838 ! seed coat morphology trait intersection_of: PATO:0000048 ! hardness intersection_of: inheres_in PO:0009088 ! seed coat created_by: moorel creation_date: 2012-10-11T12:29:15Z [Term] id: TO:0000890 name: seed coat proportion def: "A seed coat morphology trait (TO:0000838) which is the relative proportion of seed coat (PO:0009088) to cotyledon (PO:0020030)." [PO:0009088, PO:0020030, TO:moorel] comment: Refer to proportion (PATO:0001470): A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity. xref: PATO:0001470 xref: TO_GIT:148 is_a: TO:0000838 ! seed coat morphology trait created_by: moorel creation_date: 2012-10-11T12:32:02Z [Term] id: TO:0000891 name: leaf wet weight def: "A leaf weight trait (TO:0000505) which is the the measure of the wet weight of a leaf (PO:0025034)." [PO:0025034, TO:moorel] is_a: TO:0000505 ! leaf weight created_by: moorel creation_date: 2012-10-11T12:50:20Z [Term] id: TO:0000892 name: stem size def: "A stem morphology trait (TO:0000361) which is the size of a stem (PO:0009047)." [PO:0009047, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. synonym: "core size" NARROW [] synonym: "stalk size" RELATED [] xref: PATO:0000117 xref: TO_GIT:157 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009047 ! stem created_by: moorel creation_date: 2012-11-20T15:35:42Z [Term] id: TO:0000893 name: stem shape def: "A stem morphology trait (TO:0000361) which is the shape of a stem (PO:0009047)." [PO:0009047, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "core shape" NARROW [] xref: PATO:0000052 xref: TO_GIT:80 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009047 ! stem created_by: moorel creation_date: 2012-11-20T15:44:05Z [Term] id: TO:0000894 name: fruit number trait def: "An infructescence morphology trait (TO:0000920) which is the number of fruits (PO:0009001)." [PO:0009001, TO:moorel] comment: Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. synonym: "accessory fruit number" NARROW [] xref: PATO:0001555 xref: TO_GIT:178 is_a: TO:0000920 ! infructescence morphology trait created_by: moorel creation_date: 2013-01-24T14:03:35Z [Term] id: TO:0000895 name: fruit harvest index def: "A harvest index (TO:0000128) which is the percent of usable fruit (PO:0009001)." [PO:0009001, TO:moorel] xref: TO_GIT:179 is_a: TO:0000128 ! harvest index created_by: moorel creation_date: 2013-01-24T14:15:17Z [Term] id: TO:0000896 name: leaf harvest index def: "A harvest index (TO:0000128) which is the percent of usable leaves (PO:0025034)." [PO:0025034, TO:moorel] xref: TO_GIT:179 is_a: TO:0000128 ! harvest index created_by: moorel creation_date: 2013-01-24T14:19:38Z [Term] id: TO:0000897 name: seed harvest index def: "A harvest index (TO:0000128) which is the percent of usable seeds (PO:0009010)." [PO:0009010, TO:moorel] xref: TO_GIT:179 is_a: TO:0000128 ! harvest index created_by: moorel creation_date: 2013-01-24T14:21:24Z [Term] id: TO:0000898 name: root nodule morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a root nodule (PO:0003023)." [PO:0003023, TO:moorel] xref: TO_GIT:181 is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0003023 ! root nodule created_by: moorel creation_date: 2013-01-24T14:24:48Z [Term] id: TO:0000899 name: root nodule weight def: "A root nodule morphology trait (TO:0000898) which is the weight of a root nodule (PO:0003023)." [PO:0003023, TO:moorel] comment: Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body. xref: PATO:0000128 xref: TO_GIT:181 is_a: TO:0000898 ! root nodule morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0003023 ! root nodule created_by: moorel creation_date: 2013-01-24T14:26:46Z [Term] id: TO:0000900 name: root nodule number def: "A root nodule morphology trait (TO:0000898) which is the number of root nodules (PO:0003023)." [PO:0003023, TO:moorel] comment: Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. xref: PATO:0001555 xref: TO_GIT:181 is_a: TO:0000898 ! root nodule morphology trait created_by: moorel creation_date: 2013-01-24T14:30:27Z [Term] id: TO:0000901 name: dry fruit color def: "A fruit color (TO:0002617) which is the color of a fruit (PO:0009001) that has been dried." [PO:0009001, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. Refer to decreased water composition (PATO:0001801): A composition quality inhering in an bearer by virtue of the reduction in amount of water the bearer contains. synonym: "dry pod color" NARROW [] xref: PATO:0000014 xref: PATO:0001801 xref: TO_GIT:180 is_a: TO:0002617 ! fruit color created_by: moorel creation_date: 2013-01-24T14:37:51Z [Term] id: TO:0000902 name: seed coat pigment bleeding def: "A seed coat morphology trait (TO:0000838) which is the bleeding of pigment in a seed coat (PO:0009088)." [PO:0009088, TO:moorel] xref: TO_GIT:148 is_a: TO:0000838 ! seed coat morphology trait created_by: moorel creation_date: 2013-01-24T14:44:11Z [Term] id: TO:0000903 name: seed coat texture def: "A seed coat morphology trait (TO:0000838) which is the texture of a seed coat (PO:0009088)." [PO:0009088, TO:moorel] comment: Refer to texture (PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. xref: PATO:0000150 xref: TO_GIT:147 is_a: TO:0000838 ! seed coat morphology trait intersection_of: PATO:0000150 ! texture intersection_of: inheres_in PO:0009088 ! seed coat created_by: moorel creation_date: 2013-01-24T14:45:40Z [Term] id: TO:0000904 name: seed coat pattern def: "A seed coat morphology trait (TO:0000838) which is the pattern of a seed coat (PO:0009088)." [PO:0009088, TO:moorel] comment: Refer to color pattern (PATO:0000019): A chromatic property that is the relative position of different hues or degrees of saturation. xref: PATO:0000019 xref: TO_GIT:148 is_a: TO:0000838 ! seed coat morphology trait created_by: moorel creation_date: 2013-01-24T14:48:21Z [Term] id: TO:0000905 name: seed yield trait def: "A shoot system yield trait (TO:0000327) which is the yield of seeds (PO:0009010)." [PO:0009010, TO:cooperl, TO:moorel] xref: TO_GIT:182 is_a: TO:0000371 ! yield trait relationship: has_part TO:0000181 ! seed weight relationship: has_part TO:0000391 ! seed size relationship: has_part TO:0000445 ! fruit seed number created_by: moorel creation_date: 2013-01-28T13:14:23Z [Term] id: TO:0000906 name: exocarp morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the exocarp (PO:0009085)." [PO:cooperl] synonym: "epicarp morphology trait " EXACT [] xref: TO_GIT:117 xref: TO_GIT:295 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009085 ! exocarp created_by: cooperl creation_date: 2013-04-28T15:48:43Z [Term] id: TO:0000907 name: exocarp thickness def: "An exocarp morphology trait (TO:0000906) (TO:0000843) which is the thickness of the exocarp (PO:0009085)." [TO:cooperl] synonym: "rind thickness" EXACT [] xref: PATO:0000915 xref: TO_GIT:117 xref: TO_GIT:295 is_a: TO:0000906 ! exocarp morphology trait is_a: TO:0002728 ! fruit quality trait intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0009085 ! exocarp created_by: cooperl creation_date: 2013-04-28T16:05:01Z [Term] id: TO:0000908 name: fruit hollowness def: "A fruit morphology trait (TO:0002617) which is the hollowness of a fruit (PO:0009001)." [PATO:0002078, PO:0009001, PO:cooperl] xref: TO_GIT:117 is_a: TO:0002629 ! fruit morphology trait is_a: TO:0002728 ! fruit quality trait created_by: cooperl creation_date: 2013-04-28T16:18:53Z [Term] id: TO:0000909 name: fruit color uniformity def: "A fruit color trait (TO:0002617) which is the uniformity of the color (PATO:0000122) of the fruit (PO:0009001) ." [PATO:0000122, PO:cooperl] comment: The proportion of the 2D area of the red color epicarp out of the total epicarp area visible from a top view of the proximal fruit end. xref: TO_GIT:117 is_a: TO:0002617 ! fruit color is_a: TO:0002728 ! fruit quality trait created_by: cooperl creation_date: 2013-04-28T16:33:44Z [Term] id: TO:0000910 name: fruit bitterness trait def: "A fruit flavor trait (TO:0002694) which is the bitter fruit flavor." [TO:cooperl] comment: Need PATO quality: bitter - has been requested. xref: TO_GIT:117 is_a: TO:0002694 ! fruit flavor trait created_by: cooperl creation_date: 2013-04-28T16:46:02Z [Term] id: TO:0000911 name: trichome morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a trichome (PO:0000282)." [PO:0000282, TO:moorel] xref: TO_GIT:228 is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0000282 ! trichome created_by: moorel creation_date: 2013-06-18T14:29:56Z [Term] id: TO:0000912 name: trichome appressed def: "A trichome morphology trait (TO:0000911) which is a trichome (PO:0000282) lying close to and flat against a surface of a plant structure (PO:0009011)." [PO:0000282, TO:moorel] xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait created_by: moorel creation_date: 2013-06-18T14:31:49Z [Term] id: TO:0000913 name: trichome acircular def: "A trichome morphology trait (TO:0000911) which is a needle-shaped trichome (PO:0000282)." [PO:0000282, TO:moorel] xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait created_by: moorel creation_date: 2013-06-19T09:56:45Z [Term] id: TO:0000914 name: trichome canescent def: "A trichome morphology trait (TO:0000911) which is a gray-haired and hoary trichome (PO:0000282)." [PO:0000282, TO:moorel] xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait created_by: moorel creation_date: 2013-06-19T09:59:44Z [Term] id: TO:0000915 name: trichome capillary def: "A trichome morphology trait (TO:0000911) which is a very slender or hair-like trichome (PO:0000282)." [PO:0000282, TO:moorel] xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait created_by: moorel creation_date: 2013-06-19T10:02:55Z [Term] id: TO:0000916 name: trichome clavate def: "A trichome morphology trait (TO:0000911) which is a club-shaped trichome (PO:0000282)." [PO:0000282, TO:moorel] comment: Clavate (PATO:0001883): A concave 3-D shape quality inhering in a bearer by virtue of the bearer's gradually becoming thicker towards the end. xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait intersection_of: PATO:0001883 ! clavate intersection_of: inheres_in PO:0000282 ! trichome created_by: moorel creation_date: 2013-06-19T10:06:59Z [Term] id: TO:0000917 name: trichome ensiform def: "A trichome morphology trait (TO:0000911) which is a sword-shaped trichome (PO:0000282)." [PO:0000282, TO:moorel] comment: Blade-like (PATO:0002235): A tapered shape quality inhering in a bearer by virtue of the bearer's being flat, slender, and tapering to a point. Synonym: ensiform. xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait created_by: moorel creation_date: 2013-06-19T10:14:01Z [Term] id: TO:0000918 name: trichome hirsute def: "A trichome morphology trait (TO:0000911) which is a rough trichome (PO:0000282)." [PO:0000282, TO:moorel] xref: TO_GIT:228 is_a: TO:0000911 ! trichome morphology trait created_by: moorel creation_date: 2013-06-19T10:18:46Z [Term] id: TO:0000919 name: kernel weight def: "A fruit weight (TO:0002746) which is the weight of one or more kernels." [TO:cooperl] synonym: "20 kernel weight" NARROW [] synonym: "kwt" RELATED [MaizeGDB:78154] xref: TO_GIT:242 is_a: TO:0002746 ! fruit weight created_by: cooperl creation_date: 2013-11-14T14:06:21Z [Term] id: TO:0000920 name: infructescence morphology trait def: "A reproductive shoot system morphology trait (TO:0000786) which is a quality of the infructescence (PO:0006342)." [POC:cooperl] xref: TO_GIT:244 is_a: TO:0000786 ! reproductive shoot system morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0006342 ! infructescence created_by: cooperl creation_date: 2013-11-15T13:32:29Z [Term] id: TO:0000921 name: infructescence axis morphology trait def: "A shoot axis morphology trait (TO:0000739) which is a quality of an infructescence axis (PO:0025242)." [TO:cooperl] xref: TO_GIT:243 is_a: TO:0000739 ! shoot axis morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025242 ! infructescence axis created_by: cooperl creation_date: 2013-11-15T15:54:24Z [Term] id: TO:0000922 name: cob weight def: "An infructescence axis morphology trait (TO:0000921) which is the weight of a cob." [TO:moorel] comment: Refers to mass (PATO:0000125) A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. xref: PATO:0000125 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: moorel creation_date: 2014-01-07T12:48:27Z [Term] id: TO:0000923 name: ear weight def: "An ear infructescence morphology trait (TO:0000976) that is the weight of an ear infructescence (PO:0025597)." [TO:cooperl] comment: Refers to mass (PATO:0000125): A physical quality that inheres in a bearer by virtue of the proportion of the bearer's amount of matter. subset: Zea_mays synonym: "earwt" RELATED [MaizeGDB:???] xref: MaizeGDB_QTL:65408 xref: PATO:0000125 xref: TO_GIT:244 is_a: TO:0000583 ! infructescence weight is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0025597 ! ear infructescence created_by: cooperl creation_date: 2013-12-10T20:53:38Z [Term] id: TO:0000924 name: cob color def: "An infructescence axis morphology trait (TO:0000921) which is the color of a cob." [TO:moorel] comment: Refers to color (PATO:0000014) A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "cobpig" RELATED [MaizeGDB_QTL:67275] xref: PATO:0000014 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: moorel creation_date: 2014-01-07T12:50:18Z [Term] id: TO:0000925 name: non-vascular leaf morphology trait def: "A leaf morphology trait (TO:0000748) which is a quality of a non-vascular leaf (PO:0025075)." [PO:0025075, TO:moorel] xref: TO_GIT:246 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025075 ! non-vascular leaf created_by: moorel creation_date: 2014-01-07T13:45:07Z [Term] id: TO:0000926 name: multi-tissue plant structure growth and development trait def: "A plant structure growth and development trait (TO:0000928) that has as primary participant a multi-tissue plant structure (PO:0025496)." [TO:cooperl] xref: TO_GIT:250 is_a: TO:0000928 ! plant structure growth and development trait created_by: cooperl creation_date: 2014-01-16T12:55:32Z [Term] id: TO:0000927 name: plant organ growth and development trait def: "A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a plant organ (PO:0009008)." [TO:cooperl] xref: TO_GIT:251 is_a: TO:0000926 ! multi-tissue plant structure growth and development trait created_by: cooperl creation_date: 2014-01-16T12:57:38Z [Term] id: TO:0000928 name: plant structure growth and development trait def: "A plant growth and development trait (TO:0000357) which is a quality of a plant structure development stage (PO:0009028)." [TO:cooperl] xref: TO_GIT:252 is_a: TO:0000357 ! plant growth and development trait created_by: cooperl creation_date: 2014-01-16T13:36:38Z [Term] id: TO:0000929 name: fruit growth and development trait def: "A multi-tissue plant structure development trait (TO:0000927) that has as primary participant a fruit (PO:0009001)." [TO:cooperl] xref: TO_GIT:255 is_a: TO:0000926 ! multi-tissue plant structure growth and development trait created_by: cooperl creation_date: 2014-01-16T14:38:50Z [Term] id: TO:0000930 name: seed shattering def: "A seed growth and development trait (TO:0000653) which is the extent of seed shattering based on the development of an abscission zone (PO:0000146)." [PO:0000146, TO:moorel] synonym: "hilum abscission" RELATED [SOY:0001341] xref: TO_GIT:249 is_a: TO:0000653 ! seed growth and development trait created_by: moorel creation_date: 2014-01-21T10:24:42Z [Term] id: TO:0000931 name: seed quality trait def: "A quality trait (TO:0000597) which is the commercial and /or economical value of a seed (PO:0009010) , or its overall improvement." [TO:cooperl] xref: TO_GIT:209 is_a: TO:0000597 ! quality trait created_by: cooperl creation_date: 2014-03-17T11:41:08Z [Term] id: TO:0000932 name: mannose content def: "A hexose content trait (TO:0000307) which is the amount of mannose (CHEBI:37684)." [TO:cooperl] synonym: "D-mannose content " NARROW [] synonym: "man content " RELATED [] xref: TO_GIT:259 is_a: TO:0000307 ! hexose content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:37684 ! mannose created_by: cooperl creation_date: 2014-04-30T11:28:13Z [Term] id: TO:0000933 name: plant phenological trait def: "A growth and development trait (TO:0000357) which is the timing of the occurrence of plant structure development stages (PO:0009012) and the relevant biological processes (GO:0008150)." [TO:cooperl] xref: TO_GIT:266 is_a: TO:0000357 ! plant growth and development trait created_by: cooperl creation_date: 2014-05-05T17:32:19Z [Term] id: TO:0000934 name: photoperiod-sensitive flowering time trait def: "A flowering time trait (TO:0002616) which is the difference between the time to flowering stage (PO:0007616) in long photoperiod (EO:0007199) and short photoperiod (EO:0007200) environments." [TO:cooperl] synonym: "flowering time response to photoperiod trait" EXACT [] xref: MaizeGDB_QTL:64797 xref: TO_GIT:265 is_a: TO:0000229 ! photoperiod sensitivity trait is_a: TO:0002616 ! flowering time trait created_by: cooperl creation_date: 2014-05-06T16:41:00Z [Term] id: TO:0000935 name: kernel weight per ear def: "A kernel weight (TO:0000919) which is the total weight of all kernels on the primary ear infructescence (PO:0025597)." [MaizeGDB:Mary_Schaeffer, TO:cooperl] xref: OBO_S2F_TO:280 is_a: TO:0000919 ! kernel weight created_by: cooperl creation_date: 2014-06-27T08:27:30Z [Term] id: TO:0000936 name: infructescence yield trait def: "A shoot system yield trait (TO:0000327) which is a quality of an infructescence (PO:0006342), or the number born on a plant." [TO:cooperl] synonym: "seeds per panicle" RELATED [] xref: TO_GIT:285 is_a: TO:0000327 ! shoot system yield trait created_by: cooperl creation_date: 2014-09-02T16:37:45Z [Term] id: TO:0000937 name: kernel number per ear def: "An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per ear infructescence (PO:0025597)." [PMID:22027895, TO:cooperl] comment: Often calculated as the number of kernel rows in the middle of the ear times number of kernels per row. Also calculated based on total weight of kernels for an ear and average weight/kernel (Hung et al 2012). xref: MaizeGDB_QTL:99383 xref: TO_GIT:283 is_a: TO:0000936 ! infructescence yield trait created_by: cooperl creation_date: 2014-09-02T17:16:07Z [Term] id: TO:0000938 name: kernel number per row def: "An infructescence yield trait (TO:0000936) that is the number of kernels (fruit; PO:0009001) per row on an ear infructescence (PO:0025597)." [TO:cooperl] synonym: " 78114 " RELATED [] xref: MaizeGDB_QTL:78114 xref: TO_GIT:284 is_a: TO:0000936 ! infructescence yield trait created_by: cooperl creation_date: 2014-09-02T18:07:39Z [Term] id: TO:0000939 name: tassel spike length xref: TO_GIT:272 is_a: TO:0000798 ! tassel inflorescence length created_by: cooperl creation_date: 2014-09-08T11:52:52Z [Term] id: TO:0000940 name: tassel branch zone length xref: TO_GIT:272 is_a: TO:0000798 ! tassel inflorescence length created_by: cooperl creation_date: 2014-09-08T11:53:39Z [Term] id: TO:0000941 name: rank number per ear def: "An infructescence yield trait (TO:0000936) which is the number of ranks of cupules per ear infructescence (PO:0025597)." [TO:cooperl] comment: Used to look at QTL traits in crosses between Teosinte and maize. In order to compare the two types of ears, the kernel row number (TO:0000687; maize) is divided by two. xref: MaizeGDB_QTL:65770 xref: TO_GIT:288 is_a: TO:0000936 ! infructescence yield trait created_by: cooperl creation_date: 2014-09-08T14:05:22Z [Term] id: TO:0000942 name: aleurone layer morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is the qualities of the aleurone layer (PO:0005360)." [TO:cooperl] subset: Hordeum_vulgare subset: Triticum_aestivum subset: Zea_mays xref: TO_GIT:291 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0005360 ! aleurone layer relationship: part_of TO:0000575 ! endosperm morphology trait created_by: cooperl creation_date: 2015-07-21T15:15:42Z [Term] id: TO:0000943 name: aleurone layer color def: "An aleurone layer appearance (TO:0000944) that is the color of the aleurone layer (PO:0005360)." [TO:cooperl] xref: PATO:0000014 xref: TO_GIT:291 is_a: TO:0000944 ! aleurone layer appearance intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0005360 ! aleurone layer created_by: cooperl creation_date: 2015-07-21T15:16:24Z [Term] id: TO:0000944 name: aleurone layer appearance def: "An aleurone layer morphology trait (TO:0000942) that is the appearance of the aleurone layer (PO:0005360)." [TO:cooperl] xref: TO_GIT:291 is_a: TO:0000942 ! aleurone layer morphology trait created_by: cooperl creation_date: 2015-07-21T16:08:50Z [Term] id: TO:0000945 name: pericarp morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the pericarp (PO:0009084)." [TO:cooperl] xref: TO_GIT:292 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009084 ! pericarp created_by: cooperl creation_date: 2015-07-22T15:54:55Z [Term] id: TO:0000946 name: endocarp morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of the endocarp (PO:0009086)." [TO:austin_meier] xref: TO_GIT:293 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009086 ! endocarp created_by: austinmeier creation_date: 2015-07-22T17:16:05Z [Term] id: TO:0000947 name: whole plant growth and development trait def: "A plant structure growth and development trait (TO:0000928) which is a quality of a whole plant development stage (PO:0007033)." [TO:ethan_johnson] xref: TO_GIT:297 is_a: TO:0000928 ! plant structure growth and development trait created_by: johnseth creation_date: 2015-07-23T14:28:41Z [Term] id: TO:0000948 name: mesocarp morphology trait def: "A portion of plant tissue morphology trait (TO:0000843) which is a quality of a mesocarp (PO:0009087)." [TO:austin_meier] xref: TO_GIT:294 is_a: TO:0000843 ! portion of plant tissue morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009087 ! mesocarp created_by: austinmeier creation_date: 2015-07-22T17:28:39Z [Term] id: TO:0000949 name: seedling growth and development trait def: "A whole plant growth and development trait (TO:0000947) which is a quality of a seedling development stage (PO:0007131)." [TO:ethan_johnson] xref: TO_GIT:298 is_a: TO:0000947 ! whole plant growth and development trait created_by: johnseth creation_date: 2015-07-23T14:39:53Z [Term] id: TO:0000950 name: corolla morphology trait def: "A collective phyllome structure morphology trait (TO:0000845) that is a quality of a corolla (PO:0009059)." [TO:cooperl] xref: TO_GIT:299 is_a: TO:0000845 ! collective phyllome structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009059 ! corolla created_by: cooperl creation_date: 2015-07-27T14:48:47Z [Term] id: TO:0000951 name: corolla color def: "A corolla morphology trait (TO:0000950) that is the color of a corolla (PO:0009059)." [TO:cooperl] xref: PATO:0000014 xref: TO_GIT:299 is_a: TO:0000950 ! corolla morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009059 ! corolla created_by: cooperl creation_date: 2015-07-27T15:41:16Z [Term] id: TO:0000952 name: stem weight def: "A stem morphology trait (TO:0000361) which is the weight of a stem (PO:0009047)." [TO:cooperl] synonym: "stalk weight" NARROW [] xref: PATO:0000128 xref: TO_GIT:157 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0009047 ! stem created_by: cooperl creation_date: 2015-08-27T15:05:35Z [Term] id: TO:0000953 name: stem number def: "A shoot system morphology trait (TO:0000077) which is the number of stems (PO:0009047)." [TO:cooperl] synonym: "stalk number" NARROW [] xref: PATO:0001555 xref: TO_GIT:57 is_a: TO:0000077 ! shoot system morphology trait created_by: johnseth creation_date: 2015-08-27T16:03:16Z [Term] id: TO:0000954 name: spikelet rachilla morphology trait def: "An inflorescence branch morphology trait (TO:0000784) which is a quality of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson] xref: PATO:0000051 xref: TO_GIT:106 is_a: TO:0000784 ! inflorescence branch morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009080 ! spikelet rachilla created_by: johnseth creation_date: 2015-10-19T14:35:34Z [Term] id: TO:0000955 name: cyanide content def: "A metabolite content related trait (TO:0000281) which is the amount of cyanide (CHEBI:17514) occurring in a plant anatomical entity (PO:0025131)." [] xref: CHEBI:17514 is_a: TO:0000281 ! metabolite content trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17514 [Term] id: TO:0000958 name: cob shape def: "An infructescence axis morphology trait (TO:0000921) which is the shape of a cob." [TO:ejohnson] xref: PATO:0000052 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: johnseth creation_date: 2015-09-01T14:35:54Z [Term] id: TO:0000959 name: cob length def: "An infructescence axis morphology trait (TO:0000921) which is the length of a cob." [TO:ejohnson] xref: PATO:0000122 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: johnseth creation_date: 2015-09-01T14:44:47Z [Term] id: TO:0000960 name: cob width def: "An infructescence axis morphology trait (TO:0000921) which is the width of a cob." [TO:ejohnson] xref: PATO:0000921 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: johnseth creation_date: 2015-09-01T14:51:33Z [Term] id: TO:0000961 name: cob area def: "An infructescence axis morphology trait (TO:0000921) which is the area of a cob." [TO:ejohnson] xref: PATO:0001323 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: johnseth creation_date: 2015-09-01T15:00:53Z [Term] id: TO:0000962 name: cob angle def: "An infructescence axis morphology trait (TO:0000921) which is the angle of a cob." [TO:ejohnson] xref: PATO:0002326 xref: TO_GIT:109 is_a: TO:0000921 ! infructescence axis morphology trait created_by: johnseth creation_date: 2015-09-01T15:15:37Z [Term] id: TO:0000963 name: ear color def: "An ear infructescence morphology trait (TO:0000976) which is the color of an ear infructescence (PO:0025597)." [TO:Ethan_Johnson] synonym: "ear infructescence color " EXACT [] xref: PATO:0000014 xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025597 ! ear infructescence created_by: johnseth creation_date: 2015-09-01T15:52:16Z [Term] id: TO:0000964 name: ear shape def: "An ear infructescence morphology trait (TO:0000976) which is the shape of an ear infructescence (PO:0025597)." [TO:Ethan_Johnson] synonym: "ear infructescence shape" EXACT [] xref: PATO:0000052 xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0025597 ! ear infructescence created_by: johnseth creation_date: 2015-09-01T16:07:23Z [Term] id: TO:0000965 name: ear aspect def: "An ear infructescence morphology trait (TO:0000976) which is the qualitative rating of the harvested ear infructescence (PO:0025597)." [TO:Ethan_Johnson] synonym: "ear infructescence aspect" EXACT [] xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait created_by: johnseth creation_date: 2015-09-01T16:12:33Z [Term] id: TO:0000966 name: ear infructescence position ratio def: "An ear infructescence morphology trait (TO:0000976) which is the ratio of ear infructescence position (TO:0000683) to plant height (TO:0000207)." [TO:cooperl, TO:Ethan_Johnson] synonym: "ear position ratio" RELATED [] xref: TO_GIT:132 is_a: TO:0000976 ! ear infructescence morphology trait created_by: johnseth creation_date: 2015-09-01T16:17:13Z [Term] id: TO:0000967 name: hilum morphology trait def: "A seed morphology trait (TO:0000184) which is a quality of a hilum (PO:0020063)." [POC:austin_meier] xref: TO_GIT:81 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020063 ! hilum created_by: meiera creation_date: 2015-10-13T11:16:35Z [Term] id: TO:0000968 name: hilum color def: "A hilum morphology trait (TO:0000967) which is the color of a hilum (PO:0020063)." [POC:austin_meier] xref: TO_GIT:81 is_a: TO:0000967 ! hilum morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020063 ! hilum created_by: meiera creation_date: 2015-10-13T11:19:20Z [Term] id: TO:0000969 name: ear inflorescence morphology trait def: "An inflorescence morphology trait (TO:0000373) which is a quality of an ear inflorescence (PO:0020136)." [TO:cooperl] xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020136 ! ear inflorescence created_by: cooperl creation_date: 2015-10-16T14:24:59Z [Term] id: TO:0000970 name: panicle density def: "An inflorescence density (TO:0000800) trait which is a quality of a panicle (PO:0009049)." [TO:cooperl] xref: TO_GIT:97 is_a: TO:0000800 ! inflorescence density is_a: TO:0000847 ! panicle morphology trait created_by: cooperl creation_date: 2015-10-16T15:23:56Z [Term] id: TO:0000971 name: inflorescence hairiness def: "An inflorescence morphology trait (TO:0000373) which is the presence or absence of hairs on an inflorescence (PO:0009049)." [TO:cooperl] synonym: "head hairiness" NARROW [] xref: PATO:0000454 xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait created_by: cooperl creation_date: 2015-10-16T15:53:14Z [Term] id: TO:0000972 name: spikelet rachilla length def: "An inflorescence branch morphology trait (TO:0000784) which is the length of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson] synonym: "rachilla length " BROAD [] xref: PATO:0000122 xref: TO_GIT:106 is_a: TO:0000954 ! spikelet rachilla morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009080 ! spikelet rachilla created_by: johnseth creation_date: 2015-10-19T14:40:20Z [Term] id: TO:0000973 name: spikelet rachilla shape def: "An inflorescence branch morphology trait (TO:0000784) which is the shape of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson] synonym: "rachilla shape" BROAD [] xref: PATO:0000052 xref: TO_GIT:106 is_a: TO:0000954 ! spikelet rachilla morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009080 ! spikelet rachilla created_by: johnseth creation_date: 2015-10-19T14:46:04Z [Term] id: TO:0000974 name: spikelet rachilla hair type def: "An inflorescence branch morphology trait (TO:0000784) which is the pubescence of a spikelet rachilla (PO:0009080)." [TO:Ethan_Johnson] synonym: "rachilla hair type " BROAD [] xref: PATO:0000454 xref: TO_GIT:106 is_a: TO:0000954 ! spikelet rachilla morphology trait created_by: johnseth creation_date: 2015-10-19T14:47:51Z [Term] id: TO:0000975 name: grain width def: "A fruit width (TO:0002627) which is the variation in the width of a grain (PO:0009001)." [TO:austin_meier] is_a: TO:0002627 ! fruit width created_by: meiera creation_date: 2015-10-20T15:15:19Z [Term] id: TO:0000976 name: ear infructescence morphology trait def: "An infructescence morphology trait (TO:0000920) which is a quality of the ear infructescence (PO:0025597)." [TO:Ethan_Johnson] xref: TO_GIT:132 xref: TO_GIT:144 is_a: TO:0000920 ! infructescence morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025597 ! ear infructescence created_by: johnseth creation_date: 2015-10-22T09:35:32Z [Term] id: TO:0000977 name: leaf foliage rating def: "A leaf size trait (TO:0002637) which is the size of the total surface of a leaf (PO:0025034)." [TO:Ethan_Johnson] comment: Comment: rating scale of 3, small; 5, intermediate; 7 large xref: TO_GIT:139 is_a: TO:0002637 ! leaf size created_by: johnseth creation_date: 2015-10-23T10:29:59Z [Term] id: TO:0000978 name: glume shape def: "A glume morphology trait (TO:0000869) with is the shape of a glume (PO:0009039)." [TO:Ethan_Johnson] xref: TO_GIT:166 is_a: TO:0000869 ! glume morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009039 ! glume created_by: johnseth creation_date: 2015-10-23T10:46:05Z [Term] id: TO:0000979 name: involucre morphology trait def: "A collective phyllome structure morphology trait (TO:0000845) that is a quality of an involucre (PO:0009100)." [TO:Ethan_Johnson] xref: TO_GIT:153 is_a: TO:0000845 ! collective phyllome structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009100 ! involucre created_by: johnseth creation_date: 2015-11-02T15:02:56Z [Term] id: TO:0000980 name: plant embryo cotyledon color def: "A plant embryo cotyledon morphology trait (TO:0000775) which is the color of the plant embryo cotyledon (PO:0025470)." [PATO:0000014] synonym: "plant embryo cotyledon colour" EXACT [] xref: GIT_TO:353 is_a: TO:0000775 ! plant embryo cotyledon morphology trait created_by: TO_austin_meier [Term] id: TO:0000985 name: root system morphology trait def: "A collective plant organ structure morphology trait (TO:0000842) which is a quality of a root system (PO:0025025)." [PO:0025025] {created_by="ethan_johnson"} xref: TO_GIT:359 is_a: TO:0000842 ! collective plant organ structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025025 ! root system created_by: Ethan_Johnson [Term] id: TO:0000986 name: staminate flower number trait def: "A flower number trait (TO:0002736) which is the number of staminate flowers (PO:0025600)." [] synonym: "male flower number trait" EXACT [] xref: PATO:0001555 xref: TO_GIT:356 is_a: TO:0002736 ! flower number trait created_by: ethan_johnson [Term] id: TO:0000987 name: pistillate flower number trait def: "A flower number trait (TO:0002736) which is the number of pistillate flowers (PO:0025599)." [] synonym: "female flower number trait" EXACT [] xref: PATO:0001555 xref: TO_GIT:356 is_a: TO:0002736 ! flower number trait created_by: ethan_johnson [Term] id: TO:0000988 name: shoot-borne shoot system morphology trait def: "A shoot system morphology trait (TO:0000077) that is a quality of a shoot-borne shoot system (PO:0004545)." [] xref: TO_GIT:332 is_a: TO:0000077 ! shoot system morphology trait created_by: ethan_johnson [Term] id: TO:0000989 name: epicormic shoot system morphology trait def: "A shoot-borne shoot system morphology trait (TO:0000988) that is a quality of an epicormic shoot system (PO:0004546)." [] xref: TO_GIT:332 is_a: TO:0000988 ! shoot-borne shoot system morphology trait created_by: ethan_johnson [Term] id: TO:0000990 name: seed hardness def: "A seed morphology trait (TO:0000184) which is the hardness of a seed (PO:0009010)." [] xref: PATO:0000048 is_a: TO:0000184 ! seed morphology trait created_by: ethan_johnson [Term] id: TO:0000991 name: epicormic shoot system number def: "An epicormic shoot system morphology trait (TO:0000989) which is the number of epicormic shoot systems (PO:0004546)." [] synonym: "stem sucker number" EXACT [] xref: TO_GIT:332 is_a: TO:0000989 ! epicormic shoot system morphology trait created_by: ethan_johnson [Term] id: TO:0000992 name: gibberellin biosynthesis trait def: "A biological process trait (TO:0000283) which is a quality of a gibberellin biosynthetic process (GO:0009686)." [] comment: Refers to gibberellin (CHEBI:24250) synonym: "gibberellin biosynthesis" BROAD [] xref: TO_GIT:383 is_a: TO:0000283 ! biological process trait created_by: ethan_johnson [Term] id: TO:0000993 name: cellulose content def: "A carbohydrate content trait (TO:0000291) which is the amount of cellulose (CHEBI:62968) in a plant structure (PO:0009011)." [TO:cooperl] comment: Refers to crystalline cellulose (CHEBI:62968): A (1→4)-β-D-glucan (cellulose) in crystalline form with a structure consisting of several hundred to over ten thousand D-glucose residues joined by β(1→4) glycosidic linkages. xref: TO_GIT:384 is_a: TO:0000291 ! carbohydrate content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18246 created_by: ethan_johnson [Term] id: TO:0000994 name: androecium morphology trait def: "A collective phyllome structure morphology trait (TO:0000845) that is a quality of the androecium (PO:0009061)." [PO:0009061, TO:cooperl] xref: TO_GIT:386 is_a: TO:0000845 ! collective phyllome structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009061 ! androecium created_by: ethan_johnson [Term] id: TO:0001000 name: glume cover def: "A glume morphology trait (TO:0000869) which is amount the glume (PO:0009039) covers the caryopsis. Often measured as percentage." [GR:pj, PO:0009039, TO:moorel] is_a: TO:0000869 ! glume morphology trait [Term] id: TO:0001001 name: glume persistence def: "A glume morphology trait (TO:0000869) which is the persistence of a glume (PO:0009039)." [GR:pj, PO:0009039, TO:moorel] comment: Measured as percentage of kernels or seeds carrying the glume after threshing. In a normal setup the seeds do not have glumes after the threshing process.\nRefer to persistence (PATO:0000082): A rhythm quality inhering in a bearer by virtue of the repetitiveness of bearer's rhythm. xref: PATO:0000082 is_a: TO:0000869 ! glume morphology trait intersection_of: PATO:0002002 ! has extra parts of type intersection_of: inheres_in PO:0009039 ! glume intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0001002 name: inflorescence exsertion def: "An inflorescence morphology trait (TO:0000373) which is the exsertion of an inflorescence (PO:0009049)." [PO:0009049, TO:moorel] xref: TO_GIT:97 is_a: TO:0000373 ! inflorescence morphology trait [Term] id: TO:0001003 name: plant height uniformity def: "A visual estimate of the plant height for a group of plants in an experiment." [GR:pj] is_a: TO:0000207 ! plant height [Term] id: TO:0001004 name: basal tiller number def: "Number of basal tillers per plant, should represent most plants within a study." [GR:pj] synonym: "basal axillary shoot number" RELATED [] is_a: TO:0000346 ! tiller number intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0005001 ! basal axillary shoot system [Term] id: TO:0001005 name: basal tiller length def: "The height of the tallest basal tiller (basal axillary shoot) of a plant." [GR:pj] synonym: "basal tiller height" RELATED [] is_a: TO:0000576 ! stem length intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0005001 ! basal axillary shoot system [Term] id: TO:0001006 name: adventitious root number def: "Average sum of number of adventitious roots in a plant derived per experiment." [GR:pj] is_a: TO:0000084 ! root number [Term] id: TO:0001007 name: coleoptile length def: "A coleoptile morphology trait (TO:0000753) which is the length of a coleoptile (PO:0020033)." [GR:pj, PO:0020033, POC:cooperl] xref: PATO:0000122 xref: TO_GIT:62 is_a: TO:0000753 ! coleoptile morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020033 ! coleoptile [Term] id: TO:0001008 name: days to flag leaf emergence def: "In grass plants the number of days required for the full emergence of the flag leaf in a field or study. It can be counted from date of seed sowing or the transplant (in case of rice)." [GR:pj] is_a: TO:0000655 ! leaf growth and development trait [Term] id: TO:0001009 name: deep root number def: "A count of number of roots present below a given depth from the soil surface." [GR:pj] is_a: TO:0000084 ! root number [Term] id: TO:0001010 name: senesced leaf number def: "Number of leaves in a plant that have undergone leaf senescence stage or are considered dead." [GR:pj] synonym: "dead leaf number" NARROW [] is_a: TO:0000241 ! leaf number [Term] id: TO:0001011 name: deep root weight ratio def: "A ration of the deep root dry weight to total root dry weight per plant." [GR:pj] synonym: "deep root dry weight to total root dry weight ratio" EXACT [] is_a: TO:0000279 ! root weight intersection_of: PATO:0001470 ! proportionality to intersection_of: has_dividend_quality TO:0000081 ! deep root dry weight intersection_of: has_divisor_quality TO:0000078 ! root dry weight [Term] id: TO:0001012 name: lateral root length def: "A root length (TO:0000227) that is the length of one or more lateral roots (PO:0020121)." [GR:pj, TO:austin_meier, TO:seymour_megan] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: GIT_TO:365 xref: PATO:0000122 is_a: TO:0000227 ! root length intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020121 ! lateral root [Term] id: TO:0001013 name: lateral root number def: "Average sum of number of lateral roots in a plant derived per experiment." [GR:pj] is_a: TO:0000084 ! root number intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0020121 ! lateral root [Term] id: TO:0001014 name: leaf dry weight def: "A leaf weight trait (TO:0000505) which is the dry weight of a leaf (PO:0025034)." [GR:pj, PO:0025034, TO:moorel] is_a: TO:0000505 ! leaf weight [Term] id: TO:0001015 name: photosynthetic rate def: "The total amount of carbon fixed by the plant per unit time and is measured by determining the changes in CO2 concentration over a plant leaf in a glass enclosure." [GR:pj] synonym: "gross photosynthetic rate" RELATED [] synonym: "leaf photosynthetic rate" RELATED [] is_a: TO:0000283 ! biological process trait [Term] id: TO:0001016 name: relative chlorophyll content def: "The relative chlorophyll content of the plant determined after a given treatment as compared to the one determined under normal conditions." [GR:pj] is_a: TO:0000495 ! chlorophyll content [Term] id: TO:0001017 name: water use efficiency def: "As determined by the ratio of photosynthetic rate to transpiration rate." [GR:pj] synonym: "photosynthetic rate to transpiration rate ratio" EXACT [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0001018 name: transpiration rate def: "The rate of transpiration." [GR:pj] xref: GO:GO\:0010148 is_a: TO:0000283 ! biological process trait intersection_of: PATO:0000161 ! rate intersection_of: inheres_in GO:0010148 ! transpiration [Term] id: TO:0001019 name: root to total biomass ratio def: "A ratio of root dry weight to total plant dry weight." [GR:pj] synonym: "root dry weight to total plant dry weight ratio" RELATED [] is_a: TO:0000327 ! shoot system yield trait [Term] id: TO:0001020 name: exudate sap volume def: "Volume of the sap exudate collected from the cut parts of a plant." [GR:pj] synonym: "Sap per tiller" RELATED [] is_a: TO:0000281 ! metabolite content trait [Term] id: TO:0001021 name: days to inflorescence exsertion def: "Number of days required for the emergence of inflorescence to become visible on the plant." [GR:pj] comment: Often in grasses it emerges from the flag leaf whcih is the top most leaft on the shoot. synonym: "days to inflorescence emergence" RELATED [] is_a: TO:0000933 ! plant phenological trait [Term] id: TO:0001022 name: days to tassel emergence def: "Number of days required for the tassel to emerge from the flag leaf in a maize plant or a group of plants in a study." [GR:pj] comment: Often determined when the 50% length of the tassel has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds. is_a: TO:0001021 ! days to inflorescence exsertion [Term] id: TO:0001023 name: days to ear shoot emergence def: "Number of days required for the ear shoot to emerge from the given leaf sheath in a maize plant or a group of plants in a study." [GR:pj] comment: Often determined when the 50% length of the ear has emerged as compared to its full length. Number of days is calculated from the day of sowing of the seeds. is_a: TO:0001021 ! days to inflorescence exsertion [Term] id: TO:0001024 name: phosphorus content def: "A mineral and ion content trait (TO:0000465) which is the amount of phosphorous (CHEBI:28659) in a plant structure (PO:0009011)." [GR:pj, TO:cooperl] synonym: "PHOCN" RELATED [] xref: CHEBI:28659 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000070 ! amount intersection_of: inheres_in CHEBI:28659 ! phosphorus atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp [Term] id: TO:0001025 name: leaf phosphorus content def: "Amount of phosphorus in the leaf." [GR:pj] comment: Often measured in per unit dry weight. synonym: "LFPHOCN" RELATED [] is_a: TO:0001024 ! phosphorus content [Term] id: TO:0001026 name: respiration rate def: "The total amount of carbon lost metabolically by the plant per unit time and is measured by determining the increase in CO2 concentration over a plant leaf in a glass enclosure." [GR:pj] is_a: TO:0000283 ! biological process trait intersection_of: PATO:0000161 ! rate intersection_of: inheres_in GO:0007585 ! respiratory gaseous exchange [Term] id: TO:0001027 name: net photosynthetic rate def: "It is measured as the difference between gross photosynthesis (the total amount of carbon fixed by the plant per unit time) and the respiration (the total amount of carbon lost metabolically during that same time)." [GR:pj] is_a: TO:0000283 ! biological process trait [Term] id: TO:0001028 name: osmotic adjustment break point def: "Break point of leaf water potential in the regression of leaf water potential against leaf relative water content." [CIRAD:Brigitte_Courtois] synonym: "Break point of osmotic adjustment" RELATED [] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0001029 name: relative harvest index def: "It is a ratio of harvest index in stress to that of control environment." [GR:pj] is_a: TO:0000128 ! harvest index [Term] id: TO:0001030 name: relative leaf area def: "It is a ratio of leaf area determined from a stressed plant to that grown in normal environment." [GR:pj] is_a: TO:0000540 ! leaf area trait [Term] id: TO:0001031 name: relative leaf dry weight def: "It is a ratio of leaf dry weight determined from a stressed plant to that grown in normal environment." [GR:pj] is_a: TO:0001014 ! leaf dry weight [Term] id: TO:0001032 name: relative panicle number def: "A panicle number (TO:0000152) trait which is the ratio of panicle number determined from a stressed plant to that grown in normal environment." [GR:pj, TO:moorel] is_a: TO:0000152 ! panicle number [Term] id: TO:0001033 name: relative spikelet number def: "It is a ratio of spikelet number per panicle/inflorescence determined from a stressed plant to that grown in normal environment." [GR:pj] synonym: "relative number of spikelet per panicle" RELATED [] is_a: TO:0000456 ! spikelet number [Term] id: TO:0001034 name: relative plant height def: "It is a ratio of the plant height determined from a stressed plant to that grown in normal environment." [GR:pj] is_a: TO:0000207 ! plant height [Term] id: TO:0001035 name: stem width def: "A stem morphology trait (TO:0000361) which is the width of a stem (PO:0009047)." [GR:cwt, PO:0009047, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "culm diameter" RELATED [] synonym: "culm width" RELATED [] xref: PATO:0000921 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009047 ! stem [Term] id: TO:0001036 name: stem senescence def: "OBSOLETE." [] comment: Please refer to stem senescence (TO:0020085)." [GR:cwt, TO:moorel] synonym: "culm senescence" RELATED [] is_obsolete: true [Term] id: TO:0001041 name: root yield def: "A yield trait (TO:0000371) which is the yield of roots (PO:0009005)." [TO:cooperl] is_a: TO:0000371 ! yield trait created_by: cooperl [Term] id: TO:0001042 name: root quality trait def: "A quality trait (TO:0000597) which is the quality of roots (PO:0009005)." [TO:cooperl] is_a: TO:0000597 ! quality trait created_by: cooperl [Term] id: TO:0002600 name: floral organ size def: "A floral organ morphology trait (TO:0000862) which is the size of a floral organ (PO:0025395)." [GR:pj, PO:0025395, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 is_a: TO:0000862 ! floral organ morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009008 ! plant organ intersection_of: part_of PO:0009046 ! flower [Term] id: TO:0002601 name: stamen size def: "A stamen morphology trait (TO:0000225) which is the size of a stamen (PO:0009029)." [GR:pj, PO:0009029, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. xref: PATO:0000117 is_a: TO:0000215 ! stamen morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009029 ! stamen [Term] id: TO:0002602 name: pistil size def: "A pistil morphology trait (TO:0000223) which is the size of a pistil." [GR:pj, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 is_a: TO:0000223 ! pistil morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009062 ! gynoecium [Term] id: TO:0002603 name: petal size def: "A petal morphology trait (TO:0000863) which is the size of a petal (PO:0009032)." [GR:pj, PO:0009032, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. xref: PATO:0000117 is_a: TO:0000863 ! petal morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009032 ! petal [Term] id: TO:0002604 name: sepal size def: "A sepal morphology trait (TO:0000864) which is the size of a sepal (PO:0009031)." [GR:pj, PO:0009031, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. xref: PATO:0000117 is_a: TO:0000864 ! sepal morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009031 ! sepal [Term] id: TO:0002605 name: petal length def: "A petal morphology trait (TO:0000863) which is the length of a petal (PO:0009032)." [GR:pj, PO:0009032, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0000863 ! petal morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009032 ! petal [Term] id: TO:0002606 name: petal width def: "A petal morphology trait (TO:0000863) which is the width of a petal (PO:0009032) in a flower (PO:0009049)." [GR:pj, PO:0009032, PO:0009049, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. xref: PATO:0000921 is_a: TO:0000863 ! petal morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009032 ! petal [Term] id: TO:0002607 name: sepal length def: "A sepal morphology trait (TO:0000864) which is the length of a sepal (PO:0009031)." [GR:pj, PO:0009031, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0000864 ! sepal morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009031 ! sepal [Term] id: TO:0002608 name: sepal width def: "A sepal morphology trait (TO:0000864) which is the width of a sepal (PO:0009031) in a flower (PO:0009049)." [GR:pj, PO:0009031, PO:0009049, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. xref: PATO:0000921 is_a: TO:0000864 ! sepal morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009031 ! sepal [Term] id: TO:0002609 name: stamen length def: "A stamen morphology trait (TO:0000215) which is the length of a stamen (PO:0009029)." [GR:pj, PO:0009029, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0000215 ! stamen morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009029 ! stamen [Term] id: TO:0002610 name: pistil length def: "A pistil morphology trait (TO:0000223) which is the length of a pistil." [GR:pj, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0000223 ! pistil morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009062 ! gynoecium [Term] id: TO:0002611 name: homeotic development trait def: "A developmental trait resulting development of increased, decreased or new organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals." [GR:pj] synonym: "homeotic mutation" RELATED [] is_a: TO:0000927 ! plant organ growth and development trait [Term] id: TO:0002612 name: vegetative homeotic development trait def: "A developmental trait resulting development of increased, decreased or new vegetative organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of leaves into scales." [GR:pj] is_a: TO:0002611 ! homeotic development trait [Term] id: TO:0002613 name: reproductive homeotic development trait def: "A developmental trait resulting development of increased, decreased or new reproductive organs and organ parts due to a mutation that causes one member of a repetitive series to assume the identity of another member , for example, the transformation of sepals into petals." [GR:pj] is_a: TO:0002611 ! homeotic development trait [Term] id: TO:0002614 name: floral organ length def: "A floral organ morphology trait (TO:0000862) which is the length of a floral organ (PO:0025395)." [GR:pj, PO:0025395, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0000862 ! floral organ morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009008 ! plant organ intersection_of: part_of PO:0009046 ! flower [Term] id: TO:0002615 name: floral organ width def: "A floral organ morphology trait (TO:0000862) which is the width of a floral organ (PO:0025395)." [GR:pj, PO:0025395, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. xref: PATO:0000921 is_a: TO:0000862 ! floral organ morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009008 ! plant organ intersection_of: part_of PO:0009046 ! flower [Term] id: TO:0002616 name: flowering time trait def: "A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616)." [GR:pj, TO:cooperl] comment: Often influenced by the environment that includes, day light, temperature and geographic location. synonym: "anthesis timing" RELATED [] synonym: "time of flowering" RELATED [] xref: TO_GIT:267 is_a: TO:0000933 ! plant phenological trait [Term] id: TO:0002617 name: fruit color def: "A fruit morphology trait (TO:0002617) which is the color of a fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002618 name: endocarp color def: "An endocarp morphology trait (TO:0000946) which is a the color of an endocarp (PO:0009084)." [TO:austin_meier] xref: PATO:0000014 xref: TO_GIT:293 is_a: TO:0000946 ! endocarp morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009086 ! endocarp relationship: part_of TO:0002617 ! fruit color [Term] id: TO:0002619 name: mesocarp color def: "A mesocarp morphology trait (TO:0000948) which is the color of a mesocarp (PO:0009087)." [TO:austin_meier, TO:cooperl] xref: PATO:0000014 xref: TO_GIT:294 is_a: TO:0000948 ! mesocarp morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009087 ! mesocarp relationship: part_of TO:0002617 ! fruit color [Term] id: TO:0002620 name: exocarp color def: "An exocarp morphology trait (TO:0000906) which is the color of an exocarp (PO:0009085)." [TO:austin_meier, TO:cooperl] synonym: "epicarp color" EXACT [] xref: PATO:0000014 xref: TO_GIT:295 is_a: TO:0000906 ! exocarp morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009085 ! exocarp relationship: part_of TO:0002617 ! fruit color [Term] id: TO:0002621 name: fruit columella color def: "A fruit color trait (TO:0002617) which is the color of a fruit columella (PO:0004540)." [PO:0004540, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0002617 ! fruit color intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0004540 ! fruit columella [Term] id: TO:0002622 name: locular tissue trait def: "The traits observed for the locular tissue present around the seeds as found in Solanaceae." [SGN:nm] comment: The values observed in tomato and pepper fruits may be defined differently. is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0002623 name: pericarp texture def: "A pericarp morphology trait (TO:0000945) that is the texture of the pericarp (PO:0009084)." [TO:cooperl] xref: PATO:0000150 xref: TO_GIT:292 is_a: TO:0000945 ! pericarp morphology trait is_a: TO:0002728 ! fruit quality trait intersection_of: PATO:0000150 ! texture intersection_of: inheres_in PO:0009084 ! pericarp [Term] id: TO:0002624 name: exocarp texture def: "An exocarp morphology trait (TO:0000906) that is the texture of the exocarp (PO:0009085)." [TO:austin_meier, TO:cooperl] xref: PATO:0000150 xref: TO_GIT:295 is_a: TO:0000906 ! exocarp morphology trait intersection_of: PATO:0000150 ! texture intersection_of: inheres_in PO:0009085 ! exocarp [Term] id: TO:0002625 name: fruit size def: "A fruit morphology trait (TO:0002629) which is the size of a fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. synonym: "FRSZ" RELATED [] synonym: "kernel size" NARROW [] synonym: "pod size" NARROW [] xref: PATO:0000117 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002626 name: fruit length def: "A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "grain length " NARROW [] synonym: "GRLG" NARROW [] synonym: "pod length" NARROW [] xref: PATO:0000122 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002627 name: fruit width def: "A fruit morphology trait (TO:0002629) which is the width of a fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "FRWD" RELATED [] synonym: "kernel plumpness" RELATED [] synonym: "kernel width" NARROW [] synonym: "percentage of plump kernels" RELATED [] synonym: "plump grain" RELATED [] xref: PATO:0000921 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002628 name: fruit shape def: "A fruit morphology trait (TO:0002629) which is the shape of a fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "pod shape" NARROW [] xref: PATO:0000052 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002629 name: fruit morphology trait def: "A multi-tissue plant structure morphology trait (TO:0000836) which is a quality of a fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] synonym: "accessory fruit morphology trait" NARROW [] synonym: "berry morphology trait " NARROW [] synonym: "capsule morphology trait " NARROW [] synonym: "caryopsis morphology trait" NARROW [] synonym: "citrus fruit morphology trait" NARROW [] synonym: "fruit morphology" RELATED [] synonym: "grain morphology trait" NARROW [] synonym: "kernel morphology trait" NARROW [] synonym: "nut morphology trait" NARROW [] synonym: "pepo morphology trait" NARROW [] synonym: "pod morphology trait" NARROW [] synonym: "silique morphology trait" NARROW [] synonym: "stone fruit morphology trait" NARROW [] is_a: TO:0000836 ! multi-tissue plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002630 name: fruit distal end shape def: "A fruit shape (TO:0002628) which is the shape of a fruit distal end (PO:0008001)." [GR:pj, PO:0008001, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0002628 ! fruit shape intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0008001 ! fruit distal end [Term] id: TO:0002631 name: fruit proximal end shape def: "A fruit shape (TO:0002628) which is the shape of the fruit proximal end (PO:0008002)." [GR:pj, PO:0008002, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0002628 ! fruit shape intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0008002 ! fruit proximal end [Term] id: TO:0002632 name: fruit abscission zone size def: "A fruit morphology trait (TO:0002632) which is the size of the fruit abscission zone (PO:0006503)." [GR:pj, PO:0006503, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. synonym: "size stem scar size" RELATED [] xref: PATO:0000117 is_a: TO:0002629 ! fruit morphology trait is_a: TO:0002729 ! fruit senescing quality trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0006503 ! fruit abscission zone [Term] id: TO:0002633 name: fruit ripening trait def: "A fruit growth and development trait (TO:0000929) that is the extent of fruit ripening (GO:0009835)." [GR:pj, TO:cooperl] comment: Fruit ripening (GO:0009835) is an aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal. synonym: "fruit ripening" RELATED [] xref: GO:0009835 xref: TO_GIT:256 is_a: TO:0000283 ! biological process trait is_a: TO:0000929 ! fruit growth and development trait is_a: TO:0002728 ! fruit quality trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0009835 ! fruit ripening [Term] id: TO:0002634 name: fruit firmness def: "In addition to the fruit color, firmness is the best measurement of ripeness. It is assayed as the force necessary to break the flesh tissues and depends on the different growth stages during the ripening process." [BR:pj] is_a: TO:0002728 ! fruit quality trait intersection_of: PATO:0000037 ! consistency intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002635 name: leaf margin morphology trait def: "A phyllome margin morphology trait (TO:0000834) which is a quality of a leaf margin (PO:0020128)." [GR:pj, PO:0020128] comment: Often associated with leaf margin curvature. synonym: "leaf margin curvature" RELATED [] xref: TO_GIT:142 is_a: TO:0000834 ! phyllome margin morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020128 ! leaf margin created_by: jaiswalp [Term] id: TO:0002636 name: leaflet number def: "An assay to detrmine the variation the number of leaves." [GR:pj] is_a: TO:0000419 ! vascular leaf morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0020049 ! leaflet [Term] id: TO:0002637 name: leaf size def: "A leaf morphology trait (TO:0000748) which is the size of a leaf (PO:0025034)." [GR:pj, PO:0025034, TO:cooperl] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species. xref: PATO:0000117 is_a: TO:0000748 ! leaf morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0025034 ! leaf [Term] id: TO:0002638 name: shoot meristem development def: "An assay to associate observing effects on the development of shoot meristem." [GR:pj] synonym: "shoot meristem abortion" RELATED [] is_a: TO:0000654 ! shoot system growth and development trait is_a: TO:0006016 ! meristem tissue development trait [Term] id: TO:0002639 name: shoot branching is_a: TO:0000361 ! stem morphology trait [Term] id: TO:0002640 name: fruit set trait is_a: TO:0000871 ! fruit yield trait [Term] id: TO:0002641 name: acid detergent fiber def: "The percentage of highly indigestible or slowly digestible fiber in a feed or forage. Acid detergent fiber contains cellulose as well as silica and lignin which are associated with low digestibility." [GR:pj, GrainGenes_trait:Acid_Detergent_Fiber, web:http\://www.foragetesting.org/lab_procedure/sectionB/4/part4.1.htm] comment: The method typically uses acidified quaternary detergent solution to dissolve cell solubles, hemicellulose and soluble minerals leaving a residue of cellulose, lignin, and heat damaged protein and a portion of cell wall protein and minerals (ash). Acid detergent fiber is determined gravimetrically as the residue remaining after extraction. The lower the acid detergent fiber, the more digestible the feed is and the higher the energy value of the feed. synonym: "ACIDDETFIBR" RELATED [] synonym: "ADF" RELATED [] is_a: TO:0002642 ! dietary fiber related trait [Term] id: TO:0002642 name: dietary fiber related trait def: "The traits assayed for content and quality of food/forage based on pre or post digestive processes." [GR:pj] is_a: TO:0000597 ! quality trait [Term] id: TO:0002643 name: carbon isotope discrimination def: "It is a measure of the C isotopic composition in plant material relative to the value of the same ratio in the air of the environment where the plant is grown." [GR:pj, GrainGenes_trait:Carbon_isotope_discrimination, PMID:11756262] synonym: "CBISOTPDISC" RELATED [] is_a: TO:0000465 ! mineral and ion content related trait [Term] id: TO:0002644 name: dry matter digestibility def: "Expressed as a percent, is a measure of the dry matter content of forage or feed that is retained in the animal body." [GR:iyt, GR:pj, GrainGenes_trait:Dry_matter_digestibility] synonym: "DMATTDIGAB" RELATED [] is_a: TO:0000597 ! quality trait [Term] id: TO:0002645 name: malt tenderness def: "Percentage of soft malt, measured from micro malting 50g of barley." [GrainGenes_trait:Malt_tenderness, PMID:12677407] synonym: "MALTTENDER" RELATED [] is_a: TO:0000667 ! cooking or brewing quality is_a: TO:0000685 ! fruit tenderness [Term] id: TO:0002646 name: flour particle size def: "Size of flour particles determined after grinding the grains. The size depends on the length and type of grinding." [GR:pj, GrainGenes_trait:Particle_size] comment: It affects the water absorption, dough handling characteristics and loaf volume while cooking. synonym: "FLRPARTSZ" RELATED [] is_a: TO:0000667 ! cooking or brewing quality [Term] id: TO:0002647 name: starch digestibility def: "Expressed as a percent, is a measure of the starch content of forage or feed that is retained in the animal body." [GR:pj, GrainGenes_trait:Starch_digestibility] synonym: "STARCHDIG" RELATED [] is_a: TO:0000597 ! quality trait [Term] id: TO:0002648 name: water absorption by seed def: "A measure of the relative water absorption after soaking a known amount (weight) of seed." [GR:pj, GrainGenes_trait:Water_absorption] synonym: "WABSORPSD" RELATED [] is_a: TO:0000931 ! seed quality trait [Term] id: TO:0002649 name: pesticide sensitivity def: "A chemical stress sensitivity (TO:0000482) which is the tolerance exhibited by a plant or a group of plants (population) towards the applied pesticide." [POC:Cooperl] is_a: TO:0000482 ! chemical stress sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:25944 ! pesticide intersection_of: occurs_in PO:0000003 ! whole plant [Term] id: TO:0002650 name: phototropism def: "The movement of a plant or plant part in the direction of the light." [GR:pj] is_a: TO:0000075 ! light sensitivity [Term] id: TO:0002651 name: shoot phototropism def: "Movement of the shoot part of a plant in the direction of the light." [GR:pj, PMID:15598797] synonym: "coleoptile curvature" NARROW [] synonym: "coleoptile phototropism" NARROW [] is_a: TO:0002650 ! phototropism [Term] id: TO:0002652 name: root phototropism def: "Movement of the shoot part of a plant in the direction of the light." [GR:pj, PMID:15598797] is_a: TO:0002650 ! phototropism [Term] id: TO:0002653 name: endosperm storage protein content def: "Assay for the amount of seed storage protein present in the endosperm." [GR:pj] is_a: TO:0000490 ! seed protein composition trait is_a: TO:0000598 ! protein content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in GO:0045735 intersection_of: occurs_in PO:0009089 ! endosperm [Term] id: TO:0002654 name: pyruvate orthophosphate dikinase activity trait def: "Catalysis of the reaction: ATP + pyruvate + phosphate = AMP + phosphoenolpyruvate + diphosphate." [EC:2.7.9.1, GO:GO\:0050242, GR:pj] synonym: "PPDK" EXACT [] synonym: "Pyruvate phosphate dikinase" EXACT [] synonym: "Pyruvate, phosphate phosphotransferase" EXACT [] is_a: TO:0000599 ! enzyme activity trait [Term] id: TO:0002655 name: starch grain size def: "Assay to determine the size of the starch grain size." [GR:pj] is_a: TO:0000162 ! grain quality trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in GO:0043036 ! starch grain [Term] id: TO:0002656 name: starch grain shape def: "Assay to determine the shape of the starch grain." [GR:pj] is_a: TO:0000162 ! grain quality trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in GO:0043036 ! starch grain [Term] id: TO:0002657 name: oxidative stress def: "A chemical stress sensitivity (TO:0000482) which is the production of reactive oxygen and the plants ability to readily detoxify the reactive intermediates." [GR:pj, TO:moorel] is_a: TO:0000482 ! chemical stress sensitivity [Term] id: TO:0002658 name: starch grain synthesis def: "An assay to determine if the starch grains are formed in the plant or plant part. Often associated with the starch biosynthesis and branching of the starch." [GR:pj] is_a: TO:0000283 ! biological process trait [Term] id: TO:0002659 name: pistil number def: "A pistil morphology trait (TO:0000223) which is the number of pistils in the gynoecium (PO:0009062)." [GR:pj, PO:0009062, TO:moorel] is_a: TO:0000223 ! pistil morphology trait is_a: TO:0002613 ! reproductive homeotic development trait is_a: TO:0006022 ! floral organ development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009062 ! gynoecium [Term] id: TO:0002660 name: cytokinin content def: "Measures the cytokinin content in a plant or plant part." [GR:pj] is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:23530 ! cytokinin [Term] id: TO:0002661 name: seed maturation def: "This trait can be derived based on the parameters like, degree of grain filling, grain hardness, hull color, grain moisture, etc. It can be determined for (a)synchronously with any of these parameters." [GR:pj] synonym: "asynchronous seed maturation" RELATED [] synonym: "nonsynchronous seed maturation" RELATED [] synonym: "SDMT" RELATED [] synonym: "synchronous seed maturation" RELATED [] is_a: TO:0000653 ! seed growth and development trait [Term] id: TO:0002662 name: leaf rolling tolerance def: "A leaf rolling trait (TO:0000085) which is the tolerance for leaf rolling or wilting observed in response to stresses like drought, water and temperature. It precedes leaf drying stage." [GR:pj, TO:moorel] synonym: "Cold-induced wilting tolerance" BROAD [] synonym: "LFRLTL" EXACT [] synonym: "wilting tolerance" NARROW [] is_a: TO:0000085 ! leaf rolling intersection_of: PATO:0000515 ! tolerant to intersection_of: inheres_in TO:0000085 ! leaf rolling [Term] id: TO:0002663 name: leaf necrosis tolerance def: "Tolerance for leaf necrosis or scorching observed in response to stresses like drought, insecticides and cold temperature as evidenced by less number or chlorotic and/or necrotic tissue." [GR:pj] synonym: "Cold-induced necrosis tolerance" RELATED [] synonym: "LFNECTL" RELATED [] synonym: "necrosis tolerance" RELATED [] is_a: TO:0000652 ! leaf necrosis intersection_of: PATO:0000515 ! tolerant to intersection_of: inheres_in TO:0000652 ! leaf necrosis [Term] id: TO:0002664 name: leaf yellowing tolerance def: "Tolerance for leaf color yellowing observed in response to stresses like drought, water and temperature. It may precedes leaf drying stage." [GR:pj] synonym: "Cold-induced yellowing tolerance" BROAD [] synonym: "LFYTL" RELATED [] is_a: TO:0000326 ! leaf color [Term] id: TO:0002665 name: root hair length def: "Average maximum length of the root hair present in the root of a plant in a study." [GR:pj] synonym: "RTHLG" RELATED [] synonym: "RTHRLG" RELATED [] is_a: TO:0000043 ! root morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0000256 ! root hair cell [Term] id: TO:0002666 name: seed phosphorus content def: "Amount of phosphorus in the seed." [GR:pj] synonym: "SDPHOCN" RELATED [] is_a: TO:0001024 ! phosphorus content [Term] id: TO:0002667 name: abscisic acid content def: "Measures the abscisic acid content in a plant or plant part." [CHEBI:62431] synonym: "ABA content" RELATED [] synonym: "ABACN" RELATED [] xref: CHEBI:62431 is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:62431 ! abscisic acids intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0002668 name: jasmonic acid content def: "Measures the jasmonic acid content in a plant or plant part." [GR:pj, PMID:17031029] synonym: "JA content" RELATED [] synonym: "jasmonate content" RELATED [] is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18292 ! jasmonic acid [Term] id: TO:0002669 name: diterpenoid phytoalexin content def: "Measures the diterpenoid phytoalexin content in a plant or plant part." [GR:pj] comment: Diterpenoid phytoalexins are polycyclic diterpenes involved in pathogen response. is_a: TO:0000290 ! flavonoid content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:60952 [Term] id: TO:0002670 name: momilactone A content def: "Measures the momilactone A content in a plant or plant part." [PMID:16569039] comment: Momilactone A is a instance of diterpenoid phytoalexin. synonym: "phytoalexin momilactone A content" RELATED [] is_a: TO:0002669 ! diterpenoid phytoalexin content intersection_of: PATO:0000070 ! amount intersection_of: inheres_in CHEBI:49191 ! momilactone A [Term] id: TO:0002671 name: momilactone B content def: "Measures the momilactone A content in a plant or plant part." [PMID:16569039] comment: Momilactone B is a instance of diterpenoid phytoalexin. synonym: "phytoalexin momilactone B content" RELATED [] is_a: TO:0002669 ! diterpenoid phytoalexin content [Term] id: TO:0002672 name: auxin content def: "A growth hormone content (TO:0000476) which is the amount of auxin (CHEBI:22676) in a plant structure (PO:0009011)." [GR:pj, PMID:16908506] comment: The most important auxin produced by plants is indole-3-acetic acid (IAA). synonym: "AUXCN" RELATED [] xref: CHEBI:22676 is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:22676 ! auxin intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0002673 name: amino acid content def: "The amino acid content in a plant or plant part." [GR:pj] is_a: TO:0000281 ! metabolite content trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:33709 ! amino acid [Term] id: TO:0002674 name: tryptophan content def: "Amino acid tryptophan content in a plant or plant part." [GR:pj] is_a: TO:0002673 ! amino acid content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27897 ! tryptophan [Term] id: TO:0002675 name: gibberellic acid content def: "Measures the gibberellic acid content in a plant or plant part." [GR:pj] synonym: "GA content" RELATED [] synonym: "GACN" RELATED [] synonym: "gibberellin content" RELATED [] is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28833 [Term] id: TO:0002676 name: brassinosteroid content def: "Measures the brassinosteroid content in a plant or plant part." [GR:pj] comment: Brassinosteroids (BR) are a group of steroidal plant hormones. synonym: "BRCN" RELATED [] is_a: TO:0000476 ! growth hormone content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:22921 ! brassinosteroid [Term] id: TO:0002677 name: brassinosteroid sensitivity def: "Response with respect to application of Brassinosteroid." [GR:pj] comment: Brassinosteroids (BR) are a group of steroidal plant hormones. synonym: "BRSN" RELATED [] is_a: TO:0000401 ! plant growth hormone sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in EO:0007409 ! brassinosteroid treatment [Term] id: TO:0002678 name: panicleless def: "A panicle number (TO:0000152) trait which is the absence of panicle in the plant, either due to the abortion of the developmental process and/or due to environmental factors." [GR:pj, TO:moorel] is_a: TO:0000152 ! panicle number is_a: TO:0002679 ! inflorescenceless [Term] id: TO:0002679 name: inflorescenceless def: "The absence of inflorescence in the plant, either due to the abortion of the inflorescence developmental process and/or due to environmental factors." [GR:pj] is_a: TO:0000582 ! inflorescence number [Term] id: TO:0002680 name: albumin content def: "Assay to determine the amount of albumin protein." [GR:pj] synonym: "albumen content" RELATED [] is_a: TO:0000325 ! soluble protein content [Term] id: TO:0002681 name: leaf curling def: "An assay to measure the extent of curling of the leaf lamina." [GR:pj] comment: This is due to the changes in the leaf developmental process and is different from the leaf rolling (TO:0000085) observed due to the water deficient or dorught linke conditions. synonym: "curled leaf trait" RELATED [] synonym: "frizzled leaf trait" RELATED [] is_a: TO:0000655 ! leaf growth and development trait [Term] id: TO:0002682 name: plant cell shape def: "A plant cell morphology trait (TO:0002683) which is the shape of a plant cell (PO:0009002) type." [GR:pj, PO:0009002, TO:moorel] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0002683 ! plant cell morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009002 ! plant cell [Term] id: TO:0002683 name: plant cell morphology trait def: "A plant structure morphology trait (TO:0000839) which is a quality of a plant cell (PO:0009002)." [GR:pj, PO:0009002, TO:moorel] xref: TO_GIT:307 is_a: TO:0000839 ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009002 ! plant cell [Term] id: TO:0002684 name: plant cell size def: "A plant cell morphology trait (TO:0002683) which is the size of a plant cell (PO:0009002) type." [GR:pj, PO:0009002, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 is_a: TO:0002683 ! plant cell morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009002 ! plant cell [Term] id: TO:0002685 name: crown root number def: "A count of number of crown roots present in the seedling." [GR:pj] is_a: TO:0000084 ! root number intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0000043 ! crown root [Term] id: TO:0002686 name: cell growth and development trait def: "Traits associated with observing effects on the growth and development of the plant cell and its parts." [GR:pj] is_a: TO:0000928 ! plant structure growth and development trait [Term] id: TO:0002687 name: cell elongation trait def: "An assay to determine the variation in the length of the plant cell due to cell growth and elongation." [GR:pj] synonym: "cell length" RELATED [] is_a: TO:0002686 ! cell growth and development trait [Term] id: TO:0002688 name: leaf lamina joint bending def: "A leaf lamina morphology trait (TO:0000829) which is the extent of the bending that occurrs to the leaf lamina (PO:0020039) joint in degrees." [GR:pj, PMID:14615594, PO:0020039, TO:moorel] comment: It may happen due to environmental stress such as upon brassinosteroid treatment. is_a: TO:0000829 ! leaf lamina morphology trait [Term] id: TO:0002689 name: leaf sheath length def: "A leaf sheath morphology trait (TO:0000835) which is the length of the leaf sheath (PO:0020104)." [GR:pj, PO:0020104, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in in centimeters. synonym: "LFSLG" RELATED [] xref: PATO:0000122 is_a: TO:0000835 ! leaf sheath morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020104 ! leaf sheath [Term] id: TO:0002690 name: leaf lamina length def: "A leaf lamina morphology trait (TO:0000829) which is the length of the leaf laimina (PO:0020039)." [GR:pj, PO:0020039, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Usually measured in centimeters. synonym: "leaf blade length" EXACT [] synonym: "LFLLG" RELATED [] xref: PATO:0000122 is_a: TO:0000829 ! leaf lamina morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020039 ! leaf lamina [Term] id: TO:0002691 name: peduncle length def: "A peduncle morphology trait (TO:0000776) which is the length of a peduncle (PO:0009053)." [GR:pj, PO:0009053, POC:cooperl] comment: Peduncle is the stalk of an inflorescence; that part of the inflorescence below the first flower or inflorescence branch and above the last foliage leaf/pair of foliage leaves.\nRefers to the length ((PATO:0000122):A 1-D extent quality which is equal to the distance between two points) of a peduncle (PO:0009053). synonym: "neck internode length" EXACT [PMID:17303594] xref: PATO:0000122 xref: TO_GIT:88 is_a: TO:0000776 ! peduncle morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009053 ! peduncle [Term] id: TO:0002692 name: root meristem development def: "An assay to determine the variation in the root meristem development." [GR:pj, PMID:17303594] comment: The variation may be due to both the genotypic and/or environmental effects. is_a: TO:0000656 ! root development trait is_a: TO:0006016 ! meristem tissue development trait [Term] id: TO:0002693 name: gravity response trait def: "An assay to determine the variation in the gravitropism under the influence of gravity or zero gravity." [GR:pj] is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0002694 name: fruit flavor trait def: "An assay to determine the sensory impression of a fruit by the chemical senses of taste and smell." [GR:pj] synonym: "pod flavor trait" NARROW [] xref: TO_GIT:117 is_a: TO:0002728 ! fruit quality trait intersection_of: PATO:0000043 ! flavor intersection_of: inheres_in PO:0009011 ! plant structure [Term] id: TO:0002695 name: beta-carotene content def: "The beta-carotene content in a plant or plant part." [GR:pj] comment: The most common form of carotenoid is beta-carotene. synonym: "beta-carotenoid content" EXACT [] is_a: TO:0002697 ! cyclic carotene content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17579 ! beta-carotene [Term] id: TO:0002696 name: alpha carotene content def: "The alpha-carotene content in a plant or plant part." [GR:pj] comment: The alpha-carotene is the second most common form of carotenoid. synonym: "alpha-carotenoid content" EXACT [] is_a: TO:0002697 ! cyclic carotene content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28425 [Term] id: TO:0002697 name: cyclic carotene content def: "The cyclic carotene content in a plant or plant part." [GR:pj] is_a: TO:0000289 ! carotene content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:35163 ! cyclic carotene [Term] id: TO:0002698 name: acyclic carotene content def: "The acyclic carotene content in a plant or plant part." [GR:pj] is_a: TO:0000289 ! carotene content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:35162 ! acyclic carotene [Term] id: TO:0002699 name: lycopene content def: "The lycopene content in a plant or plant part." [GR:pj] comment: Lycopene is the most efficient quencher of singlet oxygen free radicals. is_a: TO:0002698 ! acyclic carotene content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:15948 ! lycopene [Term] id: TO:0002700 name: pungency def: "The quality of producing a sharp sensation of taste or smell." [GR:pj] is_a: TO:0002694 ! fruit flavor trait [Term] id: TO:0002701 name: lutein content def: "The leutein content in a plant or plant part." [GR:pj] is_a: TO:0000301 ! xanthophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28838 ! lutein [Term] id: TO:0002702 name: cercospora leaf spot resistance def: "Causal agent: Cercospora spp." [GR:pj] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0002703 name: protist disease resistance def: "The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj] is_a: TO:0000112 ! disease resistance is_a: TO:0000242 ! microbial damage resistance [Term] id: TO:0002704 name: Meloidogyne incognita resistance def: "Causal agent: Meloidogyne incognita. Symptom: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots." [GR:pj] is_a: TO:0000384 ! nematode damage resistance intersection_of: PATO:0001046 ! resistance to intersection_of: inheres_in EO:0007372 ! Meloidogyne incognita [Term] id: TO:0002705 name: cucurbit downy mildew resistance def: "Causal agent: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits." [GR:pj] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0002706 name: Meloidogyne javanica resistance def: "Causal agent: Meloidogyne javanica. Symptom: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots." [GR:pj] is_a: TO:0000384 ! nematode damage resistance intersection_of: PATO:0001046 ! resistance to intersection_of: inheres_in EO:0007371 ! Meloidogyne javanica [Term] id: TO:0002707 name: petiole color def: "A petiole morphology trait (TO:0000765) which is the color of the petiole (PO:0020038)." [GR:pj, PO:0020038, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. xref: PATO:0000014 is_a: TO:0000765 ! petiole morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020038 ! petiole [Term] id: TO:0002708 name: xylem color def: "The color of the xylem tissue." [GR:pj] is_a: TO:0000470 ! vascular tissue morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0005352 ! xylem [Term] id: TO:0002709 name: phloem color def: "The color of the phloem tissue." [GR:pj] is_a: TO:0000470 ! vascular tissue morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0005417 ! phloem [Term] id: TO:0002710 name: root shape def: "The shape of the plant root system." [GR:pj] is_a: TO:0000043 ! root morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009005 ! root [Term] id: TO:0002712 name: stay green trait def: "A whole plant growth and development trait (TO:0000947) which is the color of plant and the photosynthetic organs remain green compared to turning yellow and or brown at the time of senescing." [GR:pj] is_a: TO:0000947 ! whole plant growth and development trait relationship: part_of TO:0000326 ! leaf color [Term] id: TO:0002713 name: cell organelle morphology trait def: "A plant cell morphology trait (TO:0002683) which is a quality of a cell organelle." [GR:pj, TO:moorel] synonym: "cell organelle development trait" RELATED [] synonym: "organelle biogenesis trait" NARROW [] synonym: "organelle structure trait" NARROW [] is_a: TO:0002683 ! plant cell morphology trait [Term] id: TO:0002714 name: plastid development trait def: "A cell organelle morphology trait (TO:0002713) which is a quality of a plastid development." [GR:pj, TO:cooperl] synonym: "plastid biogenesis trait" NARROW [] synonym: "plastid structure trait" NARROW [] is_a: TO:0002713 ! cell organelle morphology trait is_a: TO:0002755 ! cell organelle development trait [Term] id: TO:0002715 name: chloroplast development trait def: "Trait(s) associated with phenotypes observed for abnormal development of chloroplast structure and biogenesis." [GR:pj] synonym: "chloroplast biogenesis trait" NARROW [] synonym: "chloroplast structure trait" NARROW [] is_a: TO:0002714 ! plastid development trait [Term] id: TO:0002716 name: leaf sheath auricle pubescence def: "A leaf sheath morphology trait (TO: 0002717) which is the extent of pubescence (presence of hairs) on the leaf sheath auricle (PO:0020106)." [GR:pj, PO:0020106] synonym: "AUPUBES" RELATED [] is_a: TO:0002717 ! leaf sheath auricle morphology trait [Term] id: TO:0002717 name: leaf sheath auricle morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf sheath auricle (PO:0020106)." [GR:pj, PO:0020106, POC:cooperl] xref: TO_GIT:143 is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020106 ! leaf sheath auricle [Term] id: TO:0002718 name: awn morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which a quality of a awn (PO:0025349)." [GR:pj, PO:0025349, TO:moorel] is_a: TO:0000754 ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025349 ! awn [Term] id: TO:0002719 name: awn thickness def: "An awn morphology trait (TO:0002718) which is the thickness of the awn (PO:0025349) measured at a given distance from the apiculus." [GR:pj, PO:0025349, TO:moorel] comment: Refer to thickness (PATO:0000915): A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width. synonym: "AWNTH" RELATED [] xref: PATO:0000915 is_a: TO:0002718 ! awn morphology trait intersection_of: PATO:0000915 ! thickness intersection_of: inheres_in PO:0025349 ! awn [Term] id: TO:0002720 name: leaf lamina width def: "A leaf lamina morphology trait (TO:0000829) which is the width of the leaf lamina (PO:0020039)." [GR:pj, PO:0020039, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. in centimeters synonym: "leaf blade width" RELATED [] synonym: "LFLWD" EXACT [] xref: PATO:0000921 is_a: TO:0000829 ! leaf lamina morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0020039 ! leaf lamina [Term] id: TO:0002721 name: leaf sheath width def: "A leaf sheath morphology trait (TO:0000835) which is the width of the leaf sheath (PO:0020104)." [GR:pj, PO:0020104, TO:cooperl, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. xref: PATO:0000921 is_a: TO:0000835 ! leaf sheath morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0020104 ! leaf sheath [Term] id: TO:0002722 name: leaf pubescence def: "A leaf morphology trait (TO:0000748) which is the extent of pubescence (presence of hairs) on the leaf (PO:0025034)." [GR:pj, PO:0025034] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. xref: PATO:0001320 is_a: TO:0000748 ! leaf morphology trait created_by: jaiswalp [Term] id: TO:0002723 name: leaf lamina margin pubescence def: "A leaf lamina margin morphology trait (TO:0000830) which is the extent of pubescence (presence of hairs) on a leaf lamina margin (PO:0025009)." [GR:pj] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. synonym: "leaf blade margin pubescence" RELATED [] synonym: "LFLMPUBES" RELATED [] xref: PATO:0001320 is_a: TO:0000830 ! leaf lamina margin morphology trait [Term] id: TO:0002724 name: leaf sheath color def: "A leaf sheath morphology trait (TO:0000835) which is the color of the leaf sheath (PO:0020104)." [GR:pj, PO:0020104, TO:moorel] comment: Refer to color (PATO:0000014): A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "LFSCL" RELATED [] xref: PATO:0000014 is_a: TO:0000835 ! leaf sheath morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020104 ! leaf sheath [Term] id: TO:0002725 name: life cycle habit def: "Determined for type of life cycle being annual, biannual, perennial etc." [GR:pj] synonym: "LIFECYCHAB" RELATED [] is_a: TO:0000933 ! plant phenological trait [Term] id: TO:0002726 name: sterile lemma shape def: "A lemma and palea morphology trait (TO:0000079) which is the shape of the sterile lemma (PO:0009040)." [GR:pj, PO:0009040, TO:moorel] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "STLEMSHP" RELATED [] xref: PATO:0000052 is_a: TO:1000023 ! lemma morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009040 ! sterile lemma [Term] id: TO:0002727 name: sterile lemma width def: "A lemma morphology trait (TO:0000079) which is the width of the sterile lemma (PO:0009040). Measured in the widest portion of the sterile lemma." [GR:pj, PO:0009040, TO:moorel] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "STLEMWD" RELATED [] xref: PATO:0000921 is_a: PATO:0000921 {is_inferred="true"} ! width is_a: TO:1000023 {is_inferred="true"} ! lemma morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009040 ! sterile lemma relationship: inheres_in PO:0009040 {is_inferred="true"} ! sterile lemma [Term] id: TO:0002728 name: fruit quality trait def: "A quality trait (TO:0000597) which is the commercial and /or economical value of a fruit (PO:0009001) , or its overall improvement." [GR:pj, TO:cooperl] xref: TO_GIT:263 is_a: TO:0000597 ! quality trait intersection_of: TO:0000597 ! quality trait intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002729 name: fruit senescing quality trait def: "Traits associated with the fruit abscission zone." [GR:pj] is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0002730 name: grain shape def: "A fruit shape (TO:0002628) which is the shape of the dehulled grain." [GR:pj, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). synonym: "dehulled-grain shape" RELATED [] synonym: "DHULGRSHP" RELATED [] synonym: "GRSHP" RELATED [] xref: PATO:0000052 is_a: TO:0002628 ! fruit shape [Term] id: TO:0002731 name: grain length to width ratio def: "A grain size (TO:0000397) which is the grain length and grain width on dehulled grain." [GR:pj, TO:moorel] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. Size categories ranging from small to medium to large. synonym: "dehulled-grain length to width ratio" RELATED [] synonym: "DHULGRLGWDRO" RELATED [] synonym: "GRLHWDRO" RELATED [] xref: PATO:0000117 xref: PATO:0000122 xref: PATO:0000921 is_a: TO:0000397 ! grain size [Term] id: TO:0002732 name: flag leaf angle: early stage def: "In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed around anthesis stage." [GR:pj] synonym: "flag leaf attitude: early stage" RELATED [] synonym: "FLFAGERLY" RELATED [] is_a: TO:0000124 ! flag leaf angle [Term] id: TO:0002733 name: flag leaf angle: late stage def: "In grasses the flag leaf angle is measured near the collar as the angle of attachment between the flag leaf blade and the main inflorescence axis in grass plants. Observed at maturity stage." [GR:pj] synonym: "flag leaf attitude: late stage" RELATED [] synonym: "FLFAGLATE" RELATED [] is_a: TO:0000124 ! flag leaf angle [Term] id: TO:0002734 name: awn presence def: "An awn morphology trait (TO:0002718) which is the presence or absence of an awn (PO:0025349). Observation may include relative awn size." [GR:pj, PO:0025349, TO:moorel] comment: Refer to presence value PATO:0000458. synonym: "AWNPLU" RELATED [] xref: PATO:0000458 is_a: TO:0002718 ! awn morphology trait intersection_of: PATO:0000070 ! amount intersection_of: inheres_in PO:0025349 ! awn [Term] id: TO:0002735 name: straighthead def: "Malformed inflorescence (panicle in rice), by staying upright/straight at the time of maturity and may carry infertile seeds." [GR:pj, web:http\://plantpathology.tamu.edu/Texlab/Grains/Rice/rices.html] comment: For rice: Straighthead is a physiological disorder that causes the entire head to be blank and remain upright at maturity in rice. Straighthead generally occurs in spots scattered throughout a field and is most easily recognized near harvest when normal plants have downturned heads (from the weight of the grain in the panicle). The disease is frequently found on sandy loam soils but seldom on clay soils. Old cotton fields with arsenic residues can have a severe incidence of straighthead. Other, as yet unknown, soil factors are also involved in causing straighthead. Often it is found in fields where excessive non-decayed vegetation has been plowed under just before planting. The disease is characterized by upright heads when the rice matures due to infertile seed. Hulls may be distorted into a crescent shape or "parrot beak". One or both hulls may be missing. Affected plants continue to grow, are a darker green, and often produce shoots from a lower portion of the plant. First year crops of rice grown on "new ground" are more likely to be affected. Some varieties are more tolerant than others. Control measures include planting resistant varieties and draining fields with a history of the disorder just prior to internode elongation. is_a: TO:0000168 ! abiotic stress trait [Term] id: TO:0002736 name: flower number trait def: "A flower morphology trait (TO:0000499) which is the number of flowers (PO:0009046)." [GR:pj, PO:0009046, TO:moorel] xref: PATO:0001555 is_a: TO:0000786 ! reproductive shoot system morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009046 ! flower [Term] id: TO:0002737 name: floret number per branch def: "Average number of flowers (florets) per branch in a grass inflorescence." [GR:pj] synonym: "FLNBPBR" RELATED [] is_a: TO:0000670 ! floret number [Term] id: TO:0002738 name: floret number per inflorescence def: "Average number of flowers (florets) in a grass inflorescence." [GR:pj] synonym: "FLNBPINFLO" RELATED [] synonym: "FLNBPPN" RELATED [] synonym: "floret number per panicle" RELATED [] synonym: "florets per inflorescence" RELATED [] synonym: "florets per panicle" EXACT [] is_a: TO:0000670 ! floret number intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009082 ! spikelet floret intersection_of: occurs_in PO:0009049 ! inflorescence [Term] id: TO:0002739 name: fruit surface area def: "Average whole fruit surface area." [GR:pj] synonym: "FRUTSURFAR" RELATED [] is_a: TO:0002728 ! fruit quality trait [Term] id: TO:0002741 name: grain surface area alt_id: TO:0002740 def: "The average surface area of the grain without hull (dehulled) in a grass fruit caryopsis." [GR:pj] synonym: "dehulled-grain surface area" RELATED [] synonym: "DHULGRSURFAR" RELATED [] synonym: "GRSURFAR" RELATED [] synonym: "hulled-grain surface area" RELATED [] synonym: "kernel surface area" RELATED [] is_a: TO:0002728 ! fruit quality trait is_a: TO:0002739 ! fruit surface area [Term] id: TO:0002742 name: fruit volume def: "A fruit morphology trait (TO:0002629) which is the volume of the fruit (PO:0002629)." [GR:pj, PO:0002629] comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. xref: PATO:0000918 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000918 ! volume intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002743 name: grain volume def: "A fruit volume (TO:0002742) of a grain without hull (dehulled)." [GR:pj, TO:moorel] comment: Refer to volume (PATO:0000918): A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies. synonym: "dehulled-grain volume" EXACT [] synonym: "DHULGRVOL" RELATED [] synonym: "GRVOL" RELATED [] xref: PATO:0000918 is_a: TO:0002742 ! fruit volume [Term] id: TO:0002744 name: fruit curved length def: "A fruit length (TO:0002626) which is the average length of the curved surface of fruit (PO:0009001)." [GR:pj, PO:0009001, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0002626 ! fruit length [Term] id: TO:0002745 name: grain curved length def: "A grain length (TO:0000734) which is the curved surface of grain without hull (dehulled)." [GR:pj, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "curved length of dehulled-grain" EXACT [] synonym: "dehulled-grain curved length" EXACT [] synonym: "DHULGRCURVLG" RELATED [] xref: PATO:0000122 is_a: TO:0000734 ! grain length [Term] id: TO:0002746 name: fruit weight def: "A fruit morphology trait (TO:0002629) that is the weight of a fruit (PO:0009001)." [GR:pj, TO:Cooperl] comment: Fruit weight is the weight of one or more fruits at a specified level of maturity and, for grain, moisture level. In maize it is often reported as 100 or 1000 kernel weight, in grams and at 15% moisture content. xref: TO_GIT:242 is_a: TO:0002629 ! fruit morphology trait intersection_of: PATO:0000128 ! weight intersection_of: inheres_in PO:0009001 ! fruit [Term] id: TO:0002747 name: 10-dehulled grain weight def: "Weight of 10-dehulled grain having pericarp (seed coat)." [GR:pj] synonym: "10-grain weight" RELATED [] synonym: "ten dehulled-grain weight" RELATED [] synonym: "ten grain weight" RELATED [] synonym: "TENDHULGRWT" EXACT [] synonym: "TENGRWT" RELATED [] is_a: TO:0000590 ! dehulled grain weight [Term] id: TO:0002748 name: ligule morphology trait def: "A vascular leaf morphology trait (TO:0000419) which is a quality of a ligule (PO:0020105)." [GR:pj, PO:0020105, POC:cooperl] is_a: TO:0000419 ! vascular leaf morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0020105 ! ligule [Term] id: TO:0002749 name: ligule pubescence def: "A ligule morphology trait (TO:0002748) which is the extent of pubescence (presence of hairs) on the ligule (PO:0020105)." [GR:pj, PO:0020105, POC:cooperl] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. synonym: "LIGPUBES" RELATED [] xref: PATO:0001320 is_a: TO:0002748 ! ligule morphology trait [Term] id: TO:0002750 name: ligule margin pubescence def: "A ligule morphology trait (TO:0002748) which isthe extent of pubescence (presence of hairs) on the margin of a ligule (PO:0020105)." [GR:pj, PO:0020105, POC:cooperl] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. synonym: "LIGMPUBES" RELATED [] synonym: "ligule margin hairiness" EXACT [] xref: PATO:0001320 is_a: TO:0002748 ! ligule morphology trait [Term] id: TO:0002751 name: inflorescence branch arrangement alt_id: TO:0002752 def: "An inflorescence morphology trait (TO:0000373) which is the arrangement of inflorescence branches (PO:0009081)." [GR:pj, PO:0009081, TO:moorel] synonym: "INFLBRARANGE" RELATED [] synonym: "panicle branch arrangement" RELATED [] is_a: TO:0000050 ! inflorescence branching [Term] id: TO:0002753 name: arrangement of inflorescence primary branch def: "An inflorescence branch arrangement (TO:0002751) trait which is the arrangement of primary branches in an inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] synonym: "arrangement of primary branch" RELATED [] synonym: "PBRARANGE" RELATED [] synonym: "primary branch arrangement" RELATED [] is_a: TO:0002751 ! inflorescence branch arrangement [Term] id: TO:0002754 name: inflorescence axis texture def: "An inflorescence morphology trait (TO:0000782) which is the texture of the inflorescence axis (PO:0020122)." [GR:pj, PO:0020122, POC:cooperl] comment: Refers to the texture ((PATO:0000150): A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics) of an inflorescence axis (PO:0020122). synonym: "INFLOAXISTEX" RELATED [] synonym: "panicle axis texture" EXACT [] synonym: "PNAXISTEX" RELATED [] xref: PATO:0000150 is_a: TO:0000782 ! inflorescence axis morphology trait intersection_of: PATO:0000150 ! texture intersection_of: inheres_in PO:0020122 ! inflorescence axis [Term] id: TO:0002755 name: cell organelle development trait def: "Trait(s) associated with phenotypes observed for abnormal development of cell organelle structure and its biogenesis." [GR:pj] is_a: TO:0002686 ! cell growth and development trait [Term] id: TO:0002756 name: shoot habit def: "Estimated by the angle of inclination of the main shoot/stem against the soil/growth medium surface." [GR:pj] synonym: "culm habit" RELATED [] synonym: "CULMHAB" RELATED [] synonym: "growth habit" RELATED [] synonym: "stem habit" RELATED [] synonym: "STEMHAB" RELATED [] is_a: TO:0000739 ! shoot axis morphology trait [Term] id: TO:0002757 name: flag leaf length def: "A flag leaf morphology trait (TO:0000832) which is the length of the flag leaf (PO:0020103)." [GR:pj, PO:0020103, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "FLFLG" EXACT [] xref: PATO:0000122 is_a: TO:0000832 ! flag leaf morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020103 ! flag leaf [Term] id: TO:0002758 name: flag leaf lamina width def: "Actual measurements, in centimeters of the widest portion of the flag leaf lamina." [GR:pj] synonym: "flag leaf blade width" EXACT [] synonym: "FLFLWD" EXACT [] is_a: TO:0002720 ! leaf lamina width [Term] id: TO:0002759 name: grain number def: "A grain yield trait (TO:0000396) which is the number of grains dehulled/with hull in a given inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] comment: Refer to has number of (PATO:0001555): The number of parts of a particular type that the bearer entity has. This is a relational quality, and thus holds between two entities: the bearer of the quality, and the type of parts. synonym: "GRNB" RELATED [] synonym: "kernel number" RELATED [] xref: PATO:0001555 is_a: TO:0000396 ! grain yield trait [Term] id: TO:0002761 name: length of grain with hull def: "A grain length (TO:0000734) with hull." [GR:pj] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "HULGRLG" RELATED [] synonym: "hulled grain length" RELATED [] synonym: "hulled-grain length" RELATED [] is_a: TO:0000734 ! grain length [Term] id: TO:0002762 name: width of grain with hull def: "A grain width (TO:0000975) with caryopsis hull (PO:0006000)." [GR:pj, TO:moorel] comment: Refer to width PATO:0000921: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "HULGRWD" RELATED [] synonym: "hulled grain curved width" RELATED [] synonym: "hulled grain width" RELATED [] xref: PATO:0000921 is_a: TO:0000975 ! grain width [Term] id: TO:0002763 name: curved length of grain with hull def: "Average length of the curved surface of grain with hull (hulled)." [GR:pj] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "HULGRCURVLG" RELATED [] synonym: "hulled grain curved length" RELATED [] xref: PATO:0000122 is_a: TO:0002761 ! length of grain with hull [Term] id: TO:0002764 name: surface area of grain with hull def: "The average surface area of the grain with hull (hulled) in a grass fruit caryopsis." [GR:pj] synonym: "HULGRSURFAR" RELATED [] synonym: "hulled-grain surface area" RELATED [] is_a: TO:0002739 ! fruit surface area [Term] id: TO:0002765 name: volume of grain with hull def: "Volume of the grain with hull (hulled)." [GR:pj] synonym: "HULGRVOL" RELATED [] synonym: "hulled grain volume" RELATED [] is_a: TO:0002742 ! fruit volume [Term] id: TO:0002766 name: ligule margin shape def: "A ligule morphology trait (TO:0002748) which is a shape of a margin of a ligule (PO:0020105)." [GR:pj, PO:0020105, POC:cooperl] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's\nratios of distances between its features (points, edges, surfaces and\nalso holes etc). synonym: "LIGMSHP" RELATED [] xref: PATO:0000052 is_a: TO:0002748 ! ligule morphology trait [Term] id: TO:0002767 name: rhizome formation synonym: "RHZFORM" RELATED [] is_a: TO:0000549 ! rhizome morphology trait [Term] id: TO:0002768 name: spikelet length def: "A spikelet morphology trait (TO:0000657) which is the length of a spikelet (PO:0009051)." [GR:pj, PO:0009051, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. synonym: "SPKLG" RELATED [] xref: PATO:0000122 is_a: TO:0000657 ! spikelet morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009051 ! spikelet [Term] id: TO:0005001 name: linoleic acid content def: "The linoleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed." [GR:pj] comment: According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for linoleic acid content are 48% - 59%. synonym: "(9Z,12Z)-Octadecadienoic acid content" EXACT [] synonym: "(Z,Z)-9,12-octadecadienoic acid content" EXACT [] synonym: "9-cis,12-cis-Octadecadienoic acid content" EXACT [] synonym: "9Z,12Z-octadecadienoic acid content" EXACT [] synonym: "cis,cis-linoleic acid content" EXACT [] synonym: "high linoleic oil content" NARROW [] synonym: "linoleic oil content" EXACT [] synonym: "low linoleic oil content" NARROW [] xref: CAS:60-33-3 xref: CHEBI:17351 is_a: TO:0000604 ! fat and essential oil content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17351 ! linoleic acid [Term] id: TO:0005002 name: oleic acid content def: "The oleic acid content in the essential oils present in or extracted from a plant or the plant part such as seed." [GR:pj] comment: According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, for soybean oil the normal values for oleic acid content are 17% - 30%. synonym: "(9Z)-octadec-9-enoic acid content" EXACT [] synonym: "(9Z)-Octadecenoic acid content" EXACT [] synonym: "(Z)-Octadec-9-enoic acid content" EXACT [] synonym: "cis-9-octadecenoic acid content" EXACT [] synonym: "high oleic oil content" NARROW [] synonym: "mid oleic oil content" NARROW [] synonym: "oleic oil content" RELATED [] xref: CAS:112-80-1 xref: CHEBI:16196 is_a: TO:0000604 ! fat and essential oil content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:16196 ! oleic acid [Term] id: TO:0005003 name: stearic acid content def: "The stearic acid content in the essential oils present in or extracted from a plant or the plant part such as seed." [GR:pj] comment: According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. e.g. for soybean oil the normal values for stearic acid content are 2% - 5.4%. synonym: "high stearic oil content" NARROW [] synonym: "low stearic oil content" NARROW [] synonym: "n-octadecanoic acid content" EXACT [] synonym: "octadecanoic acid content" EXACT [] synonym: "octadecoic acid content" EXACT [] synonym: "stearic oil content" RELATED [] xref: CAS:57-11-4 xref: CHEBI:28842 is_a: TO:0000604 ! fat and essential oil content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28842 ! stearic acid [Term] id: TO:0005004 name: omega-3 fatty acid content def: "The omega-3 fatty acid content in the essential oils present in or extracted from a plant or the plant part such as seed." [GR:pj] comment: Omega-3 fatty acid (CHEBI:25681) is a polyunsaturated fatty acid (CHEBI:26208) . There are four subtypes of omega-3 fatty acids, namely, alpha-licanic acid (CHEBI:28771), all-cis-docosa-4,7,10,13,16,19-hexaenoic acid (CHEBI:28125), all-cis-icosa-5,8,11,14,17-pentaenoic acid and alpha-linolenic acid (CHEBI:27432). xref: CHEBI:25681 is_a: TO:0000604 ! fat and essential oil content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:25681 ! omega-3 fatty acid [Term] id: TO:0005005 name: alpha-linolenic acid content def: "The alpha-linolenic acid content in the essential oils present in or extracted from a plant or the plant part such as seed." [GR:pj] comment: According to the Codex Alimentarium, the FAO international standards for food product specifications, the normal values may differ depending on the source plant. For example, in soybean oil the normal values for alpha-linolenic acid content are 4.5% - 11%. synonym: "(9,12,15)-linolenic acid content" EXACT [] synonym: "(9Z,12Z,15Z)-Octadecatrienoic acid content" EXACT [] synonym: "(Z,Z,Z)-9,12,15-octadecatrienoic acid content" EXACT [] synonym: "9,12,15-Octadecatrienoic acid content" EXACT [] synonym: "9-cis,12-cis,15-cis-octadecatrienoic acid content" EXACT [] synonym: "all-cis-9,12,15-octadecatrienoic acid content" EXACT [] synonym: "cis,cis,cis-9,12,15-octadecatrienoic acid content" EXACT [] xref: CAS:463-40-1 xref: CHEBI:27432 is_a: TO:0005004 ! omega-3 fatty acid content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27432 ! alpha-linolenic acid [Term] id: TO:0005006 name: glyphosate sensitivity def: "An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glyphosate." [GR:pj] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. synonym: "glyphosate susceptibility" NARROW [] synonym: "glyphosate tolerance" NARROW [] is_a: TO:0000058 ! herbicide sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:27744 ! glyphosate [Term] id: TO:0005007 name: glufosinate sensitivity def: "An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide glufosinate." [GR:pj] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. synonym: "glufosinate susceptibility" NARROW [] synonym: "glufosinate tolerance" NARROW [] is_a: TO:0000058 ! herbicide sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:52136 ! phosphinothricin [Term] id: TO:0005008 name: acetolactate synthase inhibitor sensitivity def: "An assay to determine the sensitivity (tolerance or susceptibility) exhibited by a plant or a group of plants (population) towards the applied herbicide class of acetolactate synthase inhibitor." [GR:pj] comment: It is expected that the herbicide application must not affect the agronomic yield, if any. synonym: "acetolactate synthase inhibitor susceptibility" NARROW [] synonym: "acetolactate synthase inhibitor tolerance" NARROW [] synonym: "ALS inhibitor susceptibility" NARROW [] synonym: "ALS inhibitor tolerance" NARROW [] is_a: TO:0000058 ! herbicide sensitivity [Term] id: TO:0005009 name: European corn borer resistance def: "Causal agent: Ostrinia nubialis." [GR:pj] synonym: "ECB resistance" EXACT [] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0005010 name: rootworm resistance def: "Causal agent: Diabrotica spp." [GR:pj] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0006001 name: salt tolerance def: "Tolerance to the high salt content in the growth medium." [GR:pj] synonym: "SALTTL" EXACT [] is_a: TO:0000429 ! salt sensitivity intersection_of: PATO:0000515 ! tolerant to intersection_of: inheres_in CHEBI:24866 ! salt [Term] id: TO:0006002 name: proline content def: "Amino acid proline content in a plant or plant part." [GR:pj] is_a: TO:0002673 ! amino acid content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:26271 ! proline [Term] id: TO:0006003 name: oligosaccharide content def: "Amount of oligosaccharides present in the plant or its parts." [GR:pj] comment: Oligosaccharide is a carbohydrate polymer that on hydrolysis yields a small number of monosaccharide molecules. is_a: TO:0000291 ! carbohydrate content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:50699 ! oligosaccharide [Term] id: TO:0006004 name: raffinose content def: "Amount of raffinose present in the plant or plant part." [GR:pj] is_a: TO:0006003 ! oligosaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:16634 ! raffinose [Term] id: TO:0006005 name: fructose content def: "Amount of fructose present in the plant or plant part." [GR:pj] is_a: TO:0006003 ! oligosaccharide content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28757 ! fructose [Term] id: TO:0006006 name: monosaccharide content def: "Amount of monosaccharide present in the plant or plant part." [GR:pj] is_a: TO:0000291 ! carbohydrate content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:35381 ! monosaccharide [Term] id: TO:0006007 name: polysaccharide content def: "Amount of polysaccharide present in the plant or plant part." [GR:pj] is_a: TO:0000291 ! carbohydrate content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18154 ! polysaccharide [Term] id: TO:0006008 name: carbohydrate derivative content def: "A carbohydrate content (TO:0000291) which is the amount of carbohydrate derivatives (CHEBI:63299) in a plant structure (PO:0009011)." [] xref: CHEBI:63299 is_a: TO:0000291 ! carbohydrate content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:63299 ! carbohydrate derivative intersection_of: occurs_in PO:0009011 ! plant structure [Term] id: TO:0006009 name: lodicule morphology trait def: "A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts." [GR:pj, PO:0009036, TO:moorel] xref: TO_GIT:105 is_a: TO:0000736 ! plant organ morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009036 ! lodicule [Term] id: TO:0006010 name: lodicule number def: "A lodicule morphology trait (TO:0006009) which is the average number of lodicules (PO:0009036) per grass flower (floret) in a study." [GR:pj, PO:0009036, TO:moorel] is_a: TO:0002613 ! reproductive homeotic development trait is_a: TO:0006009 ! lodicule morphology trait is_a: TO:0006023 ! lodicule development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009036 ! lodicule [Term] id: TO:0006011 name: lodicule shape def: "A lodicule morphology trait (TO:0006009) which is the shape of a lodicule (PO:0009036)." [GR:pj, PO:0009036, TO:moorel] comment: Refer to shape PATO:0000052: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0006009 ! lodicule morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009036 ! lodicule [Term] id: TO:0006012 name: carpel morphology trait def: "A megasporophyll morphology trait (TO:0000867) which is a quality of a carpel (PO:0009030)." [GR:pj, PO:0009030, TO:moorel] is_a: TO:0000867 ! megasporophyll morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009030 ! carpel [Term] id: TO:0006013 name: carpel number def: "A carpel morphology trait (TO:0006012) which is the number of carpels (PO:0009030) in the gynoecium (PO:0009062)." [GR:pj, PO:0009030, PO:0009062, TO:moorel] is_a: TO:0006012 ! carpel morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009030 ! carpel [Term] id: TO:0006014 name: phyllotaxy def: "A leaf morphology trait (TO:0000748) which is the arrangement of the leaves on the shoot of a plant." [GR:pj, POC:cooperl] synonym: "leaf arrangement" EXACT [] is_a: TO:0000748 ! leaf morphology trait [Term] id: TO:0006015 name: plant tissue development trait def: "Traits associated with observing effects on the development of a given tissue type." [GR:pj] is_a: TO:0000928 ! plant structure growth and development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in PO:0025423 ! plant tissue development stage [Term] id: TO:0006016 name: meristem tissue development trait def: "An assay to determine the variation in the meristematic tissue development." [GR:pj] is_a: TO:0006015 ! plant tissue development trait [Term] id: TO:0006017 name: meristem identity def: "Trait to determine the variation or effect on the establishment of meristem identity or determinacy." [GR:pj] synonym: "meristem determinacy" EXACT [] is_a: TO:0006016 ! meristem tissue development trait [Term] id: TO:0006018 name: organ identity def: "Trait associated with observing effects on the establishment of organ identity." [GR:pj] comment: Identity is considered to be the aggregate of characteristics by which a structure is recognized. is_a: TO:0000927 ! plant organ growth and development trait [Term] id: TO:0006019 name: floral organ identity def: "Trait associated with observing effects on the establishment of floral organ identity." [GR:pj] is_a: TO:0006018 ! organ identity [Term] id: TO:0006020 name: shoot apical meristem development def: "An assay to associate observing effects on the development of shoot apical (SAM) meristem." [GR:pj] is_a: TO:0002638 ! shoot meristem development [Term] id: TO:0006021 name: vegetative to reproductive phase transition trait def: "Trait associated with the transition of vegetative growth phase to the reproductive growth phase." [GR:pj] comment: Usually observed at the time of transition of shoot apical meristem (a vegetative meristem) to the inflorescence apical meristem (a reproductive meristem). is_a: TO:0000654 ! shoot system growth and development trait [Term] id: TO:0006022 name: floral organ development trait def: "Traits associated with observing effects on the development of the floral organ and its parts." [GR:pj] is_a: TO:0000622 ! flower development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0048437 ! floral organ development [Term] id: TO:0006023 name: lodicule development trait def: "Traits associated with observing effects on the development of the lodicule in a grass flower (floret)." [GR:pj] is_a: TO:0006022 ! floral organ development trait [Term] id: TO:0006024 name: ectopic lodicule development def: "Ectopic development of lodicule in a grass flower (floret)." [GR:pj] is_a: TO:0002613 ! reproductive homeotic development trait is_a: TO:0006023 ! lodicule development trait [Term] id: TO:0006025 name: floral bract development trait def: "Traits associated with observing effects on the development of the floral bracts." [GR:pj] is_a: TO:0006022 ! floral organ development trait [Term] id: TO:0006026 name: floral bract number def: "Number of bracts in a flower." [GR:pj] is_a: TO:0006025 ! floral bract development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009034 ! flower bract [Term] id: TO:0006027 name: inflorescence bract development trait def: "Traits associated with observing effects on the development of the floral bracts." [GR:pj] is_a: TO:0000621 ! inflorescence development trait [Term] id: TO:0006028 name: inflorescence bract number def: "Number of given type of bracts in a inflorescence." [GR:pj] is_a: TO:0006027 ! inflorescence bract development trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009054 ! inflorescence bract [Term] id: TO:0006029 name: glume number def: "Number of glumes in an inflorescence of grass, sedge or similar plant." [GR:pj] is_a: TO:0006028 ! inflorescence bract number intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009039 ! glume [Term] id: TO:0006030 name: spikelet meristem identity def: "Trait associated to observed effect on the establishment of spikelet meristem identity or determinacy." [GR:pj] is_a: TO:0000621 ! inflorescence development trait is_a: TO:0002638 ! shoot meristem development is_a: TO:0006017 ! meristem identity [Term] id: TO:0006031 name: inflorescence size def: "An inflorescence morphology trait (TO:0000373) which is the variation in size of inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] comment: Refer to size (PATO:0000117): A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude. xref: PATO:0000117 is_a: TO:0000373 ! inflorescence morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0009049 ! inflorescence [Term] id: TO:0006032 name: panicle size def: "A panicle morphology trait (TO:0000847) which is the variation in size of panicle inflorescence." [GR:pj, TO:moorel] is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0006033 name: floret number per spikelet def: "Number of florets in a grass spikelet." [GR:pj] synonym: "FLNBPSPK" RELATED [] is_a: TO:0000670 ! floret number intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009082 ! spikelet floret intersection_of: occurs_in PO:0009051 ! spikelet [Term] id: TO:0006034 name: tertiary branch number def: "A tertiary branching of inflorescence (TO:0006035) trait which is the number of tertiary branches in an inflorescence (PO:0009049)." [GR:pj, PO:0009049, TO:moorel] is_a: TO:0006035 ! tertiary branching of inflorescence [Term] id: TO:0006035 name: tertiary branching of inflorescence def: "An inflorescence branching (TO:0000050) trait which is the extent of tertiary branching that usually determines the shape and compactness of the inflorescence (PO:0009049) (such as in rice panicle)." [GR:pj, PO:0009049, TO:moorel] is_a: TO:0000050 ! inflorescence branching [Term] id: TO:0006036 name: stem elongation def: "Elongation of the stem." [GR:pj] comment: Alternative associated traits are stem length (TO:0000576) and shoot elongation rate (TO:0000368). is_a: TO:0000654 ! shoot system growth and development trait [Term] id: TO:0006037 name: carpel shape def: "A carpel morphology trait (TO:0006012) which is the shape of a carpel (PO:0009030)." [GR:pj, PO:0009030, TO:moorel] comment: Refer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 is_a: TO:0006012 ! carpel morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0009030 ! carpel [Term] id: TO:0006038 name: floral organ number def: "A floral organ morphology trait (TO:0000862) which is the number of floral organ (PO:0025395) types in a flower (PO:0009046)." [GR:pj, PO:0009046, TO:moorel] is_a: TO:0000862 ! floral organ morphology trait [Term] id: TO:0006039 name: petal number def: "A petal morphology trait (TO:0000863) which is the number of petals (PO:0009032) in a flower (PO:0009049)." [GR:pj, PO:0009032, PO:0009049, TO:moorel] is_a: TO:0000863 ! petal morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009032 ! petal [Term] id: TO:0006040 name: sepal number def: "A sepal morphology trait (TO:0000864) which is the number of the sepals (PO:0009031) in a flower (PO:0009049)." [GR:pj, PO:0009031, PO:0009049, TO:moorel] is_a: TO:0000864 ! sepal morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009031 ! sepal [Term] id: TO:0006041 name: tepal number def: "A tepal morphology trait (TO:0000865) which is the number of the tepals (PO:0009033) in a flower (PO:0009049)." [GR:pj, PO:0009033, PO:0009049, TO:moorel] is_a: TO:0000865 ! tepal morphology trait intersection_of: PATO:0001555 ! has number of intersection_of: inheres_in PO:0009033 ! tepal [Term] id: TO:0006042 name: lithium concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of lithium (CHEBI:33298) in some plant structure (PO:0009011)." [GR:Karthik] comment: May be assayed for per gram fresh weight. xref: CHEBI:33298 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:30145 ! lithium atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:38:27Z [Term] id: TO:0006043 name: boron concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of boron (CHEBI:22916) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:22916 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:27560 ! boron atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:49:08Z [Term] id: TO:0006044 name: magnesium concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of magnesium (CHEBI:25108) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:25108 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:25107 ! magnesium atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:50:28Z [Term] id: TO:0006045 name: phosphorus concentration def: "A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)" [GR:Karthik] xref: CHEBI:26082 is_a: TO:0001024 ! phosphorus content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:28659 ! phosphorus atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:51:26Z [Term] id: TO:0006046 name: sulfur concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of sulfur (CHEBI:26835) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:26835 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:26833 ! sulfur atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:53:29Z [Term] id: TO:0006047 name: calcium concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of calcium (CHEBI:22985) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:22985 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:22984 ! calcium atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:54:15Z [Term] id: TO:0006048 name: manganese concentration def: "A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)" [GR:Karthik] xref: CHEBI:25154 is_a: TO:0020091 ! manganese content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:18291 ! manganese atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:55:34Z [Term] id: TO:0006049 name: iron concentration def: "An iron content (TO:0020089) which is the concentration of iron (CHEBI:24873) in some plant structure (PO:0009011)" [GR:Karthik] xref: CHEBI:24873 is_a: TO:0020089 ! iron content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:18248 ! iron atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:56:30Z [Term] id: TO:0006050 name: cobalt concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of cobalt (CHEBI:33888) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:33888 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:27638 ! cobalt atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:57:41Z [Term] id: TO:0006051 name: nickel concenteration def: "The total Nickel ion concentration measured in a given volume of a plant or a plant part or plant extract." [GR:Karthik] is_a: TO:0000465 ! mineral and ion content related trait created_by: jaiswalp creation_date: 2010-10-25T04:58:31Z [Term] id: TO:0006052 name: copper concentration def: "A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in some plant structure (PO:0009011)" [GR:Karthik] xref: CHEBI:23377 is_a: TO:0020092 ! copper content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:28694 ! copper atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:59:17Z [Term] id: TO:0006053 name: zinc concentration def: "A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:27364) in some plant structure (PO:0009011)" [GR:Karthik] xref: CHEBI:27364 is_a: TO:0020090 ! zinc content intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:27363 ! zinc atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:59:26Z [Term] id: TO:0006054 name: arsenic concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of arsenic (CHEBI:22632) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:22632 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:27563 ! arsenic atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:59:32Z [Term] id: TO:0006055 name: selenium concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of selenium (CHEBI:26628) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:26628 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:27568 ! selenium atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:59:38Z [Term] id: TO:0006056 name: molybdenum concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of molybdenum (CHEBI:25370) in some plant structure (PO:0009011)." [GR:Karthik] xref: CHEBI:25370 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:28685 ! molybdenum atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T04:59:53Z [Term] id: TO:0006057 name: cuperous ion concentration def: "The total Cu2+ ion concentration measured in a given volume of a plant or a plant part or plant extract." [GR:pj] is_a: TO:0006052 ! copper concentration created_by: jaiswalp creation_date: 2010-10-25T05:04:14Z [Term] id: TO:0006058 name: cuperic ion concentration def: "The total Cu3+ ion concentration measured in a given volume of a plant or a plant part or plant extract." [GR:pj] is_a: TO:0006052 ! copper concentration created_by: jaiswalp creation_date: 2010-10-25T05:04:19Z [Term] id: TO:0006059 name: cadmium concentration def: "A mineral and ion content related trait (TO:0000465) which is the concentration of cadmium (CHEBI:22978) in some plant structure (PO:0009011).\n." [GR:Karthik] xref: CHEBI:22978 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000033 ! concentration of intersection_of: inheres_in CHEBI:22977 ! cadmium atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2010-10-25T05:09:12Z [Term] id: TO:0006060 name: leaf chlorosis alt_id: TO:0020113 def: "A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll." [GR:Karthik, TO:moorel] comment: Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue. is_a: TO:0000326 ! leaf color created_by: jaiswalp creation_date: 2010-10-25T05:13:05Z [Term] id: TO:0006061 name: days to germinate def: "Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl." [GR:curators] is_a: TO:0000933 ! plant phenological trait created_by: jaiswalp creation_date: 2010-10-25T05:23:52Z [Term] id: TO:0006062 name: plant width def: "The average width of a plant measured across an axis such as the main stem/stalk." [GR:pj] is_a: TO:0000398 ! whole plant morphology trait created_by: jaiswalp creation_date: 2010-10-25T05:27:37Z [Term] id: TO:0006063 name: leaf margin serrated def: "A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128)." [GR:curators, PO:0020128, POC:cooperl] comment: Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex. xref: PATO:0001206 is_a: TO:0002635 ! leaf margin morphology trait intersection_of: PATO:0001206 ! serrated intersection_of: inheres_in PO:0020128 ! leaf margin created_by: jaiswalp creation_date: 2010-10-25T05:30:17Z [Term] id: TO:0006064 name: rolled leaf def: "Leaf lamina rolled into a tube like structure." [GR:Karthik] is_a: TO:0000655 ! leaf growth and development trait created_by: jaiswalp creation_date: 2010-10-25T05:34:19Z [Term] id: TO:0006065 name: seedling hypocotyl length def: "A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291)." [GR:Karthik, PO:0025291, POC:cooperl] xref: PATO:0000122 xref: TO_GIT:64 is_a: TO:0000769 ! seedling hypocotyl morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025291 ! seedling hypocotyl created_by: jaiswalp creation_date: 2010-10-25T05:36:01Z [Term] id: TO:0006066 name: leaf trichome density def: "Measurement of trichomes found in per unit area of a leaf." [GR:curators] is_a: TO:0002722 ! leaf pubescence created_by: jaiswalp creation_date: 2010-10-25T05:37:25Z [Term] id: TO:0006067 name: aphid resistance def: "Resistance displayed by the plant to the aphid infestation." [GR:pj] comment: Aphids are members of the insect order Homoptera, family Aphididae. is_a: TO:0000261 ! insect damage resistance created_by: jaiswalp creation_date: 2010-10-25T05:38:56Z [Term] id: TO:0006068 name: germinability in dark def: "Measure of the seed's germination ability in dark." [GR:curators] is_a: TO:0000653 ! seed growth and development trait is_a: TO:0000931 ! seed quality trait created_by: jaiswalp creation_date: 2010-10-25T05:42:12Z [Term] id: TO:0006069 name: DSDS50 def: "A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50)." [GR:Karthik] is_a: TO:0000931 ! seed quality trait is_a: TO:0000933 ! plant phenological trait created_by: jaiswalp creation_date: 2010-10-25T05:44:20Z [Term] id: TO:0010001 name: percent germination def: "The percentage of seeds that germinate against the total number of seeds planted." [GR:pj] is_a: TO:0000250 ! vigor related trait [Term] id: TO:0011001 name: leaf lamina color distribution def: "Describes the way different colors, their hue and shades are distributed on a leaf lamina and its parts such as leaf margin, leaf tip, leaf veins." [GR:pj] synonym: "LFLCLDIST" RELATED [] is_a: TO:0000299 ! leaf lamina color [Term] id: TO:0011002 name: inflorescence primary branch attitude def: "An inflorescence primary branch morphology trait (TO:0000846) which is the attitude of a second order inflorescence axis (PO:0006321) in terms of upright and drooping characters." [GR:pj, PO:0006321, TO:moorel] comment: Associated to the trait inflorescence type (TO:0000267). synonym: "INFLPBRAATT" RELATED [] is_a: TO:0000846 ! inflorescence primary branch morphology trait [Term] id: TO:0011003 name: inflorescence axis color def: "An inflorescence axis morphology trait (TO:0000782) which is the color of the inflorescence axis (PO:0020122)." [GR:pj, PO:0020122, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "INFLAXISCL" RELATED [] xref: PATO:0000014 is_a: TO:0000782 ! inflorescence axis morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020122 ! inflorescence axis relationship: part_of TO:0000581 ! inflorescence color [Term] id: TO:0011004 name: inflorescence branch color def: "An inflorescence branch morphology trait (TO:0000784) which is the color of the inflorescence branch (PO:0009081)." [GR:pj, PO:0009081, TO:moorel] comment: Refer to color PATO:0000014: A composite chromatic quality composed of hue, saturation and intensity parts. synonym: "INFLBRACL" RELATED [] synonym: "panicle branch color" RELATED [] xref: PATO:0000014 is_a: TO:0000784 ! inflorescence branch morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009081 ! inflorescence branch relationship: part_of TO:0000581 ! inflorescence color [Term] id: TO:0011005 name: penultimate leaf length def: "Length of the leaf penultimate to the first leaf below the inflorescence." [GR:pj] comment: In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf. synonym: "PENLFLG" RELATED [] synonym: "second leaf length" RELATED [] is_a: TO:0000135 ! leaf length [Term] id: TO:0011006 name: penultimate leaf lamina width def: "Lamina width of the leaf penultimate to the first leaf below the inflorescence." [GR:pj] comment: In case of cereal crop plants such as rice, corn, wheat etc., first leaf below the inflorescence or the last leaf on the shoot is called the flag leaf. Penultimate leaf is the one below flag leaf. synonym: "PENLFLWD" RELATED [] synonym: "second leaf width" RELATED [] is_a: TO:0002720 ! leaf lamina width [Term] id: TO:0011007 name: awn width def: "An awn morphology trait (TO:0002718) which is the width of the awn (PO:0025349)." [GR:pj, PO:0025349, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. synonym: "AWNWD" RELATED [] xref: PATO:0000921 is_a: TO:0002718 ! awn morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0025349 ! awn [Term] id: TO:0011008 name: stigma length def: "A floral organ length (TO:0002614) that is the length of the stigma (PO:0009073)." [GR:pj] synonym: "STIGLG" RELATED [] is_a: TO:0002614 ! floral organ length intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009073 ! stigma [Term] id: TO:0011009 name: style length def: "A floral organ length (TO:0002614) that is the length of the style (PO:0009074)." [GR:pj] synonym: "silk length" NARROW [] synonym: "STYLLG" RELATED [] xref: PATO:0000122 xref: TO_GIT:113 is_a: TO:0002614 ! floral organ length intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009074 ! style [Term] id: TO:0011010 name: internode color in proxomity to colored node def: "Color of the spatial section of the internode that is found proximal (next) to the colored node of a stem." [GR:pj] synonym: "INCLPROXNDCL" RELATED [] is_a: TO:0000426 ! stem internode color [Term] id: TO:0012001 name: leaf area index def: "Leaf Area Index (LAI) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows." [Wikipedia:Leaf_area_index] comment: LAI is used to predict photosynthetic primary production and as a reference tool for crop growth. Measured on the plant canopy only. is_a: TO:0000540 ! leaf area trait created_by: jaiswalp creation_date: 2011-12-09T01:27:39Z [Term] id: TO:0012002 name: leaf chlorophyll content def: "A chlorophyll content trait (TO:0000495) which is a quality of a leaf (PO:0025034)." [PO:0025034, TO:cooperl] xref: TO_GIT:275 is_a: TO:0000495 ! chlorophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28966 ! chlorophyll intersection_of: occurs_in PO:0025034 ! leaf created_by: jaiswalp creation_date: 2011-12-09T01:52:17Z [Term] id: TO:0012003 name: chlorophyll content in an extract is_a: TO:0000495 ! chlorophyll content created_by: jaiswalp creation_date: 2011-12-09T01:54:09Z [Term] id: TO:0012004 name: quantum yield synonym: "QY" RELATED [] is_a: TO:0012006 ! fluorescence related trait created_by: jaiswalp creation_date: 2011-12-09T02:09:21Z [Term] id: TO:0012005 name: chlorophyll fluorescence induction kinetics synonym: "OJIP" RELATED [] is_a: TO:0012006 ! fluorescence related trait created_by: jaiswalp creation_date: 2011-12-09T02:09:52Z [Term] id: TO:0012006 name: fluorescence related trait is_a: TO:0000283 ! biological process trait created_by: jaiswalp creation_date: 2011-12-09T02:12:03Z [Term] id: TO:0012007 name: quantum yield determined by the light curve is_a: TO:0012004 ! quantum yield created_by: jaiswalp creation_date: 2011-12-09T02:13:21Z [Term] id: TO:0012008 name: quantum yield at a given wavelength is_a: TO:0012004 ! quantum yield created_by: jaiswalp creation_date: 2011-12-09T02:16:09Z [Term] id: TO:0012009 name: continuous fluorescence yield synonym: "FT" RELATED [] is_a: TO:0012006 ! fluorescence related trait created_by: jaiswalp creation_date: 2011-12-09T02:18:08Z [Term] id: TO:0012010 name: leaf area duration def: "Leaf Area Duration (LAD) is the ratio of total upper leaf surface of vegetation divided by the surface area of the land on which the vegetation grows. Measured over time." [group:Crop_Ontology_Group] synonym: "LAD" RELATED [] is_a: TO:0000540 ! leaf area trait created_by: jaiswalp creation_date: 2011-12-09T02:28:13Z [Term] id: TO:0012011 name: leaf senescence rate def: "Rate of loss of normal leaf color over time." [group:Crop_Ontology_Group] is_a: TO:0000655 ! leaf growth and development trait intersection_of: PATO:0000161 ! rate intersection_of: inheres_in GO:0010150 ! leaf senescence created_by: jaiswalp creation_date: 2011-12-09T02:34:15Z [Term] id: TO:0012012 name: leaf senescence duration def: "Time taken to lose normal leaf color." [group:Crop_Ontology_Group] comment: In grasses often measured for flag or the second leaf from top. is_a: TO:0000655 ! leaf growth and development trait intersection_of: PATO:0001309 ! duration intersection_of: inheres_in GO:0010150 ! leaf senescence created_by: jaiswalp creation_date: 2011-12-09T02:35:49Z [Term] id: TO:0020001 name: panicle compactness and shape def: "A panicle morphology trait (TO:0000847) which is the compactness and shape of a panicle." [TO:moorel] comment: Refer to compact (PATO:0001485): A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.\nRefer to shape (PATO:0000052): A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc). xref: PATO:0000052 xref: PATO:0001485 is_a: TO:0000847 ! panicle morphology trait [Term] id: TO:0020002 name: grain weight to panicle weight ratio is_a: TO:0000396 ! grain yield trait [Term] id: TO:0020003 name: shoot potassium content def: "The percent content of potassium ion measured in the shoots of the plant." [GR:cwt, ICRIS:019] is_a: TO:0000609 ! potassium content [Term] id: TO:0020004 name: shoot sodium content def: "The percent sodium ion content measured in the shoot." [GR:cwt, ICRIS:018] is_a: TO:0000608 ! sodium content [Term] id: TO:0020005 name: sorghum stem borer resistance def: "Causative agent:Chilo partellus. Infections causes the appearance of small elongated holes in young whorl leaves, tunelling of earheads results in breakage or chaffy earheads affecting grain development." [GCP:053, GR:cwt6] is_a: TO:0000454 ! stem borer resistance [Term] id: TO:0020006 name: chickpea pod borer is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0020007 name: sorghum shoot fly resistance def: "Causative agent:Atherigona soccata. Larval feeding results in central leaf wilting and drying causing the typical deadheart symptom." [GCP:051, GR:cwt6] is_a: TO:0000261 ! insect damage resistance [Term] id: TO:0020008 name: sorghum grain mold def: "Causative agent: Aspergillus spp and Penicillium spp. Trait is measured as extent of grain surface covered with mold." [GR:cwt, ICRIS:050] is_a: TO:0000023 ! fungal infection related grain discoloration [Term] id: TO:0020009 name: sorghum rust resistance def: "Causative agent: Puccinia purpurea. Infection causes purple, red or tan flecks on both surfaces of leaves, leaving a reddish powder on fingers when passed over it." [GR:cwt, ICRIS:049] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0020010 name: sorghum downy mildew resistance def: "Causative agent:Peronospora sp. It causes abundant downy white growth on the under surfaces of infected portions of leaves during humid weather, mature infected leaves become necrotic and intervenal tissues disintegrate to give the typical shredded leaf symptom." [GR:cwt, ICRIS:047] is_a: TO:0000439 ! fungal disease resistance [Term] id: TO:0020011 name: chickpea botrytis grey mold resistance is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0020012 name: chickpea fusarium wild resistance is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0020013 name: chickpea colleotrichum blight resistance is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0020014 name: chickpea ascochyta blight resistance is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0020015 name: sorghum leaf blight resistance xref: TO_GIT:69 is_a: TO:0000664 ! fungal blight disease resistance [Term] id: TO:0020016 name: seed texture def: "A seed morphology trait (TO:0000184) which is the texture of a seed (PO:0009010)." [PO:0009010, TO:moorel] comment: Refer to texture PATO:0000150: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics. xref: TO:0000150 xref: TO_GIT:213 is_a: TO:0000184 ! seed morphology trait intersection_of: PATO:0000150 ! texture intersection_of: inheres_in PO:0009010 ! seed [Term] id: TO:0020017 name: seed coat spotted def: "A seed coat pattern trait (TO:0000904) where the seed coat (PO:0009088) has colored spots." [PO:0009088, TO:moorel] comment: Refer to spotted (PATO:0000333): A color pattern inhering in a bearer by virtue of bearer's being marked with a round area of different hue or degree of saturation. xref: PATO:0000333 xref: TO_GIT:148 is_a: TO:0000904 ! seed coat pattern [Term] id: TO:0020018 name: tertiary shoot branch number is_a: TO:0002639 ! shoot branching [Term] id: TO:0020019 name: secondary shoot branch number is_a: TO:0002639 ! shoot branching [Term] id: TO:0020020 name: primary shoot branch number is_a: TO:0002639 ! shoot branching [Term] id: TO:0020021 name: basal axillary tertiary branch number is_a: TO:0020018 ! tertiary shoot branch number is_a: TO:0020024 ! basal axillary branch number [Term] id: TO:0020022 name: basal axillary secondary branch number is_a: TO:0020019 ! secondary shoot branch number is_a: TO:0020024 ! basal axillary branch number [Term] id: TO:0020023 name: basal axillary primary branch number is_a: TO:0020020 ! primary shoot branch number is_a: TO:0020024 ! basal axillary branch number [Term] id: TO:0020024 name: basal axillary branch number is_a: TO:0002639 ! shoot branching [Term] id: TO:0020025 name: apical axillary tertiary branch number is_a: TO:0020018 ! tertiary shoot branch number is_a: TO:0020028 ! apical axillary branch number [Term] id: TO:0020026 name: apical axillary secondary branch number is_a: TO:0020019 ! secondary shoot branch number is_a: TO:0020028 ! apical axillary branch number [Term] id: TO:0020027 name: apical axillary primary branch number is_a: TO:0020020 ! primary shoot branch number is_a: TO:0020028 ! apical axillary branch number [Term] id: TO:0020028 name: apical axillary branch number xref: GR:cwt6 is_a: TO:0002639 ! shoot branching [Term] id: TO:0020029 name: leaf lamina pubscence length def: "Length of pubescence (presence of hairs) on the leaf blade surface." [GR:cwt] is_a: TO:0000055 ! leaf lamina pubescence [Term] id: TO:0020030 name: leaf lamina pubescence density def: "Density of pubescence (presence of hairs) on the leaf blade surface." [GR:cwt] is_a: TO:0000055 ! leaf lamina pubescence [Term] id: TO:0020031 name: leaf lamina margin pubescence length def: "A leaf lamina margin pudescence (TO:0002723) trait which is the length of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009)." [GR:cwt, PO:0025009, TO:moorel] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 xref: PATO:0001320 is_a: TO:0002723 ! leaf lamina margin pubescence [Term] id: TO:0020032 name: leaf lamina margin pubescence density def: "A leaf lamina margin pubescence trait (TO:0002723) which is the density of pubescence (presence of hairs) on the leaf lamina margin (PO:0025009)." [GR:cwt6, PO:002009, TO:moorel] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. xref: PATO:0001019 xref: PATO:0001320 is_a: TO:0002723 ! leaf lamina margin pubescence [Term] id: TO:0020033 name: glume length def: "A glume morphology trait (TO:0000869) which is the length of a glume (PO:0009039) measured in mm (millimeter)." [GR:cwt, IWIS:1420, PO:0009039, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0000869 ! glume morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009039 ! glume [Term] id: TO:0020034 name: glume width def: "A glume morphology trait (TO:0000869) with is the measurement of width of glume (PO:0009039) in mm (millimeter)." [GR:cwt, IWIS:1421, PO:0009039, TO:moorel] comment: Refer to width (PATO:0000921): A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite. xref: PATO:0000921 is_a: TO:0000869 ! glume morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0009039 ! glume [Term] id: TO:0020035 name: glume pubescence density def: "A glume pubescence (TO:0020036) trait which is the measurement of glume hairines density on outer side of sterile glume (PO:0009039)." [GR:cwt, IWIS:1422, PO:0009039, TO:moorel] comment: Refer to density (PATO:0001019): A physical quality which inheres in a bearer by virtue of some influence is exerted by the bearer's mass per unit size. xref: PATO:0001019 is_a: TO:0020036 ! glume pubescence [Term] id: TO:0020036 name: glume pubescence def: "A glume morphology trait (TO:0000869) which is the extent of pubescence (presence of hairs) on the glume (PO:0009039) surface." [GR:cwt, PO:0009039, TO:moorel] comment: Refer to pubescent hair (PATO:0001320): A pilosity quality of being covered with short hairs or soft down. xref: PATO:0001320 is_a: TO:0000869 ! glume morphology trait [Term] id: TO:0020037 name: glume pubescence length def: "A glume pubescence (TO:0020036) which is the measurement of length of hairs on glume (PO:0009039)." [GR:cwt, IWIS:1423, PO:0009039, TO:moorel] comment: Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0020036 ! glume pubescence [Term] id: TO:0020038 name: glume waxiness def: "A glume morphology trait (TO:0000869) which is the presence of wax on a glume (PO:0009039)." [GR:cwt, IWIS:1412, PO:0009039, TO:moorel] comment: Refer to waxiness (PATO:0002381): A composition quality inhering in an bearer by virtue of the presence of long chain aliphatic lipids on the surface of an organism. xref: PATO:0002381 is_a: TO:0000869 ! glume morphology trait intersection_of: PATO:0002381 ! waxiness intersection_of: inheres_in PO:0009039 ! glume [Term] id: TO:0020051 name: barley leaf scald disease resistance def: "Causal agent: Rhynchosporium secalis." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms include, oval, water-soaked, blue-grey spots (1.0-1.5 cm long) developing into lesions with dry necrotic centers and dark brown margins. Lesions will coalesce under high infection levels and are not delimited by veins. synonym: "scald" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:12:24Z [Term] id: TO:0020052 name: barley spot blotch disease resistance def: "Causal agent: Cochliobolus sativus (Bipolaris sorokiniana)." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms include, uniform chocolate brown lesions that eventually merge forming irregular necrotic patches on leaves. Lesions may be surrounded by yellow zones of varying width. synonym: "spot blotch" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:19:00Z [Term] id: TO:0020053 name: wheat spot blotch disease resistance def: "Causal agent: Cochliobolus sativus (Bipolaris sorokiniana)." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms include, elongated to oval shaped dark brown lesions. Centers often lighten to dark brown or tan surrounded by an irregular dark brown ring. synonym: "Helminthosporium leaf blotch" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:21:53Z [Term] id: TO:0020054 name: barley stripe rust disease resistance def: "Causal agent: Puccinia striiformis f. sp. hordei." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: chlorotic flecks at the infection site initially appear, followed by yellow uredinia (spore masses) in prominent stripes along the leaf veins. Black telia (overseasoning structures) readily develop from uredinia as infected plants mature. synonym: "BSR" EXACT [] synonym: "yellow rust" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:25:00Z [Term] id: TO:0020055 name: wheat stripe rust disease resistance def: "Causal agent: Puccinia striiformis f. sp. tritici." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: pustules (spore masses) containing yellow to orange-yellow urediniospores form narrow stripes on leaves, leaf sheaths and glumes. synonym: "yellow rust" BROAD [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:27:45Z [Term] id: TO:0020056 name: barley leaf rust disease resistance def: "Causal agent: Puccinia hordei." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: small round orange brown pustules producing a mass of orange-brown urediniospores on the upper leaf surfaces and leaf sheaths. synonym: "brown rust" BROAD [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:29:57Z [Term] id: TO:0020057 name: wheat leaf rust disease resistance def: "Causal agent: Puccinia recondita f. sp. tritici." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: circular to slightly elliptical pustules containing masses of orange to orange-brown urediniospores on the leaf surfaces and leaf sheaths. synonym: "brown rust" BROAD [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:31:09Z [Term] id: TO:0020058 name: barley common root rot resistance def: "Causal agents: Cochliobolus sativus (Bipolaris sorokiniana), Fusarium culmorum and Fusarium pseudograminearum." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: brown lesions on the roots, especially the subcrown internode. Under severe conditions, lesions can become nearly black with brown tissue extending into the crown and leaf sheaths. Stunted plants with reduced tillering and yield. Heads can be white with fewer kernels that are small and shriveled. synonym: "crown rot" BROAD [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:33:03Z [Term] id: TO:0020059 name: wheat common root rot resistance def: "Causal agents: Cochliobolus sativus (Bipolaris sorokiniana)." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: browning of the root, crown and basal culm tissues. Plants may lodge. White spikes can appear. is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:36:24Z [Term] id: TO:0020060 name: barley powdery mildew disease resistance def: "Causal agent: Blumeria graminis f. sp. hordei." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop. is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:39:36Z [Term] id: TO:0020061 name: wheat powdery mildew disease resistance def: "Causal agent: Blumeria graminis f. sp. tritici." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: first visible signs are fuzzy white to pale grey tufts of mycelia and conidia on the upper surfaces of leaves and leaf sheaths (especially on lower leaves) and sometimes on the spikes. Older fungal tissue is yellowish grey and can be easily rubbed off. Plant tissue becomes chlorotic or necrotic. Spherical black cleistothecia may develop. is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:39:36Z [Term] id: TO:0020062 name: barley net form net blotch disease resistance def: "Causal agent: Pyrenophora teres f. teres." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: in adult plants, initial symptoms are small pinpoint to elliptical brown spots which expand to form narrow, tan to light brown lesions, often delimited by leaf veins. Within lesions, dark brown longitudinal and transverse striations appear forming a net-like pattern. In seedlings, greenish grey, water-soaked areas appear forming brown lesions with netted striations. synonym: "NFNB" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:39:36Z [Term] id: TO:0020063 name: barley spot form net blotch disease resistance def: "Causal agent: Pyrenophora teres f. maculata." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: dark brown, circular to elliptical lesions surrounded by bands of chlorosis. synonym: "SFNB" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:39:36Z [Term] id: TO:0020064 name: barley septoria disease resistance def: "Causal agent: Septoria passerinii and Stagonospora avenae f. sp. triticeae (teleomorph: Phaeosphaeria avenaria f. sp. triticeae)." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: in seedlings, S. passerinii causes faint, yellowish areas that turn greenish gray then straw colored with time forming a distinct demarcation next to healthy green tissue. On adult plants S. passerinii infection produces long, rectangular lesions delimited by veins that first appear graying then turn tan or straw colored. S. avenae f. sp. triticea produces yellow brown lesions that traverse veins and are shield or lens shaped. synonym: "SSLB" EXACT [] is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:39:36Z [Term] id: TO:0020065 name: wheat septoria leaf blotch disease resistance def: "Causal agent: Septoria tritici (Mycosphaerella graminicola), Septoria nodorum (Leptosphaeria nodorum), Septoria avenae f. sp. triticeae (Leptosphaeria avenaria f. sp. triticeae)." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: Initial infection sites tend to be irregular in shape, oval to elongated chlorotic spots or lesions. As these sites expand, the centers of the lesions become pale, straw colored, and slightly necrotic, often with numerous small black dots (pycnidia). The lesions of septoria tritici blotch tend to be linear and restricted laterally, while those of septoria nodorum blotch and septoria avenae blotch are more lens shaped. All above ground plant parts can be affected. is_a: TO:0000439 ! fungal disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:39:36Z [Term] id: TO:0020066 name: barley leaf streak resistance def: "Causal agent: Xanthomonas translucens pv. translucens and pv. undulosa." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: small, light to pale green spots which later expand into linear streaks. Streaks can extend the entire length of the leaf, that will become translucent. Infected leaves will turn yellow then brown as it dies. is_a: TO:0000315 ! bacterial disease resistance created_by: jaiswalp creation_date: 2011-08-19T12:58:34Z [Term] id: TO:0020067 name: barley yellow dwarf virus disease resistance def: "Causal agent: The Barley Yellow Dwarf Viruses, Luteovirus (Group IV (+)ssRNA)." [T-CAP:Victoria_Corollo_Blake] comment: Symptoms: uneven blotches of bright yellow discoloration on the tips and margins of older leaves, eventually progressing down toward the base, covering the entire leaf within a few weeks. Reduced internode elongation causes stunting with severe infection possibly. synonym: "BYDV" EXACT [] is_a: TO:0000148 ! viral disease resistance created_by: jaiswalp creation_date: 2011-08-19T01:00:45Z [Term] id: TO:0020068 name: beta-glucan content def: "Amount of beta-glucan present in the plant part or product (e.g. malt). Beta-Glucans are polysaccharides of D-glucose linked by beta-glycosidic bonds that vary by molecular mass, solubility, viscosity and 3D configuration." [T-CAP:Victoria_Corollo_Blake] is_a: TO:0000291 ! carbohydrate content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28793 created_by: jaiswalp creation_date: 2011-08-19T01:03:01Z [Term] id: TO:0020069 name: spike exsertion def: "A triticea trait measured in distance from the base of the spike to the flag leaf auricle." [T-CAP:Victoria_Corollo_Blake] is_a: TO:0001002 ! inflorescence exsertion created_by: jaiswalp creation_date: 2011-08-19T01:07:39Z [Term] id: TO:0020070 name: beta-glucanase activity trait def: "Activity of beta-glucanase ((1,3-1,4)-beta-D-glucan, 4-glucanohydrolase), (EC:3.2.1.73) in the hydrolysis of beta-glucans." [GO:0042972, GO:\:0052736, T-CAP:Victoria_Corollo_Blake] is_a: TO:0000599 ! enzyme activity trait intersection_of: PATO:0000001 ! quality intersection_of: inheres_in GO:0052736 ! beta-glucanase activity created_by: jaiswalp creation_date: 2011-08-19T01:10:26Z [Term] id: TO:0020071 name: beta-glucanase thermostability def: "The ability of beta-glucanase to remain active under mashing (boiling grain in water) conditions during beer making." [T-CAP:Victoria_Corollo_Blake] comment: Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73). is_a: TO:0000597 ! quality trait created_by: jaiswalp creation_date: 2011-08-19T01:18:25Z [Term] id: TO:0020072 name: residual beta-glucanase activity trait def: "Activity of beta-glucanase in the barley wort (the boiled grain and water) during the beer making process." [T-CAP:Victoria_Corollo_Blake] comment: Beta-glucanase [(1-3,1-4)-beta-D-glucan, 4-glucanohydrolase], (E.C:3.2.1.73). synonym: "residual beta-glucanase" BROAD [] is_a: TO:0000597 ! quality trait is_a: TO:0020070 ! beta-glucanase activity trait created_by: jaiswalp creation_date: 2011-08-19T01:20:23Z [Term] id: TO:0020073 name: barley wort protein concentration def: "Concentration of protein in the wort after boiling the grain with water (mashing) in the beer making process." [T-CAP:Victoria_Corollo_Blake] synonym: "wort protein" BROAD [] is_a: TO:0000597 ! quality trait is_a: TO:0000598 ! protein content created_by: jaiswalp creation_date: 2011-08-19T01:24:05Z [Term] id: TO:0020074 name: barley wort color def: "Color of the solution derived from boiling barley grain with water during the beer making process." [T-CAP:Victoria_Corollo_Blake] is_a: TO:0000597 ! quality trait created_by: jaiswalp creation_date: 2011-08-19T01:27:42Z [Term] id: TO:0020075 name: barley malt protein def: "Percent protein in the malt prior to mashing (boiling the grain with water to produce a wort) in the beer making process." [T-CAP:Victoria_Corollo_Blake] is_a: TO:0000597 ! quality trait created_by: jaiswalp creation_date: 2011-08-19T01:29:00Z [Term] id: TO:0020076 name: phenolic compound content def: "Amount of phenolics present in the plant part, whole plant or product." [T-CAP:Victoria_Corollo_Blake] comment: In barley its evaluated in ex malt. is_a: TO:0000281 ! metabolite content trait created_by: jaiswalp creation_date: 2011-08-19T01:29:58Z [Term] id: TO:0020077 name: head drop def: "A triticea trait evaluated for fertile spikes dropped before harvest." [T-CAP:Victoria_Corollo_Blake] is_a: TO:0000373 ! inflorescence morphology trait created_by: jaiswalp creation_date: 2011-08-19T01:33:35Z [Term] id: TO:0020078 name: zeaxanthin content def: "A xanthophyll content (TO:0000301) which is the amount of zeaxanthin (CHEBI:27547) in a plant structure (PO:0009011)." [] xref: CHEBI:27547 is_a: TO:0000301 ! xanthophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27547 ! zeaxanthin intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T02:49:07Z [Term] id: TO:0020079 name: beta-cryptoxanthin content xref: CHEBI:10362 is_a: TO:0000301 ! xanthophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:10362 ! beta-cryptoxanthin intersection_of: occurs_in PO:0009011 ! plant structure property_value: RO:0002581 "A xanthophyll content (TO:0000301) which is the amount of beta-cryptoxanthin (CHEBI:10362) in a plant structure (PO:0009011)." xsd:string created_by: jaiswalp creation_date: 2011-08-19T02:53:13Z [Term] id: TO:0020080 name: stover organic matter digestability def: "This trait determines the amount of organic matter from the stover that would eventually be digested by animals. Value derived from chemical and in vitro analysis with rumen microbial inoculum of dried and ground stover, usually using Near Infrared Reflectance Spectrophotometry (NIRS) after appropriate calibration." [GCP:GCP_324.0000031, ICRISAT:Vincent_Vadez, ILRI:Michael_Blummel] comment: Measured as percentage. synonym: "in vitro organic matter digestibility" EXACT [] synonym: "stover related trait" BROAD [GCP:GCP_324.000003] is_a: TO:0000327 ! shoot system yield trait created_by: jaiswalp creation_date: 2011-08-19T03:13:08Z [Term] id: TO:0020081 name: metabolized energy of stover def: "The trait takes into account energy losses occurring in the animal in faeces, urine and CH4 and estimates how much energy (in calories or joules) a given unit of ground stover is actually available for meat and milk production . Value derived from chemical and in vitro analysis of dried and ground stover." [GCP:GCP_324.0000036, ICRISAT:Vincent_Vadez, ILRI:Michael_Blummel] comment: Units: Kcal/kg. synonym: "metabolised energy" EXACT [] synonym: "stover related traits" BROAD [GCP:GCP_324.000003] is_a: TO:0000281 ! metabolite content trait created_by: jaiswalp creation_date: 2011-08-19T03:17:28Z [Term] id: TO:0020082 name: stover nitrogen content def: "A trait to measure percent nitrogen concentration in the stover sample used for predicting crude protein (CP) content of stover by multiplication with a factor of 6.25 (CP = N x 6.25). This concentration is one of the criteria to assess the quality of fodder. Value derived from the analysis of stover using Near Infrared Reflectance Spectrophotometry (NIRS)." [GCP:GCP_324.0000016, ICRISAT:Vincent_Vadez, ILRI:Michael_Blummel] synonym: "stover related traits" BROAD [GCP:GCP_324.000003] is_a: TO:0000281 ! metabolite content trait created_by: jaiswalp creation_date: 2011-08-19T03:20:23Z [Term] id: TO:0020083 name: stem diameter def: "A stem morphology trait (TO:0000361) which is the diameter of a stem (PO:0009047)." [GR:pj, PO:0009047, TO:moorel] comment: Refer to diameter (PATO:0001334): A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary. synonym: "culm diameter" RELATED [] xref: PATO:0001334 is_a: TO:0000361 ! stem morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0009047 ! stem created_by: jaiswalp creation_date: 2011-08-19T03:31:47Z [Term] id: TO:0020084 name: spiral leaf def: "A trait to measure leaf spiralling." [GR:pj] is_a: TO:0000492 ! leaf shape created_by: jaiswalp creation_date: 2011-08-19T03:33:01Z [Term] id: TO:0020085 name: stem senescence def: "A shoot development trait (TO:0000654) to measure the senescence of a stem (PO:0009047)." [GR:pj, PO:0009047, TO:moorel] comment: Refer to organ senescence (GO:0010260): The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana. synonym: "culm senescence" EXACT [] xref: GO:0010260 xref: TO_GIT:99 is_a: TO:0000654 ! shoot system growth and development trait created_by: jaiswalp creation_date: 2011-08-19T03:34:31Z [Term] id: TO:0020086 name: neck leaf presence def: "A trait to observe neck leaf presence." [GR:pj] is_a: TO:0000419 ! vascular leaf morphology trait created_by: jaiswalp creation_date: 2011-08-19T03:35:46Z [Term] id: TO:0020087 name: root cracking def: "A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part." [GR:pj] is_a: TO:0000168 ! abiotic stress trait created_by: jaiswalp creation_date: 2011-08-19T03:44:21Z [Term] id: TO:0020088 name: total water soluble content alt_id: TO:0002711 def: "A metabolite content related trait (TO:0000281) which is the concentration of water soluble components in a plant, as determined by refractive index." [GR:pj, TO:cooperl] comment: This trait is usually highly correlated with total soluble sugar content (TO:0000340). Often determined in fresh tissue. synonym: "total dissolved solids content" RELATED [] xref: TO_GIT:100 is_a: TO:0000281 ! metabolite content trait created_by: jaiswalp creation_date: 2011-08-19T03:47:00Z [Term] id: TO:0020089 name: iron content def: "A mineral and ion content related trait (TO:0000465) which is the amount of iron (CHEBI:24873) in a plant structure (PO:0009011)." [] xref: CHEBI:24873 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18248 ! iron atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:02:53Z [Term] id: TO:0020090 name: zinc content def: "A mineral and ion content related trait (TO:0000465) which is the amount of zinc (CHEBI:27364) in a plant structure (PO:0009011)." [CHEBI:27364] xref: CHEBI:27364 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27363 ! zinc atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:02:53Z [Term] id: TO:0020091 name: manganese content def: "A mineral and ion content related trait (TO:0000465) which is the amount of manganese (CHEBI:25154) in a plant structure (PO:0009011)." [] xref: CHEBI:25154 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:18291 ! manganese atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:02:53Z [Term] id: TO:0020092 name: copper content def: "A mineral and ion content related trait (TO:0000465) which is the amount of copper (CHEBI:23377) in a plant structure (PO:0009011)." [] xref: CHEBI:23377 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:28694 ! copper atom intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:02:53Z [Term] id: TO:0020093 name: nitrogen content def: "A mineral and ion content related trait (TO:0000465) which is the amount of nitrogen (CHEBI:51143) in a plant structure (PO:0009011)." [] xref: CHEBI:51143 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:51143 ! nitrogen molecular entity intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:02:53Z [Term] id: TO:0020094 name: nitrate content def: "A mineral and ion content related trait (TO:0000465) which is the amount of nitrate (CHEBI:17632) in a plant structure (PO:0009011)." [] xref: CHEBI:17632 is_a: TO:0020093 ! nitrogen content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:17632 ! nitrate intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:02:53Z [Term] id: TO:0020095 name: stomatal process related trait def: "Trait associated with any of the stomatal opening, closure, conductance, resistance process." [TO:contributors] is_a: TO:0000283 ! biological process trait created_by: jaiswalp creation_date: 2011-08-19T04:06:44Z [Term] id: TO:0020096 name: mineral and ion transport trait def: "Trait associated with directed movement of minerals and ions into, out of, within or between cells." [TO:contributors] is_a: TO:0000283 ! biological process trait created_by: jaiswalp creation_date: 2011-08-19T04:08:23Z [Term] id: TO:0020097 name: stomatal opening def: "A trait to measure the physiological parameters involved in the process of opening of stomatal pores." [GR:pj, TO:contributors] is_a: TO:0020095 ! stomatal process related trait created_by: jaiswalp creation_date: 2011-08-19T04:09:49Z [Term] id: TO:0020098 name: nitrate sensitivity def: "The sensitivity to the nitrate content in the growth medium." [GR:pj, TO:contributors] is_a: TO:0000011 ! nitrogen sensitivity intersection_of: PATO:0000085 ! sensitivity toward intersection_of: inheres_in CHEBI:17632 ! nitrate intersection_of: occurs_in PO:0000003 ! whole plant created_by: jaiswalp creation_date: 2011-08-19T04:11:32Z [Term] id: TO:0020099 name: nitrate transport def: "Trait associated with directed movement of nitrate into, out of, within or between cells." [TO:contributors] is_a: TO:0020096 ! mineral and ion transport trait created_by: jaiswalp creation_date: 2011-08-19T04:13:47Z [Term] id: TO:0020100 name: nitrate uptake def: "The total nitrate ion uptake measured in a plant or a plant part." [TO:contributors] is_a: TO:0020096 ! mineral and ion transport trait created_by: jaiswalp creation_date: 2011-08-19T04:13:47Z [Term] id: TO:0020101 name: starch mobilization def: "Trait associated with directed movement of starch." [TO:contributors] is_a: TO:0020096 ! mineral and ion transport trait created_by: jaiswalp creation_date: 2011-08-19T04:13:47Z [Term] id: TO:0020102 name: phosphate content def: "A mineral and ion content related trait (TO:0000465) which is the amount of phosphate (CHEBI:26020) in a plant structure (PO:0009011)." [CHEBI:26020] synonym: "phosphate ion content" EXACT [] xref: CHEBI:26020 is_a: TO:0000465 ! mineral and ion content related trait intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:26020 ! phosphate intersection_of: occurs_in PO:0000003 ! whole plant created_by: jaiswalp creation_date: 2011-08-19T04:16:58Z [Term] id: TO:0020103 name: adventitious root length def: "Average maximum length of adventitious root of a plant in a study." [TO:contributors] is_a: TO:0000227 ! root length created_by: jaiswalp creation_date: 2011-08-19T04:18:45Z [Term] id: TO:0020104 name: adventitious rootless def: "Absence of adventitious roots in the plant." [TO:contributors] is_a: TO:0000084 ! root number created_by: jaiswalp creation_date: 2011-08-19T04:19:49Z [Term] id: TO:0020105 name: CW-cytoplasmic male sterility def: "A trait to measure the CW type of ytoplasmic male sterility in plants." [TO:contributors] comment: Often measured by abnormal pollen germination. is_a: TO:0000580 ! cytoplasmic male sterility created_by: jaiswalp creation_date: 2011-08-19T04:21:39Z [Term] id: TO:0020106 name: Indole-3-acetic acid content def: "An auxin content (TO:0002672) which is the amount of indole-3-acetic acid (CHEBI:16411) in a plant structure (PO:0009011)." [] synonym: "IAA content" EXACT [] synonym: "Indole-3-acetic acid (IAA) content" EXACT [] xref: CHEBI:16411 is_a: TO:0002672 ! auxin content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:16411 ! indole-3-acetic acid intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:24:06Z [Term] id: TO:0020107 name: plant cell length def: "A plant cell morphology trait (TO:0002683) which is the length of a plant cell (PO:0009002)." [GR:pj, PO:0009002, TO:moorel] comment: Refer to length PATO:0000122: A 1-D extent quality which is equal to the distance between two points. xref: PATO:0000122 is_a: TO:0002683 ! plant cell morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0009002 ! plant cell created_by: jaiswalp creation_date: 2011-08-19T04:25:39Z [Term] id: TO:0020108 name: root cortical cell length def: "Length of the root epidermal cell length." [GR:pj] is_a: TO:0020107 ! plant cell length created_by: jaiswalp creation_date: 2011-08-19T04:26:36Z [Term] id: TO:0020109 name: vascular bundle development trait def: "Traits associated with observing effects on the development of vascular bundle." [TO:contributors] is_a: TO:0000470 ! vascular tissue morphology trait is_a: TO:0006015 ! plant tissue development trait created_by: jaiswalp creation_date: 2011-08-19T04:27:34Z [Term] id: TO:0020110 name: gynoecium development trait def: "Traits associated with observing effects on the development of the gynoecium." [TO:contributors] is_a: TO:0000928 ! plant structure growth and development trait intersection_of: PATO:0001236 ! process quality intersection_of: inheres_in GO:0048467 ! gynoecium development created_by: jaiswalp creation_date: 2011-08-19T04:29:46Z [Term] id: TO:0020111 name: ovary development trait def: "Traits associated with observing effects on the development of the ovary." [TO:contributors] is_a: TO:0020110 ! gynoecium development trait created_by: jaiswalp creation_date: 2011-08-19T04:30:47Z [Term] id: TO:0020112 name: phosphorus toxicity def: "Accumulation of phosphate level in a plant or a plant part at toxic level." [TO:contributors] is_a: TO:0000102 ! phosphorus sensitivity created_by: jaiswalp creation_date: 2011-08-19T04:31:40Z [Term] id: TO:0020114 name: shoot phosphorus content def: "Amount of phosphorus in the shoot." [TO:contributors] is_a: TO:0001024 ! phosphorus content created_by: jaiswalp creation_date: 2011-08-19T04:35:33Z [Term] id: TO:0020115 name: chlorophyll fluorescence quenching def: "The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules." [TO:contributors] is_a: TO:0012006 ! fluorescence related trait created_by: jaiswalp creation_date: 2011-08-19T04:36:34Z [Term] id: TO:0020116 name: photochemical quenching def: "The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under light conditions." [GR:pj, TO:contributors] is_a: TO:0012006 ! fluorescence related trait created_by: jaiswalp creation_date: 2011-08-19T04:37:43Z [Term] id: TO:0020117 name: non photochemical quenching def: "The process to maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules under no light conditions." [GR:pj, TO:contributors] synonym: "NPQ" RELATED [] is_a: TO:0012006 ! fluorescence related trait created_by: jaiswalp creation_date: 2011-08-19T04:37:43Z [Term] id: TO:0020118 name: neoxanthin content def: "A xanthophyll content (TO:0000301) which is the amount of neoxanthin (CHEBI:25501) in a plant structure (PO:0009011)." [] xref: CHEBI:25501 is_a: TO:0000301 ! xanthophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:25501 ! neoxanthin intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:39:32Z [Term] id: TO:0020119 name: violaxanthin content def: "A xanthophyll content (TO:0000301) which is the amount of violaxanthin (CHEBI:27295) in a plant structure (PO:0009011)." [] xref: CHEBI:27295 is_a: TO:0000301 ! xanthophyll content intersection_of: PATO:0000025 ! composition intersection_of: inheres_in CHEBI:27295 ! violaxanthin intersection_of: occurs_in PO:0009011 ! plant structure created_by: jaiswalp creation_date: 2011-08-19T04:40:04Z [Term] id: TO:0020120 name: involucral bract spine presence def: "An inflorescence bract morphology trait (TO:0000819) which is the presence of spines on an involucral bract (PO:0009045)." [GR:pj, TO:cooperl] synonym: "spines on involucral bracts" EXACT [] xref: TO_GIT:110 is_a: TO:0000816 ! inflorescence bract morphology trait created_by: jaiswalp creation_date: 2011-08-19T04:50:17Z [Term] id: TO:0020121 name: arachnid damage resistance def: "An assay to determine the resistance exhibited by a plant or a group of plants (population) in response to arachnids as compared to the susceptible and/or the reference plants of the same species." [GR:pj] is_a: TO:0000054 ! animal damage resistance created_by: jaiswalp creation_date: 2011-08-19T04:55:55Z [Term] id: TO:0020122 name: two-spotted spider mite resistance def: "Causal agent: Tetranychus urticae." [GR:pj, TO:contributors] synonym: "red spider mite resistance" EXACT [] is_a: TO:0020121 ! arachnid damage resistance created_by: jaiswalp creation_date: 2011-08-19T04:56:56Z [Term] id: TO:0020123 name: ethanol yield from biomass def: "A trait to measure the ethanol yield from the industrial processing of feedstock (biomass)." [GR:pj, TO:contributors] comment: Often measured as volume/mass unit used by DOE-USA. It's also consistent with the common measure of fuel ethanol (volume, not mass) and common measure of biomass. Please note that ethanol yield in liters per megagram would depend on both the ethanol conversion process and the composition (not just the quantity) of the biomass. And in most cases (at least for breeding), it probably would be predicted ethanol yield instead of ethanol yield that is directly measured from a pretreatment and fermentation process. is_a: TO:0000371 ! yield trait created_by: jaiswalp creation_date: 2011-08-19T05:09:40Z [Term] id: TO:1000000 name: stem internode bent def: "A stem internode morphology trait (TO:0000756) where the stem internode (PO:0020142) is bent." [TO:cooperl] comment: Refers to bent (PATO:0000617): a shape quality inhering in a bearer by virtue of the bearer's having one or more angle(s) in its length. is_a: TO:0000756 ! stem internode morphology trait intersection_of: PATO:0000052 ! shape intersection_of: inheres_in PO:0020142 ! stem internode created_by: cooperl creation_date: 2015-11-24T22:16:25Z [Term] id: TO:1000001 name: obsolete cotyledon size def: "OBSOLETE. A trait which is associated with the size of a cotyledon." [TO:TermGenie] comment: This term was obsoleted at the TermGenie Gatekeeper stage. synonym: "seed leaf size" EXACT [TO:TermGenie] is_obsolete: true created_by: cjmungall creation_date: 2015-11-30T17:23:54Z [Term] id: TO:1000002 name: secondary xylem volumetric density def: "A trait which is associated with the volumetric density of a secondary xylem." [TO:TermGenie] synonym: "wood volumetric density" EXACT [TO:TermGenie] is_a: PATO:0001353 {is_inferred="true"} ! volumetric density is_a: TO:0000470 {is_inferred="true"} ! vascular tissue morphology trait intersection_of: PATO:0001353 ! volumetric density intersection_of: inheres_in PO:0005848 ! secondary xylem relationship: inheres_in PO:0005848 {is_inferred="true"} ! secondary xylem created_by: cjmungall creation_date: 2015-11-30T17:23:56Z [Term] id: TO:1000003 name: shoot axis node color def: "A trait which is associated with the color of a shoot axis node." [TO:TermGenie] synonym: "shoot axis node colour" EXACT [TO:TermGenie] synonym: "shoot axis node relative color" EXACT [TO:TermGenie] is_a: PATO:0000014 {is_inferred="true"} ! color is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0005004 ! shoot axis node relationship: inheres_in PO:0005004 {is_inferred="true"} ! shoot axis node created_by: cjmungall creation_date: 2015-11-30T17:23:58Z [Term] id: TO:1000004 name: infructescence position def: "An infructescence morphology trait (TO:0000920) which is the position of an infructescence (PO:0006342)." [TO:cooperl] is_a: TO:0000920 ! infructescence morphology trait intersection_of: PATO:0000140 ! position intersection_of: inheres_in PO:0006342 ! infructescence created_by: cooperl creation_date: 2015-12-10T00:13:35Z [Term] id: TO:1000006 name: tuberous root tuber diameter def: "A tuberous root tuber morphology trait (TO:1000007) which is the diameter of a tuberous root tuber (PO:0025476)." [TO:TermGenie] synonym: "root tuber diameter" RELATED [TO:TermGenie] synonym: "storage root diameter" EXACT [TO:TermGenie] is_a: TO:1000007 ! tuberous root tuber morphology trait intersection_of: PATO:0001334 ! diameter intersection_of: inheres_in PO:0025476 ! tuberous root tuber created_by: marieangelique.laporte creation_date: 2015-12-11T15:55:08Z [Term] id: TO:1000007 name: tuberous root tuber morphology trait def: "A tuber morphology trait (TO:0000741) which is the quality of a tuberous root tuber (PO:0025476)." [TO:malaporte] is_a: TO:0000741 ! tuber morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025476 ! tuberous root tuber created_by: marieangelique.laporte creation_date: 2015-12-11T16:05:03Z [Term] id: TO:1000008 name: branch position def: "A branch morphology trait (TO:0000740) which is the position of a branch (PO:0025073)." [TO:TermGenie] synonym: "shoot axis branch position" EXACT [TO:TermGenie] is_a: PATO:0000140 {is_inferred="true"} ! position is_a: TO:0000740 {is_inferred="true"} ! branch morphology trait intersection_of: PATO:0000140 ! position intersection_of: inheres_in PO:0025073 ! branch relationship: inheres_in PO:0025073 {is_inferred="true"} ! branch created_by: marieangelique.laporte creation_date: 2015-12-16T09:38:12Z [Term] id: TO:1000009 name: branch angle def: "A branch morphology trait (TO:0000740) which is the angle of a branch (PO:0025073)." [TO:TermGenie] synonym: "branching angle" EXACT [] synonym: "shoot axis branch angle" EXACT [TO:TermGenie] is_a: PATO:0002326 {is_inferred="true"} ! angle is_a: TO:0000740 {is_inferred="true"} ! branch morphology trait intersection_of: PATO:0002326 ! angle intersection_of: inheres_in PO:0025073 ! branch relationship: inheres_in PO:0025073 {is_inferred="true"} ! branch created_by: marieangelique.laporte creation_date: 2015-12-16T14:12:59Z [Term] id: TO:1000010 name: caruncle color def: "A cardinal part of a multi-tissue plant structure morphology trait (TO:0000837) which is the color of a caruncle (PO:0020060)." [TO:TermGenie] synonym: "caruncle colour" EXACT [TO:TermGenie] is_a: PATO:0000014 {is_inferred="true"} ! color is_a: TO:0000837 {is_inferred="true"} ! cardinal part of a multi-tissue plant structure morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0020060 ! caruncle relationship: inheres_in PO:0020060 {is_inferred="true"} ! caruncle created_by: marieangelique.laporte creation_date: 2015-12-16T14:18:40Z [Term] id: TO:1000011 name: fruit position def: "A fruit morphology trait (TO:0002629) which is the position of a fruit (PO:0009001)." [TO:cooperl] synonym: "accessory fruit position" NARROW [TO:TermGenie] synonym: "achene position" NARROW [TO:TermGenie] synonym: "acorn position" NARROW [TO:TermGenie] synonym: "aggregate fruit position" NARROW [TO:TermGenie] synonym: "akene position" NARROW [TO:TermGenie] synonym: "anthocarp position" NARROW [TO:TermGenie] synonym: "berry position" NARROW [TO:TermGenie] synonym: "capsule position" NARROW [TO:TermGenie] synonym: "caryopsides position" NARROW [TO:TermGenie] synonym: "caryopsis position" NARROW [TO:TermGenie] synonym: "circumcissile capsule position" NARROW [TO:TermGenie] synonym: "citrus fruit position" NARROW [TO:TermGenie] synonym: "coenocarp position" NARROW [TO:TermGenie] synonym: "cypsela position" NARROW [TO:TermGenie] synonym: "diclesium position" NARROW [TO:TermGenie] synonym: "diplotegia position" NARROW [TO:TermGenie] synonym: "diplotegium position" NARROW [TO:TermGenie] synonym: "drupe position" NARROW [TO:TermGenie] synonym: "folliceta position" NARROW [TO:TermGenie] synonym: "follicetum position" NARROW [TO:TermGenie] synonym: "fruit location" EXACT [TO:TermGenie] synonym: "fruit placement" EXACT [TO:TermGenie] synonym: "glandes position" NARROW [TO:TermGenie] synonym: "glans position" NARROW [TO:TermGenie] synonym: "grain position" NARROW [TO:TermGenie] synonym: "hesperidia position" NARROW [TO:TermGenie] synonym: "hesperidium position" NARROW [TO:TermGenie] synonym: "hip position" NARROW [TO:TermGenie] synonym: "kernel position" NARROW [TO:TermGenie] synonym: "legume position" NARROW [TO:TermGenie] synonym: "loculicidal capsule position" NARROW [TO:TermGenie] synonym: "loment position" NARROW [TO:TermGenie] synonym: "lomentum position" NARROW [TO:TermGenie] synonym: "multiple fruit position" NARROW [TO:TermGenie] synonym: "nut position" NARROW [TO:TermGenie] synonym: "nutlet position" NARROW [TO:TermGenie] synonym: "pepo position" NARROW [TO:TermGenie] synonym: "pod position" NARROW [TO:TermGenie] synonym: "pome position" NARROW [TO:TermGenie] synonym: "poricidal capsule position" NARROW [TO:TermGenie] synonym: "pyxides location" NARROW [TO:TermGenie] synonym: "pyxides position" NARROW [TO:TermGenie] synonym: "pyxis position" NARROW [TO:TermGenie] synonym: "samara position" NARROW [TO:TermGenie] synonym: "schizocarp location" NARROW [TO:TermGenie] synonym: "schizocarp position" NARROW [TO:TermGenie] synonym: "septicidal capsule position" NARROW [TO:TermGenie] synonym: "silicle location" NARROW [TO:TermGenie] synonym: "silicle position" NARROW [TO:TermGenie] synonym: "silicula position" NARROW [TO:TermGenie] synonym: "silicula relational spatial quality" NARROW [TO:TermGenie] synonym: "siliqua position" NARROW [TO:TermGenie] synonym: "silique position" NARROW [TO:TermGenie] synonym: "stone fruit position" NARROW [TO:TermGenie] synonym: "syconia position" NARROW [TO:TermGenie] synonym: "syconium position" NARROW [TO:TermGenie] synonym: "syncarp position" NARROW [TO:TermGenie] synonym: "utricle location" NARROW [TO:TermGenie] synonym: "utricle position" NARROW [TO:TermGenie] is_a: PATO:0000140 {is_inferred="true"} ! position is_a: TO:0002629 {is_inferred="true"} ! fruit morphology trait intersection_of: PATO:0000140 ! position intersection_of: inheres_in PO:0009001 ! fruit relationship: inheres_in PO:0009001 {is_inferred="true"} ! fruit created_by: cooperl creation_date: 2015-12-30T18:26:07Z [Term] id: TO:1000012 name: whole plant size def: "A whole plant morphology trait (TO:0000398) which is the size of a whole plant (PO:0000003)." [TO:cooperl] synonym: "bush size" NARROW [TO:TermGenie] synonym: "clonal colony size" RELATED [TO:TermGenie] synonym: "colony size" RELATED [TO:TermGenie] synonym: "frutex size" NARROW [TO:TermGenie] synonym: "frutices size" NARROW [TO:TermGenie] synonym: "gametophyte size" NARROW [TO:TermGenie] synonym: "herb size" NARROW [TO:TermGenie] synonym: "liana size" NARROW [TO:TermGenie] synonym: "planta entera (Spanish) size" EXACT [TO:TermGenie] synonym: "prothalli size" NARROW [TO:TermGenie] synonym: "prothallium size" NARROW [TO:TermGenie] synonym: "prothallus size" NARROW [TO:TermGenie] synonym: "seedling size" NARROW [TO:TermGenie] synonym: "shrub size" NARROW [TO:TermGenie] synonym: "sporophyte size" NARROW [TO:TermGenie] synonym: "suffrutex size" NARROW [TO:TermGenie] synonym: "suffrutices size" NARROW [TO:TermGenie] synonym: "tree size" NARROW [TO:TermGenie] synonym: "vine size" NARROW [TO:TermGenie] synonym: "woody clump size" NARROW [TO:TermGenie] is_a: PATO:0000117 {is_inferred="true"} ! size is_a: TO:0000398 {is_inferred="true"} ! whole plant morphology trait intersection_of: PATO:0000117 ! size intersection_of: inheres_in PO:0000003 ! whole plant relationship: inheres_in PO:0000003 {is_inferred="true"} ! whole plant created_by: cooperl creation_date: 2015-12-30T19:41:19Z [Term] id: TO:1000013 name: leaf lamina lobe morphology trait def: "A cardinal organ part morphology trait (TO:0000754) which is a quality of a leaf lamina lobe (PO:0025517)." [TO:TermGenie] synonym: "leaf lobe morphology trait" EXACT [] is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0025517 ! leaf lamina lobe relationship: inheres_in PO:0025517 {is_inferred="true"} ! leaf lamina lobe created_by: marieangelique.laporte creation_date: 2016-01-05T10:49:33Z [Term] id: TO:1000014 name: leaf lamina lobe length def: "A leaf lamina lobe morphology trait (TO:1000013) which is the length of a leaf lamina lobe (PO:0025517)." [TO:TermGenie] synonym: "leaf lobe length" EXACT [] is_a: PATO:0000122 {is_inferred="true"} ! length is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0025517 ! leaf lamina lobe relationship: inheres_in PO:0025517 {is_inferred="true"} ! leaf lamina lobe created_by: marieangelique.laporte creation_date: 2016-01-05T11:01:12Z [Term] id: TO:1000015 name: leaf lamina lobe width def: "A leaf lamina lobe morphology trait (TO:1000013) which is the width of a leaf lamina lobe (PO:0025517)." [TO:TermGenie] synonym: "leaf lobe width" RELATED [] is_a: PATO:0000921 {is_inferred="true"} ! width is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait intersection_of: PATO:0000921 ! width intersection_of: inheres_in PO:0025517 ! leaf lamina lobe relationship: inheres_in PO:0025517 {is_inferred="true"} ! leaf lamina lobe created_by: marieangelique.laporte creation_date: 2016-01-05T11:04:25Z [Term] id: TO:1000016 name: plant ovary color def: "A plant ovary morphology (TO:10000021) which is the color of a plant ovary (PO:0009072)." [TO:TermGenie] synonym: "plant ovary colour" EXACT [] synonym: "plant ovary relative color" NARROW [] is_a: PATO:0000014 ! color is_a: TO:1000021 ! plant ovary morphology intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0009072 ! plant ovary created_by: marieangelique.laporte creation_date: 2016-01-05 [Term] id: TO:1000017 name: stem cortex color def: "A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem cortex (PO:0025612)." [TO:TermGenie] synonym: "stem cortex colour" EXACT [TO:TermGenie] synonym: "stem cortex relative color" EXACT [TO:TermGenie] is_a: PATO:0000014 {is_inferred="true"} ! color is_a: TO:0000843 {is_inferred="true"} ! portion of plant tissue morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025612 ! stem cortex relationship: inheres_in PO:0025612 {is_inferred="true"} ! stem cortex created_by: marieangelique.laporte creation_date: 2016-01-05T14:08:59Z [Term] id: TO:1000018 name: stem epidermis color def: "A portion of plant tissue morphology trait (TO:0000843) which is the color of a stem epidermis (PO:0025178)." [TO:TermGenie] synonym: "stem epidermis colour" EXACT [TO:TermGenie] synonym: "stem epidermis relative color" EXACT [TO:TermGenie] is_a: PATO:0000014 {is_inferred="true"} ! color is_a: TO:0000843 {is_inferred="true"} ! portion of plant tissue morphology trait intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025178 ! stem epidermis relationship: inheres_in PO:0025178 {is_inferred="true"} ! stem epidermis created_by: marieangelique.laporte creation_date: 2016-01-05T14:11:24Z [Term] id: TO:1000019 name: disk flower color def: "A flower color trait (TO:0000537) which is the color of a disk flower (PO:0025332)." [TO:TermGenie] synonym: "disc floret color" EXACT [TO:TermGenie] synonym: "disk floret color" EXACT [TO:TermGenie] is_a: TO:0000537 {is_inferred="true"} ! flower color intersection_of: PATO:0000014 ! color intersection_of: inheres_in PO:0025332 ! disk flower relationship: inheres_in PO:0025332 {is_inferred="true"} ! disk flower created_by: marieangelique.laporte creation_date: 2016-01-05T14:21:10Z [Term] id: TO:1000020 name: stipule length def: "A cardinal organ part morphology trait (TO:0000754) which is the length of a stipule (PO:0020041)." [TO:TermGenie] is_a: PATO:0000122 {is_inferred="true"} ! length is_a: TO:0000754 {is_inferred="true"} ! cardinal organ part morphology trait intersection_of: PATO:0000122 ! length intersection_of: inheres_in PO:0020041 ! stipule relationship: inheres_in PO:0020041 {is_inferred="true"} ! stipule created_by: marieangelique.laporte creation_date: 2016-01-05T14:57:02Z [Term] id: TO:1000021 name: plant ovary morphology def: "A plant structure morphology trait (TO:0000839) which is a quality of a plant ovary (PO:0009072)." [TO:TermGenie] synonym: "Poaceae ovary morphology" NARROW [TO:TermGenie] synonym: "Zea ovary morphology" NARROW [TO:TermGenie] is_a: TO:0000839 {is_inferred="true"} ! plant structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009072 ! plant ovary relationship: inheres_in PO:0009072 {is_inferred="true"} ! plant ovary created_by: cooperl creation_date: 2016-01-06T01:44:00Z [Term] id: TO:1000022 name: anther morphology trait def: "A collective plant organ structure trait (TO:0000842) which is the quality of an anther (PO:0009066)." [TO:austinmeier] xref: TO_GIT:385 is_a: TO:0000842 ! collective plant organ structure morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009066 ! anther relationship: part_of TO:0000215 ! stamen morphology trait created_by: meiera creation_date: 2016-02-20T00:23:55Z [Term] id: TO:1000023 name: lemma morphology trait def: "A flower bract morphology trait (TO:0000079) which is the quality of a lemma (PO:0009037)." [TO:cooperl] xref: TO_GIT:390 is_a: TO:0000079 ! flower bract morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009037 ! lemma created_by: cooperl creation_date: 2016-03-16 [Term] id: TO:1000024 name: palea morphology trait def: "A flower bract morphology trait (TO:0000079) which is the quality of a palea (PO:0009038)." [TO:cooperl] xref: TO_GIT:390 is_a: TO:0000079 ! flower bract morphology trait intersection_of: PATO:0001241 ! physical object quality intersection_of: inheres_in PO:0009038 ! palea created_by: cooperl creation_date: 2016-03-17 [Typedef] id: evaluation_location name: evaluation location [Typedef] id: from_country name: from country [Typedef] id: has_dividend_entity name: has dividend entity [Typedef] id: has_dividend_quality name: has dividend quality [Typedef] id: has_divisor_entity name: has divisor entity [Typedef] id: has_divisor_quality name: has divisor quality [Typedef] id: has_part name: has part xref: BFO:0000051 [Typedef] id: has_phenotype_score name: has phenotype score [Typedef] id: has_phenotype_variable name: has phenotype variable [Typedef] id: has_ratio_quality name: has ratio quality [Typedef] id: inheres_in name: inheres in xref: RO:0000052 [Typedef] id: occurs_in name: occurs in xref: BFO:0000066 [Typedef] id: part_of name: part of xref: BFO:0000050 [Typedef] id: relative_to name: relative to