format-version: 1.2 date: 17:05:2010 23:35autogenerated-by: owl2obo.xsl (http://rnao.googlecode.com/svn/trunk/owl2obo.xsl) [Term] id: CHEBI:15901 name: 5,6-dihydrouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: CHEBI:16020 name: 1-methyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: CHEBI:16289 name: beta-D-galactosyl group is_a: CHEBI:24433 [Term] id: CHEBI:17368 name: hypoxanthine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000027 [Term] id: CHEBI:17596 name: inosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: CHEBI:17802 name: pseudouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:19062 name: 1-methylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: CHEBI:19065 name: 1-methylinosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: CHEBI:19068 name: 1-methylpseudouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:19227 name: 2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:19228 name: 2prime-O-methylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: CHEBI:19229 name: 2prime-O-methylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: CHEBI:19231 name: 2prime-O-methylpseudouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:19289 name: N2,N2-dimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: CHEBI:19688 name: 2-methyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: CHEBI:19702 name: N2-methylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: CHEBI:19780 name: 2-thiocytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: CHEBI:19928 name: 3-(3-amino-3-carboxypropyl)uridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20129 name: 3-methylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: CHEBI:20305 name: N4-acetylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: CHEBI:20480 name: 4-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20530 name: 5-(carboxyhydroxymethyl)uridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20555 name: 5-carboxymethylaminomethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20597 name: 5-methoxycarbonylmethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20598 name: 5-methoxycarbonylmethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20601 name: 5-methoxyuridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20602 name: 5-methyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:20607 name: 5-methylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: CHEBI:20794 name: 7-methylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: CHEBI:21891 name: N6-methyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: CHEBI:22453 name: glutamyl group is_a: CHEBI:24433 [Term] id: CHEBI:22832 name: 3-amino-3-carboxypropyl group is_a: CHEBI:24433 [Term] id: CHEBI:23004 name: carbamoyl group is_a: CHEBI:24433 [Term] id: CHEBI:23774 name: dihydrouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:24433 name: group is_a: RNAO:0000158 [Term] id: CHEBI:24712 name: hydroxymethyl group is_a: CHEBI:24433 [Term] id: CHEBI:25170 name: mannosyl group is_a: CHEBI:24433 [Term] id: CHEBI:25805 name: oxygen atom is_a: CHEBI:33250 [Term] id: CHEBI:25935 name: hydroperoxyl is_a: CHEBI:24433 [Term] id: CHEBI:26248 name: prenyl group is_a: CHEBI:24433 [Term] id: CHEBI:26565 name: ribosyl group is_a: CHEBI:24433 [Term] id: CHEBI:26861 name: tauryl group is_a: CHEBI:24433 [Term] id: CHEBI:27240 name: uridine 5-oxyacetic acid residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: CHEBI:27594 name: carbon atom is_a: CHEBI:33250 [Term] id: CHEBI:28284 name: N6,N6-dimethyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: CHEBI:28659 name: phosphorous atom is_a: CHEBI:33250 [Term] id: CHEBI:29235 name: hydrogen atom is_a: CHEBI:33250 [Term] id: CHEBI:29351 name: nitrogen atom is_a: CHEBI:33250 [Term] id: CHEBI:32875 name: methyl group is_a: CHEBI:24433 [Term] id: CHEBI:32958 name: phosphate group is_a: CHEBI:24433 [Term] id: CHEBI:33250 name: atom is_a: snap#MaterialEntity [Term] id: CHEBI:37900 name: threonyl group is_a: CHEBI:24433 [Term] id: CHEBI:37903 name: lysyl group is_a: CHEBI:24433 [Term] id: CHEBI:40574 name: acetyl group is_a: CHEBI:24433 [Term] id: CHEBI:41402 name: carboxymethyl group is_a: CHEBI:24433 [Term] id: CHEBI:42485 name: formyl group is_a: CHEBI:24433 [Term] id: CHEBI:43176 name: hydroxy group is_a: CHEBI:24433 [Term] id: CHEBI:44209 name: methylamino group is_a: CHEBI:24433 [Term] id: CHEBI:44520 name: methoxy group is_a: CHEBI:24433 [Term] id: CHEBI:46629 name: oxo group is_a: CHEBI:24433 [Term] id: CHEBI:46740 name: glycyl group is_a: CHEBI:24433 [Term] id: CHEBI:46882 name: amino group is_a: CHEBI:24433 [Term] id: CHEBI:46883 name: carboxy group is_a: CHEBI:24433 [Term] id: CHEBI:48819 name: cyano group is_a: CHEBI:24433 [Term] id: RNAO:0000000 name: ribonucleic acid is_a: RNAO:0000201 [Term] id: RNAO:0000001 name: base pair def: "A base pair consists of a pair of nucleotide residues that interact by nucleoside edge to nucleoside edge hydrogen bonds." [RNAO:ROC] is_a: snap#MaterialEntity [Term] id: RNAO:0000002 name: deoxyribose ring def: "A ribose ring that does not have a hydroxy group at the 2prime position." [RNAO:ROC] is_a: RNAO:0000147 [Term] id: RNAO:0000003 name: family 1 base pair def: "A family_1_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented \"cis\" relative to each other." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000004 name: family 2 base pair def: "A family_2_base_pair is an RNAO_base_pair in which the two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edges of each base and in which the glycosidic bonds of the two nucleotides are oriented \"trans\" relative to each other." [RNAO:ROC] is_a: RNAO:0000117 [Term] id: RNAO:0000005 name: family 3 base pair def: "A family_3_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented \"cis\" relative to each other." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000006 name: family 4 base pair def: "A family_4_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Hoogsteen edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented \"trans\" relative to each other." [RNAO:ROC] is_a: RNAO:0000117 [Term] id: RNAO:0000007 name: family 5 base pair def: "A family_5_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented \"cis\" relative to each other." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000008 name: family 6 base pair def: "A family_6_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Watson-Crick edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented \"trans\" relative to each other." [RNAO:ROC] is_a: RNAO:0000117 [Term] id: RNAO:0000009 name: family 7 base pair def: "A family_7_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented \"cis\" relative to each other." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000010 name: family 8 base pair def: "A family_8_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edges of each base and in which the glycosidic bonds of the two nucleotides are oriented \"trans\" relative to each other." [RNAO:ROC] is_a: RNAO:0000117 [Term] id: RNAO:0000011 name: family 9 base pair def: "A family_9_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented \"cis\" relative to each other." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000012 name: family 10 base pair def: "A family_10_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Hoogsteen edge of one base and the Sugar edge of the other base and in which the glycosidic bonds of the two nucleotides are oriented \"trans\" relative to each other." [RNAO:ROC] is_a: RNAO:0000117 [Term] id: RNAO:0000013 name: family 11 base pair def: "A family_11_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented \"cis\" relative to each other." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000014 name: family 12 base pair def: "A family_12_base_pair is an RNAO_base_pair in which two RNA nucleotides interact by edge-to-edge hydrogen-bonding between the Sugar edges of each base and in which the glycosidic bonds of the two nucleotides are oriented \"trans\" relative to each other." [RNAO:ROC] is_a: RNAO:0000117 [Term] id: RNAO:0000015 name: RNA suite is_a: RNAO:0000158 relationship: ro.owl#part_of RNAO:0000000 relationship: ro.owl#has_quality RNAO:0000200 [Term] id: RNAO:0000016 name: canonical RNA base pair def: "An RNAO_base_pair which has cis-Watson--Crick pairing and where the participating bases are AU, CG, GC or UA." [RNAO:ROC] is_a: RNAO:0000116 [Term] id: RNAO:0000017 name: nucleobase def: "A nucleobase is an N-heterocyclic group that forms part of a nucleoside residue." [RNAO:ROC] is_a: RNAO:0000158 relationship: ro.owl#part_of RNAO:0000186 [Term] id: RNAO:0000018 name: phosphate moiety def: "A phosphate group consists of a phosphorus atom doubly-bonded to two oxygen atoms and singly-bonded to two oxygen atoms, both of which have a free valence. Unlike the phosphate group in ChEBI (CHEBI:32958), the RNAO phosphate group has two free valences." [RNAO:ROC] is_a: RNAO:0000158 [Term] id: RNAO:0000019 name: ribonucleoside residue def: "A ribonucleoside consists of a nitrogen heterocycle (a nucleobase) covalently bonded to a ribose ring, with free valences at the 3prime oxgen and 5prime oxygen atoms on the ring." [RNAO:ROC] is_a: RNAO:0000186 relationship: RNAO:0000222 RNAO:0000021 [Term] id: RNAO:0000020 name: ribonucleotide residue def: "A ribonucleotide residue consists of a nitrogen heterocyclic group covalently bonded to the 1prime position of a ribose ring and a phosphate group covalently bonded the 5' oxygen of the ribose ring. There are free valances at the 3'-oxygen of the ribose and on the phosphorus atom of the phosphate group where the ribonucleotide is connected to two other ribonucleotides in the chain." [RNAO:ROC] is_a: RNAO:0000187 [Term] id: RNAO:0000021 name: ribose ring def: "A ribose ring is a furanose ring with free valences at the 4prime position (to bond to the nucleobase), and the 3prime and 5prime positions." [RNAO:ROC] is_a: RNAO:0000147 [Term] id: RNAO:0000022 name: 2prime hydroxyl group is_a: RNAO:0000158 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000023 name: purine nucleobase def: "A purine nucleobase is a heterocyclic group consisting of a five-membered aromatic ring ortho,para-fused to a six-membered aromatic ring and where the atoms at the 1-, 3-, 7- and 9- positions are nitrogen atoms." [RNAO:ROC] is_a: RNAO:0000017 [Term] id: RNAO:0000024 name: pyrimidine nucleobase def: "A pyrimidine nucleobase is a heterocyclic group consisting of a six-membered ring where the atoms at the 1- and 3-positions are nitrogen atoms." [RNAO:ROC] is_a: RNAO:0000017 [Term] id: RNAO:0000025 name: cytosine nucleobase def: "A cytosine nucleobase is a pyrimidine that contains a 4-amino group and a 2-oxo group and has a free valence at the 1-position." [RNAO:ROC] is_a: RNAO:0000024 [Term] id: RNAO:0000026 name: uracil nucleobase def: "A uracil nucleobase is a pyrimidine nucleobase that contains a 2-oxo group and a 4-oxo group and has a free valence at the 1-position." [RNAO:ROC] is_a: RNAO:0000024 [Term] id: RNAO:0000027 name: adenine nucleobase def: "An adenine nucleobase is a purine nucleobase that contains a 6-amino group and a free valence at the 9-position." [RNAO:ROC] is_a: RNAO:0000023 [Term] id: RNAO:0000028 name: guanine nucleobase def: "A guanine nucleobase is a purine nucleobase that contains a 2-amino group, a 6-oxo group and a free valence at the 9-position." [RNAO:ROC] is_a: RNAO:0000023 [Term] id: RNAO:0000029 name: 22 conformation is_a: RNAO:0000200 [Term] id: RNAO:0000030 name: 23 conformation is_a: RNAO:0000200 [Term] id: RNAO:0000031 name: 32 conformation is_a: RNAO:0000200 [Term] id: RNAO:0000032 name: purine ribonucleoside residue is_a: RNAO:0000019 [Term] id: RNAO:0000033 name: 33 conformation is_a: RNAO:0000200 [Term] id: RNAO:0000034 name: pyrimidine ribonucleoside residue is_a: RNAO:0000019 [Term] id: RNAO:0000035 name: cytidine residue is_a: RNAO:0000034 [Term] id: RNAO:0000036 name: uridine residue is_a: RNAO:0000034 [Term] id: RNAO:0000037 name: adenosine residue is_a: RNAO:0000032 relationship: ro.owl#has_part RNAO:0000027 [Term] id: RNAO:0000038 name: guanosine residue is_a: RNAO:0000032 relationship: ro.owl#has_part RNAO:0000028 [Term] id: RNAO:0000039 name: 1a conformation is_a: RNAO:0000033 [Term] id: RNAO:0000040 name: 1c conformation is_a: RNAO:0000033 [Term] id: RNAO:0000041 name: 1e conformation is_a: RNAO:0000033 [Term] id: RNAO:0000042 name: 1f conformation is_a: RNAO:0000033 [Term] id: RNAO:0000043 name: 1g conformation is_a: RNAO:0000033 [Term] id: RNAO:0000044 name: 1l conformation is_a: RNAO:0000033 [Term] id: RNAO:0000045 name: 1m conformation is_a: RNAO:0000033 [Term] id: RNAO:0000046 name: 3a conformation is_a: RNAO:0000033 [Term] id: RNAO:0000047 name: 3d conformation is_a: RNAO:0000033 [Term] id: RNAO:0000048 name: 5a conformation is_a: RNAO:0000033 [Term] id: RNAO:0000049 name: 5d conformation is_a: RNAO:0000033 [Term] id: RNAO:0000050 name: 5j conformation is_a: RNAO:0000033 [Term] id: RNAO:0000051 name: 5n conformation is_a: RNAO:0000033 [Term] id: RNAO:0000052 name: 7a conformation is_a: RNAO:0000033 [Term] id: RNAO:0000053 name: 7d conformation is_a: RNAO:0000033 [Term] id: RNAO:0000054 name: 9a conformation is_a: RNAO:0000033 [Term] id: RNAO:0000055 name: &a conformation is_a: RNAO:0000033 [Term] id: RNAO:0000056 name: 1[ conformation is_a: RNAO:0000031 [Term] id: RNAO:0000057 name: 1o conformation is_a: RNAO:0000031 [Term] id: RNAO:0000058 name: 1t conformation is_a: RNAO:0000031 [Term] id: RNAO:0000059 name: 3b conformation name: 1z conformation is_a: RNAO:0000031 [Term] id: RNAO:0000060 name: 5p conformation is_a: RNAO:0000031 [Term] id: RNAO:0000061 name: 5q conformation is_a: RNAO:0000031 [Term] id: RNAO:0000062 name: 5r conformation is_a: RNAO:0000031 [Term] id: RNAO:0000063 name: 5z conformation is_a: RNAO:0000031 [Term] id: RNAO:0000064 name: 7p conformation is_a: RNAO:0000031 [Term] id: RNAO:0000065 name: 7r conformation is_a: RNAO:0000031 [Term] id: RNAO:0000066 name: 1b conformation is_a: RNAO:0000031 [Term] id: RNAO:0000067 name: 0a conformation is_a: RNAO:0000030 [Term] id: RNAO:0000068 name: 0i conformation is_a: RNAO:0000030 [Term] id: RNAO:0000069 name: 0k conformation is_a: RNAO:0000030 [Term] id: RNAO:0000070 name: 2a conformation is_a: RNAO:0000030 [Term] id: RNAO:0000071 name: 2g conformation is_a: RNAO:0000030 [Term] id: RNAO:0000072 name: 2h conformation is_a: RNAO:0000030 [Term] id: RNAO:0000073 name: 4a conformation is_a: RNAO:0000030 [Term] id: RNAO:0000074 name: 4d conformation is_a: RNAO:0000030 [Term] id: RNAO:0000075 name: 4g conformation is_a: RNAO:0000030 [Term] id: RNAO:0000076 name: 4n conformation is_a: RNAO:0000030 [Term] id: RNAO:0000077 name: 6d conformation is_a: RNAO:0000030 [Term] id: RNAO:0000078 name: 6g conformation is_a: RNAO:0000030 [Term] id: RNAO:0000079 name: 8d conformation is_a: RNAO:0000030 [Term] id: RNAO:0000080 name: 6n conformation is_a: RNAO:0000030 [Term] id: RNAO:0000081 name: 6j conformation is_a: RNAO:0000030 [Term] id: RNAO:0000082 name: 0b conformation is_a: RNAO:0000029 [Term] id: RNAO:0000083 name: 2[ conformation is_a: RNAO:0000029 [Term] id: RNAO:0000084 name: 2o conformation is_a: RNAO:0000029 [Term] id: RNAO:0000085 name: 2u conformation is_a: RNAO:0000029 [Term] id: RNAO:0000086 name: 2z conformation is_a: RNAO:0000029 [Term] id: RNAO:0000087 name: 4b conformation is_a: RNAO:0000029 [Term] id: RNAO:0000088 name: 4p conformation is_a: RNAO:0000029 [Term] id: RNAO:0000089 name: 4s conformation is_a: RNAO:0000029 [Term] id: RNAO:0000090 name: 6p conformation is_a: RNAO:0000029 [Term] id: RNAO:0000091 name: nucleoside edge def: "A nucleoside edge is either a Watson-Crick edge or a Hoogsteen edge or a sugar edge." [RNAO:ROC] is_a: RNAO:0000196 [Term] id: RNAO:0000092 name: Watson-Crick edge def: "The Watson-Crick edge of a nucleobase is the preferred edge along which it undergoes hydrogen bonding with other nucleobases." [RNAO:ROC] is_a: RNAO:0000091 relationship: RNAO:0000350 RNAO:0000017 [Term] id: RNAO:0000093 name: Hoogsteen edge def: "The Hoogsteen edge of a nucleobase is the edge of the nucleobase which is not adjacent to the 2prime-hydroxyl group on the ribose ring." [RNAO:ROC] is_a: RNAO:0000091 relationship: RNAO:0000350 RNAO:0000017 [Term] id: RNAO:0000094 name: sugar edge def: "The sugar edge of a nucleoside consists of the edge of the nucleobase adjacent ot the 2prime-hydroxyl group on the ribose ring and the 2prime-hydroxyl group on the ribose ring." [RNAO:ROC] is_a: RNAO:0000091 relationship: RNAO:0000350 RNAO:0000019 [Term] id: RNAO:0000095 name: paired region def: "A collection of one or more adjacent nucleotide residues in which at least one residue is part of a base pair." [RNAO:ROC] is_a: RNAO:0000108 relationship: ro.owl#has_proper_part RNAO:0000001 [Term] id: RNAO:0000096 name: unpaired region def: "A collection of one or more nucleotides that are not involved in base pairing." [RNAO:ROC] is_a: RNAO:0000108 [Term] id: RNAO:0000097 name: unbroken stem def: "A paired region made up of two contiguous collections of nucleotides, in which each nucleotide forms a base pair." [RNAO:ROC] is_a: RNAO:0000095 [Term] id: RNAO:0000098 name: terminal loop def: "A contiguous sequence of nucleotide residues that directly links the two halves of an unbroken stem (but does not participate in the stem); this structure is also known as a \"hairpin loop\". Because a terminal loop may also participate in other inter-base interactions, (a) it is defined relative to a particular unbroken_stem, and (b) it is not implicitly defined as unpaired (or paired)." [RNAO:ROC] is_a: RNAO:0000108 [Term] id: RNAO:0000099 name: internal loop def: "A collection of nucleotide residues that link two given unbroken_stems." [RNAO:ROC] is_a: RNAO:0000108 [Term] id: RNAO:0000100 name: purine ribonucleotide is_a: RNAO:0000020 [Term] id: RNAO:0000101 name: pyrimidine ribonucleotide is_a: RNAO:0000020 [Term] id: RNAO:0000102 name: cytidylate residue is_a: RNAO:0000101 [Term] id: RNAO:0000103 name: uridylate residue is_a: RNAO:0000101 [Term] id: RNAO:0000104 name: adenylate residue is_a: RNAO:0000100 [Term] id: RNAO:0000105 name: guanylate residue is_a: RNAO:0000100 [Term] id: RNAO:0000106 name: stem junction def: "A collection of nucleotide residues consisting of all and only the nucleotide regions that link more than two unbroken stems such that each region links exactly two unbroken stems. This term is defined relative to the particular unbroken_stems involved and, again, does not imply anything about the pairedness/unpairedness of the bases in this region. The degree of a junction is a property (e.g. 3-junction, 4-junction), so the different degrees do not get separate entries in the ontology." [RNAO:ROC] is_a: RNAO:0000108 [Term] id: RNAO:0000107 name: strand end def: "A sequence_region bounded at one end by the 5prime or 3prime end of the molecule, and at the other by an unbroken_stem." [RNAO:ROC] is_a: RNAO:0000108 [Term] id: RNAO:0000108 name: collection of nucleotides residues def: "A collection of nucleotide residues is a part of a nucleic acid consisting of one or more nucleotides." [RNAO:ROC] is_a: RNAO:0000182 relationship: ro.owl#part_of RNAO:0000201 [Term] id: RNAO:0000109 name: 3prime end is_a: RNAO:0000219 [Term] id: RNAO:0000110 name: collection of material entities is_a: snap#MaterialEntity relationship: RNAO:0000354 snap#MaterialEntity [Term] id: RNAO:0000111 name: 5prime end is_a: RNAO:0000219 [Term] id: RNAO:0000112 name: conformation def: "The spatial arrangement of the atoms in a molecule or molecular part affording distinction between stereoisomers which can be interconverted by rotations about formally single bonds." [RNAO:ROC] is_a: snap#Quality [Term] id: RNAO:0000113 name: base pair orientation def: "A conformation that inheres in an RNA base pair. It may be cis- or trans- depending on the orientations of the ribose rings relative to the edge-edge interaction of the nucleobases." [RNAO:ROC] is_a: RNAO:0000112 [Term] id: RNAO:0000114 name: base pair cis-orientation def: "A base pair conformation where the ribose rings are on the same side of a plane drawn through the middle of the edge-edge hydrogen bonds." [RNAO:ROC] is_a: RNAO:0000113 [Term] id: RNAO:0000115 name: base pair trans-orientation def: "A base pair conformation where the ribose rings are on opposite sides of a plane drawn through the middle of the edge-edge hydrogen bonds." [RNAO:ROC] is_a: RNAO:0000113 [Term] id: RNAO:0000116 name: cis-oriented base pair is_a: RNAO:0000001 [Term] id: RNAO:0000117 name: trans-oriented base pair is_a: RNAO:0000001 [Term] id: RNAO:0000118 name: collection of atoms is_a: RNAO:0000110 [Term] id: RNAO:0000119 name: covalent boundary is_a: RNAO:0000196 [Term] id: RNAO:0000120 name: non-covalent boundary is_a: RNAO:0000196 [Term] id: RNAO:0000121 name: nucleoside conformation def: "A conformation that inheres in an nucleoside based on the rotation of the nucleobase about the glycosidic torsion angle χ with the furanose." [RNAO:ROC] is_a: RNAO:0000112 [Term] id: RNAO:0000122 name: syn nucleoside conformation def: "A syn nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented towards the ribose due to rotation about the glycosidic torsion angle χ. From χ = 0°, where the plane of the base is aligned with the O4’-C1’ bond in a direction towards the O4’ atom, the syn conformation covers the remaining rotations of ±90°: χ = [-90°, 90°]." [RNAO:ROC] is_a: RNAO:0000121 [Term] id: RNAO:0000123 name: anti nucleoside conformation def: "A anti nucleoside conformation is a nucleoside conformation characterized by the nucleobase being oriented away from the ribose due to rotation about the glycosidic torsion angle χ. From χ = 180°, where the plane of the base is aligned with the O4’-C1’ bond in a direction away from the O4’ atom, the anti conformation covers a rotations of ±90°: χ = [-180°, 90°]." [RNAO:ROC] is_a: RNAO:0000121 [Term] id: RNAO:0000124 name: envelope conformation def: "An envelope conformation is a furan ring conformation in which only one of the five fruan atoms (C1’, C2’, C3’, C4’ or O4’) is out of the plane formed by the four others." [RNAO:ROC] is_a: RNAO:0000126 [Term] id: RNAO:0000125 name: twist conformation def: "An envelope conformation is a furan ring conformation in which two atoms are in opposite sides of the plane formed by the remaining three." [RNAO:ROC] is_a: RNAO:0000126 [Term] id: RNAO:0000126 name: furan ring conformation def: "A furan ring conformation is a conformation that inheres in a furan ring and is characterized by the values of torsion angles: θ0-4." [RNAO:ROC] is_a: RNAO:0000112 [Term] id: RNAO:0000127 name: C2prime-endo pucker def: "C2prime-endo pucker (2E conformation) is an envelope conformation in which the C2prime atom is above the plane formed by the other 4 atoms." [RNAO:ROC] is_a: RNAO:0000124 [Term] id: RNAO:0000128 name: C3prime-endo pucker def: "C3prime-endo pucker (An 3E conformation) is an envelope conformation in which the C3prime atom is above the plane formed by the other 4 atoms." [RNAO:ROC] is_a: RNAO:0000124 [Term] id: RNAO:0000129 name: C4prime-exo pucker def: "C4prime-exo pucker (E4 conformation) is an envelope conformation in which the C4prime atom is below the plane formed by the other 4 atoms." [RNAO:ROC] is_a: RNAO:0000124 [Term] id: RNAO:0000130 name: C3prime-endo - C4prime -exo pucker def: "C3prime-endo - C4prime exo pucker (3E4 conformation) is a twist conformation in which the C3prime atom is above the plane and the C4prime atom is below the plane." [RNAO:ROC] is_a: RNAO:0000125 [Term] id: RNAO:0000131 name: C3prime-endo - C2prime -exo pucker def: "C3prime-endo - C2prime exo pucker (3E2 conformation) is a twist conformation in which the C3prime atom is above the plane and the C2prime atom is below the plane." [RNAO:ROC] is_a: RNAO:0000125 [Term] id: RNAO:0000132 name: base stack def: "A base stack consists of a pair of nucleotides that interact by London dispersion inter-molecular interactions between their nucleobases such that one base is stacked on top of the other." [RNAO:ROC] is_a: snap#MaterialEntity relationship: ro.owl#has_quality RNAO:0000135 [Term] id: RNAO:0000133 name: adjacent base stack def: "An adjacent base stack is a base stack between a pair of sequence-adjacent nucleotides." [RNAO:ROC] is_a: RNAO:0000132 relationship: ro.owl#has_quality RNAO:0000145 [Term] id: RNAO:0000134 name: non-adjacent base stack def: "A non-adjacent base stack is a base stack between a pair of non sequence-adjacent nucleotides." [RNAO:ROC] is_a: RNAO:0000132 relationship: ro.owl#has_quality RNAO:0000146 [Term] id: RNAO:0000135 name: base stack orientation def: "A base stack orientation is a conformation that inheres in a base stack by virtue of the orientation of the nucleobases relative to i) the alignment of base normals and ii) their sequence adjacency." [RNAO:ROC] is_a: RNAO:0000112 [Term] id: RNAO:0000136 name: #a conformation is_a: RNAO:0000030 [Term] id: RNAO:0000137 name: backbone is_a: RNAO:0000158 [Term] id: RNAO:0000138 name: base stack straight orientation def: "An base stack straight orientation is a base stack orientation in which the normals of both bases are aligned in the same direction." [RNAO:ROC] is_a: RNAO:0000140 [Term] id: RNAO:0000139 name: base stack reverse orientation def: "A base stack reverse orientation is a base stack orientation in which the normals of both bases are aligned in the opposite directions." [RNAO:ROC] is_a: RNAO:0000140 [Term] id: RNAO:0000140 name: base stack base-normal orientation def: "A base stack base-normal orientation is a base stack orientation that depends on the relative orientation of the base normals." [RNAO:ROC] is_a: RNAO:0000135 [Term] id: RNAO:0000141 name: molecule is_a: snap#MaterialEntity [Term] id: RNAO:0000142 name: base stack above orientation def: "A base stack above orientation is a base stack orientation in which the second base (B) is in the same direction as the normal to the first base (A)." [RNAO:ROC] is_a: RNAO:0000140 [Term] id: RNAO:0000143 name: base stack below orientation def: "A base stack below orientation is a base stack orientation in which the normal of the second base (B) is directed towards the first base (A)." [RNAO:ROC] is_a: RNAO:0000140 [Term] id: RNAO:0000144 name: base stack sequence adjacency def: "A base stack sequence adjacency is a base stack orientation that depends on whether the stacked nucleobases are part of nucleotides that are sequence adjacent or not." [RNAO:ROC] is_a: RNAO:0000135 [Term] id: RNAO:0000145 name: base stack adjacent base orientation def: "A base stack adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are sequence adjacent." [RNAO:ROC] is_a: RNAO:0000144 [Term] id: RNAO:0000146 name: base stack non-adjacent base orientation def: "A base stack non-adjacent orientation is a base stack orientation in which the stacked nucleobases are part of nucleotides that are not sequence adjacent." [RNAO:ROC] is_a: RNAO:0000144 [Term] id: RNAO:0000147 name: furanose ring def: "A furanose ring is a ring that consists of four carbon and one oxygen atom and has free valences at each carbon position." [RNAO:ROC] is_a: RNAO:0000158 [Term] id: RNAO:0000148 name: upward base stack def: "An upward base stack is a base stack that exhibits both an straight orientation and an above orientation." [RNAO:ROC] is_a: RNAO:0000132 relationship: ro.owl#has_quality RNAO:0000142 relationship: ro.owl#has_quality RNAO:0000138 [Term] id: RNAO:0000149 name: downward base stack def: "A downward base stack is a base stack that exhibits both an straight orientation and a below orientation." [RNAO:ROC] is_a: RNAO:0000132 relationship: ro.owl#has_quality RNAO:0000143 relationship: ro.owl#has_quality RNAO:0000138 [Term] id: RNAO:0000150 name: inward base stack def: "An inward base stack is a base stack that exhibits both a reverse orientation and an above orientation." [RNAO:ROC] is_a: RNAO:0000132 relationship: ro.owl#has_quality RNAO:0000138 relationship: ro.owl#has_quality RNAO:0000142 [Term] id: RNAO:0000151 name: outward base stack def: "An outward base stack is a base stack that exhibits both a reverse orientation and a below orientation." [RNAO:ROC] is_a: RNAO:0000132 relationship: ro.owl#has_quality RNAO:0000138 relationship: ro.owl#has_quality RNAO:0000142 [Term] id: RNAO:0000152 name: purine Hoogsteen edge [Term] id: RNAO:0000153 name: pyrimidine Hoogsteen edge [Term] id: RNAO:0000154 name: purine Watson-Crick edge [Term] id: RNAO:0000155 name: pyrimidine Watson-Crick edge [Term] id: RNAO:0000156 name: purine sugar edge is_a: RNAO:0000094 [Term] id: RNAO:0000157 name: pyrimidine sugar edge is_a: RNAO:0000094 [Term] id: RNAO:0000158 name: submolecule def: "a submolecule is a part of a molecule that consists of covalently bonded sum of a collection of atoms." [RNAO:ROC] is_a: RNAO:0000181 relationship: ro.owl#part_of RNAO:0000141 [Term] id: RNAO:0000159 name: pyrimidine O4 atom is_a: RNAO:0000522 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000160 name: purine C2 atom is_a: RNAO:0000511 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000161 name: pyrimidine N4 atom is_a: RNAO:0000524 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000162 name: purine N1 atom is_a: RNAO:0000523 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000163 name: purine N6 atom is_a: RNAO:0000523 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000164 name: pyrimidine O2 atom is_a: RNAO:0000522 [Term] id: RNAO:0000165 name: pyrimidine N3 atom is_a: RNAO:0000524 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000166 name: purine N3 atom is_a: RNAO:0000523 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000167 name: ribose O2prime atom is_a: RNAO:0000521 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000168 name: RNA backbone is_a: RNAO:0000137 relationship: ro.owl#part_of RNAO:0000000 [Term] id: RNAO:0000169 name: purine H2 atom is_a: RNAO:0000518 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000170 name: pyrimidine H3 atom is_a: RNAO:0000519 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000171 name: purine H8 atom is_a: RNAO:0000518 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000172 name: purine C8 atom is_a: RNAO:0000511 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000173 name: purine N7 atom is_a: RNAO:0000523 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000174 name: purine H62 atom is_a: RNAO:0000518 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000175 name: purine O6 atom is_a: CHEBI:25805 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000176 name: pyrimidine H5 atom is_a: RNAO:0000519 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000177 name: pyrimidine C5 atom is_a: RNAO:0000514 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000178 name: pyrimidine C4 atom is_a: RNAO:0000514 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000179 name: pyrimidine C6 atom is_a: RNAO:0000514 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000180 name: purine H61 atom is_a: RNAO:0000518 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000181 name: part of molecule def: "a part of molecule is some part of a molecule." [RNAO:ROC] is_a: snap#MaterialEntity [Term] id: RNAO:0000182 name: collection of biopolymer residues is_a: RNAO:0000110 [Term] id: RNAO:0000183 name: nucleobase face is_a: RNAO:0000196 [Term] id: RNAO:0000184 name: 5prime face is_a: RNAO:0000183 [Term] id: RNAO:0000185 name: 3prime face is_a: RNAO:0000183 [Term] id: RNAO:0000186 name: nucleoside residue is_a: RNAO:0000158 relationship: ro.owl#has_part RNAO:0000017 relationship: ro.owl#has_part RNAO:0000147 [Term] id: RNAO:0000187 name: nucleotide residue is_a: RNAO:0000158 relationship: ro.owl#has_part RNAO:0000186 [Term] id: RNAO:0000188 name: mereologically maximal object is_a: snap#MaterialEntity [Term] id: RNAO:0000189 name: linear RNA backbone is_a: RNAO:0000168 [Term] id: RNAO:0000190 name: mereological sum of collection is_a: snap#MaterialEntity [Term] id: RNAO:0000196 name: boundary def: "A boundary is a region at which connections can be formed." [RNAO:ROC] is_a: snap#DependentContinuant relationship: RNAO:0000350 snap#MaterialEntity [Term] id: RNAO:0000200 name: backbone conformation is_a: RNAO:0000112 [Term] id: RNAO:0000201 name: nucleic acid is_a: RNAO:0000141 [Term] id: RNAO:0000203 name: external boundary is_a: RNAO:0000196 [Term] id: RNAO:0000216 name: ribose O3prime atom is_a: RNAO:0000521 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000217 name: ribose C3prime atom is_a: RNAO:0000512 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000219 name: terminal boundary of linear biopolymer is_a: RNAO:0000196 [Term] id: RNAO:0000400 name: uracil O4 atom is_a: RNAO:0000159 relationship: ro.owl#part_of RNAO:0000503 relationship: ro.owl#part_of RNAO:0000475 relationship: ro.owl#part_of RNAO:0000026 [Term] id: RNAO:0000401 name: cytosine O2 atom is_a: RNAO:0000164 relationship: ro.owl#part_of RNAO:0000025 relationship: ro.owl#part_of RNAO:0000506 relationship: ro.owl#part_of RNAO:0000474 [Term] id: RNAO:0000402 name: uracil O2 atom is_a: RNAO:0000164 relationship: ro.owl#part_of RNAO:0000475 relationship: ro.owl#part_of RNAO:0000507 relationship: ro.owl#part_of RNAO:0000026 [Term] id: RNAO:0000403 name: guanine O6 atom is_a: RNAO:0000175 relationship: ro.owl#part_of RNAO:0000028 relationship: ro.owl#part_of RNAO:0000473 relationship: ro.owl#part_of RNAO:0000501 [Term] id: RNAO:0000404 name: adenine C2 atom is_a: RNAO:0000160 relationship: ro.owl#part_of RNAO:0000504 relationship: ro.owl#part_of RNAO:0000472 relationship: ro.owl#part_of RNAO:0000027 [Term] id: RNAO:0000406 name: adenine C8 atom is_a: RNAO:0000172 relationship: ro.owl#part_of RNAO:0000027 relationship: ro.owl#part_of RNAO:0000500 [Term] id: RNAO:0000407 name: guanine C8 atom is_a: RNAO:0000172 relationship: ro.owl#part_of RNAO:0000028 relationship: ro.owl#part_of RNAO:0000501 [Term] id: RNAO:0000408 name: cytosine C5 atom is_a: RNAO:0000177 relationship: ro.owl#part_of RNAO:0000502 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000409 name: uracil C5 atom is_a: RNAO:0000177 relationship: ro.owl#part_of RNAO:0000026 relationship: ro.owl#part_of RNAO:0000503 [Term] id: RNAO:0000410 name: cytosine C4 atom is_a: RNAO:0000178 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000411 name: uracil C4 atom is_a: RNAO:0000178 relationship: ro.owl#part_of RNAO:0000026 [Term] id: RNAO:0000412 name: uracil C6 atom is_a: RNAO:0000179 relationship: ro.owl#part_of RNAO:0000503 relationship: ro.owl#part_of RNAO:0000026 [Term] id: RNAO:0000413 name: cytosine C6 atom is_a: RNAO:0000179 relationship: ro.owl#part_of RNAO:0000502 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000414 name: adenine H2 atom is_a: RNAO:0000169 relationship: ro.owl#part_of RNAO:0000472 relationship: ro.owl#part_of RNAO:0000027 relationship: ro.owl#part_of RNAO:0000504 [Term] id: RNAO:0000415 name: cytosine N4 atom is_a: RNAO:0000161 relationship: ro.owl#part_of RNAO:0000025 relationship: ro.owl#part_of RNAO:0000474 relationship: ro.owl#part_of RNAO:0000502 [Term] id: RNAO:0000416 name: adenine N1 atom is_a: RNAO:0000162 relationship: ro.owl#part_of RNAO:0000472 relationship: ro.owl#part_of RNAO:0000027 [Term] id: RNAO:0000417 name: adenine N6 atom is_a: RNAO:0000163 relationship: ro.owl#part_of RNAO:0000472 relationship: ro.owl#part_of RNAO:0000027 relationship: ro.owl#part_of RNAO:0000500 [Term] id: RNAO:0000418 name: cytosine N3 atom is_a: RNAO:0000165 relationship: ro.owl#part_of RNAO:0000474 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000419 name: uracil N3 atom is_a: RNAO:0000165 relationship: ro.owl#part_of RNAO:0000026 relationship: ro.owl#part_of RNAO:0000475 [Term] id: RNAO:0000420 name: adenine N3 atom is_a: RNAO:0000166 relationship: ro.owl#part_of RNAO:0000027 relationship: ro.owl#part_of RNAO:0000504 [Term] id: RNAO:0000422 name: guanine C2 atom is_a: RNAO:0000160 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000423 name: uracil H3 atom is_a: RNAO:0000170 relationship: ro.owl#part_of RNAO:0000026 relationship: ro.owl#part_of RNAO:0000475 [Term] id: RNAO:0000424 name: guanine H8 atom is_a: RNAO:0000171 relationship: ro.owl#part_of RNAO:0000501 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000425 name: adenine H8 atom is_a: RNAO:0000171 relationship: ro.owl#part_of RNAO:0000500 relationship: ro.owl#part_of RNAO:0000027 [Term] id: RNAO:0000426 name: adenine H62 atom is_a: RNAO:0000174 relationship: ro.owl#part_of RNAO:0000027 relationship: ro.owl#part_of RNAO:0000500 [Term] id: RNAO:0000427 name: cytosine H5 atom is_a: RNAO:0000176 relationship: ro.owl#part_of RNAO:0000502 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000428 name: uracil H5 atom is_a: RNAO:0000176 relationship: ro.owl#part_of RNAO:0000026 relationship: ro.owl#part_of RNAO:0000503 [Term] id: RNAO:0000430 name: adenine H61 atom is_a: RNAO:0000180 relationship: ro.owl#part_of RNAO:0000027 [Term] id: RNAO:0000431 name: guanine N1 atom is_a: RNAO:0000162 relationship: ro.owl#part_of RNAO:0000473 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000432 name: guanine N3 atom is_a: RNAO:0000166 relationship: ro.owl#part_of RNAO:0000505 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000433 name: adenine N7 atom is_a: RNAO:0000173 relationship: ro.owl#part_of RNAO:0000027 relationship: ro.owl#part_of RNAO:0000500 [Term] id: RNAO:0000434 name: guanine N7 atom is_a: RNAO:0000173 relationship: ro.owl#part_of RNAO:0000028 relationship: ro.owl#part_of RNAO:0000501 [Term] id: RNAO:0000437 name: pyrimidine H6 atom is_a: RNAO:0000519 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000438 name: cytosine H6 atom is_a: RNAO:0000437 relationship: ro.owl#part_of RNAO:0000502 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000439 name: uracil H6 atom is_a: RNAO:0000437 relationship: ro.owl#part_of RNAO:0000026 relationship: ro.owl#part_of RNAO:0000503 [Term] id: RNAO:0000440 name: purine N9 atom is_a: RNAO:0000523 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000441 name: adenine N9 atom is_a: RNAO:0000440 relationship: ro.owl#part_of RNAO:0000027 [Term] id: RNAO:0000442 name: guanine N9 atom is_a: RNAO:0000440 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000443 name: purine N2 atom is_a: RNAO:0000523 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000444 name: guanine N2 atom is_a: RNAO:0000443 relationship: ro.owl#part_of RNAO:0000028 relationship: ro.owl#part_of RNAO:0000473 relationship: ro.owl#part_of RNAO:0000505 [Term] id: RNAO:0000445 name: purine H21 atom is_a: RNAO:0000518 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000446 name: purine H22 atom is_a: RNAO:0000518 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000447 name: guanine H22 atom is_a: RNAO:0000446 relationship: ro.owl#part_of RNAO:0000505 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000448 name: guanine H21 atom is_a: RNAO:0000445 relationship: ro.owl#part_of RNAO:0000028 relationship: ro.owl#part_of RNAO:0000473 [Term] id: RNAO:0000449 name: pyrimidine H41 atom is_a: RNAO:0000519 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000450 name: pyrimidine H42 atom is_a: RNAO:0000519 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000451 name: cytosine H42 atom is_a: RNAO:0000450 relationship: ro.owl#part_of RNAO:0000502 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000452 name: cytosine H41 atom is_a: RNAO:0000449 relationship: ro.owl#part_of RNAO:0000474 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000453 name: ribose O4prime atom is_a: RNAO:0000521 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000454 name: ribose O5prime atom is_a: RNAO:0000521 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000455 name: ribose C1prime atom is_a: RNAO:0000512 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000456 name: ribose C2prime atom is_a: RNAO:0000512 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000457 name: ribose C4prime atom is_a: RNAO:0000512 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000458 name: ribose C5prime atom is_a: RNAO:0000512 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000460 name: ribose H1prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000461 name: ribose H2prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000462 name: ribose H3prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000463 name: ribose H4prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000464 name: ribose H51prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000465 name: ribose H52prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000466 name: ribose OH2prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000467 name: ribose OH3prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000468 name: ribose OH5prime atom is_a: RNAO:0000525 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000469 name: phosphate moiety O1P atom is_a: RNAO:0000520 relationship: ro.owl#part_of RNAO:0000018 [Term] id: RNAO:0000470 name: phosphate moiety O2P atom is_a: RNAO:0000520 relationship: ro.owl#part_of RNAO:0000018 [Term] id: RNAO:0000471 name: phosphate moiety phosphate atom is_a: CHEBI:28659 relationship: ro.owl#part_of RNAO:0000018 [Term] id: RNAO:0000472 name: adenosine Watson-Crick edge is_a: RNAO:0000154 [Term] id: RNAO:0000473 name: guanosine Watson-Crick edge is_a: RNAO:0000154 [Term] id: RNAO:0000474 name: cytidine Watson-Crick edge is_a: RNAO:0000155 relationship: ro.owl#part_of RNAO:0000025 [Term] id: RNAO:0000475 name: uridine Watson-Crick edge is_a: RNAO:0000155 relationship: ro.owl#part_of RNAO:0000026 [Term] id: RNAO:0000476 name: adenine nucleobase functional derivative is_a: RNAO:1000014 [Term] id: RNAO:0000477 name: guanine nucleobase functional derivative is_a: RNAO:1000014 [Term] id: RNAO:0000478 name: cytosine nucleobase functional derivative is_a: RNAO:1000015 [Term] id: RNAO:0000479 name: uracil nucleobase functional derivative is_a: RNAO:1000015 [Term] id: RNAO:0000500 name: adenosine Hoogsteen edge is_a: RNAO:0000152 [Term] id: RNAO:0000501 name: guanosine Hoogsteen edge is_a: RNAO:0000152 [Term] id: RNAO:0000502 name: cytidine Hoogsteen edge is_a: RNAO:0000153 [Term] id: RNAO:0000503 name: uridine Hoogsteen edge is_a: RNAO:0000153 [Term] id: RNAO:0000504 name: adenosine sugar edge is_a: RNAO:0000156 [Term] id: RNAO:0000505 name: guanosine sugar edge is_a: RNAO:0000156 [Term] id: RNAO:0000506 name: cytidine sugar edge is_a: RNAO:0000157 [Term] id: RNAO:0000507 name: uridine sugar edge is_a: RNAO:0000157 [Term] id: RNAO:0000508 name: purine C6 atom is_a: RNAO:0000511 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000509 name: guanine C6 atom is_a: RNAO:0000508 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000510 name: adenine C6 atom is_a: RNAO:0000508 relationship: ro.owl#part_of RNAO:0000027 [Term] id: RNAO:0000511 name: purine carbon atom is_a: CHEBI:27594 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000512 name: ribose carbon atom is_a: CHEBI:27594 relationship: ro.owl#part_of RNAO:0000021 [Term] id: RNAO:0000513 name: imidazopurine carbon atom is_a: CHEBI:27594 [Term] id: RNAO:0000514 name: pyrimidine carbon atom is_a: CHEBI:27594 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000515 name: pyrimidine C2 atom is_a: RNAO:0000514 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000516 name: cytosine C2 atom is_a: RNAO:0000515 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000517 name: uracil C2 atom is_a: RNAO:0000515 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000518 name: purine hydrogen atom is_a: CHEBI:29235 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000519 name: pyrimidine hydrogen atom is_a: CHEBI:29235 [Term] id: RNAO:0000520 name: phosphate moiety oxygen atom is_a: CHEBI:25805 relationship: ro.owl#part_of RNAO:0000018 [Term] id: RNAO:0000521 name: ribose oxygen atom is_a: CHEBI:25805 [Term] id: RNAO:0000522 name: pyrimidine oxygen atom is_a: CHEBI:25805 [Term] id: RNAO:0000523 name: purine nitrogen atom is_a: CHEBI:29351 relationship: ro.owl#part_of RNAO:0000023 [Term] id: RNAO:0000524 name: pyrimidine nitrogen atom is_a: CHEBI:29351 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000525 name: ribose hydrogen atom is_a: CHEBI:29235 [Term] id: RNAO:0000526 name: purine H1 atom is_a: RNAO:0000518 [Term] id: RNAO:0000527 name: guanine H1 atom is_a: RNAO:0000526 relationship: ro.owl#part_of RNAO:0000473 relationship: ro.owl#part_of RNAO:0000028 [Term] id: RNAO:0000528 name: cytidine ribose O 2prime atom is_a: RNAO:0000167 relationship: ro.owl#part_of RNAO:0000035 relationship: ro.owl#part_of RNAO:0000506 [Term] id: RNAO:0000529 name: uridine ribose O 2prime atom is_a: RNAO:0000167 relationship: ro.owl#part_of RNAO:0000507 relationship: ro.owl#part_of RNAO:0000036 [Term] id: RNAO:0000530 name: pyrimidine N1 atom is_a: RNAO:0000524 relationship: ro.owl#part_of RNAO:0000024 [Term] id: RNAO:0000531 name: adenosine ribonucleoside residue functional derivative is_a: RNAO:1000016 [Term] id: RNAO:0000532 name: guanosine ribonucleoside residue functional derivative is_a: RNAO:1000016 [Term] id: RNAO:0000533 name: cytidine ribonucleoside residue functional derivative is_a: RNAO:1000017 [Term] id: RNAO:0000534 name: uridine ribonucleoside residue functional derivative is_a: RNAO:1000017 [Term] id: RNAO:0000535 name: adenylate residue functional derivative is_a: RNAO:1000018 [Term] id: RNAO:0000536 name: guanylate residue functional derivative is_a: RNAO:1000018 [Term] id: RNAO:0000537 name: cytidylate residue functional derivative is_a: RNAO:1000019 [Term] id: RNAO:0000538 name: uridylate residue functional derivative is_a: RNAO:1000019 [Term] id: RNAO:1000014 name: purine nucleobase functional derivative is_a: RNAO:0000023 [Term] id: RNAO:1000015 name: pyrimidine nucleobase functional derivative is_a: RNAO:0000024 [Term] id: RNAO:1000016 name: purine ribonucleoside residue functional derivative is_a: RNAO:0000032 [Term] id: RNAO:1000017 name: pyrimidine ribonucleoside residue functional derivative is_a: RNAO:0000034 [Term] id: RNAO:1000018 name: purine ribonucleotide functional derivative is_a: RNAO:0000100 [Term] id: RNAO:1000019 name: pyrimidine ribonucleotide functional derivative is_a: RNAO:0000101 [Term] id: RNAO:1000020 name: ribose ring functional derivative is_a: RNAO:0000021 [Term] id: RNAO:1000021 name: phosphate moiety functional derivative is_a: RNAO:0000018 [Term] id: RNAO:1000022 name: 5prime cap structure is_a: RNAO:0000158 relationship: RNAO:0000352 RNAO:0000111 [Term] id: RNAO:1000024 name: N6-methyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000030 name: 2prime-O-methylribose ring is_a: RNAO:1000020 relationship: has_functional_parent RNAO:0000021 [Term] id: RNAO:1000034 name: N6-methyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000035 name: inosylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000036 name: dihydrouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000037 name: 2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000038 name: 2prime-O-methyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000039 name: 2prime-O-methyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000040 name: 1-methyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000041 name: 1-methyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000042 name: 2-methyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000043 name: 2-methyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000044 name: N6,N6-dimethyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000045 name: N6,N6-dimethyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000047 name: 1,2prime-O-dimethyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000048 name: 1,2prime-O-methyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000050 name: N6,2prime-O-dimethyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000051 name: N6,2prime-O-dimethyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000053 name: N6,N6,2prime-O-trimethyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000054 name: N6,N6,2prime-O-trimethyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000055 name: 1-methylhypoxanthine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000056 name: 1-methylinosylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000057 name: 2prime-O-methylinosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000058 name: 2prime-O-methylinosylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000059 name: 1,2prime-O-dimethylinosylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000060 name: 1,2prime-O-dimethylinosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000061 name: 2prime-O-methylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000062 name: 3-methylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000064 name: 3-methylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000065 name: N4-methylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000066 name: N4-methylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000067 name: N4-methylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000068 name: 5-methylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000069 name: 5-methylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000070 name: N4,2prime-O-dimethylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000071 name: N4,2prime-O-dimethylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000072 name: N4,N4-dimethylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000073 name: N4,N4-dimethylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000074 name: N4,N4-dimethylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000075 name: N4,N4,2prime-O-trimethylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000076 name: N4,N4,2prime-O-trimethylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000077 name: 5,2prime-O-dimethylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000078 name: 5,2prime-O-dimethylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000080 name: 2prime-O-methylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000081 name: 1-methylguanine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000082 name: 1-methylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000084 name: N2-methylguanine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000085 name: N2-methylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000086 name: N2,N2-dimethylguanine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000087 name: N2,N2-dimethylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000088 name: N2,N2,2prime-O-trimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000089 name: N2,N2,2prime-O-trimethylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000090 name: 7-methylguanine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000091 name: 7-methylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000092 name: N2,7-dimethylguanine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000094 name: N2,7-dimethylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000095 name: N2,N2,7-trimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000096 name: N2,N2,7-trimethylguanine nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000097 name: N2,N2,7-trimethylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000098 name: 1,2prime-O-dimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000099 name: 1,2prime-O-methylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000100 name: N2,2prime-O-dimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000101 name: N2,2prime-O-methylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000102 name: 3-methyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000103 name: 3-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000104 name: 3-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000105 name: 5-methyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000106 name: 5-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000107 name: 5-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000108 name: 3,2prime-O-dimethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000109 name: 3,2prime-O-dimethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000110 name: 5,2prime-O-dimethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000111 name: 5,2prime-O-dimethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000112 name: 2-methylthio-N6-methyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000113 name: 2-methylthio-N6-methyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000114 name: 2-methylthio-N6-methyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000115 name: N6-acetyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000116 name: N6-acetyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000117 name: N6-acetyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000118 name: 2-thiocytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000120 name: 2-thiocytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000121 name: N4-acetylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000122 name: N4-acetylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000123 name: N4-acetyl-2prime-O-methylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000124 name: N4-acetyl-2prime-O-methylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000125 name: 5-formylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000126 name: 5-formylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000127 name: 5-formylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000128 name: 5-formyl-2prime-O-methylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000129 name: 5-formyl-2prime-O-methylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000130 name: 2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000131 name: 2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000132 name: 2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000133 name: 4-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000135 name: 4-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000136 name: 2-selenouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000137 name: 2-selenouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000138 name: 2-selenouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000139 name: 2-thio-2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000140 name: 2-thio-2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000141 name: 5-methyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000142 name: 5-methyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000143 name: 5-formyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000144 name: 5-formyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000145 name: 5-formyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000146 name: 5-formyl-2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000147 name: 5-formyl-2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000148 name: 5-formyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000149 name: 5-formyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000150 name: 5-formyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000151 name: 5-formyl-2-selenouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000152 name: 5-formyl-2-selenouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000153 name: 5-formyl-2-selenouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000154 name: 5-methyl-5,6-dihydrouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000155 name: 5-methyldihydrouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000156 name: 5-methyldihydrouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000157 name: 5-hydroxymethylcytosine nucleobase is_a: RNAO:0000478 relationship: has_functional_parent RNAO:0000025 [Term] id: RNAO:1000158 name: 5-hydroxymethylcytidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000159 name: 5-hydroxymethylcytidylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000160 name: 5-hydroxyuracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000161 name: 5-hydroxyuridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000162 name: 5-hydroxyuridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000163 name: 5-methoxyuracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000165 name: 5-methoxyuridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000166 name: 5-carboxymethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000167 name: 5-carboxymethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000168 name: 5-carboxymethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000169 name: 5-carboxymethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000170 name: 5-carboxymethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000171 name: 5-carboxymethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000172 name: 5-carboxymethylaminomethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000173 name: 5-carboxymethylaminomethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000174 name: 5-carboxymethylaminomethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000175 name: 5-carboxymethylaminomethyl-2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000176 name: 5-carboxymethylaminomethyl-2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000177 name: 5-carboxymethylaminomethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000178 name: 5-carboxymethylaminomethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000179 name: 5-carboxymethylaminomethyl-2-selenouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000180 name: 5-carboxymethylaminomethyl-2-selenouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000181 name: 5-carboxymethylaminomethyl-2-selenouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000182 name: 5-aminomethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000183 name: 5-aminomethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000184 name: 5-aminomethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000185 name: 5-methylaminomethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000186 name: 5-aminomethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000187 name: 5-aminomethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000188 name: 5-methylaminomethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000189 name: 5-aminomethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000190 name: 5-methylaminomethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000191 name: 5-methylaminomethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000192 name: 5-methylaminomethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000193 name: 5-methylaminomethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000195 name: 5-aminomethyl-2-selenouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000196 name: 5-aminomethyl-2-selenouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000197 name: 5-aminomethyl-2-selenouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000198 name: 5-methylaminomethyl-2-selenouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000199 name: 5-methylaminomethyl-2-selenouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000200 name: 5-methylaminomethyl-2-selenouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000201 name: 5-carbamoylmethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000202 name: 5-carbamoylmethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000203 name: 5-carbamoylmethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000204 name: 5-carbamoylmethyl-2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000205 name: 5-carbamoylmethyl-2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000206 name: N6-threonylcarbamoyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000207 name: N6-threonylcarbamoyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000208 name: N6-threonylcarbamoyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000209 name: N6-methyl-N6-threonylcarbamoyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000210 name: N6-methyl-N6-threonylcarbamoyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000211 name: N6-methyl-N6-threonylcarbamoyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000212 name: 2-methylthio-N6-threonylcarbamoyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000213 name: 2-methylthio-N6-threonylcarbamoyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000214 name: 2-methylthio-N6-threonylcarbamoyladenosylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000215 name: N6-glycinylcarbamoyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000216 name: N6-glycinylcarbamoyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000217 name: N6-glycinylcarbamoyladenosylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000219 name: pseudouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000220 name: 5-taurinomethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000221 name: 5-taurinomethyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000222 name: 5-taurinomethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000223 name: 5-taurinomethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000224 name: 5-taurinomethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000225 name: lysidinylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000226 name: 5-taurinomethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000227 name: lysidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000228 name: 2prime-O-(5-phosphoribosyl)ribose ring is_a: RNAO:1000020 [Term] id: RNAO:1000229 name: 2prime-O-ribosyladenylate phosphate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000230 name: 2prime-O-ribosyladenosine phosphate residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000231 name: 2prime-O-ribosylguanosine phosphate residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000232 name: 2prime-O-ribosylguanylate phosphate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000233 name: N6-isopentenyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000234 name: N6-isopentenyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000235 name: N6-isopentenyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000236 name: 2-methylthio-N6-isopentenyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000237 name: 2-methylthio-N6-isopentenyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000238 name: 2prime-O-methylpseudouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000239 name: 3-methylpseudouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000240 name: 3-methylpseudouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000241 name: 1-methyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000243 name: 1-methylpseudouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000244 name: 5-methoxycarbonylmethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000245 name: 5-methoxycarbonylmethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000246 name: 5-methoxycarbonylmethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000247 name: 5-methoxycarbonylmethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000248 name: 5-methoxycarbonylmethyl-2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000249 name: 5-methoxycarbonylmethyl-2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000250 name: 3-(3-amino-3-carboxypropyl)uridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000251 name: 3-(3-amino-3-carboxypropyl)methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000252 name: 3-(3-amino-3-carboxypropyl)methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000253 name: 1-methyl-3-(3-amino-3-carboxypropyl)uracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000254 name: 1-methyl-3-(3-amino-3-carboxypropyl)pseudouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000255 name: 1-methyl-3-(3-amino-3-carboxypropyl)pseudouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000256 name: 5-(carboxyhydroxymethyl)uracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000257 name: 5-(carboxyhydroxymethyl)uridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000258 name: uracil 5-oxyaceticacid nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000259 name: uridylate 5-oxyacetic acid residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000260 name: uracil 5-oxyaceticacid methyl ester nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000261 name: uridine 5-oxyacetic acid methyl ester residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000262 name: uridylate 5-oxyacetic acid methyl ester residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000263 name: 5-(carboxyhydroxymethyl)uracil methyl ester nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000264 name: 5-(carboxyhydroxymethyl)uridine methyl ester residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000265 name: 5-(carboxyhydroxymethyl)uridylate methyl ester residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000266 name: N6-(cis-hydroxyisopentenyl)adenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000267 name: N6-(cis-hydroxyisopentenyl)adenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000268 name: N6-(cis-hydroxyisopentenyl)adenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000269 name: 2-methylthio-N6-(cis-hydroxyisopentenyl)adenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000270 name: 2-methylthio-N6-(cis-hydroxyisopentenyl)adenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000271 name: 2-methylthio-N6-(cis-hydroxyisopentenyl)adenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000272 name: norvalyl group is_a: CHEBI:24433 [Term] id: RNAO:1000273 name: N6-hydroxynorvalylcarbamoyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000274 name: N6-hydroxynorvalylcarbamoyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000275 name: N6-hydroxynorvalylcarbamoyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000276 name: 2-methylthio-N6-hydroxynorvalylcarbamoyladenine nucleobase is_a: RNAO:0000476 relationship: has_functional_parent RNAO:0000027 [Term] id: RNAO:1000277 name: 2-methylthio-N6-hydroxynorvalylcarbamoyladenosine residue is_a: RNAO:0000531 relationship: has_functional_parent RNAO:0000037 [Term] id: RNAO:1000278 name: 2-methylthio-N6-hydroxynorvalylcarbamoyladenylate residue is_a: RNAO:0000535 relationship: has_functional_parent RNAO:0000104 [Term] id: RNAO:1000281 name: agmatinyl group is_a: CHEBI:24433 [Term] id: RNAO:1000282 name: agmatidinylate residue is_a: RNAO:0000537 relationship: has_functional_parent RNAO:0000102 [Term] id: RNAO:1000283 name: agmatidine residue is_a: RNAO:0000533 relationship: has_functional_parent RNAO:0000035 [Term] id: RNAO:1000284 name: N2,7,2prime-O-trimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000285 name: N2,7,2prime-O-trimethylguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000286 name: 5-isopentenylaminomethyluracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000287 name: 5-isopentenylaminomethyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000288 name: 5-isopentenylaminomethyl-2prime-O-methyluridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000289 name: 5-isopentenylaminomethyluridine residue is_a: RNAO:0000534 [Term] id: RNAO:1000290 name: 5-isopentenylaminomethyl-2prime-O-methyluridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000291 name: 5-isopentenylaminomethyl-2-thiouracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: RNAO:1000292 name: 5-isopentenylaminomethyl-2-thiouridine residue is_a: RNAO:0000534 relationship: has_functional_parent RNAO:0000036 [Term] id: RNAO:1000293 name: 5-isopentenylaminomethyl-2-thiouridylate residue is_a: RNAO:0000538 relationship: has_functional_parent RNAO:0000103 [Term] id: RNAO:1000294 name: wyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000295 name: wyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000296 name: methylwyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000297 name: imidazopurine C7 atom is_a: RNAO:0000513 [Term] id: RNAO:1000298 name: methylwyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000299 name: archaeosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000300 name: carboxamidine group is_a: CHEBI:24433 [Term] id: RNAO:1000301 name: 7-deazapurine C7 atom is_a: CHEBI:27594 [Term] id: RNAO:1000302 name: archaeosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000303 name: 7-cyano-7-deazaguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000304 name: 7-cyano-7-deazaguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000305 name: 7-aminomethyl-7-deazaguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000306 name: 7-aminomethyl-7-deazaguanylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000307 name: preQ1base nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000308 name: cyclopentenediolyl group is_a: CHEBI:24433 [Term] id: RNAO:1000309 name: Qbase nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000310 name: queuosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000311 name: queuosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000312 name: mannosyl-Qbase nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000313 name: mannosyl-queuosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000314 name: mannosyl-queuosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000315 name: galactosyl-Qbase nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000316 name: galactosyl-queuosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000317 name: galactosyl-queuosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000318 name: glutamyl-Qbase nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000319 name: gluQ residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000320 name: gluQylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000321 name: imidazopurine C6 atom is_a: RNAO:0000513 [Term] id: RNAO:1000322 name: imidazopurine N4 atom is_a: CHEBI:29351 [Term] id: RNAO:1000323 name: 4-demethylwyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000324 name: 4-demethylwyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000325 name: isowyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000326 name: isowyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000327 name: undermodified hydroxywybutosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000328 name: undermodified hydroxywybutosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000329 name: 10-glutamylwyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000330 name: 10-glutamylwyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000331 name: 10-glutamyl-4-demethylwyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000333 name: 10-glutamyl-4-demethylwyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000334 name: 10-glutamylmethylesterwyosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000335 name: 10-glutamylmethylesterwyosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000336 name: 2,3-epoxycyclopenta-(4,5-diol)-1-yl group is_a: CHEBI:24433 [Term] id: RNAO:1000337 name: epoxy-Qbase nucleobase is_a: RNAO:0000477 relationship: has_functional_parent RNAO:0000028 [Term] id: RNAO:1000338 name: epoxyqueuosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000339 name: epoxyqueuosinylate residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000350 name: 7-methylguanosine cap structure is_a: RNAO:1000022 [Term] id: RNAO:1000351 name: N2,N2,7-trimethylguanosine cap structure is_a: RNAO:1000022 [Term] id: RNAO:1000352 name: gamma-methylphosphate cap structure is_a: RNAO:1000022 [Term] id: RNAO:1000353 name: wybutosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000354 name: hydroxywybutosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000355 name: peroxywybutosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: RNAO:1000356 name: wybutosinyl residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000357 name: hydroxywybutosinyl residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:1000358 name: peroxywybutosinyl residue is_a: RNAO:0000536 relationship: has_functional_parent RNAO:0000105 [Term] id: RNAO:100249 name: 3-(3-amino-3-carboxypropyl)uracil nucleobase is_a: RNAO:0000479 relationship: has_functional_parent RNAO:0000026 [Term] id: CHEBI:26833 name: sulfur atom is_a: CHEBI:33250 [Term] id: CHEBI:27568 name: selenium atom is_a: CHEBI:33250 [Term] id: RNAO:1000093 name: N2,7-dimethylguanosine residue is_a: RNAO:0000532 relationship: has_functional_parent RNAO:0000038 [Term] id: snap#DependentContinuant [Term] id: snap#MaterialEntity [Term] id: snap#Quality [Typedef] id: ObjectProperty1243973897611439000 name: obsolete relation [Typedef] id: RNAO:0000191 name: linear RNA backbone of is_a: RNAO:0000220 inverse_of: RNAO:0000192 domain: RNAO:0000189 [Typedef] id: RNAO:0000192 name: has linear RNA backbone is_a: RNAO:0000221 [Typedef] id: RNAO:0000220 name: RNA backbone of is_a: RNAO:0000357 domain: RNAO:0000168 [Typedef] id: RNAO:0000221 name: has RNA backbone is_a: RNAO:0000358 inverse_of: RNAO:0000220 [Typedef] id: RNAO:0000222 name: has direct part is_a: ro.owl#has_proper_part inverse_of: RNAO:0000223 [Typedef] id: RNAO:0000223 name: direct part of is_a: ro.owl#proper_part_of [Typedef] id: RNAO:0000300 name: connected to is_symmetric: true is_transitive: true [Typedef] id: RNAO:0000301 name: covalently connected to (transitive) is_a: RNAO:0000300 is_transitive: true range: RNAO:0000158 domain: RNAO:0000158 [Typedef] id: RNAO:0000302 name: covalently bonded to (transitive) is_a: RNAO:0000301 is_transitive: true range: CHEBI:33250 domain: CHEBI:33250 [Typedef] id: RNAO:0000303 name: covalently bonded to is_a: RNAO:0000302 is_symmetric: true range: CHEBI:33250 domain: CHEBI:33250 [Typedef] id: RNAO:0000304 name: covalently connected to is_a: RNAO:0000301 is_symmetric: true [Typedef] id: RNAO:0000305 name: backbone connected to is_a: RNAO:0000304 range: RNAO:0000187 domain: RNAO:0000187 [Typedef] id: RNAO:0000306 name: covalently connected 5prime to 5prime is_a: RNAO:0000305 is_functional: true is_symmetric: true [Typedef] id: RNAO:0000307 name: covalently connected 5prime to 3prime is_a: RNAO:0000305 is_functional: true [Typedef] id: RNAO:0000308 name: covalently connected 5prime to 2prime is_a: RNAO:0000305 inverse_of: RNAO:0000312 is_functional: true [Typedef] id: RNAO:0000309 name: covalently connected 3prime to 5prime is_a: RNAO:0000305 inverse_of: RNAO:0000307 is_functional: true [Typedef] id: RNAO:0000310 name: covalently connected 3prime to 3prime is_a: RNAO:0000305 is_functional: true is_symmetric: true [Typedef] id: RNAO:0000311 name: covalently connected 3prime to 2prime is_a: RNAO:0000305 is_functional: true [Typedef] id: RNAO:0000312 name: covalently connected 2prime to 5prime is_a: RNAO:0000305 is_functional: true [Typedef] id: RNAO:0000313 name: covalently connected 2prime to 3prime is_a: RNAO:0000305 inverse_of: RNAO:0000311 is_functional: true [Typedef] id: RNAO:0000315 name: weakly interacting with (transitive) is_a: RNAO:0000300 is_symmetric: true is_transitive: true [Typedef] id: RNAO:0000316 name: weakly interacting with is_a: RNAO:0000315 is_symmetric: true [Typedef] id: RNAO:0000317 name: pairs with is_a: RNAO:0000316 domain: RNAO:0000020 [Typedef] id: RNAO:0000318 name: stacks with is_a: RNAO:0000316 is_symmetric: true range: RNAO:0000187 domain: RNAO:0000187 [Typedef] id: RNAO:0000319 name: stacks 5prime face to 5prime face is_a: RNAO:0000318 is_symmetric: true [Typedef] id: RNAO:0000320 name: stacks 5prime face to 3prime face is_a: RNAO:0000318 inverse_of: RNAO:0000321 [Typedef] id: RNAO:0000321 name: stacks 3prime face to 5prime face is_a: RNAO:0000318 [Typedef] id: RNAO:0000322 name: stacks 3prime face to 3prime face is_a: RNAO:0000318 is_symmetric: true [Typedef] id: RNAO:0000323 name: pairs with HH is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000324 name: pairs with CHH is_a: RNAO:0000323 is_functional: true [Typedef] id: RNAO:0000325 name: pairs with THH is_a: RNAO:0000323 is_functional: true [Typedef] id: RNAO:0000326 name: pairs with HS is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000327 name: pairs with CHS is_a: RNAO:0000326 is_functional: true [Typedef] id: RNAO:0000328 name: pairs with THS is_a: RNAO:0000326 is_functional: true [Typedef] id: RNAO:0000329 name: pairs with HW is_a: RNAO:0000317 inverse_of: RNAO:0000341 is_functional: true [Typedef] id: RNAO:0000330 name: pairs with CHW is_a: RNAO:0000329 is_functional: true [Typedef] id: RNAO:0000331 name: pairs with THW is_a: RNAO:0000329 is_functional: true [Typedef] id: RNAO:0000332 name: pairs with SH is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000333 name: pairs with CSH is_a: RNAO:0000332 inverse_of: RNAO:0000327 is_functional: true [Typedef] id: RNAO:0000334 name: pairs with TSH is_a: RNAO:0000332 inverse_of: RNAO:0000328 is_functional: true [Typedef] id: RNAO:0000335 name: pairs with SS is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000336 name: pairs with CSS is_a: RNAO:0000335 is_functional: true [Typedef] id: RNAO:0000337 name: pairs with TSS is_a: RNAO:0000335 is_functional: true [Typedef] id: RNAO:0000338 name: pairs with SW is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000339 name: pairs with CSW is_a: RNAO:0000338 is_functional: true [Typedef] id: RNAO:0000340 name: pairs with TSW is_a: RNAO:0000338 inverse_of: RNAO:0000346 is_functional: true [Typedef] id: RNAO:0000341 name: pairs with WH is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000342 name: pairs with CWH is_a: RNAO:0000341 inverse_of: RNAO:0000330 is_functional: true [Typedef] id: RNAO:0000343 name: pairs with TWH is_a: RNAO:0000341 inverse_of: RNAO:0000331 is_functional: true [Typedef] id: RNAO:0000344 name: pairs with WS is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000345 name: pairs with CWS is_a: RNAO:0000344 inverse_of: RNAO:0000339 is_functional: true [Typedef] id: RNAO:0000346 name: pairs with TWS is_a: RNAO:0000344 is_functional: true [Typedef] id: RNAO:0000347 name: pairs with WW is_a: RNAO:0000317 is_functional: true [Typedef] id: RNAO:0000348 name: pairs with CWW is_a: RNAO:0000347 is_functional: true is_symmetric: true [Typedef] id: RNAO:0000349 name: pairs with TWW is_a: RNAO:0000347 is_functional: true is_symmetric: true [Typedef] id: RNAO:0000350 name: boundary of [Typedef] id: RNAO:0000351 name: external boundary of is_a: RNAO:0000350 [Typedef] id: RNAO:0000352 name: has boundary inverse_of: RNAO:0000350 [Typedef] id: RNAO:0000353 name: has external boundary is_a: RNAO:0000352 inverse_of: RNAO:0000351 [Typedef] id: RNAO:0000354 name: has member is_a: ro.owl#has_part [Typedef] id: RNAO:0000355 name: member of is_a: ro.owl#part_of inverse_of: RNAO:0000354 [Typedef] id: RNAO:0000356 name: subcollection of is_a: ro.owl#part_of inverse_of: RNAO:0000359 [Typedef] id: RNAO:0000357 name: submolecule of is_a: ro.owl#part_of inverse_of: RNAO:0000358 domain: RNAO:0000181 [Typedef] id: RNAO:0000358 name: has submolecule is_a: ro.owl#has_part [Typedef] id: RNAO:0000359 name: has subcollection is_a: ro.owl#has_part [Typedef] id: RNAO:0000360 name: overlaps [Typedef] id: RNAO:0000361 name: covalently bonded sum of [Typedef] id: RNAO:0000362 name: same chain is_symmetric: true is_transitive: true [Typedef] id: RNAO:0000363 name: corresponds to is_symmetric: true is_transitive: true [Typedef] id: RNAO:0000364 name: corresponds to, nucleotide by nucleotide is_a: RNAO:0000363 is_symmetric: true [Typedef] id: RNAO:0000365 name: suite of is_a: RNAO:0000357 inverse_of: RNAO:0000366 [Typedef] id: RNAO:0000366 name: has suite is_a: RNAO:0000358 [Typedef] id: RNAO:0000367 name: has face is_a: RNAO:0000352 [Typedef] id: RNAO:0000368 name: face of is_a: RNAO:0000350 inverse_of: RNAO:0000367 is_functional: true range: RNAO:0000187 domain: RNAO:0000183 [Typedef] id: RNAO:0000369 name: 5prime face of is_a: RNAO:0000368 inverse_of: RNAO:0000371 is_functional: true domain: RNAO:0000184 [Typedef] id: RNAO:0000370 name: 3prime face of is_a: RNAO:0000368 inverse_of: RNAO:0000372 is_functional: true domain: RNAO:0000185 [Typedef] id: RNAO:0000371 name: has 5prime face is_a: RNAO:0000367 is_functional: true [Typedef] id: RNAO:0000372 name: has 3prime face is_a: RNAO:0000367 is_functional: true [Typedef] id: RNAO:0000373 name: has edge is_a: RNAO:0000352 [Typedef] id: RNAO:0000374 name: edge of is_a: RNAO:0000350 inverse_of: RNAO:0000373 is_functional: true range: RNAO:0000187 domain: RNAO:0000091 [Typedef] id: RNAO:0000375 name: has sugar edge is_a: RNAO:0000373 is_functional: true [Typedef] id: RNAO:0000376 name: has Hoogsteen edge is_a: RNAO:0000373 is_functional: true [Typedef] id: RNAO:0000377 name: has Watson-Crick edge is_a: RNAO:0000373 is_functional: true [Typedef] id: RNAO:0000378 name: is Hoogsteen edge of is_a: RNAO:0000374 inverse_of: RNAO:0000376 is_functional: true domain: RNAO:0000093 [Typedef] id: RNAO:0000379 name: is sugar edge of is_a: RNAO:0000374 inverse_of: RNAO:0000375 is_functional: true domain: RNAO:0000094 [Typedef] id: RNAO:0000380 name: is Watson-Crick edge of is_a: RNAO:0000374 inverse_of: RNAO:0000377 is_functional: true domain: RNAO:0000092 [Typedef] id: RNAO:0000381 name: sum of collection range: RNAO:0000110 domain: snap#MaterialEntity [Typedef] id: RNAO:0000382 name: covalently connected 5prime to 3prime (transitive) is_a: ObjectProperty1243973897611439000 is_transitive: true [Typedef] id: RNAO:0000383 name: covalently connected 3prime to 5prime (transitive) is_a: ObjectProperty1243973897611439000 is_transitive: true [Typedef] id: RNAO:0000459 name: hydrogen bonds with is_a: RNAO:0000316 is_symmetric: true range: CHEBI:33250 domain: CHEBI:33250 [Typedef] id: RNAO_isosteric_with is_a: ObjectProperty1243973897611439000 is_symmetric: true [Typedef] id: RNAO_near_isosteric_with is_a: ObjectProperty1243973897611439000 is_symmetric: true [Typedef] id: has_functional_parent name: has functional parent is_a: owl#topObjectProperty [Typedef] id: interacts_with_0BPh is_a: interacts_with_HPh domain: RNAO:0000020 [Typedef] id: interacts_with_1BPh is_a: ObjectProperty1243973897611439000 range: RNAO:0000018 domain: RNAO:0000105 [Typedef] id: interacts_with_2BPh is_a: ObjectProperty1243973897611439000 range: RNAO:0000018 domain: RNAO:0000104 [Typedef] id: interacts_with_3BPh is_a: interacts_with_WPh range: RNAO:0000018 domain: RNAO:0000105 [Typedef] id: interacts_with_4BPh is_a: interacts_with_WPh range: RNAO:0000018 domain: RNAO:0000105 [Typedef] id: interacts_with_5BPh is_a: interacts_with_WPh range: RNAO:0000018 [Typedef] id: interacts_with_6BPh is_a: interacts_with_WPh range: RNAO:0000018 [Typedef] id: interacts_with_7BPh is_a: interacts_with_HPh range: RNAO:0000018 [Typedef] id: interacts_with_8BPh is_a: interacts_with_HPh range: RNAO:0000018 domain: RNAO:0000102 [Typedef] id: interacts_with_9BPh is_a: interacts_with_HPh range: RNAO:0000018 domain: RNAO:0000101 [Typedef] id: interacts_with_HPh is_a: ObjectProperty1243973897611439000 range: RNAO:0000018 domain: RNAO:0000020 [Typedef] id: interacts_with_WPh is_a: ObjectProperty1243973897611439000 range: RNAO:0000018 domain: RNAO:0000020 [Typedef] id: ro.owl#has_part [Typedef] id: ro.owl#has_proper_part [Typedef] id: ro.owl#has_quality name: has quality [Typedef] id: ro.owl#part_of [Typedef] id: ro.owl#proper_part_of [Typedef] id: owl#topObjectProperty