498 2 0 http://purl.obolibrary.org/obo/SO_0001271 tmRNA_gene 'tmRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'tmRNA_encoding') 'tmRNA_gene' SubClassOf 'has_quality' some 'tmRNA_encoding' 'tmRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'tmRNA_encoding' 'tmRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'tmRNA_encoding') http://purl.obolibrary.org/obo/SO_0001272 tRNA_gene 'tRNA_gene' SubClassOf 'has_quality' some 'tRNA_encoding' 'tRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'tRNA_encoding') 'tRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'tRNA_encoding') 'tRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'tRNA_encoding' http://purl.obolibrary.org/obo/SO_0001267 snoRNA_gene 'snoRNA_gene' SubClassOf 'has_quality' some 'snoRNA_encoding' 'snoRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'snoRNA_encoding') 'snoRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'snoRNA_encoding' 'snoRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'snoRNA_encoding') http://purl.obolibrary.org/obo/SO_0001268 snRNA_gene 'snRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'ncRNA_gene') 'snRNA_gene' SubClassOf 'has_quality' some 'ncRNA_gene' 'snRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'ncRNA_gene' 'snRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'ncRNA_gene') http://purl.obolibrary.org/obo/SO_0001269 SRP_RNA_gene 'SRP_RNA_gene' SubClassOf 'has_quality' some 'SRP_RNA_encoding' 'SRP_RNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'SRP_RNA_encoding') 'SRP_RNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'SRP_RNA_encoding') 'SRP_RNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'SRP_RNA_encoding' http://purl.obolibrary.org/obo/SO_0001262 overlapping_EST_set 'overlapping_EST_set' SubClassOf 'has_part' some 'EST' 'overlapping_EST_set' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'EST' http://purl.obolibrary.org/obo/SO_0001264 gRNA_gene 'gRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'gRNA_encoding') 'gRNA_gene' SubClassOf 'has_quality' some 'gRNA_encoding' 'gRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'gRNA_encoding') 'gRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'gRNA_encoding' http://purl.obolibrary.org/obo/SO_0001265 miRNA_gene 'miRNA_gene' SubClassOf 'has_quality' some 'stRNA_encoding' 'miRNA_gene' SubClassOf 'has_quality' some 'miRNA_encoding' 'miRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'miRNA_encoding') and ('has_quality' some 'stRNA_encoding') 'miRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'miRNA_encoding') and (http://purl.obolibrary.org/obo/so#has_quality some 'stRNA_encoding') 'miRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'miRNA_encoding' 'miRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'stRNA_encoding' http://purl.obolibrary.org/obo/SO_0001266 scRNA_gene 'scRNA_gene' EquivalentTo 'ncRNA_gene' and ('has_quality' some 'scRNA_encoding') 'scRNA_gene' SubClassOf 'has_quality' some 'scRNA_encoding' 'scRNA_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'scRNA_encoding' 'scRNA_gene' EquivalentTo 'ncRNA_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'scRNA_encoding') http://purl.obolibrary.org/obo/SO_0000363 floxed_gene 'floxed_gene' SubClassOf 'has_quality' some 'floxed' 'floxed_gene' EquivalentTo 'transgene' and ('has_quality' some 'floxed') 'floxed_gene' EquivalentTo 'transgene' and (http://purl.obolibrary.org/obo/so#has_quality some 'floxed') 'floxed_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'floxed' http://purl.obolibrary.org/obo/SO_0001697 ChIP_seq_region 'ChIP_seq_region' SubClassOf 'contains' some 'protein_binding_site' 'ChIP_seq_region' SubClassOf http://purl.obolibrary.org/obo/so#contains some 'protein_binding_site' http://purl.obolibrary.org/obo/SO_0001217 protein_coding_gene 'protein_coding_gene' SubClassOf 'has_quality' some 'protein_coding' 'protein_coding_gene' EquivalentTo 'gene' and ('has_quality' some 'protein_coding') 'protein_coding_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'protein_coding') 'protein_coding_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'protein_coding' http://purl.obolibrary.org/obo/SO_0001218 transgenic_insertion 'transgenic_insertion' SubClassOf 'has_quality' some 'transgenic' 'transgenic_insertion' EquivalentTo 'insertion' and ('has_quality' some 'transgenic') 'transgenic_insertion' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'transgenic' 'transgenic_insertion' EquivalentTo 'insertion' and (http://purl.obolibrary.org/obo/so#has_quality some 'transgenic') http://purl.obolibrary.org/obo/SO_0001219 retrogene 'retrogene' EquivalentTo 'gene' and ('has_quality' some 'retrotransposed') 'retrogene' SubClassOf 'has_quality' some 'retrotransposed' 'retrogene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'retrotransposed' 'retrogene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'retrotransposed') http://purl.obolibrary.org/obo/SO_0001690 three_prime_restriction_enzyme_junction 'three_prime_restriction_enzyme_junction' SubClassOf 'part_of' some 'sticky_end_restriction_enzyme_cleavage_site' 'three_prime_restriction_enzyme_junction' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'sticky_end_restriction_enzyme_cleavage_site' http://purl.obolibrary.org/obo/SO_0000367 attI_site 'attI_site' SubClassOf 'part_of' some 'integron' 'attI_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'integron' http://purl.obolibrary.org/obo/SO_0001693 blunt_end_restriction_enzyme_cleavage_junction 'blunt_end_restriction_enzyme_cleavage_junction' SubClassOf 'part_of' some 'blunt_end_restriction_enzyme_cleavage_site' 'blunt_end_restriction_enzyme_cleavage_junction' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'blunt_end_restriction_enzyme_cleavage_site' http://purl.obolibrary.org/obo/SO_0001695 restriction_enzyme_single_strand_overhang 'restriction_enzyme_single_strand_overhang' SubClassOf 'part_of' some 'sticky_end_restriction_enzyme_cleavage_site' 'restriction_enzyme_single_strand_overhang' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'sticky_end_restriction_enzyme_cleavage_site' http://purl.obolibrary.org/obo/SO_0001689 five_prime_restriction_enzyme_junction 'five_prime_restriction_enzyme_junction' SubClassOf 'part_of' some 'sticky_end_restriction_enzyme_cleavage_site' 'five_prime_restriction_enzyme_junction' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'sticky_end_restriction_enzyme_cleavage_site' http://purl.obolibrary.org/obo/SO_0001674 minus_24_signal 'minus_24_signal' SubClassOf 'part_of' some 'bacterial_RNApol_promoter_sigma54' 'minus_24_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'bacterial_RNApol_promoter_sigma54' http://purl.obolibrary.org/obo/SO_0001675 A_box_type_1 'A_box_type_1' SubClassOf 'part_of' some 'RNApol_III_promoter_type_1' 'A_box_type_1' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_III_promoter_type_1' http://purl.obolibrary.org/obo/SO_0001676 A_box_type_2 'A_box_type_2' SubClassOf 'part_of' some 'RNApol_III_promoter_type_2' 'A_box_type_2' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_III_promoter_type_2' http://purl.obolibrary.org/obo/SO_0001677 intermediate_element 'intermediate_element' SubClassOf 'part_of' some 'RNApol_III_promoter_type_1' 'intermediate_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_III_promoter_type_1' http://purl.obolibrary.org/obo/SO_0000345 EST 'EST' SubClassOf 'derives_from' some 'mRNA' 'EST' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'mRNA' http://purl.obolibrary.org/obo/SO_0001673 minus_12_signal 'minus_12_signal' SubClassOf 'part_of' some 'bacterial_RNApol_promoter_sigma54' 'minus_12_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'bacterial_RNApol_promoter_sigma54' http://purl.obolibrary.org/obo/SO_0001663 BREd_motif 'BREd_motif' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'BREd_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0001664 DCE 'DCE' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'DCE' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0001665 DCE_SI 'DCE_SI' SubClassOf 'part_of' some 'DCE' 'DCE_SI' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'DCE' http://purl.obolibrary.org/obo/SO_0001666 DCE_SII 'DCE_SII' SubClassOf 'part_of' some 'DCE' 'DCE_SII' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'DCE' http://purl.obolibrary.org/obo/SO_0001667 DCE_SIII 'DCE_SIII' SubClassOf 'part_of' some 'DCE' 'DCE_SIII' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'DCE' http://purl.obolibrary.org/obo/SO_0000336 pseudogene 'pseudogene' SubClassOf 'non_functional_homolog_of' some 'gene' 'pseudogene' SubClassOf http://purl.obolibrary.org/obo/so#non_functional_homolog_of some 'gene' http://purl.obolibrary.org/obo/SO_0000335 mRNA_with_minus_2_frameshift 'mRNA_with_minus_2_frameshift' SubClassOf 'has_quality' some 'minus_2_frameshift' 'mRNA_with_minus_2_frameshift' EquivalentTo 'mRNA_with_frameshift' and ('has_quality' some 'minus_2_frameshift') 'mRNA_with_minus_2_frameshift' EquivalentTo 'mRNA_with_frameshift' and (http://purl.obolibrary.org/obo/so#has_quality some 'minus_2_frameshift') 'mRNA_with_minus_2_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'minus_2_frameshift' http://purl.obolibrary.org/obo/SO_0000333 exon_junction 'exon_junction' SubClassOf 'part_of' some 'mature_transcript' 'exon_junction' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mature_transcript' http://purl.obolibrary.org/obo/SO_0001661 RNA_polymerase_II_TATA_box 'RNA_polymerase_II_TATA_box' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'RNA_polymerase_II_TATA_box' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0001662 RNA_polymerase_III_TATA_box 'RNA_polymerase_III_TATA_box' SubClassOf 'part_of' some 'RNApol_III_promoter' 'RNA_polymerase_III_TATA_box' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_III_promoter' http://purl.obolibrary.org/obo/SO_0001258 octamer_motif 'octamer_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'octamer_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001259 apicoplast_chromosome 'apicoplast_chromosome' SubClassOf 'has_origin' some 'apicoplast_sequence' 'apicoplast_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'apicoplast_sequence') 'apicoplast_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'apicoplast_sequence') 'apicoplast_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'apicoplast_sequence' http://purl.obolibrary.org/obo/SO_0001250 fingerprint_map 'fingerprint_map' SubClassOf 'has_part' some 'restriction_fragment' 'fingerprint_map' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'restriction_fragment' http://purl.obolibrary.org/obo/SO_0001251 STS_map 'STS_map' SubClassOf 'has_part' some 'STS' 'STS_map' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'STS' http://purl.obolibrary.org/obo/SO_0001252 RH_map 'RH_map' SubClassOf 'has_part' some 'STS' 'RH_map' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'STS' http://purl.obolibrary.org/obo/SO_0001245 miRNA_stem 'miRNA_stem' SubClassOf 'part_of' some 'pre_miRNA' 'miRNA_stem' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0001246 miRNA_loop 'miRNA_loop' SubClassOf 'part_of' some 'pre_miRNA' 'miRNA_loop' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0001240 TSS_region 'TSS_region' SubClassOf 'has_part' some 'TSS' 'TSS_region' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'TSS' http://purl.obolibrary.org/obo/SO_0001237 amino_acid 'amino_acid' SubClassOf 'part_of' some 'polypeptide' 'amino_acid' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'polypeptide' http://purl.obolibrary.org/obo/SO_0000380 hammerhead_ribozyme 'hammerhead_ribozyme' EquivalentTo 'RNA_motif' and ('has_quality' some 'ribozymic') 'hammerhead_ribozyme' SubClassOf 'has_quality' some 'ribozymic' 'hammerhead_ribozyme' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'ribozymic' 'hammerhead_ribozyme' EquivalentTo 'RNA_motif' and (http://purl.obolibrary.org/obo/so#has_quality some 'ribozymic') http://purl.obolibrary.org/obo/SO_0000374 ribozyme 'ribozyme' SubClassOf 'has_quality' some 'ribozymic' 'ribozyme' EquivalentTo 'enzymatic_RNA' and ('has_quality' some 'ribozymic') 'ribozyme' EquivalentTo 'enzymatic_RNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'ribozymic') 'ribozyme' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'ribozymic' http://purl.obolibrary.org/obo/SO_0001224 gene_silenced_by_RNA_interference 'gene_silenced_by_RNA_interference' SubClassOf 'has_quality' some 'silenced_by_RNA_interference' 'gene_silenced_by_RNA_interference' EquivalentTo 'silenced_gene' and ('has_quality' some 'silenced_by_RNA_interference') 'gene_silenced_by_RNA_interference' EquivalentTo 'silenced_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_RNA_interference') 'gene_silenced_by_RNA_interference' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_RNA_interference' http://purl.obolibrary.org/obo/SO_0000373 recombinationally_inverted_gene 'recombinationally_inverted_gene' SubClassOf 'has_quality' some 'inversion' 'recombinationally_inverted_gene' EquivalentTo 'recombinationally_rearranged_gene' and ('has_quality' some 'inversion') 'recombinationally_inverted_gene' EquivalentTo 'recombinationally_rearranged_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'inversion') 'recombinationally_inverted_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'inversion' http://purl.obolibrary.org/obo/SO_0001225 gene_silenced_by_histone_modification 'gene_silenced_by_histone_modification' SubClassOf 'has_quality' some 'silenced_by_histone_modification' 'gene_silenced_by_histone_modification' EquivalentTo 'silenced_gene' and ('has_quality' some 'silenced_by_histone_modification') 'gene_silenced_by_histone_modification' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_histone_modification' 'gene_silenced_by_histone_modification' EquivalentTo 'silenced_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_histone_modification') http://purl.obolibrary.org/obo/SO_0000372 enzymatic_RNA 'enzymatic_RNA' EquivalentTo 'transcript' and ('has_quality' some 'enzymatic') 'enzymatic_RNA' SubClassOf 'has_quality' some 'enzymatic' 'enzymatic_RNA' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'enzymatic') 'enzymatic_RNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'enzymatic' http://purl.obolibrary.org/obo/SO_0001226 gene_silenced_by_histone_methylation 'gene_silenced_by_histone_methylation' EquivalentTo 'gene_silenced_by_histone_modification' and ('has_quality' some 'silenced_by_histone_methylation') 'gene_silenced_by_histone_methylation' SubClassOf 'has_quality' some 'silenced_by_histone_methylation' 'gene_silenced_by_histone_methylation' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_histone_methylation' 'gene_silenced_by_histone_methylation' EquivalentTo 'gene_silenced_by_histone_modification' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_histone_methylation') http://purl.obolibrary.org/obo/SO_0001227 gene_silenced_by_histone_deacetylation 'gene_silenced_by_histone_deacetylation' EquivalentTo 'gene_silenced_by_histone_modification' and ('has_quality' some 'silenced_by_histone_deacetylation') 'gene_silenced_by_histone_deacetylation' SubClassOf 'has_quality' some 'silenced_by_histone_deacetylation' 'gene_silenced_by_histone_deacetylation' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_histone_deacetylation' 'gene_silenced_by_histone_deacetylation' EquivalentTo 'gene_silenced_by_histone_modification' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_histone_deacetylation') http://purl.obolibrary.org/obo/SO_0001739 gene_with_non_canonical_start_codon 'gene_with_non_canonical_start_codon' EquivalentTo 'gene' and ('contains' some 'non_canonical_start_codon') 'gene_with_non_canonical_start_codon' SubClassOf 'contains' some 'non_canonical_start_codon' 'gene_with_non_canonical_start_codon' SubClassOf http://purl.obolibrary.org/obo/so#contains some 'non_canonical_start_codon' 'gene_with_non_canonical_start_codon' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#contains some 'non_canonical_start_codon') http://purl.obolibrary.org/obo/SO_0000889 paternally_imprinted_gene 'paternally_imprinted_gene' SubClassOf 'has_quality' some 'paternally_imprinted' 'paternally_imprinted_gene' EquivalentTo 'gene' and ('has_quality' some 'paternally_imprinted') 'paternally_imprinted_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'paternally_imprinted') 'paternally_imprinted_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'paternally_imprinted' http://purl.obolibrary.org/obo/SO_0000888 maternally_imprinted_gene 'maternally_imprinted_gene' EquivalentTo 'gene' and ('has_quality' some 'maternally_imprinted') 'maternally_imprinted_gene' SubClassOf 'has_quality' some 'maternally_imprinted' 'maternally_imprinted_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'maternally_imprinted') 'maternally_imprinted_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'maternally_imprinted' http://purl.obolibrary.org/obo/SO_0000403 U14_snoRNA 'U14_snoRNA' SubClassOf 'derives_from' some 'U14_snoRNA_primary_transcript' 'U14_snoRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'U14_snoRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_1000171 deficient_inversion 'deficient_inversion' SubClassOf 'has_part' some 'deletion' 'deficient_inversion' SubClassOf 'has_part' some 'inversion' 'deficient_inversion' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'inversion' 'deficient_inversion' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'deletion' http://purl.obolibrary.org/obo/SO_0001720 epigenetically_modified_region 'epigenetically_modified_region' SubClassOf 'has_quality' some 'epigenetically_modified' 'epigenetically_modified_region' EquivalentTo 'biological_region' and ('has_quality' some 'epigenetically_modified') 'epigenetically_modified_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'epigenetically_modified' 'epigenetically_modified_region' EquivalentTo 'biological_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'epigenetically_modified') http://purl.obolibrary.org/obo/SO_0000873 edited_transcript 'edited_transcript' SubClassOf 'has_part' some 'anchor_binding_site' 'edited_transcript' SubClassOf 'has_quality' some 'edited' 'edited_transcript' SubClassOf 'guided_by' some 'guide_RNA' 'edited_transcript' EquivalentTo 'transcript' and ('has_quality' some 'edited') 'edited_transcript' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'edited') 'edited_transcript' SubClassOf http://purl.obolibrary.org/obo/so#guided_by some 'guide_RNA' 'edited_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'edited' 'edited_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'anchor_binding_site' http://purl.obolibrary.org/obo/SO_0000872 trans_spliced_mRNA 'trans_spliced_mRNA' SubClassOf 'adjacent_to' some 'spliced_leader_RNA' 'trans_spliced_mRNA' EquivalentTo 'mRNA' and ('adjacent_to' some 'spliced_leader_RNA') and ('has_quality' some 'trans_spliced') 'trans_spliced_mRNA' SubClassOf 'has_quality' some 'trans_spliced' 'trans_spliced_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'trans_spliced' 'trans_spliced_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#adjacent_to some 'spliced_leader_RNA' 'trans_spliced_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#adjacent_to some 'spliced_leader_RNA') and (http://purl.obolibrary.org/obo/so#has_quality some 'trans_spliced') http://purl.obolibrary.org/obo/SO_0000871 polyadenylated_mRNA 'polyadenylated_mRNA' EquivalentTo 'mRNA' and ('adjacent_to' some 'polyA_sequence') and ('has_quality' some 'polyadenylated') 'polyadenylated_mRNA' SubClassOf 'adjacent_to' some 'polyA_sequence' 'polyadenylated_mRNA' SubClassOf 'has_quality' some 'polyadenylated' 'polyadenylated_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#adjacent_to some 'polyA_sequence') and (http://purl.obolibrary.org/obo/so#has_quality some 'polyadenylated') 'polyadenylated_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#adjacent_to some 'polyA_sequence' 'polyadenylated_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'polyadenylated' http://purl.obolibrary.org/obo/SO_1000159 uninverted_intrachromosomal_transposition 'uninverted_intrachromosomal_transposition' EquivalentTo 'intrachromosomal_transposition' and ('has_part' some 'direct') 'uninverted_intrachromosomal_transposition' SubClassOf 'has_part' some 'direct' 'uninverted_intrachromosomal_transposition' EquivalentTo 'intrachromosomal_transposition' and (http://purl.obolibrary.org/obo/so#has_part some 'direct') 'uninverted_intrachromosomal_transposition' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'direct' http://purl.obolibrary.org/obo/SO_1000158 inverted_intrachromosomal_transposition 'inverted_intrachromosomal_transposition' SubClassOf 'has_part' some 'inversion' 'inverted_intrachromosomal_transposition' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'inversion' http://purl.obolibrary.org/obo/SO_0000862 capped_mRNA 'capped_mRNA' EquivalentTo 'mRNA' and ('adjacent_to' some 'cap') and ('has_quality' some 'capped') 'capped_mRNA' SubClassOf 'has_quality' some 'capped' 'capped_mRNA' SubClassOf 'adjacent_to' some 'cap' 'capped_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#adjacent_to some 'cap' 'capped_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#adjacent_to some 'cap') and (http://purl.obolibrary.org/obo/so#has_quality some 'capped') 'capped_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'capped' http://purl.obolibrary.org/obo/SO_0000861 capped_primary_transcript 'capped_primary_transcript' SubClassOf 'has_quality' some 'capped' 'capped_primary_transcript' EquivalentTo 'primary_transcript' and ('adjacent_to' some 'cap') and ('has_quality' some 'capped') 'capped_primary_transcript' SubClassOf 'adjacent_to' some 'cap' 'capped_primary_transcript' EquivalentTo 'primary_transcript' and (http://purl.obolibrary.org/obo/so#adjacent_to some 'cap') and (http://purl.obolibrary.org/obo/so#has_quality some 'capped') 'capped_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'capped' 'capped_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#adjacent_to some 'cap' http://purl.obolibrary.org/obo/SO_0001700 histone_modification 'histone_modification' EquivalentTo 'post_translationally_modified_region' and ('has_quality' some 'epigenetically_modified') 'histone_modification' SubClassOf 'has_quality' some 'epigenetically_modified' 'histone_modification' EquivalentTo 'post_translationally_modified_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'epigenetically_modified') 'histone_modification' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'epigenetically_modified' http://purl.obolibrary.org/obo/SO_0000855 orthologous_region 'orthologous_region' EquivalentTo 'homologous_region' and ('has_quality' some 'orthologous') 'orthologous_region' SubClassOf 'has_quality' some 'orthologous' 'orthologous_region' EquivalentTo 'homologous_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'orthologous') 'orthologous_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'orthologous' http://purl.obolibrary.org/obo/SO_0000854 paralogous_region 'paralogous_region' EquivalentTo 'homologous_region' and ('has_quality' some 'paralogous') 'paralogous_region' SubClassOf 'has_quality' some 'paralogous' 'paralogous_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'paralogous' 'paralogous_region' EquivalentTo 'homologous_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'paralogous') http://purl.obolibrary.org/obo/SO_0000853 homologous_region 'homologous_region' EquivalentTo 'conserved_region' and ('has_quality' some 'homologous') 'homologous_region' SubClassOf 'has_quality' some 'homologous' 'homologous_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'homologous' 'homologous_region' EquivalentTo 'conserved_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'homologous') http://purl.obolibrary.org/obo/SO_0000852 exon_region 'exon_region' SubClassOf 'part_of' some 'exon' 'exon_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'exon' http://purl.obolibrary.org/obo/SO_0000851 CDS_region 'CDS_region' SubClassOf 'part_of' some 'CDS' 'CDS_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'CDS' http://purl.obolibrary.org/obo/SO_0000850 five_prime_LTR_component 'five_prime_LTR_component' SubClassOf 'part_of' some 'five_prime_LTR' 'five_prime_LTR_component' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_LTR' http://purl.obolibrary.org/obo/SO_0000440 vector_replicon 'vector_replicon' SubClassOf 'part_of' some 'clone' 'vector_replicon' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'clone' http://purl.obolibrary.org/obo/SO_0000435 RR_tract 'RR_tract' SubClassOf 'part_of' some 'LTR_retrotransposon' 'RR_tract' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'LTR_retrotransposon' http://purl.obolibrary.org/obo/SO_0000434 target_site_duplication 'target_site_duplication' EquivalentTo 'direct_repeat' and ('derives_from' some 'transposable_element') 'target_site_duplication' SubClassOf 'derives_from' some 'transposable_element' 'target_site_duplication' EquivalentTo 'direct_repeat' and (http://purl.obolibrary.org/obo/so#derives_from some 'transposable_element') 'target_site_duplication' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'transposable_element' http://purl.obolibrary.org/obo/SO_0000433 non_LTR_retrotransposon_polymeric_tract 'non_LTR_retrotransposon_polymeric_tract' SubClassOf 'part_of' some 'non_LTR_retrotransposon' 'non_LTR_retrotransposon_polymeric_tract' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'non_LTR_retrotransposon' http://purl.obolibrary.org/obo/SO_0000892 positively_autoregulated_gene 'positively_autoregulated_gene' SubClassOf 'has_quality' some 'positively_autoregulated' 'positively_autoregulated_gene' EquivalentTo 'gene' and ('has_quality' some 'positively_autoregulated') 'positively_autoregulated_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'positively_autoregulated' 'positively_autoregulated_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'positively_autoregulated') http://purl.obolibrary.org/obo/SO_0000891 negatively_autoregulated_gene 'negatively_autoregulated_gene' EquivalentTo 'gene' and ('has_quality' some 'negatively_autoregulated') 'negatively_autoregulated_gene' SubClassOf 'has_quality' some 'negatively_autoregulated' 'negatively_autoregulated_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'negatively_autoregulated') 'negatively_autoregulated_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'negatively_autoregulated' http://purl.obolibrary.org/obo/SO_0000890 post_translationally_regulated_gene 'post_translationally_regulated_gene' SubClassOf 'has_quality' some 'post_translationally_regulated' 'post_translationally_regulated_gene' EquivalentTo 'gene' and ('has_quality' some 'post_translationally_regulated') 'post_translationally_regulated_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'post_translationally_regulated') 'post_translationally_regulated_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'post_translationally_regulated' http://purl.obolibrary.org/obo/SO_0000419 mature_protein_region 'mature_protein_region' SubClassOf 'part_of' some 'immature_peptide_region' 'mature_protein_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'immature_peptide_region' http://purl.obolibrary.org/obo/SO_0000418 signal_peptide 'signal_peptide' SubClassOf 'part_of' some 'propeptide' 'signal_peptide' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'propeptide' http://purl.obolibrary.org/obo/SO_0000898 epigenetically_modified_gene 'epigenetically_modified_gene' SubClassOf 'has_quality' some 'epigenetically_modified' 'epigenetically_modified_gene' EquivalentTo 'gene' and ('has_quality' some 'epigenetically_modified') 'epigenetically_modified_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'epigenetically_modified') 'epigenetically_modified_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'epigenetically_modified' http://purl.obolibrary.org/obo/SO_0000897 allelically_excluded_gene 'allelically_excluded_gene' EquivalentTo 'epigenetically_modified_gene' and ('has_quality' some 'allelically_excluded') 'allelically_excluded_gene' SubClassOf 'has_quality' some 'allelically_excluded' 'allelically_excluded_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'allelically_excluded' 'allelically_excluded_gene' EquivalentTo 'epigenetically_modified_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'allelically_excluded') http://purl.obolibrary.org/obo/SO_0000896 translationally_regulated_gene 'translationally_regulated_gene' EquivalentTo 'gene' and ('has_quality' some 'translationally_regulated') 'translationally_regulated_gene' SubClassOf 'has_quality' some 'translationally_regulated' 'translationally_regulated_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'translationally_regulated' 'translationally_regulated_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'translationally_regulated') http://purl.obolibrary.org/obo/SO_0000411 rescue_region 'rescue_region' EquivalentTo 'reagent' and ('has_quality' some 'rescue') 'rescue_region' SubClassOf 'has_quality' some 'rescue' 'rescue_region' EquivalentTo 'reagent' and (http://purl.obolibrary.org/obo/so#has_quality some 'rescue') 'rescue_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'rescue' http://purl.obolibrary.org/obo/SO_0000809 invalidated_cDNA_clone 'invalidated_cDNA_clone' EquivalentTo 'cDNA_clone' and ('has_quality' some 'invalidated') 'invalidated_cDNA_clone' SubClassOf 'has_quality' some 'invalidated' 'invalidated_cDNA_clone' EquivalentTo 'cDNA_clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'invalidated') 'invalidated_cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'invalidated' http://purl.obolibrary.org/obo/SO_0000808 validated_cDNA_clone 'validated_cDNA_clone' SubClassOf 'has_quality' some 'validated' 'validated_cDNA_clone' EquivalentTo 'cDNA_clone' and ('has_quality' some 'validated') 'validated_cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'validated' 'validated_cDNA_clone' EquivalentTo 'cDNA_clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'validated') http://purl.obolibrary.org/obo/SO_0000807 engineered_tag 'engineered_tag' EquivalentTo 'tag' and ('has_quality' some 'engineered') 'engineered_tag' SubClassOf 'has_quality' some 'engineered' 'engineered_tag' EquivalentTo 'tag' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') 'engineered_tag' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' http://purl.obolibrary.org/obo/SO_0000805 engineered_foreign_region 'engineered_foreign_region' SubClassOf 'has_quality' some 'foreign' 'engineered_foreign_region' SubClassOf 'has_quality' some 'engineered' 'engineered_foreign_region' EquivalentTo 'region' and ('has_quality' some 'engineered') and ('has_quality' some 'foreign') 'engineered_foreign_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_foreign_region' EquivalentTo 'region' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') 'engineered_foreign_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' http://purl.obolibrary.org/obo/SO_0000804 engineered_region 'engineered_region' SubClassOf 'has_quality' some 'engineered' 'engineered_region' EquivalentTo 'region' and ('has_quality' some 'engineered') 'engineered_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_region' EquivalentTo 'region' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_0000849 three_prime_LTR_component 'three_prime_LTR_component' SubClassOf 'part_of' some 'three_prime_LTR' 'three_prime_LTR_component' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_LTR' http://purl.obolibrary.org/obo/SO_0000848 LTR_component 'LTR_component' SubClassOf 'part_of' some 'long_terminal_repeat' 'LTR_component' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'long_terminal_repeat' http://purl.obolibrary.org/obo/SO_0000847 tmRNA_region 'tmRNA_region' SubClassOf 'part_of' some 'tmRNA' 'tmRNA_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'tmRNA' http://purl.obolibrary.org/obo/SO_0000842 gene_component_region 'gene_component_region' SubClassOf 'part_of' some 'gene' 'gene_component_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'gene' http://purl.obolibrary.org/obo/SO_0000841 spliceosomal_intron_region 'spliceosomal_intron_region' SubClassOf 'part_of' some 'spliceosomal_intron' 'spliceosomal_intron_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'spliceosomal_intron' http://purl.obolibrary.org/obo/SO_0000839 polypeptide_region 'polypeptide_region' SubClassOf 'part_of' some 'polypeptide' 'polypeptide_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'polypeptide' http://purl.obolibrary.org/obo/SO_0000838 rRNA_primary_transcript_region 'rRNA_primary_transcript_region' SubClassOf 'part_of' some 'rRNA_primary_transcript' 'rRNA_primary_transcript_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'rRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000836 mRNA_region 'mRNA_region' SubClassOf 'part_of' some 'mRNA' 'mRNA_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mRNA' http://purl.obolibrary.org/obo/SO_0000835 primary_transcript_region 'primary_transcript_region' SubClassOf 'part_of' some 'primary_transcript' 'primary_transcript_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'primary_transcript' http://purl.obolibrary.org/obo/SO_0000833 transcript_region 'transcript_region' SubClassOf 'part_of' some 'transcript' 'transcript_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'transcript' http://purl.obolibrary.org/obo/SO_0000831 gene_member_region 'gene_member_region' SubClassOf 'member_of' some 'gene' 'gene_member_region' SubClassOf http://purl.obolibrary.org/obo/so#member_of some 'gene' http://purl.obolibrary.org/obo/SO_0000830 chromosome_part 'chromosome_part' SubClassOf 'part_of' some 'chromosome' 'chromosome_part' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'chromosome' http://purl.obolibrary.org/obo/SO_0000829 nucleomorphic_chromosome 'nucleomorphic_chromosome' SubClassOf 'has_origin' some 'nucleomorphic_sequence' 'nucleomorphic_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'nucleomorphic_sequence') 'nucleomorphic_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'nucleomorphic_sequence' 'nucleomorphic_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'nucleomorphic_sequence') http://purl.obolibrary.org/obo/SO_0000828 nuclear_chromosome 'nuclear_chromosome' SubClassOf 'has_origin' some 'nuclear_sequence' 'nuclear_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'nuclear_sequence') 'nuclear_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'nuclear_sequence') 'nuclear_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'nuclear_sequence' http://purl.obolibrary.org/obo/SO_0000825 micronuclear_chromosome 'micronuclear_chromosome' SubClassOf 'has_origin' some 'micronuclear_sequence' 'micronuclear_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'micronuclear_sequence') 'micronuclear_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'micronuclear_sequence') 'micronuclear_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'micronuclear_sequence' http://purl.obolibrary.org/obo/SO_0000824 macronuclear_chromosome 'macronuclear_chromosome' SubClassOf 'has_origin' some 'macronuclear_sequence' 'macronuclear_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'macronuclear_sequence') 'macronuclear_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'macronuclear_sequence') 'macronuclear_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'macronuclear_sequence' http://purl.obolibrary.org/obo/SO_0000823 leucoplast_chromosome 'leucoplast_chromosome' SubClassOf 'has_origin' some 'leucoplast_sequence' 'leucoplast_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'leucoplast_sequence') 'leucoplast_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'leucoplast_sequence' 'leucoplast_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'leucoplast_sequence') http://purl.obolibrary.org/obo/SO_0000822 cyanelle_chromosome 'cyanelle_chromosome' SubClassOf 'has_origin' some 'cyanelle_sequence' 'cyanelle_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'cyanelle_sequence') 'cyanelle_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'cyanelle_sequence' 'cyanelle_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'cyanelle_sequence') http://purl.obolibrary.org/obo/SO_0000821 chromoplast_chromosome 'chromoplast_chromosome' SubClassOf 'has_origin' some 'chromoplast_sequence' 'chromoplast_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'chromoplast_sequence') 'chromoplast_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'chromoplast_sequence' 'chromoplast_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'chromoplast_sequence') http://purl.obolibrary.org/obo/SO_0000820 chloroplast_chromosome 'chloroplast_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'chloroplast_sequence') 'chloroplast_chromosome' SubClassOf 'has_origin' some 'chloroplast_sequence' 'chloroplast_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'chloroplast_sequence' 'chloroplast_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'chloroplast_sequence') http://purl.obolibrary.org/obo/SO_0000819 mitochondrial_chromosome 'mitochondrial_chromosome' SubClassOf 'has_origin' some 'mitochondrial_sequence' 'mitochondrial_chromosome' EquivalentTo 'chromosome' and ('has_origin' some 'mitochondrial_sequence') 'mitochondrial_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_sequence') 'mitochondrial_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_sequence' http://purl.obolibrary.org/obo/SO_0000818 wild_type_rescue_gene 'wild_type_rescue_gene' EquivalentTo 'gene' and ('has_quality' some 'wild_type') 'wild_type_rescue_gene' SubClassOf 'has_quality' some 'wild_type' 'wild_type_rescue_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'wild_type' 'wild_type_rescue_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'wild_type') http://purl.obolibrary.org/obo/SO_0000816 rescue_gene 'rescue_gene' SubClassOf 'has_quality' some 'rescue' 'rescue_gene' EquivalentTo 'gene' and ('has_quality' some 'rescue') 'rescue_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'rescue' 'rescue_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'rescue') http://purl.obolibrary.org/obo/SO_0000813 partially_processed_cDNA_clone 'partially_processed_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and ('has_quality' some 'invalidated_by_partial_processing') 'partially_processed_cDNA_clone' SubClassOf 'has_quality' some 'invalidated_by_partial_processing' 'partially_processed_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_partial_processing') 'partially_processed_cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_partial_processing' http://purl.obolibrary.org/obo/SO_0000812 polyA_primed_cDNA_clone 'polyA_primed_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and ('has_quality' some 'invalidated_by_genomic_polyA_primed_cDNA') 'polyA_primed_cDNA_clone' SubClassOf 'has_quality' some 'invalidated_by_genomic_polyA_primed_cDNA' 'polyA_primed_cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_genomic_polyA_primed_cDNA' 'polyA_primed_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_genomic_polyA_primed_cDNA') http://purl.obolibrary.org/obo/SO_0000811 genomically_contaminated_cDNA_clone 'genomically_contaminated_cDNA_clone' SubClassOf 'has_quality' some 'invalidated_by_genomic_contamination' 'genomically_contaminated_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and ('has_quality' some 'invalidated_by_genomic_contamination') 'genomically_contaminated_cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_genomic_contamination' 'genomically_contaminated_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_genomic_contamination') http://purl.obolibrary.org/obo/SO_0000810 chimeric_cDNA_clone 'chimeric_cDNA_clone' SubClassOf 'has_quality' some 'invalidated_by_chimeric_cDNA' 'chimeric_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and ('has_quality' some 'invalidated_by_chimeric_cDNA') 'chimeric_cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_chimeric_cDNA' 'chimeric_cDNA_clone' EquivalentTo 'invalidated_cDNA_clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'invalidated_by_chimeric_cDNA') http://purl.obolibrary.org/obo/SO_0000089 kinetoplast_gene 'kinetoplast_gene' EquivalentTo 'mt_gene' and ('has_origin' some 'kinetoplast') 'kinetoplast_gene' SubClassOf 'has_origin' some 'kinetoplast' 'kinetoplast_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'kinetoplast' 'kinetoplast_gene' EquivalentTo 'mt_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'kinetoplast') http://purl.obolibrary.org/obo/SO_0000088 mt_gene 'mt_gene' EquivalentTo 'gene' and ('has_origin' some 'mitochondrial_sequence') 'mt_gene' SubClassOf 'has_origin' some 'mitochondrial_sequence' 'mt_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_sequence' 'mt_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_sequence') http://purl.obolibrary.org/obo/SO_0000087 nuclear_gene 'nuclear_gene' EquivalentTo 'gene' and ('has_origin' some 'nuclear_sequence') 'nuclear_gene' SubClassOf 'has_origin' some 'nuclear_sequence' 'nuclear_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'nuclear_sequence') 'nuclear_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'nuclear_sequence' http://purl.obolibrary.org/obo/SO_0000078 polycistronic_transcript 'polycistronic_transcript' EquivalentTo 'transcript' and ('has_quality' some 'polycistronic') 'polycistronic_transcript' SubClassOf 'has_quality' some 'polycistronic' 'polycistronic_transcript' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'polycistronic') 'polycistronic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'polycistronic' http://purl.obolibrary.org/obo/SO_0000079 dicistronic_transcript 'dicistronic_transcript' SubClassOf 'has_quality' some 'dicistronic' 'dicistronic_transcript' EquivalentTo 'transcript' and ('has_quality' some 'dicistronic') 'dicistronic_transcript' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'dicistronic') 'dicistronic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'dicistronic' http://purl.obolibrary.org/obo/SO_0000062 deficient_intrachromosomal_transposition 'deficient_intrachromosomal_transposition' SubClassOf 'has_part' some 'deletion' 'deficient_intrachromosomal_transposition' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'deletion' http://purl.obolibrary.org/obo/SO_0001384 CDS_fragment 'CDS_fragment' EquivalentTo 'CDS' and ('has_quality' some 'fragmentary') 'CDS_fragment' SubClassOf 'has_quality' some 'fragmentary' 'CDS_fragment' EquivalentTo 'CDS' and (http://purl.obolibrary.org/obo/so#has_quality some 'fragmentary') 'CDS_fragment' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'fragmentary' http://purl.obolibrary.org/obo/SO_0000099 proviral_gene 'proviral_gene' SubClassOf 'has_origin' some 'proviral_location' 'proviral_gene' EquivalentTo 'gene' and ('has_origin' some 'proviral_location') 'proviral_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'proviral_location') 'proviral_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'proviral_location' http://purl.obolibrary.org/obo/SO_0000098 plasmid_gene 'plasmid_gene' EquivalentTo 'gene' and ('has_origin' some 'plasmid_location') 'plasmid_gene' SubClassOf 'has_origin' some 'plasmid_location' 'plasmid_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'plasmid_location') 'plasmid_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'plasmid_location' http://purl.obolibrary.org/obo/SO_0000097 nucleomorph_gene 'nucleomorph_gene' SubClassOf 'has_origin' some 'nucleomorphic_sequence' 'nucleomorph_gene' EquivalentTo 'gene' and ('has_origin' some 'nucleomorphic_sequence') 'nucleomorph_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'nucleomorphic_sequence' 'nucleomorph_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'nucleomorphic_sequence') http://purl.obolibrary.org/obo/SO_0000096 proplastid_gene 'proplastid_gene' EquivalentTo 'plastid_gene' and ('has_origin' some 'proplastid_sequence') 'proplastid_gene' SubClassOf 'has_origin' some 'proplastid_sequence' 'proplastid_gene' EquivalentTo 'plastid_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'proplastid_sequence') 'proplastid_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'proplastid_sequence' http://purl.obolibrary.org/obo/SO_0000095 leucoplast_gene 'leucoplast_gene' SubClassOf 'has_origin' some 'leucoplast_sequence' 'leucoplast_gene' EquivalentTo 'plastid_gene' and ('has_origin' some 'leucoplast_sequence') 'leucoplast_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'leucoplast_sequence' 'leucoplast_gene' EquivalentTo 'plastid_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'leucoplast_sequence') http://purl.obolibrary.org/obo/SO_0000094 cyanelle_gene 'cyanelle_gene' SubClassOf 'has_origin' some 'cyanelle_sequence' 'cyanelle_gene' EquivalentTo 'plastid_gene' and ('has_origin' some 'cyanelle_sequence') 'cyanelle_gene' EquivalentTo 'plastid_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'cyanelle_sequence') 'cyanelle_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'cyanelle_sequence' http://purl.obolibrary.org/obo/SO_0000093 chromoplast_gene 'chromoplast_gene' SubClassOf 'has_origin' some 'chromoplast_sequence' 'chromoplast_gene' EquivalentTo 'plastid_gene' and ('has_origin' some 'chromoplast_sequence') 'chromoplast_gene' EquivalentTo 'plastid_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'chromoplast_sequence') 'chromoplast_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'chromoplast_sequence' http://purl.obolibrary.org/obo/SO_0000092 ct_gene 'ct_gene' EquivalentTo 'plastid_gene' and ('has_origin' some 'chloroplast_sequence') 'ct_gene' SubClassOf 'has_origin' some 'chloroplast_sequence' 'ct_gene' EquivalentTo 'plastid_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'chloroplast_sequence') 'ct_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'chloroplast_sequence' http://purl.obolibrary.org/obo/SO_0000091 apicoplast_gene 'apicoplast_gene' EquivalentTo 'plastid_gene' and ('has_origin' some 'apicoplast_sequence') 'apicoplast_gene' SubClassOf 'has_origin' some 'apicoplast_sequence' 'apicoplast_gene' EquivalentTo 'plastid_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'apicoplast_sequence') 'apicoplast_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'apicoplast_sequence' http://purl.obolibrary.org/obo/SO_0000090 plastid_gene 'plastid_gene' EquivalentTo 'gene' and ('has_origin' some 'plastid_sequence') 'plastid_gene' SubClassOf 'has_origin' some 'plastid_sequence' 'plastid_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'plastid_sequence') 'plastid_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'plastid_sequence' http://purl.obolibrary.org/obo/SO_0000485 DJ_J_cluster 'DJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'DJ_J_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000484 three_prime_coding_exon_noncoding_region 'three_prime_coding_exon_noncoding_region' SubClassOf 'part_of' some 'three_prime_coding_exon' 'three_prime_coding_exon_noncoding_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_coding_exon' http://purl.obolibrary.org/obo/SO_0000481 terminal_inverted_repeat 'terminal_inverted_repeat' SubClassOf 'part_of' some 'terminal_inverted_repeat_element' 'terminal_inverted_repeat' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'terminal_inverted_repeat_element' http://purl.obolibrary.org/obo/SO_0000007 read_pair 'read_pair' SubClassOf 'part_of' some 'contig' 'read_pair' SubClassOf 'part_of' some 'paired_end_fragment' 'read_pair' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'contig' 'read_pair' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'paired_end_fragment' http://purl.obolibrary.org/obo/SO_0000489 VJ_C_cluster 'VJ_C_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'VJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'VJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'VJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' http://purl.obolibrary.org/obo/SO_0000488 VDJ_J_cluster 'VDJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'VDJ_J_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'VDJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' 'VDJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000487 VDJ_J_C_cluster 'VDJ_J_C_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'VDJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'VDJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' 'VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000486 five_prime_coding_exon_noncoding_region 'five_prime_coding_exon_noncoding_region' SubClassOf 'part_of' some 'five_prime_coding_exon' 'five_prime_coding_exon_noncoding_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_coding_exon' http://purl.obolibrary.org/obo/SO_0000474 tiling_path_fragment 'tiling_path_fragment' SubClassOf 'part_of' some 'tiling_path' 'tiling_path_fragment' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'tiling_path' http://purl.obolibrary.org/obo/SO_0000479 trans_spliced_transcript 'trans_spliced_transcript' EquivalentTo 'transcript' and ('has_quality' some 'trans_spliced') 'trans_spliced_transcript' SubClassOf 'has_quality' some 'trans_spliced' 'trans_spliced_transcript' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'trans_spliced') 'trans_spliced_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'trans_spliced' http://purl.obolibrary.org/obo/SO_0001796 regional_centromere_central_core 'regional_centromere_central_core' SubClassOf 'part_of' some 'regional_centromere' 'regional_centromere_central_core' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'regional_centromere' http://purl.obolibrary.org/obo/SO_0001798 regional_centromere_inner_repeat_region 'regional_centromere_inner_repeat_region' SubClassOf 'part_of' some 'regional_centromere' 'regional_centromere_inner_repeat_region' SubClassOf 'part_of' some 'regional_centromere_central_core' 'regional_centromere_inner_repeat_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'regional_centromere_central_core' 'regional_centromere_inner_repeat_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'regional_centromere' http://purl.obolibrary.org/obo/SO_0001799 regional_centromere_outer_repeat_region 'regional_centromere_outer_repeat_region' SubClassOf 'part_of' some 'regional_centromere' 'regional_centromere_outer_repeat_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'regional_centromere' http://purl.obolibrary.org/obo/SO_0000468 golden_path_fragment 'golden_path_fragment' SubClassOf 'part_of' some 'golden_path' 'golden_path_fragment' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'golden_path' http://purl.obolibrary.org/obo/SO_0001793 clone_end 'clone_end' SubClassOf 'part_of' some 'clone' 'clone_end' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'clone' http://purl.obolibrary.org/obo/SO_0000464 decayed_exon 'decayed_exon' SubClassOf 'non_functional_homolog_of' some 'exon' 'decayed_exon' SubClassOf http://purl.obolibrary.org/obo/so#non_functional_homolog_of some 'exon' http://purl.obolibrary.org/obo/SO_0000451 gene_with_polyadenylated_mRNA 'gene_with_polyadenylated_mRNA' EquivalentTo 'protein_coding_gene' and ('transcribed_to' some 'polyadenylated_mRNA') 'gene_with_polyadenylated_mRNA' SubClassOf 'transcribed_to' some 'polyadenylated_mRNA' 'gene_with_polyadenylated_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'polyadenylated_mRNA' 'gene_with_polyadenylated_mRNA' EquivalentTo 'protein_coding_gene' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'polyadenylated_mRNA') http://purl.obolibrary.org/obo/SO_0001788 U_box 'U_box' SubClassOf 'part_of' some 'LTR_retrotransposon' 'U_box' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'LTR_retrotransposon' http://purl.obolibrary.org/obo/SO_0000459 gene_with_trans_spliced_transcript 'gene_with_trans_spliced_transcript' EquivalentTo 'gene' and ('transcribed_to' some 'trans_spliced_transcript') 'gene_with_trans_spliced_transcript' SubClassOf 'transcribed_to' some 'trans_spliced_transcript' 'gene_with_trans_spliced_transcript' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'trans_spliced_transcript') 'gene_with_trans_spliced_transcript' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'trans_spliced_transcript' http://purl.obolibrary.org/obo/SO_0000456 recombinationally_rearranged_gene 'recombinationally_rearranged_gene' SubClassOf 'has_quality' some 'recombinationally_rearranged' 'recombinationally_rearranged_gene' EquivalentTo 'gene' and ('has_quality' some 'recombinationally_rearranged') 'recombinationally_rearranged_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'recombinationally_rearranged' 'recombinationally_rearranged_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'recombinationally_rearranged') http://purl.obolibrary.org/obo/SO_0000455 gene_with_mRNA_with_frameshift 'gene_with_mRNA_with_frameshift' EquivalentTo 'protein_coding_gene' and ('has_quality' some 'frameshift') 'gene_with_mRNA_with_frameshift' SubClassOf 'has_quality' some 'frameshift' 'gene_with_mRNA_with_frameshift' EquivalentTo 'protein_coding_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'frameshift') 'gene_with_mRNA_with_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'frameshift' http://purl.obolibrary.org/obo/SO_0000040 genomic_clone 'genomic_clone' EquivalentTo 'clone' and ('has_quality' some 'genomic_DNA') 'genomic_clone' SubClassOf 'has_quality' some 'genomic_DNA' 'genomic_clone' EquivalentTo 'clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'genomic_DNA') 'genomic_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'genomic_DNA' http://purl.obolibrary.org/obo/SO_0000034 morpholino_oligo 'morpholino_oligo' EquivalentTo 'synthetic_oligo' and ('has_quality' some 'morpholino_backbone') 'morpholino_oligo' SubClassOf 'has_quality' some 'morpholino_backbone' 'morpholino_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'morpholino_backbone' 'morpholino_oligo' EquivalentTo 'synthetic_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'morpholino_backbone') http://purl.obolibrary.org/obo/SO_1000148 inversion_cum_translocation 'inversion_cum_translocation' SubClassOf 'has_part' some 'inversion' 'inversion_cum_translocation' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'inversion' http://purl.obolibrary.org/obo/SO_1000145 free_ring_duplication 'free_ring_duplication' EquivalentTo 'ring_chromosome' and ('has_quality' some 'free') 'free_ring_duplication' SubClassOf 'has_quality' some 'free' 'free_ring_duplication' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'free' 'free_ring_duplication' EquivalentTo 'ring_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'free') http://purl.obolibrary.org/obo/SO_1000147 deficient_translocation 'deficient_translocation' SubClassOf 'has_part' some 'deletion' 'deficient_translocation' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'deletion' http://purl.obolibrary.org/obo/SO_0000039 match_part 'match_part' SubClassOf 'part_of' some 'match' 'match_part' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'match' http://purl.obolibrary.org/obo/SO_0000035 riboswitch 'riboswitch' SubClassOf 'part_of' some 'mRNA' 'riboswitch' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mRNA' http://purl.obolibrary.org/obo/SO_0000496 five_prime_D_heptamer 'five_prime_D_heptamer' SubClassOf 'part_of' some 'five_prime_D_recombination_signal_sequence' 'five_prime_D_heptamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_D_recombination_signal_sequence' http://purl.obolibrary.org/obo/SO_0000495 three_prime_D_spacer 'three_prime_D_spacer' SubClassOf 'part_of' some 'three_prime_D_recombination_signal_sequence' 'three_prime_D_spacer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_D_recombination_signal_sequence' http://purl.obolibrary.org/obo/SO_0000494 three_prime_D_nonamer 'three_prime_D_nonamer' SubClassOf 'part_of' some 'three_prime_D_recombination_signal_sequence' 'three_prime_D_nonamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_D_recombination_signal_sequence' http://purl.obolibrary.org/obo/SO_0000493 three_prime_D_heptamer 'three_prime_D_heptamer' SubClassOf 'part_of' some 'three_prime_D_recombination_signal_sequence' 'three_prime_D_heptamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_D_recombination_signal_sequence' http://purl.obolibrary.org/obo/SO_0000491 VJ_J_cluster 'VJ_J_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'VJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'VJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' 'VJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000490 VJ_J_C_cluster 'VJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'VJ_J_C_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'VJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' 'VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000017 PSE_motif 'PSE_motif' SubClassOf 'part_of' some 'promoter' 'PSE_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'promoter' http://purl.obolibrary.org/obo/SO_0000016 BREu_motif 'BREu_motif' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'BREu_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0000015 DPE_motif 'DPE_motif' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'DPE_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0000014 INR_motif 'INR_motif' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'INR_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0000498 five_prime_D_spacer 'five_prime_D_spacer' SubClassOf 'part_of' some 'five_prime_D_recombination_signal_sequence' 'five_prime_D_spacer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_D_recombination_signal_sequence' http://purl.obolibrary.org/obo/SO_0000013 scRNA 'scRNA' SubClassOf 'derives_from' some 'scRNA_primary_transcript' 'scRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'scRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000497 five_prime_D_nonamer 'five_prime_D_nonamer' SubClassOf 'part_of' some 'five_prime_D_recombination_signal_sequence' 'five_prime_D_nonamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_D_recombination_signal_sequence' http://purl.obolibrary.org/obo/SO_0000529 V_D_DJ_J_C_cluster 'V_D_DJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000528 V_D_DJ_cluster 'V_D_DJ_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'V_D_DJ_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_D_DJ_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_D_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_D_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'V_D_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' http://purl.obolibrary.org/obo/SO_0000527 V_D_DJ_C_cluster 'V_D_DJ_C_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'V_D_DJ_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_D_DJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_D_DJ_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'V_D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' http://purl.obolibrary.org/obo/SO_0000526 V_cluster 'V_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000525 V_VJ_J_cluster 'V_VJ_J_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'V_VJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_VJ_J_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' 'V_VJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_VJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000524 V_VJ_cluster 'V_VJ_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'V_VJ_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' 'V_VJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000523 V_VJ_C_cluster 'V_VJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_VJ_C_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'V_VJ_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_VJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' 'V_VJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000522 V_VDJ_J_cluster 'V_VDJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_VDJ_J_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'V_VDJ_J_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VDJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_VDJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_VDJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' http://purl.obolibrary.org/obo/SO_0000521 V_VDJ_cluster 'V_VDJ_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VDJ_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'V_VDJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' 'V_VDJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000520 V_VDJ_C_cluster 'V_VDJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_VDJ_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VDJ_C_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'V_VDJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_VDJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_VDJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' http://purl.obolibrary.org/obo/SO_0000519 V_DJ_J_cluster 'V_DJ_J_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_DJ_J_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_DJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'V_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000518 V_DJ_cluster 'V_DJ_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_DJ_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'V_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000517 J_spacer 'J_spacer' SubClassOf 'part_of' some 'J_gene_recombination_feature' 'J_spacer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'J_gene_recombination_feature' http://purl.obolibrary.org/obo/SO_0000516 pseudogenic_transcript 'pseudogenic_transcript' SubClassOf 'part_of' some 'pseudogene' 'pseudogenic_transcript' SubClassOf 'non_functional_homolog_of' some 'transcript' 'pseudogenic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#non_functional_homolog_of some 'transcript' 'pseudogenic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pseudogene' http://purl.obolibrary.org/obo/SO_0000515 J_heptamer 'J_heptamer' SubClassOf 'part_of' some 'J_gene_recombination_feature' 'J_heptamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'J_gene_recombination_feature' http://purl.obolibrary.org/obo/SO_0000999 BAC_end 'BAC_end' SubClassOf 'part_of' some 'BAC' 'BAC_end' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'BAC' http://purl.obolibrary.org/obo/SO_0000514 J_nonamer 'J_nonamer' SubClassOf 'part_of' some 'J_gene_recombination_feature' 'J_nonamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'J_gene_recombination_feature' http://purl.obolibrary.org/obo/SO_0000513 J_cluster 'J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000997 gene_fragment 'gene_fragment' SubClassOf 'has_quality' some 'fragmentary' 'gene_fragment' EquivalentTo 'gene_component_region' and ('has_quality' some 'fragmentary') 'gene_fragment' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'fragmentary' 'gene_fragment' EquivalentTo 'gene_component_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'fragmentary') http://purl.obolibrary.org/obo/SO_0000996 predicted_gene 'predicted_gene' SubClassOf 'has_quality' some 'predicted' 'predicted_gene' EquivalentTo 'gene' and ('has_quality' some 'predicted') 'predicted_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'predicted') 'predicted_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'predicted' http://purl.obolibrary.org/obo/SO_0000511 J_C_cluster 'J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000995 consensus_mRNA 'consensus_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'consensus') 'consensus_mRNA' SubClassOf 'has_quality' some 'consensus' 'consensus_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'consensus' 'consensus_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'consensus') http://purl.obolibrary.org/obo/SO_0000994 consensus_region 'consensus_region' SubClassOf 'has_quality' some 'consensus' 'consensus_region' EquivalentTo 'region' and ('has_quality' some 'consensus') 'consensus_region' EquivalentTo 'region' and (http://purl.obolibrary.org/obo/so#has_quality some 'consensus') 'consensus_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'consensus' http://purl.obolibrary.org/obo/SO_0000992 BAC_cloned_genomic_insert 'BAC_cloned_genomic_insert' EquivalentTo 'cloned_genomic_insert' and ('derives_from' some 'BAC') 'BAC_cloned_genomic_insert' SubClassOf 'derives_from' some 'BAC' 'BAC_cloned_genomic_insert' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'BAC' 'BAC_cloned_genomic_insert' EquivalentTo 'cloned_genomic_insert' and (http://purl.obolibrary.org/obo/so#derives_from some 'BAC') http://purl.obolibrary.org/obo/SO_1000038 intrachromosomal_duplication 'intrachromosomal_duplication' EquivalentTo 'intrachromosomal_mutation' and ('has_part' some 'duplication') 'intrachromosomal_duplication' SubClassOf 'has_part' some 'duplication' 'intrachromosomal_duplication' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'duplication' 'intrachromosomal_duplication' EquivalentTo 'intrachromosomal_mutation' and (http://purl.obolibrary.org/obo/so#has_part some 'duplication') http://purl.obolibrary.org/obo/SO_0001837 mobile_element_insertion 'mobile_element_insertion' SubClassOf 'contains' some 'mobile_genetic_element' 'mobile_element_insertion' EquivalentTo 'insertion' and ('contains' some 'mobile_genetic_element') 'mobile_element_insertion' EquivalentTo 'insertion' and (http://purl.obolibrary.org/obo/so#contains some 'mobile_genetic_element') 'mobile_element_insertion' SubClassOf http://purl.obolibrary.org/obo/so#contains some 'mobile_genetic_element' http://purl.obolibrary.org/obo/SO_0000509 D_J_C_cluster 'D_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'D_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'D_J_C_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' http://purl.obolibrary.org/obo/SO_0000508 D_DJ_J_cluster 'D_DJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'D_DJ_J_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'D_DJ_J_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000507 pseudogenic_exon 'pseudogenic_exon' SubClassOf 'non_functional_homolog_of' some 'exon' 'pseudogenic_exon' SubClassOf 'part_of' some 'pseudogenic_transcript' 'pseudogenic_exon' SubClassOf http://purl.obolibrary.org/obo/so#non_functional_homolog_of some 'exon' 'pseudogenic_exon' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pseudogenic_transcript' http://purl.obolibrary.org/obo/SO_0000506 D_DJ_J_C_cluster 'D_DJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'D_DJ_J_C_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_DJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'D_DJ_J_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'D_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' http://purl.obolibrary.org/obo/SO_0000505 D_DJ_cluster 'D_DJ_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_DJ_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'D_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'D_DJ_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' http://purl.obolibrary.org/obo/SO_0000504 D_DJ_C_cluster 'D_DJ_C_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_DJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'D_DJ_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'D_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' http://purl.obolibrary.org/obo/SO_1000031 interchromosomal_mutation 'interchromosomal_mutation' EquivalentTo 'chromosome_structure_variation' and ('has_quality' some 'interchromosomal') 'interchromosomal_mutation' SubClassOf 'has_quality' some 'interchromosomal' 'interchromosomal_mutation' EquivalentTo 'chromosome_structure_variation' and (http://purl.obolibrary.org/obo/so#has_quality some 'interchromosomal') 'interchromosomal_mutation' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'interchromosomal' http://purl.obolibrary.org/obo/SO_1000030 chromosomal_inversion 'chromosomal_inversion' EquivalentTo 'intrachromosomal_mutation' and ('has_part' some 'inversion') 'chromosomal_inversion' SubClassOf 'has_part' some 'inversion' 'chromosomal_inversion' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'inversion' 'chromosomal_inversion' EquivalentTo 'intrachromosomal_mutation' and (http://purl.obolibrary.org/obo/so#has_part some 'inversion') http://purl.obolibrary.org/obo/SO_1000046 pericentric_inversion 'pericentric_inversion' EquivalentTo 'chromosomal_inversion' and ('has_quality' some 'pericentric') 'pericentric_inversion' SubClassOf 'has_quality' some 'pericentric' 'pericentric_inversion' EquivalentTo 'chromosomal_inversion' and (http://purl.obolibrary.org/obo/so#has_quality some 'pericentric') 'pericentric_inversion' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'pericentric' http://purl.obolibrary.org/obo/SO_1000045 ring_chromosome 'ring_chromosome' SubClassOf 'has_quality' some 'circular' 'ring_chromosome' EquivalentTo 'intrachromosomal_mutation' and ('has_quality' some 'circular') 'ring_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'circular' 'ring_chromosome' EquivalentTo 'intrachromosomal_mutation' and (http://purl.obolibrary.org/obo/so#has_quality some 'circular') http://purl.obolibrary.org/obo/SO_1000047 paracentric_inversion 'paracentric_inversion' SubClassOf 'has_quality' some 'paracentric' 'paracentric_inversion' EquivalentTo 'chromosomal_inversion' and ('has_quality' some 'paracentric') 'paracentric_inversion' EquivalentTo 'chromosomal_inversion' and (http://purl.obolibrary.org/obo/so#has_quality some 'paracentric') 'paracentric_inversion' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'paracentric' http://purl.obolibrary.org/obo/SO_1000041 intrachromosomal_transposition 'intrachromosomal_transposition' EquivalentTo 'intrachromosomal_mutation' and ('has_part' some 'translocation') and ('has_part' some 'duplication') 'intrachromosomal_transposition' SubClassOf 'has_part' some 'translocation' 'intrachromosomal_transposition' SubClassOf 'has_part' some 'duplication' 'intrachromosomal_transposition' EquivalentTo 'intrachromosomal_mutation' and (http://purl.obolibrary.org/obo/so#has_part some 'translocation') and (http://purl.obolibrary.org/obo/so#has_part some 'duplication') 'intrachromosomal_transposition' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'translocation' 'intrachromosomal_transposition' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'duplication' http://purl.obolibrary.org/obo/SO_0000975 minicircle_gene 'minicircle_gene' SubClassOf 'part_of' some 'minicircle' 'minicircle_gene' EquivalentTo 'kinetoplast_gene' and ('part_of' some 'minicircle') 'minicircle_gene' EquivalentTo 'kinetoplast_gene' and (http://purl.obolibrary.org/obo/so#part_of some 'minicircle') 'minicircle_gene' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'minicircle' http://purl.obolibrary.org/obo/SO_0000560 D_J_cluster 'D_J_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'D_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'D_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' http://purl.obolibrary.org/obo/SO_0001896 transposable_element_CDS 'transposable_element_CDS' SubClassOf 'part_of' some 'transposable_element' 'transposable_element_CDS' EquivalentTo 'CDS' and ('part_of' some 'transposable_element') 'transposable_element_CDS' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'transposable_element' 'transposable_element_CDS' EquivalentTo 'CDS' and (http://purl.obolibrary.org/obo/so#part_of some 'transposable_element') http://purl.obolibrary.org/obo/SO_0001897 transposable_element_pseudogene 'transposable_element_pseudogene' EquivalentTo 'pseudogene' and ('part_of' some 'transposable_element') 'transposable_element_pseudogene' SubClassOf 'part_of' some 'transposable_element' 'transposable_element_pseudogene' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'transposable_element' 'transposable_element_pseudogene' EquivalentTo 'pseudogene' and (http://purl.obolibrary.org/obo/so#part_of some 'transposable_element') http://purl.obolibrary.org/obo/SO_0001898 dg_repeat 'dg_repeat' SubClassOf 'part_of' some 'regional_centromere_outer_repeat_region' 'dg_repeat' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'regional_centromere_outer_repeat_region' http://purl.obolibrary.org/obo/SO_0001899 dh_repeat 'dh_repeat' SubClassOf 'part_of' some 'regional_centromere_outer_repeat_region' 'dh_repeat' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'regional_centromere_outer_repeat_region' http://purl.obolibrary.org/obo/SO_0000566 V_VJ_J_C_cluster 'V_VJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_VJ_J_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_VJ_J_C_cluster' SubClassOf 'has_part' some 'VJ_gene_segment' 'V_VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VJ_gene_segment' 'V_VJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000565 V_VDJ_J_C_cluster 'V_VDJ_J_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_VDJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' http://purl.obolibrary.org/obo/SO_0000564 V_DJ_J_C_cluster 'V_DJ_J_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_DJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_DJ_J_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_DJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'V_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000559 D_cluster 'D_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'D_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' http://purl.obolibrary.org/obo/SO_0000558 C_cluster 'C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000553 polyA_site 'polyA_site' SubClassOf 'part_of' some 'mature_transcript' 'polyA_site' SubClassOf 'part_of' some 'three_prime_UTR' 'polyA_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mature_transcript' 'polyA_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_UTR' http://purl.obolibrary.org/obo/SO_0000540 DJ_J_C_cluster 'DJ_J_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'DJ_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'DJ_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'DJ_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000548 gene_with_edited_transcript 'gene_with_edited_transcript' SubClassOf 'transcribed_to' some 'edited_transcript' 'gene_with_edited_transcript' EquivalentTo 'protein_coding_gene' and ('transcribed_to' some 'edited_transcript') 'gene_with_edited_transcript' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'edited_transcript' 'gene_with_edited_transcript' EquivalentTo 'protein_coding_gene' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'edited_transcript') http://purl.obolibrary.org/obo/SO_0000545 recoding_pseudoknot 'recoding_pseudoknot' SubClassOf 'part_of' some 'recoding_stimulatory_region' 'recoding_pseudoknot' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'recoding_stimulatory_region' http://purl.obolibrary.org/obo/SO_0000542 V_DJ_C_cluster 'V_DJ_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_DJ_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_DJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' http://purl.obolibrary.org/obo/SO_0001870 enhancerRNA 'enhancerRNA' SubClassOf 'transcribed_from' some 'enhancer' 'enhancerRNA' EquivalentTo 'ncRNA' and ('transcribed_from' some 'enhancer') 'enhancerRNA' EquivalentTo 'ncRNA' and (http://purl.obolibrary.org/obo/so#transcribed_from some 'enhancer') 'enhancerRNA' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_from some 'enhancer' http://purl.obolibrary.org/obo/SO_0000541 VDJ_C_cluster 'VDJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'VDJ_C_cluster' SubClassOf 'has_part' some 'VDJ_gene_segment' 'VDJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'VDJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'VDJ_gene_segment' http://purl.obolibrary.org/obo/SO_0001866 BAC_read_contig 'BAC_read_contig' EquivalentTo 'contig' and ('has_origin' some 'BAC') 'BAC_read_contig' SubClassOf 'part_of' some 'BAC' 'BAC_read_contig' SubClassOf 'has_origin' some 'BAC' 'BAC_read_contig' EquivalentTo 'contig' and (http://purl.obolibrary.org/obo/so#has_origin some 'BAC') 'BAC_read_contig' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'BAC' 'BAC_read_contig' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'BAC' http://purl.obolibrary.org/obo/SO_0000539 DJ_C_cluster 'DJ_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'DJ_C_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' 'DJ_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000537 V_spacer 'V_spacer' SubClassOf 'part_of' some 'V_gene_recombination_feature' 'V_spacer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'V_gene_recombination_feature' http://purl.obolibrary.org/obo/SO_0000536 V_nonamer 'V_nonamer' SubClassOf 'part_of' some 'V_gene_recombination_feature' 'V_nonamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'V_gene_recombination_feature' http://purl.obolibrary.org/obo/SO_0000535 V_J_C_cluster 'V_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_J_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' http://purl.obolibrary.org/obo/SO_0000534 V_J_cluster 'V_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_J_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000533 V_heptamer 'V_heptamer' SubClassOf 'part_of' some 'V_gene_recombination_feature' 'V_heptamer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'V_gene_recombination_feature' http://purl.obolibrary.org/obo/SO_0000532 V_D_J_cluster 'V_D_J_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_D_J_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'V_D_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_D_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'V_D_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_D_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' http://purl.obolibrary.org/obo/SO_0000531 V_D_J_C_cluster 'V_D_J_C_cluster' SubClassOf 'has_part' some 'C_gene_segment' 'V_D_J_C_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_D_J_C_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'V_D_J_C_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'V_D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'C_gene_segment' 'V_D_J_C_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' http://purl.obolibrary.org/obo/SO_0000530 V_D_DJ_J_cluster 'V_D_DJ_J_cluster' SubClassOf 'has_part' some 'J_gene_segment' 'V_D_DJ_J_cluster' SubClassOf 'has_part' some 'V_gene_segment' 'V_D_DJ_J_cluster' SubClassOf 'has_part' some 'D_gene_segment' 'V_D_DJ_J_cluster' SubClassOf 'has_part' some 'DJ_gene_segment' 'V_D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'V_gene_segment' 'V_D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'D_gene_segment' 'V_D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'J_gene_segment' 'V_D_DJ_J_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'DJ_gene_segment' http://purl.obolibrary.org/obo/SO_0000929 edited_mRNA 'edited_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'edited') 'edited_mRNA' SubClassOf 'has_quality' some 'edited' 'edited_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'edited' 'edited_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'edited') http://purl.obolibrary.org/obo/SO_0000915 engineered_insert 'engineered_insert' EquivalentTo 'clone_insert' and ('has_quality' some 'engineered') 'engineered_insert' SubClassOf 'has_quality' some 'engineered' 'engineered_insert' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_insert' EquivalentTo 'clone_insert' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_0000914 cloned_genomic_insert 'cloned_genomic_insert' EquivalentTo 'clone_insert' and ('has_quality' some 'genomic_DNA') 'cloned_genomic_insert' SubClassOf 'has_quality' some 'genomic_DNA' 'cloned_genomic_insert' EquivalentTo 'clone_insert' and (http://purl.obolibrary.org/obo/so#has_quality some 'genomic_DNA') 'cloned_genomic_insert' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'genomic_DNA' http://purl.obolibrary.org/obo/SO_0000913 cloned_cDNA_insert 'cloned_cDNA_insert' EquivalentTo 'clone_insert' and ('has_quality' some 'cDNA') 'cloned_cDNA_insert' SubClassOf 'has_quality' some 'cDNA' 'cloned_cDNA_insert' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'cDNA' 'cloned_cDNA_insert' EquivalentTo 'clone_insert' and (http://purl.obolibrary.org/obo/so#has_quality some 'cDNA') http://purl.obolibrary.org/obo/SO_0000902 transgene 'transgene' EquivalentTo 'gene' and ('has_quality' some 'transgenic') 'transgene' SubClassOf 'has_quality' some 'transgenic' 'transgene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'transgenic') 'transgene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'transgenic' http://purl.obolibrary.org/obo/SO_0001812 transmembrane_helix 'transmembrane_helix' SubClassOf 'part_of' some 'transmembrane_polypeptide_region' 'transmembrane_helix' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'transmembrane_polypeptide_region' http://purl.obolibrary.org/obo/SO_0000967 circular_double_stranded_RNA_chromosome 'circular_double_stranded_RNA_chromosome' SubClassOf 'has_quality' some 'circular' 'circular_double_stranded_RNA_chromosome' EquivalentTo 'double_stranded_RNA_chromosome' and ('has_quality' some 'circular') 'circular_double_stranded_RNA_chromosome' EquivalentTo 'double_stranded_RNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'circular') 'circular_double_stranded_RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'circular' http://purl.obolibrary.org/obo/SO_0000966 circular_single_stranded_RNA_chromosome 'circular_single_stranded_RNA_chromosome' SubClassOf 'has_quality' some 'circular' 'circular_single_stranded_RNA_chromosome' EquivalentTo 'single_stranded_RNA_chromosome' and ('has_quality' some 'circular') 'circular_single_stranded_RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'circular' 'circular_single_stranded_RNA_chromosome' EquivalentTo 'single_stranded_RNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'circular') http://purl.obolibrary.org/obo/SO_0000965 double_stranded_RNA_chromosome 'double_stranded_RNA_chromosome' SubClassOf 'has_quality' some 'double' 'double_stranded_RNA_chromosome' EquivalentTo 'RNA_chromosome' and ('has_quality' some 'double') 'double_stranded_RNA_chromosome' EquivalentTo 'RNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'double') 'double_stranded_RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'double' http://purl.obolibrary.org/obo/SO_0000964 linear_double_stranded_RNA_chromosome 'linear_double_stranded_RNA_chromosome' SubClassOf 'has_quality' some 'linear' 'linear_double_stranded_RNA_chromosome' EquivalentTo 'double_stranded_RNA_chromosome' and ('has_quality' some 'linear') 'linear_double_stranded_RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'linear' 'linear_double_stranded_RNA_chromosome' EquivalentTo 'double_stranded_RNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'linear') http://purl.obolibrary.org/obo/SO_0000963 linear_single_stranded_RNA_chromosome 'linear_single_stranded_RNA_chromosome' EquivalentTo 'single_stranded_RNA_chromosome' and ('has_quality' some 'linear') 'linear_single_stranded_RNA_chromosome' SubClassOf 'has_quality' some 'linear' 'linear_single_stranded_RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'linear' 'linear_single_stranded_RNA_chromosome' EquivalentTo 'single_stranded_RNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'linear') http://purl.obolibrary.org/obo/SO_0000962 single_stranded_RNA_chromosome 'single_stranded_RNA_chromosome' SubClassOf 'has_quality' some 'single' 'single_stranded_RNA_chromosome' EquivalentTo 'RNA_chromosome' and ('has_quality' some 'single') 'single_stranded_RNA_chromosome' EquivalentTo 'RNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'single') 'single_stranded_RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'single' http://purl.obolibrary.org/obo/SO_0000961 RNA_chromosome 'RNA_chromosome' EquivalentTo 'chromosome' and ('has_quality' some 'RNA') 'RNA_chromosome' SubClassOf 'has_quality' some 'RNA' 'RNA_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'RNA') 'RNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'RNA' http://purl.obolibrary.org/obo/SO_0000960 circular_single_stranded_DNA_chromosome 'circular_single_stranded_DNA_chromosome' EquivalentTo 'single_stranded_DNA_chromosome' and ('has_quality' some 'circular') 'circular_single_stranded_DNA_chromosome' SubClassOf 'has_quality' some 'circular' 'circular_single_stranded_DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'circular' 'circular_single_stranded_DNA_chromosome' EquivalentTo 'single_stranded_DNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'circular') http://purl.obolibrary.org/obo/SO_0001800 tasiRNA 'tasiRNA' SubClassOf 'derives_from' some 'tasiRNA_primary_transcript' 'tasiRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'tasiRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000959 linear_single_stranded_DNA_chromosome 'linear_single_stranded_DNA_chromosome' EquivalentTo 'single_stranded_DNA_chromosome' and ('has_quality' some 'linear') 'linear_single_stranded_DNA_chromosome' SubClassOf 'has_quality' some 'linear' 'linear_single_stranded_DNA_chromosome' EquivalentTo 'single_stranded_DNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'linear') 'linear_single_stranded_DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'linear' http://purl.obolibrary.org/obo/SO_0000958 circular_double_stranded_DNA_chromosome 'circular_double_stranded_DNA_chromosome' SubClassOf 'has_quality' some 'circular' 'circular_double_stranded_DNA_chromosome' EquivalentTo 'double_stranded_DNA_chromosome' and ('has_quality' some 'circular') 'circular_double_stranded_DNA_chromosome' EquivalentTo 'double_stranded_DNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'circular') 'circular_double_stranded_DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'circular' http://purl.obolibrary.org/obo/SO_0000957 linear_double_stranded_DNA_chromosome 'linear_double_stranded_DNA_chromosome' SubClassOf 'has_quality' some 'linear' 'linear_double_stranded_DNA_chromosome' EquivalentTo 'double_stranded_DNA_chromosome' and ('has_quality' some 'linear') 'linear_double_stranded_DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'linear' 'linear_double_stranded_DNA_chromosome' EquivalentTo 'double_stranded_DNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'linear') http://purl.obolibrary.org/obo/SO_0000956 single_stranded_DNA_chromosome 'single_stranded_DNA_chromosome' EquivalentTo 'DNA_chromosome' and ('has_quality' some 'single') 'single_stranded_DNA_chromosome' SubClassOf 'has_quality' some 'single' 'single_stranded_DNA_chromosome' EquivalentTo 'DNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'single') 'single_stranded_DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'single' http://purl.obolibrary.org/obo/SO_0000955 double_stranded_DNA_chromosome 'double_stranded_DNA_chromosome' EquivalentTo 'DNA_chromosome' and ('has_quality' some 'double') 'double_stranded_DNA_chromosome' SubClassOf 'has_quality' some 'double' 'double_stranded_DNA_chromosome' EquivalentTo 'DNA_chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'double') 'double_stranded_DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'double' http://purl.obolibrary.org/obo/SO_0000954 DNA_chromosome 'DNA_chromosome' SubClassOf 'has_quality' some 'DNA' 'DNA_chromosome' EquivalentTo 'chromosome' and ('has_quality' some 'DNA') 'DNA_chromosome' EquivalentTo 'chromosome' and (http://purl.obolibrary.org/obo/so#has_quality some 'DNA') 'DNA_chromosome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'DNA' http://purl.obolibrary.org/obo/SO_0000950 attC_site 'attC_site' SubClassOf 'part_of' some 'integron' 'attC_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'integron' http://purl.obolibrary.org/obo/SO_0000942 attP_site 'attP_site' SubClassOf 'part_of' some 'phage_sequence' 'attP_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'phage_sequence' http://purl.obolibrary.org/obo/SO_0000935 edited_CDS 'edited_CDS' SubClassOf 'has_quality' some 'edited' 'edited_CDS' EquivalentTo 'CDS' and ('has_quality' some 'edited') 'edited_CDS' EquivalentTo 'CDS' and (http://purl.obolibrary.org/obo/so#has_quality some 'edited') 'edited_CDS' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'edited' http://purl.obolibrary.org/obo/SO_0000930 guide_RNA_region 'guide_RNA_region' SubClassOf 'part_of' some 'guide_RNA' 'guide_RNA_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'guide_RNA' http://purl.obolibrary.org/obo/SO_0001050 repeat_fragment 'repeat_fragment' SubClassOf 'part_of' some 'nested_repeat' 'repeat_fragment' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'nested_repeat' http://purl.obolibrary.org/obo/SO_0001054 transposon_fragment 'transposon_fragment' SubClassOf 'part_of' some 'nested_transposon' 'transposon_fragment' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'nested_transposon' http://purl.obolibrary.org/obo/SO_0001047 IRRinv_site 'IRRinv_site' SubClassOf 'part_of' some 'inversion_site' 'IRRinv_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'inversion_site' http://purl.obolibrary.org/obo/SO_0000197 three_prime_coding_exon_coding_region 'three_prime_coding_exon_coding_region' SubClassOf 'part_of' some 'three_prime_coding_exon' 'three_prime_coding_exon_coding_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_coding_exon' http://purl.obolibrary.org/obo/SO_0000196 five_prime_coding_exon_coding_region 'five_prime_coding_exon_coding_region' SubClassOf 'part_of' some 'five_prime_coding_exon' 'five_prime_coding_exon_coding_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_coding_exon' http://purl.obolibrary.org/obo/SO_0001040 integrated_plasmid 'integrated_plasmid' EquivalentTo 'integrated_mobile_genetic_element' and ('derives_from' some 'plasmid') 'integrated_plasmid' SubClassOf 'derives_from' some 'plasmid' 'integrated_plasmid' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'plasmid' 'integrated_plasmid' EquivalentTo 'integrated_mobile_genetic_element' and (http://purl.obolibrary.org/obo/so#derives_from some 'plasmid') http://purl.obolibrary.org/obo/SO_0001043 attCtn_site 'attCtn_site' SubClassOf 'part_of' some 'conjugative_transposon' 'attCtn_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'conjugative_transposon' http://purl.obolibrary.org/obo/SO_0001046 IRLinv_site 'IRLinv_site' SubClassOf 'part_of' some 'inversion_site' 'IRLinv_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'inversion_site' http://purl.obolibrary.org/obo/SO_0001036 arginyl_tRNA 'arginyl_tRNA' SubClassOf 'derives_from' some 'arginine_tRNA_primary_transcript' 'arginyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'arginine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0001037 mobile_genetic_element 'mobile_genetic_element' EquivalentTo 'region' and ('has_quality' some 'mobile') 'mobile_genetic_element' SubClassOf 'has_quality' some 'mobile' 'mobile_genetic_element' EquivalentTo 'region' and (http://purl.obolibrary.org/obo/so#has_quality some 'mobile') 'mobile_genetic_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'mobile' http://purl.obolibrary.org/obo/SO_0001032 mitochondrial_DNA 'mitochondrial_DNA' SubClassOf 'has_quality' some 'DNA' 'mitochondrial_DNA' EquivalentTo 'mitochondrial_sequence' and ('has_quality' some 'DNA') 'mitochondrial_DNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'DNA' 'mitochondrial_DNA' EquivalentTo 'mitochondrial_sequence' and (http://purl.obolibrary.org/obo/so#has_quality some 'DNA') http://purl.obolibrary.org/obo/SO_0001033 chloroplast_DNA 'chloroplast_DNA' SubClassOf 'has_quality' some 'DNA' 'chloroplast_DNA' EquivalentTo 'chloroplast_sequence' and ('has_quality' some 'DNA') 'chloroplast_DNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'DNA' 'chloroplast_DNA' EquivalentTo 'chloroplast_sequence' and (http://purl.obolibrary.org/obo/so#has_quality some 'DNA') http://purl.obolibrary.org/obo/SO_0001034 miRtron 'miRtron' SubClassOf 'has_part' some 'pre_miRNA' 'miRtron' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0000176 minus_35_signal 'minus_35_signal' SubClassOf 'part_of' some 'bacterial_RNApol_promoter_sigma_ecf' 'minus_35_signal' SubClassOf 'part_of' some 'bacterial_RNApol_promoter_sigma_70' 'minus_35_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'bacterial_RNApol_promoter_sigma_70' 'minus_35_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'bacterial_RNApol_promoter_sigma_ecf' http://purl.obolibrary.org/obo/SO_0001026 genome 'genome' EquivalentTo 'sequence_collection' and ('has_part' some 'replicon') 'genome' SubClassOf 'has_part' some 'replicon' 'genome' EquivalentTo 'sequence_collection' and (http://purl.obolibrary.org/obo/so#has_part some 'replicon') 'genome' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'replicon' http://purl.obolibrary.org/obo/SO_0000175 minus_10_signal 'minus_10_signal' SubClassOf 'part_of' some 'bacterial_RNApol_promoter_sigma_70' 'minus_10_signal' SubClassOf 'part_of' some 'bacterial_RNApol_promoter_sigma_ecf' 'minus_10_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'bacterial_RNApol_promoter_sigma_70' 'minus_10_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'bacterial_RNApol_promoter_sigma_ecf' http://purl.obolibrary.org/obo/SO_0001027 genotype 'genotype' SubClassOf 'variant_of' some 'genome' 'genotype' SubClassOf http://purl.obolibrary.org/obo/so#variant_of some 'genome' http://purl.obolibrary.org/obo/SO_0000173 GC_rich_promoter_region 'GC_rich_promoter_region' SubClassOf 'part_of' some 'RNApol_II_promoter' 'GC_rich_promoter_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0000172 CAAT_signal 'CAAT_signal' SubClassOf 'part_of' some 'RNApol_II_promoter' 'CAAT_signal' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001021 chromosome_breakpoint 'chromosome_breakpoint' SubClassOf 'part_of' some 'chromosome' 'chromosome_breakpoint' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'chromosome' http://purl.obolibrary.org/obo/SO_0000179 clone_insert_start 'clone_insert_start' SubClassOf 'part_of' some 'clone_insert' 'clone_insert_start' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'clone_insert' http://purl.obolibrary.org/obo/SO_0001023 allele 'allele' SubClassOf 'variant_of' some 'gene' 'allele' SubClassOf http://purl.obolibrary.org/obo/so#variant_of some 'gene' http://purl.obolibrary.org/obo/SO_0001024 haplotype 'haplotype' SubClassOf 'variant_of' some 'haplotype_block' 'haplotype' SubClassOf http://purl.obolibrary.org/obo/so#variant_of some 'haplotype_block' http://purl.obolibrary.org/obo/SO_0001081 helix_turn_helix 'helix_turn_helix' SubClassOf 'has_part' some 'peptide_helix' 'helix_turn_helix' SubClassOf 'has_part' some 'polypeptide_turn_motif' 'helix_turn_helix' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'peptide_helix' 'helix_turn_helix' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'polypeptide_turn_motif' http://purl.obolibrary.org/obo/SO_0001072 extramembrane_polypeptide_region 'extramembrane_polypeptide_region' SubClassOf 'part_of' some 'membrane_structure' 'extramembrane_polypeptide_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'membrane_structure' http://purl.obolibrary.org/obo/SO_0001075 intramembrane_polypeptide_region 'intramembrane_polypeptide_region' SubClassOf 'part_of' some 'membrane_structure' 'intramembrane_polypeptide_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'membrane_structure' http://purl.obolibrary.org/obo/SO_0001061 propeptide_cleavage_site 'propeptide_cleavage_site' SubClassOf 'part_of' some 'propeptide' 'propeptide_cleavage_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'propeptide' http://purl.obolibrary.org/obo/SO_0000121 forward_primer 'forward_primer' EquivalentTo 'primer' and ('has_quality' some 'forward') 'forward_primer' SubClassOf 'has_quality' some 'forward' 'forward_primer' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'forward' 'forward_primer' EquivalentTo 'primer' and (http://purl.obolibrary.org/obo/so#has_quality some 'forward') http://purl.obolibrary.org/obo/SO_0001457 transcribed_cluster 'transcribed_cluster' SubClassOf 'has_part' some 'reagent' 'transcribed_cluster' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'reagent' http://purl.obolibrary.org/obo/SO_0000129 gene_silenced_by_DNA_methylation 'gene_silenced_by_DNA_methylation' SubClassOf 'has_quality' some 'silenced_by_DNA_methylation' 'gene_silenced_by_DNA_methylation' EquivalentTo 'gene_silenced_by_DNA_modification' and ('has_quality' some 'silenced_by_DNA_methylation') 'gene_silenced_by_DNA_methylation' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_DNA_methylation' 'gene_silenced_by_DNA_methylation' EquivalentTo 'gene_silenced_by_DNA_modification' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_DNA_methylation') http://purl.obolibrary.org/obo/SO_0000128 gene_silenced_by_DNA_modification 'gene_silenced_by_DNA_modification' EquivalentTo 'gene' and ('has_quality' some 'silenced_by_DNA_modification') 'gene_silenced_by_DNA_modification' SubClassOf 'has_quality' some 'silenced_by_DNA_modification' 'gene_silenced_by_DNA_modification' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_DNA_modification') 'gene_silenced_by_DNA_modification' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced_by_DNA_modification' http://purl.obolibrary.org/obo/SO_0000127 silenced_gene 'silenced_gene' EquivalentTo 'gene' and ('has_quality' some 'silenced') 'silenced_gene' SubClassOf 'has_quality' some 'silenced' 'silenced_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'silenced') 'silenced_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'silenced' http://purl.obolibrary.org/obo/SO_0000111 transposable_element_gene 'transposable_element_gene' SubClassOf 'part_of' some 'transposable_element' 'transposable_element_gene' EquivalentTo 'gene' and ('part_of' some 'transposable_element') 'transposable_element_gene' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'transposable_element' 'transposable_element_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#part_of some 'transposable_element') http://purl.obolibrary.org/obo/SO_0000594 H_ACA_box_snoRNA 'H_ACA_box_snoRNA' SubClassOf 'derives_from' some 'H_ACA_box_snoRNA_primary_transcript' 'H_ACA_box_snoRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'H_ACA_box_snoRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000593 C_D_box_snoRNA 'C_D_box_snoRNA' SubClassOf 'derives_from' some 'C_D_box_snoRNA_primary_transcript' 'C_D_box_snoRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'C_D_box_snoRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000590 SRP_RNA 'SRP_RNA' SubClassOf 'derives_from' some 'SRP_RNA_primary_transcript' 'SRP_RNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'SRP_RNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000118 transcript_with_translational_frameshift 'transcript_with_translational_frameshift' SubClassOf 'has_quality' some 'translationally_frameshifted' 'transcript_with_translational_frameshift' EquivalentTo 'transcript' and ('has_quality' some 'translationally_frameshifted') 'transcript_with_translational_frameshift' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'translationally_frameshifted') 'transcript_with_translational_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'translationally_frameshifted' http://purl.obolibrary.org/obo/SO_0000100 endogenous_retroviral_gene 'endogenous_retroviral_gene' EquivalentTo 'proviral_gene' and ('has_origin' some 'endogenous_retroviral_sequence') 'endogenous_retroviral_gene' SubClassOf 'has_origin' some 'endogenous_retroviral_sequence' 'endogenous_retroviral_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'endogenous_retroviral_sequence' 'endogenous_retroviral_gene' EquivalentTo 'proviral_gene' and (http://purl.obolibrary.org/obo/so#has_origin some 'endogenous_retroviral_sequence') http://purl.obolibrary.org/obo/SO_0000108 mRNA_with_frameshift 'mRNA_with_frameshift' SubClassOf 'has_quality' some 'frameshift' 'mRNA_with_frameshift' EquivalentTo 'mRNA' and ('has_quality' some 'frameshift') 'mRNA_with_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'frameshift' 'mRNA_with_frameshift' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'frameshift') http://purl.obolibrary.org/obo/SO_0000104 polypeptide 'polypeptide' SubClassOf 'derives_from' some 'CDS' 'polypeptide' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'CDS' http://purl.obolibrary.org/obo/SO_0000588 autocatalytically_spliced_intron 'autocatalytically_spliced_intron' SubClassOf 'has_quality' some 'ribozymic' 'autocatalytically_spliced_intron' EquivalentTo 'intron' and ('has_quality' some 'ribozymic') 'autocatalytically_spliced_intron' EquivalentTo 'intron' and (http://purl.obolibrary.org/obo/so#has_quality some 'ribozymic') 'autocatalytically_spliced_intron' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'ribozymic' http://purl.obolibrary.org/obo/SO_0000103 clone_insert_end 'clone_insert_end' SubClassOf 'part_of' some 'clone_insert' 'clone_insert_end' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'clone_insert' http://purl.obolibrary.org/obo/SO_0001431 cryptic_gene 'cryptic_gene' EquivalentTo 'gene' and ('has_quality' some 'cryptic') 'cryptic_gene' SubClassOf 'has_quality' some 'cryptic' 'cryptic_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'cryptic' 'cryptic_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'cryptic') http://purl.obolibrary.org/obo/SO_0000166 enhancer_bound_by_factor 'enhancer_bound_by_factor' SubClassOf 'has_quality' some 'bound_by_factor' 'enhancer_bound_by_factor' EquivalentTo 'enhancer' and ('has_quality' some 'bound_by_factor') 'enhancer_bound_by_factor' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'bound_by_factor' 'enhancer_bound_by_factor' EquivalentTo 'enhancer' and (http://purl.obolibrary.org/obo/so#has_quality some 'bound_by_factor') http://purl.obolibrary.org/obo/SO_0001014 intron_domain 'intron_domain' SubClassOf 'part_of' some 'intron' 'intron_domain' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'intron' http://purl.obolibrary.org/obo/SO_0001498 YAC_end 'YAC_end' SubClassOf 'part_of' some 'YAC' 'YAC_end' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'YAC' http://purl.obolibrary.org/obo/SO_0005854 gene_cassette_array 'gene_cassette_array' SubClassOf 'has_part' some 'gene_cassette' 'gene_cassette_array' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'gene_cassette' http://purl.obolibrary.org/obo/SO_0001016 internal_guide_sequence 'internal_guide_sequence' SubClassOf 'part_of' some 'group_I_intron' 'internal_guide_sequence' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'group_I_intron' http://purl.obolibrary.org/obo/SO_0005857 selenocysteinyl_tRNA 'selenocysteinyl_tRNA' SubClassOf 'derives_from' some 'selenocysteine_tRNA_primary_transcript' 'selenocysteinyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'selenocysteine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0005858 syntenic_region 'syntenic_region' SubClassOf 'has_quality' some 'syntenic' 'syntenic_region' EquivalentTo 'conserved_region' and ('has_quality' some 'syntenic') 'syntenic_region' EquivalentTo 'conserved_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'syntenic') 'syntenic_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'syntenic' http://purl.obolibrary.org/obo/SO_0001492 intronic_regulatory_region 'intronic_regulatory_region' SubClassOf 'part_of' some 'intron' 'intronic_regulatory_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'intron' http://purl.obolibrary.org/obo/SO_0001493 centromere_DNA_Element_I 'centromere_DNA_Element_I' SubClassOf 'part_of' some 'point_centromere' 'centromere_DNA_Element_I' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'point_centromere' http://purl.obolibrary.org/obo/SO_0001494 centromere_DNA_Element_II 'centromere_DNA_Element_II' SubClassOf 'part_of' some 'point_centromere' 'centromere_DNA_Element_II' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'point_centromere' http://purl.obolibrary.org/obo/SO_0001011 PNA_oligo 'PNA_oligo' SubClassOf 'has_quality' some 'PNA' 'PNA_oligo' EquivalentTo 'synthetic_oligo' and ('has_quality' some 'PNA') 'PNA_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'PNA' 'PNA_oligo' EquivalentTo 'synthetic_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'PNA') http://purl.obolibrary.org/obo/SO_0001495 centromere_DNA_Element_III 'centromere_DNA_Element_III' SubClassOf 'part_of' some 'point_centromere' 'centromere_DNA_Element_III' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'point_centromere' http://purl.obolibrary.org/obo/SO_0005850 primer_binding_site 'primer_binding_site' SubClassOf 'part_of' some 'LTR_retrotransposon' 'primer_binding_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'LTR_retrotransposon' http://purl.obolibrary.org/obo/SO_0001012 DNAzyme 'DNAzyme' EquivalentTo 'oligo' and ('has_quality' some 'enzymatic') 'DNAzyme' SubClassOf 'has_quality' some 'enzymatic' 'DNAzyme' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'enzymatic' 'DNAzyme' EquivalentTo 'oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'enzymatic') http://purl.obolibrary.org/obo/SO_0001496 telomeric_repeat 'telomeric_repeat' SubClassOf 'part_of' some 'telomere' 'telomeric_repeat' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'telomere' http://purl.obolibrary.org/obo/SO_0001497 X_element 'X_element' SubClassOf 'part_of' some 'telomere' 'X_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'telomere' http://purl.obolibrary.org/obo/SO_1000028 intrachromosomal_mutation 'intrachromosomal_mutation' SubClassOf 'has_quality' some 'intrachromosomal' 'intrachromosomal_mutation' EquivalentTo 'chromosome_structure_variation' and ('has_quality' some 'intrachromosomal') 'intrachromosomal_mutation' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'intrachromosomal' 'intrachromosomal_mutation' EquivalentTo 'chromosome_structure_variation' and (http://purl.obolibrary.org/obo/so#has_quality some 'intrachromosomal') http://purl.obolibrary.org/obo/SO_0005843 rRNA_cleavage_RNA 'rRNA_cleavage_RNA' SubClassOf 'derives_from' some 'rRNA_cleavage_snoRNA_primary_transcript' 'rRNA_cleavage_RNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'rRNA_cleavage_snoRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0001005 low_complexity_region 'low_complexity_region' EquivalentTo 'region' and ('has_quality' some 'low_complexity') 'low_complexity_region' SubClassOf 'has_quality' some 'low_complexity' 'low_complexity_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'low_complexity' 'low_complexity_region' EquivalentTo 'region' and (http://purl.obolibrary.org/obo/so#has_quality some 'low_complexity') http://purl.obolibrary.org/obo/SO_1000029 chromosomal_deletion 'chromosomal_deletion' SubClassOf 'has_part' some 'deletion' 'chromosomal_deletion' EquivalentTo 'intrachromosomal_mutation' and ('has_part' some 'deletion') 'chromosomal_deletion' EquivalentTo 'intrachromosomal_mutation' and (http://purl.obolibrary.org/obo/so#has_part some 'deletion') 'chromosomal_deletion' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'deletion' http://purl.obolibrary.org/obo/SO_0000150 read 'read' SubClassOf 'part_of' some 'contig' 'read' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'contig' http://purl.obolibrary.org/obo/SO_0001480 PAC_end 'PAC_end' SubClassOf 'part_of' some 'PAC' 'PAC_end' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'PAC' http://purl.obolibrary.org/obo/SO_0001484 X_element_combinatorial_repeat 'X_element_combinatorial_repeat' SubClassOf 'part_of' some 'telomere' 'X_element_combinatorial_repeat' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'telomere' http://purl.obolibrary.org/obo/SO_0001485 Y_prime_element 'Y_prime_element' SubClassOf 'part_of' some 'telomere' 'Y_prime_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'telomere' http://purl.obolibrary.org/obo/SO_0005841 methylation_guide_snoRNA 'methylation_guide_snoRNA' SubClassOf 'derives_from' some 'methylation_guide_snoRNA_primary_transcript' 'methylation_guide_snoRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'methylation_guide_snoRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0001476 natural_plasmid 'natural_plasmid' EquivalentTo 'plasmid' and ('has_quality' some 'natural') 'natural_plasmid' SubClassOf 'has_quality' some 'natural' 'natural_plasmid' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'natural' 'natural_plasmid' EquivalentTo 'plasmid' and (http://purl.obolibrary.org/obo/so#has_quality some 'natural') http://purl.obolibrary.org/obo/SO_0000141 terminator 'terminator' SubClassOf 'part_of' some 'transcript' 'terminator' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'transcript' http://purl.obolibrary.org/obo/SO_0000140 attenuator 'attenuator' SubClassOf 'part_of' some 'mRNA' 'attenuator' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mRNA' http://purl.obolibrary.org/obo/SO_0000149 contig 'contig' SubClassOf 'part_of' some 'supercontig' 'contig' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'supercontig' http://purl.obolibrary.org/obo/SO_0000148 supercontig 'supercontig' SubClassOf 'part_of' some 'ultracontig' 'supercontig' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'ultracontig' http://purl.obolibrary.org/obo/SO_0000132 reverse_primer 'reverse_primer' EquivalentTo 'primer' and ('has_quality' some 'reverse') 'reverse_primer' SubClassOf 'has_quality' some 'reverse' 'reverse_primer' EquivalentTo 'primer' and (http://purl.obolibrary.org/obo/so#has_quality some 'reverse') 'reverse_primer' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'reverse' http://purl.obolibrary.org/obo/SO_0000139 ribosome_entry_site 'ribosome_entry_site' SubClassOf 'part_of' some 'five_prime_UTR' 'ribosome_entry_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_UTR' http://purl.obolibrary.org/obo/SO_0000138 gene_rearranged_at_DNA_level 'gene_rearranged_at_DNA_level' SubClassOf 'has_quality' some 'rearranged_at_DNA_level' 'gene_rearranged_at_DNA_level' EquivalentTo 'epigenetically_modified_gene' and ('has_quality' some 'rearranged_at_DNA_level') 'gene_rearranged_at_DNA_level' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'rearranged_at_DNA_level' 'gene_rearranged_at_DNA_level' EquivalentTo 'epigenetically_modified_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'rearranged_at_DNA_level') http://purl.obolibrary.org/obo/SO_0001460 insulator_binding_site 'insulator_binding_site' SubClassOf 'part_of' some 'insulator' 'insulator_binding_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'insulator' http://purl.obolibrary.org/obo/SO_0001461 enhancer_binding_site 'enhancer_binding_site' SubClassOf 'part_of' some 'enhancer' 'enhancer_binding_site' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'enhancer' http://purl.obolibrary.org/obo/SO_0001462 contig_collection 'contig_collection' EquivalentTo 'sequence_conflict' and ('has_part' some 'contig') 'contig_collection' SubClassOf 'has_part' some 'contig' 'contig_collection' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'contig' 'contig_collection' EquivalentTo 'sequence_conflict' and (http://purl.obolibrary.org/obo/so#has_part some 'contig') http://purl.obolibrary.org/obo/SO_0000647 miRNA_primary_transcript 'miRNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miRNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_1001264 mRNA_recoded_by_translational_bypass 'mRNA_recoded_by_translational_bypass' SubClassOf 'has_quality' some 'recoded_by_translational_bypass' 'mRNA_recoded_by_translational_bypass' EquivalentTo 'mRNA' and ('has_quality' some 'recoded_by_translational_bypass') 'mRNA_recoded_by_translational_bypass' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'recoded_by_translational_bypass' 'mRNA_recoded_by_translational_bypass' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'recoded_by_translational_bypass') http://purl.obolibrary.org/obo/SO_1001265 mRNA_recoded_by_codon_redefinition 'mRNA_recoded_by_codon_redefinition' SubClassOf 'has_quality' some 'codon_redefined' 'mRNA_recoded_by_codon_redefinition' EquivalentTo 'mRNA' and ('has_quality' some 'codon_redefined') 'mRNA_recoded_by_codon_redefinition' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'codon_redefined') 'mRNA_recoded_by_codon_redefinition' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'codon_redefined' http://purl.obolibrary.org/obo/SO_0000644 antisense_RNA 'antisense_RNA' SubClassOf 'derives_from' some 'antisense_primary_transcript' 'antisense_RNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'antisense_primary_transcript' http://purl.obolibrary.org/obo/SO_1001261 recoded_mRNA 'recoded_mRNA' SubClassOf 'has_quality' some 'recoded' 'recoded_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'recoded') 'recoded_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'recoded' 'recoded_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'recoded') http://purl.obolibrary.org/obo/SO_0000637 engineered_plasmid 'engineered_plasmid' EquivalentTo 'plasmid' and ('has_quality' some 'engineered') 'engineered_plasmid' SubClassOf 'has_quality' some 'engineered' 'engineered_plasmid' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_plasmid' EquivalentTo 'plasmid' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_0000636 spliced_leader_RNA 'spliced_leader_RNA' SubClassOf 'part_of' some 'mini_exon_donor_RNA' 'spliced_leader_RNA' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mini_exon_donor_RNA' http://purl.obolibrary.org/obo/SO_0000634 polycistronic_mRNA 'polycistronic_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'polycistronic') 'polycistronic_mRNA' SubClassOf 'has_quality' some 'polycistronic' 'polycistronic_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'polycistronic') 'polycistronic_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'polycistronic' http://purl.obolibrary.org/obo/SO_0000633 monocistronic_mRNA 'monocistronic_mRNA' SubClassOf 'has_quality' some 'monocistronic' 'monocistronic_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'monocistronic') 'monocistronic_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'monocistronic') 'monocistronic_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'monocistronic' http://purl.obolibrary.org/obo/SO_0000632 monocistronic_primary_transcript 'monocistronic_primary_transcript' SubClassOf 'has_quality' some 'monocistronic' 'monocistronic_primary_transcript' EquivalentTo 'primary_transcript' and ('has_quality' some 'monocistronic') 'monocistronic_primary_transcript' EquivalentTo 'primary_transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'monocistronic') 'monocistronic_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'monocistronic' http://purl.obolibrary.org/obo/SO_0000631 polycistronic_primary_transcript 'polycistronic_primary_transcript' EquivalentTo 'primary_transcript' and ('has_quality' some 'polycistronic') 'polycistronic_primary_transcript' SubClassOf 'has_quality' some 'polycistronic' 'polycistronic_primary_transcript' EquivalentTo 'primary_transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'polycistronic') 'polycistronic_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'polycistronic' http://purl.obolibrary.org/obo/SO_0000630 upstream_AUG_codon 'upstream_AUG_codon' SubClassOf 'part_of' some 'UTR' 'upstream_AUG_codon' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'UTR' http://purl.obolibrary.org/obo/SO_1001249 CDS_supported_by_domain_match_data 'CDS_supported_by_domain_match_data' EquivalentTo 'CDS_supported_by_sequence_similarity_data' and ('has_quality' some 'supported_by_domain_match') 'CDS_supported_by_domain_match_data' SubClassOf 'has_quality' some 'supported_by_domain_match' 'CDS_supported_by_domain_match_data' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'supported_by_domain_match' 'CDS_supported_by_domain_match_data' EquivalentTo 'CDS_supported_by_sequence_similarity_data' and (http://purl.obolibrary.org/obo/so#has_quality some 'supported_by_domain_match') http://purl.obolibrary.org/obo/SO_1001246 CDS_independently_known 'CDS_independently_known' EquivalentTo 'CDS' and ('has_quality' some 'independently_known') 'CDS_independently_known' SubClassOf 'has_quality' some 'independently_known' 'CDS_independently_known' EquivalentTo 'CDS' and (http://purl.obolibrary.org/obo/so#has_quality some 'independently_known') 'CDS_independently_known' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'independently_known' http://purl.obolibrary.org/obo/SO_1001247 orphan_CDS 'orphan_CDS' EquivalentTo 'CDS_predicted' and ('has_origin' some 'orphan') 'orphan_CDS' SubClassOf 'has_origin' some 'orphan' 'orphan_CDS' EquivalentTo 'CDS_predicted' and (http://purl.obolibrary.org/obo/so#has_origin some 'orphan') 'orphan_CDS' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'orphan' http://purl.obolibrary.org/obo/SO_0000629 five_prime_open_reading_frame 'five_prime_open_reading_frame' SubClassOf 'part_of' some 'five_prime_UTR' 'five_prime_open_reading_frame' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'five_prime_UTR' http://purl.obolibrary.org/obo/SO_0000622 C_box 'C_box' SubClassOf 'part_of' some 'RNApol_III_promoter_type_1' 'C_box' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_III_promoter_type_1' http://purl.obolibrary.org/obo/SO_0000620 B_box 'B_box' SubClassOf 'part_of' some 'RNApol_III_promoter_type_2' 'B_box' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_III_promoter_type_2' http://purl.obolibrary.org/obo/SO_1001259 CDS_supported_by_EST_or_cDNA_data 'CDS_supported_by_EST_or_cDNA_data' SubClassOf 'has_quality' some 'supported_by_EST_or_cDNA' 'CDS_supported_by_EST_or_cDNA_data' EquivalentTo 'CDS_supported_by_sequence_similarity_data' and ('has_quality' some 'supported_by_EST_or_cDNA') 'CDS_supported_by_EST_or_cDNA_data' EquivalentTo 'CDS_supported_by_sequence_similarity_data' and (http://purl.obolibrary.org/obo/so#has_quality some 'supported_by_EST_or_cDNA') 'CDS_supported_by_EST_or_cDNA_data' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'supported_by_EST_or_cDNA' http://purl.obolibrary.org/obo/SO_1001254 CDS_predicted 'CDS_predicted' EquivalentTo 'CDS' and ('has_quality' some 'predicted') 'CDS_predicted' SubClassOf 'has_quality' some 'predicted' 'CDS_predicted' EquivalentTo 'CDS' and (http://purl.obolibrary.org/obo/so#has_quality some 'predicted') 'CDS_predicted' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'predicted' http://purl.obolibrary.org/obo/SO_1001251 CDS_supported_by_sequence_similarity_data 'CDS_supported_by_sequence_similarity_data' EquivalentTo 'CDS' and ('has_quality' some 'supported_by_sequence_similarity') 'CDS_supported_by_sequence_similarity_data' SubClassOf 'has_quality' some 'supported_by_sequence_similarity' 'CDS_supported_by_sequence_similarity_data' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'supported_by_sequence_similarity' 'CDS_supported_by_sequence_similarity_data' EquivalentTo 'CDS' and (http://purl.obolibrary.org/obo/so#has_quality some 'supported_by_sequence_similarity') http://purl.obolibrary.org/obo/SO_0000610 polyA_sequence 'polyA_sequence' SubClassOf 'adjacent_to' some 'mRNA' 'polyA_sequence' SubClassOf http://purl.obolibrary.org/obo/so#adjacent_to some 'mRNA' http://purl.obolibrary.org/obo/SO_0001994 intron_base_5 'intron_base_5' SubClassOf 'part_of' some 'extended_cis_splice_site' 'intron_base_5' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'extended_cis_splice_site' http://purl.obolibrary.org/obo/SO_0001999 mating_type_region_motif 'mating_type_region_motif' SubClassOf 'part_of' some 'mating_type_region' 'mating_type_region_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'mating_type_region' http://purl.obolibrary.org/obo/SO_0000666 mobile_intron 'mobile_intron' SubClassOf 'has_quality' some 'mobile' 'mobile_intron' EquivalentTo 'intron' and ('has_quality' some 'mobile') 'mobile_intron' EquivalentTo 'intron' and (http://purl.obolibrary.org/obo/so#has_quality some 'mobile') 'mobile_intron' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'mobile' http://purl.obolibrary.org/obo/SO_0000665 monocistronic_transcript 'monocistronic_transcript' EquivalentTo 'transcript' and ('has_quality' some 'monocistronic') 'monocistronic_transcript' SubClassOf 'has_quality' some 'monocistronic' 'monocistronic_transcript' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'monocistronic') 'monocistronic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'monocistronic' http://purl.obolibrary.org/obo/SO_0000650 small_subunit_rRNA 'small_subunit_rRNA' SubClassOf 'derives_from' some 'rRNA_small_subunit_primary_transcript' 'small_subunit_rRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'rRNA_small_subunit_primary_transcript' http://purl.obolibrary.org/obo/SO_0001501 peptide_collection 'peptide_collection' EquivalentTo 'sequence_collection' and ('has_part' some 'polypeptide') 'peptide_collection' SubClassOf 'has_part' some 'polypeptide' 'peptide_collection' EquivalentTo 'sequence_collection' and (http://purl.obolibrary.org/obo/so#has_part some 'polypeptide') 'peptide_collection' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'polypeptide' http://purl.obolibrary.org/obo/SO_0001507 variant_collection 'variant_collection' EquivalentTo 'sequence_collection' and ('has_part' some 'sequence_alteration') 'variant_collection' SubClassOf 'has_part' some 'sequence_alteration' 'variant_collection' EquivalentTo 'sequence_collection' and (http://purl.obolibrary.org/obo/so#has_part some 'sequence_alteration') 'variant_collection' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'sequence_alteration' http://purl.obolibrary.org/obo/SO_0000657 repeat_region 'repeat_region' SubClassOf 'has_part' some 'repeat_unit' 'repeat_region' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'repeat_unit' http://purl.obolibrary.org/obo/SO_0000654 maxicircle_gene 'maxicircle_gene' EquivalentTo 'kinetoplast_gene' and ('part_of' some 'maxicircle') 'maxicircle_gene' SubClassOf 'part_of' some 'maxicircle' 'maxicircle_gene' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'maxicircle' 'maxicircle_gene' EquivalentTo 'kinetoplast_gene' and (http://purl.obolibrary.org/obo/so#part_of some 'maxicircle') http://purl.obolibrary.org/obo/SO_0000651 large_subunit_rRNA 'large_subunit_rRNA' SubClassOf 'derives_from' some 'rRNA_large_subunit_primary_transcript' 'large_subunit_rRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'rRNA_large_subunit_primary_transcript' http://purl.obolibrary.org/obo/SO_0001930 chloroplast_DNA_read 'chloroplast_DNA_read' SubClassOf 'has_origin' some 'chloroplast_DNA' 'chloroplast_DNA_read' EquivalentTo 'read' and ('has_origin' some 'chloroplast_DNA') 'chloroplast_DNA_read' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'chloroplast_DNA' 'chloroplast_DNA_read' EquivalentTo 'read' and (http://purl.obolibrary.org/obo/so#has_origin some 'chloroplast_DNA') http://purl.obolibrary.org/obo/SO_0000609 oligo_U_tail 'oligo_U_tail' SubClassOf 'adjacent_to' some 'guide_RNA' 'oligo_U_tail' SubClassOf http://purl.obolibrary.org/obo/so#adjacent_to some 'guide_RNA' http://purl.obolibrary.org/obo/SO_0001921 mitochondrial_contig 'mitochondrial_contig' EquivalentTo 'contig' and ('has_origin' some 'mitochondrial_sequence') 'mitochondrial_contig' SubClassOf 'has_origin' some 'mitochondrial_sequence' 'mitochondrial_contig' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_sequence' 'mitochondrial_contig' EquivalentTo 'contig' and (http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_sequence') http://purl.obolibrary.org/obo/SO_0001929 mitochondrial_DNA_read 'mitochondrial_DNA_read' SubClassOf 'has_origin' some 'mitochondrial_DNA' 'mitochondrial_DNA_read' EquivalentTo 'read' and ('has_origin' some 'mitochondrial_DNA') 'mitochondrial_DNA_read' SubClassOf http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_DNA' 'mitochondrial_DNA_read' EquivalentTo 'read' and (http://purl.obolibrary.org/obo/so#has_origin some 'mitochondrial_DNA') http://purl.obolibrary.org/obo/SO_0001902 splice_region 'splice_region' SubClassOf 'part_of' some 'primary_transcript' 'splice_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'primary_transcript' http://purl.obolibrary.org/obo/SO_0001905 regional_centromere_outer_repeat_transcript 'regional_centromere_outer_repeat_transcript' EquivalentTo 'primary_transcript' and ('derives_from' some 'regional_centromere_outer_repeat_region') 'regional_centromere_outer_repeat_transcript' SubClassOf 'derives_from' some 'regional_centromere_outer_repeat_region' 'regional_centromere_outer_repeat_transcript' EquivalentTo 'primary_transcript' and (http://purl.obolibrary.org/obo/so#derives_from some 'regional_centromere_outer_repeat_region') 'regional_centromere_outer_repeat_transcript' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'regional_centromere_outer_repeat_region' http://purl.obolibrary.org/obo/SO_0001172 tRNA_region 'tRNA_region' SubClassOf 'part_of' some 'tRNA' 'tRNA_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'tRNA' http://purl.obolibrary.org/obo/SO_0001174 anticodon 'anticodon' SubClassOf 'part_of' some 'anticodon_loop' 'anticodon' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'anticodon_loop' http://purl.obolibrary.org/obo/SO_0001168 NDM3_motif 'NDM3_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'NDM3_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001160 DMv3_motif 'DMv3_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'DMv3_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001161 DMv2_motif 'DMv2_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'DMv2_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001162 MTE 'MTE' SubClassOf 'part_of' some 'RNApol_II_core_promoter' 'MTE' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_core_promoter' http://purl.obolibrary.org/obo/SO_0001163 INR1_motif 'INR1_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'INR1_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001164 DPE1_motif 'DPE1_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'DPE1_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001165 DMv1_motif 'DMv1_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'DMv1_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001166 GAGA_motif 'GAGA_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'GAGA_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001167 NDM2_motif 'NDM2_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'NDM2_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0002004 ARS_consensus_sequence 'ARS_consensus_sequence' SubClassOf 'part_of' some 'ARS' 'ARS_consensus_sequence' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'ARS' http://purl.obolibrary.org/obo/SO_0001158 E_box_motif 'E_box_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'E_box_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001159 DMv5_motif 'DMv5_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'DMv5_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0001156 DRE_motif 'DRE_motif' SubClassOf 'part_of' some 'RNApol_II_promoter' 'DRE_motif' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'RNApol_II_promoter' http://purl.obolibrary.org/obo/SO_0000296 origin_of_replication 'origin_of_replication' SubClassOf 'part_of' some 'replicon' 'origin_of_replication' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'replicon' http://purl.obolibrary.org/obo/SO_0000293 engineered_foreign_repetitive_element 'engineered_foreign_repetitive_element' SubClassOf 'has_quality' some 'foreign' 'engineered_foreign_repetitive_element' EquivalentTo 'repeat_region' and ('has_quality' some 'engineered') and ('has_quality' some 'foreign') 'engineered_foreign_repetitive_element' SubClassOf 'has_quality' some 'engineered' 'engineered_foreign_repetitive_element' EquivalentTo 'repeat_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') 'engineered_foreign_repetitive_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_foreign_repetitive_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' http://purl.obolibrary.org/obo/SO_0002056 intronic_splicing_silencer 'intronic_splicing_silencer' SubClassOf 'part_of' some 'intron' 'intronic_splicing_silencer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'intron' http://purl.obolibrary.org/obo/SO_0001191 TNA_oligo 'TNA_oligo' EquivalentTo 'synthetic_oligo' and ('has_quality' some 'TNA') 'TNA_oligo' SubClassOf 'has_quality' some 'TNA' 'TNA_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'TNA' 'TNA_oligo' EquivalentTo 'synthetic_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'TNA') http://purl.obolibrary.org/obo/SO_0001193 GNA_oligo 'GNA_oligo' EquivalentTo 'synthetic_oligo' and ('has_quality' some 'GNA') 'GNA_oligo' SubClassOf 'has_quality' some 'GNA' 'GNA_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'GNA' 'GNA_oligo' EquivalentTo 'synthetic_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'GNA') http://purl.obolibrary.org/obo/SO_0002041 miR_encoding_vaultRNA_primary_transcript 'miR_encoding_vaultRNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miR_encoding_vaultRNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0001195 R_GNA_oligo 'R_GNA_oligo' EquivalentTo 'GNA_oligo' and ('has_quality' some 'R_GNA') 'R_GNA_oligo' SubClassOf 'has_quality' some 'R_GNA' 'R_GNA_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'R_GNA' 'R_GNA_oligo' EquivalentTo 'GNA_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'R_GNA') http://purl.obolibrary.org/obo/SO_0002043 miR_encoding_Y_RNA_primary_transcript 'miR_encoding_Y_RNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miR_encoding_Y_RNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0001197 S_GNA_oligo 'S_GNA_oligo' SubClassOf 'has_quality' some 'S_GNA' 'S_GNA_oligo' EquivalentTo 'GNA_oligo' and ('has_quality' some 'S_GNA') 'S_GNA_oligo' EquivalentTo 'GNA_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'S_GNA') 'S_GNA_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'S_GNA' http://purl.obolibrary.org/obo/SO_0002037 miR_encoding_tRNA_primary_transcript 'miR_encoding_tRNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miR_encoding_tRNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0002039 miR_encoding_shRNA_primary_transcript 'miR_encoding_shRNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miR_encoding_shRNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0001180 AU_rich_element 'AU_rich_element' SubClassOf 'part_of' some 'three_prime_UTR' 'AU_rich_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_UTR' http://purl.obolibrary.org/obo/SO_0001181 Bruno_response_element 'Bruno_response_element' SubClassOf 'part_of' some 'three_prime_UTR' 'Bruno_response_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'three_prime_UTR' http://purl.obolibrary.org/obo/SO_0001182 iron_responsive_element 'iron_responsive_element' SubClassOf 'part_of' some 'UTR' 'iron_responsive_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'UTR' http://purl.obolibrary.org/obo/SO_0002032 moR 'moR' SubClassOf 'part_of' some 'pre_miRNA' 'moR' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0002033 loR 'loR' SubClassOf 'part_of' some 'pre_miRNA' 'loR' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0002034 miR_encoding_snoRNA_primary_transcript 'miR_encoding_snoRNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miR_encoding_snoRNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0001189 LNA_oligo 'LNA_oligo' SubClassOf 'has_quality' some 'LNA' 'LNA_oligo' EquivalentTo 'synthetic_oligo' and ('has_quality' some 'LNA') 'LNA_oligo' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'LNA' 'LNA_oligo' EquivalentTo 'synthetic_oligo' and (http://purl.obolibrary.org/obo/so#has_quality some 'LNA') http://purl.obolibrary.org/obo/SO_0002036 miR_encoding_lncRNA_primary_transcript 'miR_encoding_lncRNA_primary_transcript' SubClassOf 'has_part' some 'pre_miRNA' 'miR_encoding_lncRNA_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0000240 chromosome_variation 'chromosome_variation' SubClassOf 'part_of' some 'chromosomally_aberrant_genome' 'chromosome_variation' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'chromosomally_aberrant_genome' http://purl.obolibrary.org/obo/SO_0000233 mature_transcript 'mature_transcript' SubClassOf 'derives_from' some 'primary_transcript' 'mature_transcript' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'primary_transcript' http://purl.obolibrary.org/obo/SO_0000693 gene_with_recoded_mRNA 'gene_with_recoded_mRNA' EquivalentTo 'protein_coding_gene' and ('has_quality' some 'recoded') 'gene_with_recoded_mRNA' SubClassOf 'has_quality' some 'recoded' 'gene_with_recoded_mRNA' EquivalentTo 'protein_coding_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'recoded') 'gene_with_recoded_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'recoded' http://purl.obolibrary.org/obo/SO_0000692 gene_with_dicistronic_transcript 'gene_with_dicistronic_transcript' EquivalentTo 'gene_with_polycistronic_transcript' and ('transcribed_to' some 'dicistronic_transcript') 'gene_with_dicistronic_transcript' SubClassOf 'transcribed_to' some 'dicistronic_transcript' 'gene_with_dicistronic_transcript' EquivalentTo 'gene_with_polycistronic_transcript' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'dicistronic_transcript') 'gene_with_dicistronic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'dicistronic_transcript' http://purl.obolibrary.org/obo/SO_0000690 gene_with_polycistronic_transcript 'gene_with_polycistronic_transcript' SubClassOf 'transcribed_to' some 'polycistronic_transcript' 'gene_with_polycistronic_transcript' EquivalentTo 'gene' and ('transcribed_to' some 'polycistronic_transcript') 'gene_with_polycistronic_transcript' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'polycistronic_transcript' 'gene_with_polycistronic_transcript' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'polycistronic_transcript') http://purl.obolibrary.org/obo/SO_0000698 gene_with_stop_codon_redefined_as_pyrrolysine 'gene_with_stop_codon_redefined_as_pyrrolysine' SubClassOf 'has_part' some 'stop_codon_redefined_as_pyrrolysine' 'gene_with_stop_codon_redefined_as_pyrrolysine' EquivalentTo 'gene_with_recoded_mRNA' and ('has_part' some 'stop_codon_redefined_as_pyrrolysine') 'gene_with_stop_codon_redefined_as_pyrrolysine' EquivalentTo 'gene_with_recoded_mRNA' and (http://purl.obolibrary.org/obo/so#has_part some 'stop_codon_redefined_as_pyrrolysine') 'gene_with_stop_codon_redefined_as_pyrrolysine' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'stop_codon_redefined_as_pyrrolysine' http://purl.obolibrary.org/obo/SO_0000697 gene_with_stop_codon_read_through 'gene_with_stop_codon_read_through' EquivalentTo 'gene_with_recoded_mRNA' and ('has_part' some 'stop_codon_read_through') 'gene_with_stop_codon_read_through' SubClassOf 'has_part' some 'stop_codon_read_through' 'gene_with_stop_codon_read_through' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'stop_codon_read_through' 'gene_with_stop_codon_read_through' EquivalentTo 'gene_with_recoded_mRNA' and (http://purl.obolibrary.org/obo/so#has_part some 'stop_codon_read_through') http://purl.obolibrary.org/obo/SO_0000287 fusion_gene 'fusion_gene' SubClassOf 'has_quality' some 'fusion' 'fusion_gene' EquivalentTo 'gene' and ('has_quality' some 'fusion') 'fusion_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'fusion') 'fusion_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'fusion' http://purl.obolibrary.org/obo/SO_0000286 long_terminal_repeat 'long_terminal_repeat' SubClassOf 'part_of' some 'LTR_retrotransposon' 'long_terminal_repeat' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'LTR_retrotransposon' http://purl.obolibrary.org/obo/SO_0000285 foreign_gene 'foreign_gene' EquivalentTo 'gene' and ('has_quality' some 'foreign') 'foreign_gene' SubClassOf 'has_quality' some 'foreign' 'foreign_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') 'foreign_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' http://purl.obolibrary.org/obo/SO_0000283 engineered_foreign_transposable_element_gene 'engineered_foreign_transposable_element_gene' SubClassOf 'has_quality' some 'foreign' 'engineered_foreign_transposable_element_gene' EquivalentTo 'transposable_element_gene' and ('has_quality' some 'engineered') and ('has_quality' some 'foreign') 'engineered_foreign_transposable_element_gene' SubClassOf 'has_quality' some 'engineered' 'engineered_foreign_transposable_element_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' 'engineered_foreign_transposable_element_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_foreign_transposable_element_gene' EquivalentTo 'transposable_element_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') http://purl.obolibrary.org/obo/SO_0000282 mRNA_with_minus_1_frameshift 'mRNA_with_minus_1_frameshift' SubClassOf 'has_quality' some 'minus_1_frameshift' 'mRNA_with_minus_1_frameshift' EquivalentTo 'mRNA_with_frameshift' and ('has_quality' some 'minus_1_frameshift') 'mRNA_with_minus_1_frameshift' EquivalentTo 'mRNA_with_frameshift' and (http://purl.obolibrary.org/obo/so#has_quality some 'minus_1_frameshift') 'mRNA_with_minus_1_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'minus_1_frameshift' http://purl.obolibrary.org/obo/SO_0000281 engineered_foreign_gene 'engineered_foreign_gene' SubClassOf 'has_quality' some 'engineered' 'engineered_foreign_gene' SubClassOf 'has_quality' some 'foreign' 'engineered_foreign_gene' EquivalentTo 'engineered_gene' and ('has_quality' some 'engineered') and ('has_quality' some 'foreign') 'engineered_foreign_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' 'engineered_foreign_gene' EquivalentTo 'engineered_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') 'engineered_foreign_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' http://purl.obolibrary.org/obo/SO_0000280 engineered_gene 'engineered_gene' SubClassOf 'has_quality' some 'engineered' 'engineered_gene' EquivalentTo 'gene' and ('has_quality' some 'engineered') 'engineered_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_gene' EquivalentTo 'gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_0000288 engineered_fusion_gene 'engineered_fusion_gene' EquivalentTo 'fusion_gene' and ('has_quality' some 'engineered') 'engineered_fusion_gene' SubClassOf 'has_quality' some 'engineered' 'engineered_fusion_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_fusion_gene' EquivalentTo 'fusion_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_0000276 miRNA 'miRNA' SubClassOf 'part_of' some 'pre_miRNA' 'miRNA' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pre_miRNA' http://purl.obolibrary.org/obo/SO_0000275 snoRNA 'snoRNA' SubClassOf 'derives_from' some 'snoRNA_primary_transcript' 'snoRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'snoRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000274 snRNA 'snRNA' SubClassOf 'derives_from' some 'snRNA_primary_transcript' 'snRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'snRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000273 valyl_tRNA 'valyl_tRNA' SubClassOf 'derives_from' some 'valine_tRNA_primary_transcript' 'valyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'valine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000272 tyrosyl_tRNA 'tyrosyl_tRNA' SubClassOf 'derives_from' some 'tyrosine_tRNA_primary_transcript' 'tyrosyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'tyrosine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000271 tryptophanyl_tRNA 'tryptophanyl_tRNA' SubClassOf 'derives_from' some 'tryptophan_tRNA_primary_transcript' 'tryptophanyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'tryptophan_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000270 threonyl_tRNA 'threonyl_tRNA' SubClassOf 'derives_from' some 'threonine_tRNA_primary_transcript' 'threonyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'threonine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000279 transcript_bound_by_protein 'transcript_bound_by_protein' EquivalentTo 'transcript' and ('has_quality' some 'bound_by_protein') 'transcript_bound_by_protein' SubClassOf 'has_quality' some 'bound_by_protein' 'transcript_bound_by_protein' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'bound_by_protein' 'transcript_bound_by_protein' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'bound_by_protein') http://purl.obolibrary.org/obo/SO_0000278 transcript_bound_by_nucleic_acid 'transcript_bound_by_nucleic_acid' EquivalentTo 'transcript' and ('has_quality' some 'bound_by_nucleic_acid') 'transcript_bound_by_nucleic_acid' SubClassOf 'has_quality' some 'bound_by_nucleic_acid' 'transcript_bound_by_nucleic_acid' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'bound_by_nucleic_acid' 'transcript_bound_by_nucleic_acid' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'bound_by_nucleic_acid') http://purl.obolibrary.org/obo/SO_0000265 lysyl_tRNA 'lysyl_tRNA' SubClassOf 'derives_from' some 'lysine_tRNA_primary_transcript' 'lysyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'lysine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000264 leucyl_tRNA 'leucyl_tRNA' SubClassOf 'derives_from' some 'leucine_tRNA_primary_transcript' 'leucyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'leucine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000263 isoleucyl_tRNA 'isoleucyl_tRNA' SubClassOf 'derives_from' some 'isoleucine_tRNA_primary_transcript' 'isoleucyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'isoleucine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000262 histidyl_tRNA 'histidyl_tRNA' SubClassOf 'derives_from' some 'histidine_tRNA_primary_transcript' 'histidyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'histidine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000261 glycyl_tRNA 'glycyl_tRNA' SubClassOf 'derives_from' some 'glycine_tRNA_primary_transcript' 'glycyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'glycine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000260 glutamyl_tRNA 'glutamyl_tRNA' SubClassOf 'derives_from' some 'glutamine_tRNA_primary_transcript' 'glutamyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'glutamine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000269 seryl_tRNA 'seryl_tRNA' SubClassOf 'derives_from' some 'serine_tRNA_primary_transcript' 'seryl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'serine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000268 prolyl_tRNA 'prolyl_tRNA' SubClassOf 'derives_from' some 'proline_tRNA_primary_transcript' 'prolyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'proline_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000267 phenylalanyl_tRNA 'phenylalanyl_tRNA' SubClassOf 'derives_from' some 'phenylalanine_tRNA_primary_transcript' 'phenylalanyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'phenylalanine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000266 methionyl_tRNA 'methionyl_tRNA' SubClassOf 'derives_from' some 'methionine_tRNA_primary_transcript' 'methionyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'methionine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000254 alanyl_tRNA 'alanyl_tRNA' SubClassOf 'derives_from' some 'alanine_tRNA_primary_transcript' 'alanyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'alanine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000253 tRNA 'tRNA' SubClassOf 'derives_from' some 'tRNA_primary_transcript' 'tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000252 rRNA 'rRNA' SubClassOf 'derives_from' some 'rRNA_primary_transcript' 'rRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'rRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0001104 catalytic_residue 'catalytic_residue' SubClassOf 'part_of' some 'polypeptide_catalytic_motif' 'catalytic_residue' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'polypeptide_catalytic_motif' http://purl.obolibrary.org/obo/SO_0000259 glutaminyl_tRNA 'glutaminyl_tRNA' SubClassOf 'derives_from' some 'glutamic_acid_tRNA_primary_transcript' 'glutaminyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'glutamic_acid_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000258 cysteinyl_tRNA 'cysteinyl_tRNA' SubClassOf 'derives_from' some 'cysteine_tRNA_primary_transcript' 'cysteinyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'cysteine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000257 aspartyl_tRNA 'aspartyl_tRNA' SubClassOf 'derives_from' some 'aspartic_acid_tRNA_primary_transcript' 'aspartyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'aspartic_acid_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000256 asparaginyl_tRNA 'asparaginyl_tRNA' SubClassOf 'derives_from' some 'asparagine_tRNA_primary_transcript' 'asparaginyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'asparagine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0100011 cleaved_peptide_region 'cleaved_peptide_region' SubClassOf 'part_of' some 'immature_peptide_region' 'cleaved_peptide_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'immature_peptide_region' http://purl.obolibrary.org/obo/SO_0100014 n_terminal_region 'n_terminal_region' SubClassOf 'part_of' some 'signal_peptide' 'n_terminal_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'signal_peptide' http://purl.obolibrary.org/obo/SO_0100015 c_terminal_region 'c_terminal_region' SubClassOf 'part_of' some 'signal_peptide' 'c_terminal_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'signal_peptide' http://purl.obolibrary.org/obo/SO_0100016 central_hydrophobic_region_of_signal_peptide 'central_hydrophobic_region_of_signal_peptide' SubClassOf 'part_of' some 'signal_peptide' 'central_hydrophobic_region_of_signal_peptide' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'signal_peptide' http://purl.obolibrary.org/obo/SO_0000766 pyrrolysyl_tRNA 'pyrrolysyl_tRNA' SubClassOf 'derives_from' some 'pyrrolysine_tRNA_primary_transcript' 'pyrrolysyl_tRNA' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'pyrrolysine_tRNA_primary_transcript' http://purl.obolibrary.org/obo/SO_0000755 plasmid_vector 'plasmid_vector' SubClassOf 'derives_from' some 'plasmid' 'plasmid_vector' EquivalentTo 'replicon' and ('derives_from' some 'plasmid') 'plasmid_vector' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'plasmid' 'plasmid_vector' EquivalentTo 'replicon' and (http://purl.obolibrary.org/obo/so#derives_from some 'plasmid') http://purl.obolibrary.org/obo/SO_0000753 clone_insert 'clone_insert' SubClassOf 'part_of' some 'clone' 'clone_insert' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'clone' http://purl.obolibrary.org/obo/SO_0000752 gene_group_regulatory_region 'gene_group_regulatory_region' SubClassOf 'member_of' some 'gene_group' 'gene_group_regulatory_region' SubClassOf http://purl.obolibrary.org/obo/so#member_of some 'gene_group' http://purl.obolibrary.org/obo/SO_0000741 kinetoplast 'kinetoplast' SubClassOf 'has_part' some 'minicircle' 'kinetoplast' EquivalentTo 'sequence_collection' and ('has_part' some 'maxicircle') and ('has_part' some 'minicircle') 'kinetoplast' SubClassOf 'has_part' some 'maxicircle' 'kinetoplast' EquivalentTo 'sequence_collection' and (http://purl.obolibrary.org/obo/so#has_part some 'maxicircle') and (http://purl.obolibrary.org/obo/so#has_part some 'minicircle') 'kinetoplast' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'minicircle' 'kinetoplast' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'maxicircle' http://purl.obolibrary.org/obo/SO_0000734 exemplar_mRNA 'exemplar_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'exemplar') 'exemplar_mRNA' SubClassOf 'has_quality' some 'exemplar' 'exemplar_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'exemplar' 'exemplar_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'exemplar') http://purl.obolibrary.org/obo/SO_0000730 gap 'gap' SubClassOf 'part_of' some 'sequence_assembly' 'gap' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'sequence_assembly' http://purl.obolibrary.org/obo/SO_0000320 intronic_splice_enhancer 'intronic_splice_enhancer' SubClassOf 'part_of' some 'spliceosomal_intron_region' 'intronic_splice_enhancer' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'spliceosomal_intron_region' http://purl.obolibrary.org/obo/SO_0001653 retinoic_acid_responsive_element 'retinoic_acid_responsive_element' SubClassOf 'part_of' some 'promoter' 'retinoic_acid_responsive_element' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'promoter' http://purl.obolibrary.org/obo/SO_0001659 promoter_element 'promoter_element' SubClassOf 'overlaps' some 'TF_binding_site' 'promoter_element' SubClassOf http://purl.obolibrary.org/obo/so#overlaps some 'TF_binding_site' http://purl.obolibrary.org/obo/SO_0000329 mRNA_with_plus_2_frameshift 'mRNA_with_plus_2_frameshift' SubClassOf 'has_quality' some 'plus_2_framshift' 'mRNA_with_plus_2_frameshift' EquivalentTo 'mRNA_with_frameshift' and ('has_quality' some 'plus_2_framshift') 'mRNA_with_plus_2_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'plus_2_framshift' 'mRNA_with_plus_2_frameshift' EquivalentTo 'mRNA_with_frameshift' and (http://purl.obolibrary.org/obo/so#has_quality some 'plus_2_framshift') http://purl.obolibrary.org/obo/SO_1001187 alternatively_spliced_transcript 'alternatively_spliced_transcript' SubClassOf 'has_quality' some 'alternatively_spliced' 'alternatively_spliced_transcript' EquivalentTo 'transcript' and ('has_quality' some 'alternatively_spliced') 'alternatively_spliced_transcript' EquivalentTo 'transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'alternatively_spliced') 'alternatively_spliced_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'alternatively_spliced' http://purl.obolibrary.org/obo/SO_0000321 mRNA_with_plus_1_frameshift 'mRNA_with_plus_1_frameshift' SubClassOf 'has_quality' some 'plus_1_frameshift' 'mRNA_with_plus_1_frameshift' EquivalentTo 'mRNA_with_frameshift' and ('has_quality' some 'plus_1_frameshift') 'mRNA_with_plus_1_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'plus_1_frameshift' 'mRNA_with_plus_1_frameshift' EquivalentTo 'mRNA_with_frameshift' and (http://purl.obolibrary.org/obo/so#has_quality some 'plus_1_frameshift') http://purl.obolibrary.org/obo/SO_0001644 targeting_vector 'targeting_vector' SubClassOf 'has_part' some 'homologous_region' 'targeting_vector' EquivalentTo 'vector_replicon' and ('has_part' some 'homologous_region') and ('has_quality' some 'engineered') 'targeting_vector' SubClassOf 'has_quality' some 'engineered' 'targeting_vector' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'targeting_vector' EquivalentTo 'vector_replicon' and (http://purl.obolibrary.org/obo/so#has_part some 'homologous_region') and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') 'targeting_vector' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'homologous_region' http://purl.obolibrary.org/obo/SO_0000317 cDNA_clone 'cDNA_clone' SubClassOf 'has_quality' some 'cDNA' 'cDNA_clone' EquivalentTo 'clone' and ('has_quality' some 'cDNA') 'cDNA_clone' EquivalentTo 'clone' and (http://purl.obolibrary.org/obo/so#has_quality some 'cDNA') 'cDNA_clone' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'cDNA' http://purl.obolibrary.org/obo/SO_0000799 engineered_foreign_transposable_element 'engineered_foreign_transposable_element' SubClassOf 'has_quality' some 'foreign' 'engineered_foreign_transposable_element' SubClassOf 'has_quality' some 'engineered' 'engineered_foreign_transposable_element' EquivalentTo 'transposable_element' and ('has_quality' some 'engineered') and ('has_quality' some 'foreign') 'engineered_foreign_transposable_element' EquivalentTo 'transposable_element' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') 'engineered_foreign_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_foreign_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' http://purl.obolibrary.org/obo/SO_1001196 cryptogene 'cryptogene' SubClassOf 'has_quality' some 'cryptic' 'cryptogene' EquivalentTo 'maxicircle_gene' and ('has_quality' some 'cryptic') 'cryptogene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'cryptic' 'cryptogene' EquivalentTo 'maxicircle_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'cryptic') http://purl.obolibrary.org/obo/SO_0000798 engineered_transposable_element 'engineered_transposable_element' EquivalentTo 'transposable_element' and ('has_quality' some 'engineered') 'engineered_transposable_element' SubClassOf 'has_quality' some 'engineered' 'engineered_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_transposable_element' EquivalentTo 'transposable_element' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_1001197 dicistronic_primary_transcript 'dicistronic_primary_transcript' SubClassOf 'has_quality' some 'dicistronic' 'dicistronic_primary_transcript' EquivalentTo 'primary_transcript' and ('has_quality' some 'dicistronic') 'dicistronic_primary_transcript' EquivalentTo 'primary_transcript' and (http://purl.obolibrary.org/obo/so#has_quality some 'dicistronic') 'dicistronic_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'dicistronic' http://purl.obolibrary.org/obo/SO_0000797 natural_transposable_element 'natural_transposable_element' SubClassOf 'has_quality' some 'natural' 'natural_transposable_element' EquivalentTo 'transposable_element' and ('has_quality' some 'natural') 'natural_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'natural' 'natural_transposable_element' EquivalentTo 'transposable_element' and (http://purl.obolibrary.org/obo/so#has_quality some 'natural') http://purl.obolibrary.org/obo/SO_0000796 transgenic_transposable_element 'transgenic_transposable_element' SubClassOf 'derives_from' some 'clone' 'transgenic_transposable_element' SubClassOf 'has_quality' some 'transgenic' 'transgenic_transposable_element' EquivalentTo 'transposable_element' and ('derives_from' some 'clone') and ('has_quality' some 'transgenic') 'transgenic_transposable_element' EquivalentTo 'transposable_element' and (http://purl.obolibrary.org/obo/so#derives_from some 'clone') and (http://purl.obolibrary.org/obo/so#has_quality some 'transgenic') 'transgenic_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#derives_from some 'clone' 'transgenic_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'transgenic' http://purl.obolibrary.org/obo/SO_0000795 rescue_mini_gene 'rescue_mini_gene' SubClassOf 'has_quality' some 'rescue' 'rescue_mini_gene' EquivalentTo 'mini_gene' and ('has_quality' some 'rescue') 'rescue_mini_gene' EquivalentTo 'mini_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'rescue') 'rescue_mini_gene' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'rescue' http://purl.obolibrary.org/obo/SO_0000794 engineered_rescue_region 'engineered_rescue_region' SubClassOf 'has_quality' some 'engineered' 'engineered_rescue_region' EquivalentTo 'rescue_region' and ('has_quality' some 'engineered') 'engineered_rescue_region' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' 'engineered_rescue_region' EquivalentTo 'rescue_region' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') http://purl.obolibrary.org/obo/SO_0000785 cloned_region 'cloned_region' SubClassOf 'part_of' some 'clone_insert' 'cloned_region' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'clone_insert' http://purl.obolibrary.org/obo/SO_0000779 engineered_episome 'engineered_episome' EquivalentTo 'episome' and ('has_quality' some 'engineered') 'engineered_episome' SubClassOf 'has_quality' some 'engineered' 'engineered_episome' EquivalentTo 'episome' and (http://purl.obolibrary.org/obo/so#has_quality some 'engineered') 'engineered_episome' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'engineered' http://purl.obolibrary.org/obo/SO_0002087 pseudogenic_CDS 'pseudogenic_CDS' SubClassOf 'part_of' some 'pseudogenic_transcript' 'pseudogenic_CDS' SubClassOf http://purl.obolibrary.org/obo/so#part_of some 'pseudogenic_transcript' http://purl.obolibrary.org/obo/SO_0000727 CRM 'CRM' SubClassOf 'has_part' some 'TF_binding_site' 'CRM' EquivalentTo 'transcriptional_cis_regulatory_region' and ('has_part' some 'TF_binding_site') 'CRM' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'TF_binding_site' 'CRM' EquivalentTo 'transcriptional_cis_regulatory_region' and (http://purl.obolibrary.org/obo/so#has_part some 'TF_binding_site') http://purl.obolibrary.org/obo/SO_0000722 gene_with_dicistronic_mRNA 'gene_with_dicistronic_mRNA' EquivalentTo 'gene_with_dicistronic_transcript' and ('transcribed_to' some 'dicistronic_mRNA') 'gene_with_dicistronic_mRNA' SubClassOf 'transcribed_to' some 'dicistronic_mRNA' 'gene_with_dicistronic_mRNA' EquivalentTo 'gene_with_dicistronic_transcript' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'dicistronic_mRNA') 'gene_with_dicistronic_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'dicistronic_mRNA' http://purl.obolibrary.org/obo/SO_0000721 gene_with_dicistronic_primary_transcript 'gene_with_dicistronic_primary_transcript' EquivalentTo 'gene_with_dicistronic_transcript' and ('transcribed_to' some 'dicistronic_primary_transcript') 'gene_with_dicistronic_primary_transcript' SubClassOf 'transcribed_to' some 'dicistronic_primary_transcript' 'gene_with_dicistronic_primary_transcript' SubClassOf http://purl.obolibrary.org/obo/so#transcribed_to some 'dicistronic_primary_transcript' 'gene_with_dicistronic_primary_transcript' EquivalentTo 'gene_with_dicistronic_transcript' and (http://purl.obolibrary.org/obo/so#transcribed_to some 'dicistronic_primary_transcript') http://purl.obolibrary.org/obo/SO_0000720 foreign_transposable_element 'foreign_transposable_element' SubClassOf 'has_quality' some 'foreign' 'foreign_transposable_element' EquivalentTo 'transposable_element' and ('has_quality' some 'foreign') 'foreign_transposable_element' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'foreign' 'foreign_transposable_element' EquivalentTo 'transposable_element' and (http://purl.obolibrary.org/obo/so#has_quality some 'foreign') http://purl.obolibrary.org/obo/SO_0000716 dicistronic_mRNA 'dicistronic_mRNA' SubClassOf 'has_quality' some 'dicistronic' 'dicistronic_mRNA' EquivalentTo 'mRNA' and ('has_quality' some 'dicistronic') 'dicistronic_mRNA' EquivalentTo 'mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'dicistronic') 'dicistronic_mRNA' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'dicistronic' http://purl.obolibrary.org/obo/SO_0000712 gene_with_transcript_with_translational_frameshift 'gene_with_transcript_with_translational_frameshift' SubClassOf 'has_quality' some 'translationally_frameshifted' 'gene_with_transcript_with_translational_frameshift' EquivalentTo 'gene_with_recoded_mRNA' and ('has_quality' some 'translationally_frameshifted') 'gene_with_transcript_with_translational_frameshift' EquivalentTo 'gene_with_recoded_mRNA' and (http://purl.obolibrary.org/obo/so#has_quality some 'translationally_frameshifted') 'gene_with_transcript_with_translational_frameshift' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'translationally_frameshifted' http://purl.obolibrary.org/obo/SO_0000711 gene_with_mRNA_recoded_by_translational_bypass 'gene_with_mRNA_recoded_by_translational_bypass' SubClassOf 'has_quality' some 'recoded_by_translational_bypass' 'gene_with_mRNA_recoded_by_translational_bypass' EquivalentTo 'protein_coding_gene' and ('has_quality' some 'recoded_by_translational_bypass') 'gene_with_mRNA_recoded_by_translational_bypass' SubClassOf http://purl.obolibrary.org/obo/so#has_quality some 'recoded_by_translational_bypass' 'gene_with_mRNA_recoded_by_translational_bypass' EquivalentTo 'protein_coding_gene' and (http://purl.obolibrary.org/obo/so#has_quality some 'recoded_by_translational_bypass') http://purl.obolibrary.org/obo/SO_0000710 gene_with_stop_codon_redefined_as_selenocysteine 'gene_with_stop_codon_redefined_as_selenocysteine' EquivalentTo 'gene_with_stop_codon_read_through' and ('has_part' some 'stop_codon_redefined_as_selenocysteine') 'gene_with_stop_codon_redefined_as_selenocysteine' SubClassOf 'has_part' some 'stop_codon_redefined_as_selenocysteine' 'gene_with_stop_codon_redefined_as_selenocysteine' EquivalentTo 'gene_with_stop_codon_read_through' and (http://purl.obolibrary.org/obo/so#has_part some 'stop_codon_redefined_as_selenocysteine') 'gene_with_stop_codon_redefined_as_selenocysteine' SubClassOf http://purl.obolibrary.org/obo/so#has_part some 'stop_codon_redefined_as_selenocysteine' http://purl.obolibrary.org/obo/SO_0000704 gene 'gene' SubClassOf 'member_of' some 'gene_group' 'gene' SubClassOf http://purl.obolibrary.org/obo/so#member_of some 'gene_group' http://purl.obolibrary.org/obo/SO_0002158 Mat3M 'Mat3M' SubClassOf 'silent_mating_type_cassette_array' http://purl.obolibrary.org/obo/SO_0002157 Mat2P 'Mat2P' SubClassOf 'silent_mating_type_cassette_array'