77
106
0
http://purl.org/net/SMARTprotocol#DenaturationReaction
denaturation reaction
'denaturation reaction' SubClassOf http://purl.obolibrary.org/obo/BFO_0000061 some 'precipitation reaction'
'denaturation reaction' SubClassOf http://purl.obolibrary.org/obo/BFO_0000062 some 'cell disruption'
'denaturation reaction' SubClassOf 'part of' some 'nucleic acid extraction protocol'
http://purl.obolibrary.org/obo/CHEBI_62947
ammonium acetate
'ammonium acetate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/CHEBI_62946
ammonium sulfate
'ammonium sulfate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://www.ifomis.org/bfo/1.1#Entity
entity
'entity' EquivalentTo 'continuant' or http://www.ifomis.org/bfo/1.1/span#Occurrent
http://purl.obolibrary.org/obo/CHEBI_9177
sodium deoxycholate
'sodium deoxycholate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_53426
polysorbate 80
'polysorbate 80' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_53424
polysorbate 20
'polysorbate 20' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_53423
polysorbate 40
'polysorbate 40' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://www.ebi.ac.uk/efo/EFO_0004964
total RNA
'total RNA' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.obolibrary.org/obo/CHEBI_41218
mercaptoethanol
'mercaptoethanol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://www.ifomis.org/bfo/1.1/snap#Continuant
continuant
'continuant' DisjointWith http://www.ifomis.org/bfo/1.1/span#Occurrent
http://purl.org/net/SMARTprotocol#N-PhenacylthiazoliumBromide
N-phenacylthiazolium bromide
'N-phenacylthiazolium bromide' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.org/net/SMARTprotocol#PrecipitationReaction
precipitation reaction
'precipitation reaction' SubClassOf 'part of' some 'nucleic acid extraction protocol'
'precipitation reaction' SubClassOf http://purl.obolibrary.org/obo/BFO_0000062 some 'denaturation reaction'
'precipitation reaction' SubClassOf http://purl.obolibrary.org/obo/BFO_0000061 some http://purl.org/net/SMARTprotocol#WashingNucleicAcids
http://purl.obolibrary.org/obo/CHEBI_32954
sodium acetate
'sodium acetate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.org/net/SMARTprotocol#BufferAP2
buffer AP2
'buffer AP2' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.bioontology.org/ontology/MSH/D004864
equipment and supplies
'equipment and supplies' SubClassOf 'part of' some 'equipment and supplies list'
http://purl.obolibrary.org/obo/CHEBI_9750
Triton X-100
'Triton X-100' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.org/net/SMARTprotocol#GeneSpecificPrimer
gene-specific primer
'gene-specific primer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.org/obo/owl/SO#SO_0000121
forward primer
'forward primer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'PCR amplification'
http://purl.org/net/SMARTprotocol#RNAExtractionProtocol
RNA extraction protocol
'RNA extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some http://purl.org/net/SMARTprotocol#WashingNucleicAcids
'RNA extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'cell disruption'
'RNA extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'precipitation reaction'
'RNA extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'denaturation reaction'
http://purl.org/obo/owl/SO#SO_0000132
reverse primer
'reverse primer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'PCR amplification'
http://purl.obolibrary.org/obo/CHEBI_1418
CHAPS
'CHAPS' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_16325
lithocholic acid
'lithocholic acid' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.obolibrary.org/obo/CHEBI_32029
potassium acetate
'potassium acetate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/CHEBI_26710
sodium chloride
'sodium chloride' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/CHEBI_48607
lithium chloride
'lithium chloride' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.org/net/SMARTprotocol#PhosphateBufferedSaline
phosphate buffered saline
'phosphate buffered saline' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some http://purl.obolibrary.org/obo/ERO_0000376
http://purl.org/net/SMARTprotocol#SaponinReagent
saponin reagent
'saponin reagent' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_16236
ethanol
'ethanol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/CHEBI_16359
cholic acid
'cholic acid' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_33699
messenger RNA
'messenger RNA' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.obolibrary.org/obo/CHEBI_33695
information biomacromolecule
'information biomacromolecule' DisjointWith 'reagent'
http://purl.obolibrary.org/obo/CHEBI_8984
sodium dodecyl sulfate
'sodium dodecyl sulfate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
'sodium dodecyl sulfate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_17790
methanol
'methanol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.org/net/SMARTprotocol#DounceHomogenizer
dounce homogenizer
'dounce homogenizer' SubClassOf 'sample mill'
'dounce homogenizer' SubClassOf http://purl.org/net/SMARTprotocol#Homogenizer
http://purl.obolibrary.org/obo/OBI_0100026
organism
'organism' SubClassOf 'part of' some 'specimen list'
http://purl.org/net/SMARTprotocol#SubcellularProteinFractionationKitforTissues
subcellular protein fractionation kit for tissues
'subcellular protein fractionation kit for tissues' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.org/net/SMARTprotocol#RandomPrimer
random primer
'random primer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.obolibrary.org/obo/CHEBI_32588
potassium chloride
'potassium chloride' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/OBI_0400116
thermal cycler
'thermal cycler' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'PCR amplification'
http://purl.obolibrary.org/obo/OBI_0400114
sonicator
'sonicator' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_16526
carbon dioxide
'carbon dioxide' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some http://purl.org/net/SMARTprotocol#AnimalEuthanizationProcedure
http://purl.org/net/SMARTprotocol#PolyEthyleneGlycolReagent
poly ethylene glycol reagent
'poly ethylene glycol reagent' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.org/net/SMARTprotocol#LysisBuffer
lysis buffer
'lysis buffer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C70830
solution
'solution' DisjointWith 'manufacturer'
http://purl.org/net/SMARTprotocol#SodiumLauroylSarcosinate
Sodium lauroyl sarcosinate
'Sodium lauroyl sarcosinate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
'Sodium lauroyl sarcosinate' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_33893
reagent
'information biomacromolecule' DisjointWith 'reagent'
http://purl.org/net/SMARTprotocol#PhysicalDisruptionEquipmentAndSupplies
physical disruption equipment and supplies
'physical disruption equipment and supplies' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_17992
sucrose
'sucrose' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.org/net/SMARTprotocol#Polyvinylpyrrolidone
polyvinylpyrrolidone
'polyvinylpyrrolidone' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/CHEBI_67097
decyl beta-D-maltopyranoside
'decyl beta-D-maltopyranoside' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.org/net/SMARTprotocol#NucleicAcidExtractionProtocol
nucleic acid extraction protocol
'nucleic acid extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'cell disruption'
'nucleic acid extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some http://purl.org/net/SMARTprotocol#WashingNucleicAcids
'nucleic acid extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'denaturation reaction'
'nucleic acid extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'precipitation reaction'
http://purl.obolibrary.org/obo/REO_0000421
deoxyribonucleoside triphosphate reagent
'deoxyribonucleoside triphosphate reagent' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'PCR amplification'
'deoxyribonucleoside triphosphate reagent' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.obolibrary.org/obo/CHEBI_15882
phenol
'phenol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.bioontology.org/ontology/NCBITAXON/5692
Trypanosoma congolense
'Trypanosoma congolense' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some http://purl.org/net/SMARTprotocol#TrypanosomaExperiment
http://purl.obolibrary.org/obo/CHEBI_17824
propan-2-ol
'propan-2-ol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'precipitation reaction'
http://purl.obolibrary.org/obo/CHEBI_35255
chloroform
'chloroform' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.org/net/SMARTprotocol#PCRBuffer
PCR buffer
'PCR buffer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'PCR amplification'
http://purl.org/net/SMARTprotocol#PotterElvehjemHomogenizer
potter-elvehjem homogenizer
'potter-elvehjem homogenizer' SubClassOf 'sample mill'
'potter-elvehjem homogenizer' SubClassOf http://purl.org/net/SMARTprotocol#Homogenizer
http://purl.org/net/SMARTprotocol#CellDisruption
cell disruption
'cell disruption' SubClassOf http://purl.obolibrary.org/obo/BFO_0000061 some 'denaturation reaction'
'cell disruption' SubClassOf 'part of' some 'nucleic acid extraction protocol'
http://purl.org/net/SMARTprotocol#Dithiothreitol
dithiothreitol
'dithiothreitol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.org/net/SMARTprotocol#OligodTprimer
oligo (dT) primer
'oligo (dT) primer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.obolibrary.org/obo/CHEBI_78708
Nonidet P-40
'Nonidet P-40' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.org/net/SMARTprotocol#SampleMill
sample mill
'sample mill' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.org/net/SMARTprotocol#Manufacturer
manufacturer
'solution' DisjointWith 'manufacturer'
http://purl.org/net/SMARTprotocol#EndopeptidaseK
endopeptidase K
'endopeptidase K' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.obolibrary.org/obo/CHEBI_3567
cetyltrimethylammonium bromide
'cetyltrimethylammonium bromide' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/CHEBI_27729
digitonin
'digitonin' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.org/net/SMARTprotocol#DNAExtractionProtocol
DNA extraction protocol
'DNA extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some 'DNA purification'
'DNA extraction protocol' SubClassOf http://purl.org/net/SMARTprotocol#hasStep some http://purl.org/net/SMARTprotocol#WashingNucleicAcids
http://purl.org/net/SMARTprotocol#TaqPolymerase
taq polymerase
'taq polymerase' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'PCR amplification'
http://purl.obolibrary.org/obo/OBI_0001087
lyophilizer
'lyophilizer' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
http://purl.obolibrary.org/obo/OBI_0000671
sample from organism
'sample from organism' SubClassOf 'derives from' some 'organism'
'sample from organism' SubClassOf 'part of' some 'specimen list'
'sample from organism' SubClassOf 'part of' some 'organism'
http://purl.obolibrary.org/obo/CHEBI_16755
chenodeoxycholic acid
'chenodeoxycholic acid' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'cell disruption'
'chenodeoxycholic acid' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.obolibrary.org/obo/IAO_0000310
document
'document' SubClassOf 'has part' some 'document part'
http://purl.obolibrary.org/obo/CHEBI_63016
nonyl phenoxypolyethoxylethanol
'nonyl phenoxypolyethoxylethanol' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'denaturation reaction'
http://purl.org/net/SMARTprotocol#ReverseTranscriptase
reverse transcriptase
'reverse transcriptase' SubClassOf http://purl.obolibrary.org/obo/RO_0000056 some 'reverse transcription'
http://purl.org/net/SMARTprotocol#PolytronHomogenizer
polytron homogenizer
'polytron homogenizer' SubClassOf 'sample mill'
'polytron homogenizer' SubClassOf http://purl.org/net/SMARTprotocol#Homogenizer
http://purl.obolibrary.org/obo/OBI_0302895
electrocution
'electrocution' SubClassOf 'animal euthanization procedure'
http://semanticscience.org/resource/SIO_000999
procedure
'procedure' SubClassOf 'occurrent'
http://purl.obolibrary.org/obo/OBI_0302899
decapitation
'decapitation' SubClassOf 'animal euthanization procedure'
http://purl.obolibrary.org/obo/OBI_0302898
intentional overdosing
'intentional overdosing' SubClassOf 'animal euthanization procedure'
http://purl.obolibrary.org/obo/OBI_0302897
asphyxiation
'asphyxiation' SubClassOf 'animal euthanization procedure'
http://purl.obolibrary.org/obo/OBI_0302896
cervical dislocation
'cervical dislocation' SubClassOf 'animal euthanization procedure'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_112
equipment setup action
Equipment setup action
'Equipment setup action' SubClassOf 'action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_114
Store
store
'store' SubClassOf 'Command action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_111
Data action
data action
'Data action' SubClassOf 'action'
http://purl.org/net/SMARTprotocol#TenPercentEthanol
10% ethanol
'10% ethanol' SubClassOf 'ethanol solution'
http://purl.org/net/SMARTprotocol#Homogenizer
homogenizer
'homogenizer' SubClassOf 'sample mill'
http://purl.org/net/SMARTprotocol#TrypanosomaExperiment
Trypanosoma experiment
'Trypanosoma experiment' SubClassOf 'has part' some 'animal euthanization procedure'
'Trypanosoma experiment' SubClassOf 'has part' some 'infection procedure'
'Trypanosoma experiment' SubClassOf 'has part' some 'specimen preparation procedure'
'Trypanosoma experiment' SubClassOf 'has part' some 'housing condition procedure'
'Trypanosoma experiment' SubClassOf 'parasitology experiment'
http://purl.org/net/SMARTprotocol#ParasitologyExperiment
parasitology experiment
'parasitology experiment' SubClassOf 'experiment'
http://purl.org/net/SMARTprotocol#Homogenize
homogenize
'homogenize' SubClassOf 'participates in' some 'cell disruption'
'homogenize' SubClassOf 'Mode of category transform'
http://purl.org/net/SMARTprotocol#WashingNucleicAcids
washing nucleic acids
'washing nucleic acids' SubClassOf 'is preceded by' some 'precipitation reaction'
'washing nucleic acids' SubClassOf 'part of' some 'nucleic acid extraction protocol'
'washing nucleic acids' SubClassOf 'protocol instruction'
http://purl.org/net/SMARTprotocol#WashSolution
wash solution
'wash solution' SubClassOf 'participates in' some 'washing nucleic acids'
'wash solution' SubClassOf 'solution'
http://purl.org/net/SMARTprotocol#EnzymaticAmplificationProcedure
enzymatic amplification procedure
'enzymatic amplification procedure' SubClassOf 'laboratory procedure'
http://purl.org/net/SMARTprotocol#RNAExtractionProcedure
RNA extraction procedure
'RNA extraction procedure' SubClassOf 'has protocol' some 'RNA extraction protocol'
'RNA extraction procedure' SubClassOf 'nucleic acid extraction procedure'
http://purl.org/net/SMARTprotocol#AgaroseInLiquidState
agarose in liquid state
'agarose in liquid state' SubClassOf 'liquid state'
http://purl.org/net/SMARTprotocol#NucleicAcidExtractionProcedure
nucleic acid extraction procedure
'nucleic acid extraction procedure' SubClassOf 'laboratory procedure'
http://purl.org/net/SMARTprotocol#AnimalEuthanizationProcedure
animal euthanization procedure
'animal euthanization procedure' SubClassOf 'is preceded by' some 'infection procedure'
'animal euthanization procedure' SubClassOf 'laboratory procedure'
'animal euthanization procedure' SubClassOf 'has protocol' some 'animal euthanization protocol'
http://purl.org/net/SMARTprotocol#Chop
chop
'chop' SubClassOf 'Mode of category transform'
'chop' SubClassOf 'participates in' some 'cell disruption'
http://purl.org/net/SMARTprotocol#EthanolSolution
ethanol solution
'ethanol solution' SubClassOf 'solution'
http://www.ifomis.org/bfo/1.1/span#Occurrent
occurrent
'occurrent' SubClassOf 'entity'
'continuant' DisjointWith 'occurrent'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_47
break
Break
'Break' SubClassOf 'participates in' some 'cell disruption'
'Break' SubClassOf 'Mode of category transform'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_46
mode of category transform
mode of category trnsform
mode of transform
Mode of category transform
'Mode of category transform' SubClassOf 'mode of transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_45
Mix
mix
'mix' SubClassOf 'Mode of combination'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_44
Dissolve
dissolve
'dissolve' SubClassOf 'Mode of combination'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_42
Re-name
re-name
'Re-name' SubClassOf 'Label'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_41
assign name
Assign name
'Assign name' SubClassOf 'Label'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_40
place
Place
'Place' SubClassOf 'Mode of transformation of spatial location'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_49
incubate
Incubate
'incubate' SubClassOf 'Mode of property transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_48
Pierce
pierce
'Pierce' SubClassOf 'Mode of category transform'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_50
heat
Heat
'Heat' SubClassOf 'Mode of property transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_57
Re-suspend
re-suspend
're-suspend' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_56
record
Record
'Record' SubClassOf 'Data action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_55
Remove
remove
'remove' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_54
Wash
wash
'wash' SubClassOf 'participates in' some 'washing nucleic acids'
'wash' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_53
Centrifuge
centrifuge
'Centrifuge' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_52
Streak
streak
'streak' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_51
boil
Boil
'boil' SubClassOf 'Mode of property transformation'
http://purl.org/net/SMARTprotocol#RNAPellet
RNA pellet
'RNA pellet' SubClassOf 'RNA separated by molecular size'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_59
measure
Measure
'measure' SubClassOf 'Data action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_61
Label
label
'Label' SubClassOf 'Data action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_60
Calculate
calculate
'calculate' SubClassOf 'Data action'
http://purl.org/net/SMARTprotocol#SeventyFivePercentEthanol
75% ethanol
'75% ethanol' SubClassOf 'ethanol solution'
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C42790
experiment
'experiment' SubClassOf 'occurrent'
http://purl.org/net/SMARTprotocol#DNAExtractionProcedure
DNA extraction procedure
'DNA extraction procedure' SubClassOf 'has protocol' some 'DNA extraction protocol'
'DNA extraction procedure' SubClassOf 'nucleic acid extraction procedure'
http://purl.bioontology.org/ontology/npo#NPO_1509
gel state
'gel state' SubClassOf 'physical state'
'liquid state' DisjointWith 'gel state'
http://purl.bioontology.org/ontology/npo#NPO_1504
liquid state
'liquid state' SubClassOf 'physical state'
'liquid state' DisjointWith 'gel state'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_13
wait
Wait
'wait' SubClassOf 'mode of time transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_12
Mode of property transformation
mode of property transformation
'Mode of property transformation' SubClassOf 'mode of transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_11
pour
Pour
'Pour' SubClassOf 'Mode of combination'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_19
aspirate
Aspirate
'aspirate' SubClassOf 'mode of separation'
http://purl.bioontology.org/ontology/SNOMEDCT/107733003
Introduction procedure
'Introduction procedure' SubClassOf 'laboratory procedure'
http://purl.bioontology.org/ontology/npo#NPO_888
physical state
'physical state' SubClassOf 'quality'
http://purl.org/net/SMARTprotocol#Grind
grind
'grind' SubClassOf 'participates in' some 'cell disruption'
'grind' SubClassOf 'Mode of category transform'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_25
filter
Filter
'filter' SubClassOf 'remove'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_24
weigh
Weigh
'weigh' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_23
Calibrate
calibrate
'Calibrate' SubClassOf 'Equipment setup action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_22
sterilise
Sterilise
'Sterilise' SubClassOf 'mode of separation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_21
swirl
Swirl
'swirl' SubClassOf 'shake'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_20
shake
Shake
'shake' SubClassOf 'mode of separation'
http://purl.org/net/SMARTprotocol#ReverseTranscriptionPCRProcedure
reverse transcription PCR procedure
'reverse transcription PCR procedure' SubClassOf 'enzymatic amplification procedure'
'reverse transcription PCR procedure' SubClassOf 'has protocol' some 'reverse transcription PCR protocol'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_29
vortex
Vortex
'vortex' SubClassOf 'mix'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_28
connet
Connect
'connet' SubClassOf 'Mode of combination'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_27
discard
Discard
'discard' SubClassOf 'remove'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_26
de-lid
De-lid
'de-lid' SubClassOf 'remove'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_36
mode of transformation of spacial location
Mode of transformation of spatial location
'Mode of transformation of spatial location' SubClassOf 'mode of transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_35
Mode of time transformation
mode of time transformation
'mode of time transformation' SubClassOf 'mode of transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_34
Join
join
'join' SubClassOf 'connet'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_33
seal
Seal
'Seal' SubClassOf 'Cover'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_32
cover
Cover
'Cover' SubClassOf 'Mode of combination'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_31
Inoculate
inoculate
'inoculate' SubClassOf 'Mode of combination'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_30
rotate
Rotate
'rotate' SubClassOf 'mix'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_39
Take
take
'take' SubClassOf 'Mode of transformation of spatial location'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_38
thaw
Thaw
'thaw' SubClassOf 'Mode of property transformation'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_37
ignite
Ignite
'ignite' SubClassOf 'Mode of property transformation'
http://purl.org/net/SMARTprotocol#AgaroseInGelState
agarose in gel state
'agarose in gel state' SubClassOf 'gel state'
http://purl.obolibrary.org/obo/CHEBI_53258
sodium citrate
'sodium citrate' SubClassOf 'organic sodium salt'
http://purl.org/net/SMARTprotocol#ElectrophoresisProcedure
electrophoresis procedure
'electrophoresis procedure' SubClassOf 'is preceded by' some 'polimerase chain reaction procedure'
'electrophoresis procedure' SubClassOf 'laboratory procedure'
'electrophoresis procedure' SubClassOf 'has protocol' some 'electrophoresis protocol'
'electrophoresis procedure' SubClassOf 'is preceded by' some 'nucleic acid extraction procedure'
http://purl.org/net/SMARTprotocol#SpecimenPreparationProcedure
specimen preparation procedure
'specimen preparation procedure' SubClassOf 'is preceded by' some 'animal euthanization procedure'
'specimen preparation procedure' SubClassOf 'has protocol' some 'specimen preparation protocol'
'specimen preparation procedure' SubClassOf 'laboratory procedure'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_1
experiment action
Experiment action
'experiment action' SubClassOf 'action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_2
mode of separation
Mode of separation
'mode of separation' SubClassOf 'experiment action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_3
mode of combination
Mode of combination
'Mode of combination' SubClassOf 'experiment action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_4
mode of transformation
Mode of transformation
'mode of transformation' SubClassOf 'experiment action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_7
Divide
divide
'divide' SubClassOf 'Mode of category transform'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_8
move
Move
'Move' SubClassOf http://www.owl-ontologies.com/Ontology1184060740.owl#has_Part_of only 'Place'
'Move' SubClassOf http://www.owl-ontologies.com/Ontology1184060740.owl#has_Part_of only 'take'
'Move' SubClassOf 'Mode of transformation of spatial location'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_9
add
Add
'Add' SubClassOf 'Mode of combination'
http://purl.org/net/SMARTprotocol#RawDataSet
raw data set
'raw data set' SubClassOf 'data set'
'analyzed data set' DisjointWith 'raw data set'
http://purl.org/net/SMARTprotocol#PCRProgram
PCR program
'PCR program' SubClassOf 'textual entity'
http://purl.org/net/SMARTprotocol#InfectionProcedure
infection procedure
'infection procedure' SubClassOf 'has protocol' some 'infection protocol'
'infection procedure' SubClassOf 'laboratory procedure'
'infection procedure' SubClassOf 'is preceded by' some 'housing condition procedure'
http://purl.org/net/SMARTprotocol#AnalyzedDataSet
analyzed data set
'analyzed data set' DisjointWith 'raw data set'
'analyzed data set' SubClassOf 'data set'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_89
Action
action
'action' SubClassOf 'occurrent'
http://purl.org/net/SMARTprotocol#PolimeraseChainReactionProcedure
polimerase chain reaction procedure
'polimerase chain reaction procedure' SubClassOf 'has protocol' some 'polimerase chain reaction protocol'
'polimerase chain reaction procedure' SubClassOf 'enzymatic amplification procedure'
'polimerase chain reaction procedure' SubClassOf 'is preceded by' some 'DNA extraction procedure'
http://purl.org/net/SMARTprotocol#HousingConditionProcedure
housing condition procedure
'housing condition procedure' SubClassOf 'has protocol' some 'housing condition protocol'
'housing condition procedure' SubClassOf 'laboratory procedure'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_94
go
Go
'Go' SubClassOf 'Command action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_93
Check
check
'check' SubClassOf 'Command action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_92
stop
Stop
'Stop' SubClassOf 'Command action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_91
continue
Continue
'continue' SubClassOf 'Command action'
http://www.owl-ontologies.com/Ontology1184060740.owl#Class_90
command action
Command action
'Command action' SubClassOf 'action'
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C25294
laboratory procedure
'laboratory procedure' SubClassOf 'procedure'
http://purl.obolibrary.org/obo/ERO_0000376
intraperitoneal injection
'intraperitoneal injection' SubClassOf 'participates in' some 'infection procedure'
'intraperitoneal injection' SubClassOf 'injection'
http://purl.org/net/SMARTprotocol#ProteinExtractionProcedure
protein extraction procedure
'protein extraction procedure' SubClassOf 'laboratory procedure'
http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C62218
70% ethanol
'70% ethanol' SubClassOf 'participates in' some 'washing nucleic acids'
'70% ethanol' SubClassOf 'ethanol solution'
http://purl.bioontology.org/ontology/SNOMEDCT/59108006
Injection
injection
'injection' SubClassOf 'Introduction procedure'