format-version: 1.2 date: 26:07:2010 17:05 saved-by: wasiladahdul auto-generated-by: OBO-Edit 2.1-beta2 synonymtypedef: PLURAL "PLURAL" default-namespace: teleost_anatomy namespace-id-rule: * TAO:$sequence(7,0,9999999)$ [Term] id: TAO:0000000 name: Brachet's cleft def: "The visible division between epiblast and hypoblast in the gastrula. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0000001 name: Kupffer's vesicle def: "Small but distinctive epithelial sac containing fluid, located midventrally posterior to the yolk cell or its extension, and transiently present during most of the segmentation period. Kimmel et al, 1995. Kupffer's vesicle has been compared to the mouse embryonic node. Drummond et al, 2005." [ZFIN:curator] relationship: develops_from TAO:0000023 ! forerunner cell group relationship: OBO_REL:part_of TAO:0000077 ! tail bud [Term] id: TAO:0000003 name: adaxial cell synonym: "adaxial cells" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000279 ! segmental plate [Term] id: TAO:0000004 name: anterior axial hypoblast synonym: "pre-polster" EXACT [ZFIN:ZDB-PUB-051019-5] relationship: OBO_REL:part_of TAO:0001378 ! axial hypoblast [Term] id: TAO:0000005 name: artery synonym: "arterial system" EXACT [] is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0000006 name: ball def: "The anterior round region of the yolk cell present after the yolk extension forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk ball" EXACT [ZFIN:ZDB-PUB-961014-576] relationship: OBO_REL:part_of TAO:0000084 ! yolk [Term] id: TAO:0000007 name: blood def: "A complex mixture of cells suspended in a liquid matrix that delivers nutrients to cells and removes wastes. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] relationship: OBO_REL:part_of TAO:0005023 ! hematopoietic system [Term] id: TAO:0000008 name: brain def: "Cavitated compound organ which is comprised of gray and white matter and surrounds the cerebral ventricular system." [ZFIN:curator] is_a: TAO:0001490 ! cavitated compound organ relationship: develops_from TAO:0001135 ! neural tube relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0000009 name: cardiac ventricle def: "One of four heart chambers." [ZFIN:curator] synonym: "ventricle" EXACT [] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0000010 name: cardiovascular system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000011 name: caudal artery def: "Extension of the dorsal aorta in the tail. Kimmel et al, 1995." [ZFIN:curator] synonym: "CA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0001073 ! axial vasculature relationship: OBO_REL:part_of TAO:0005037 ! tail vasculature [Term] id: TAO:0000012 name: central nervous system def: "The brain and spinal cord. Kimmel et al, 1995." [ZFIN:curator] synonym: "cns" EXACT [] is_a: TAO:0000396 ! nervous system relationship: develops_from TAO:0000063 ! presumptive neural plate [Term] id: TAO:0000013 name: cranial ganglia def: "Ganglion which is located in the head." [ZFIN:curator] synonym: "presumptive cranial ganglia" EXACT [] is_a: TAO:0000190 ! ganglion [Term] id: TAO:0000014 name: dorsal aorta def: "Principal unpaired, median artery of the trunk, leading from the paired roots (radices) of the dorsal aorta to the caudal artery. Kimmel et al, 1995." [ZFIN:curator] synonym: "DA" EXACT [] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0005077 ! vascular cord relationship: OBO_REL:part_of TAO:0001073 ! axial vasculature relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0000015 name: dermopalatine def: "Dermal bone that forms the antero-lateral region of the palate and is located ventral to the autopalatine. The dermopalatine is bilaterally paired and usually bears teeth." [TAO:GA_TG] comment: In ostariophysans, the dermopalatine is absent. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch [Term] id: TAO:0000016 name: ectoderm is_a: TAO:0001122 ! primary germ layer relationship: develops_from TAO:0001376 ! presumptive ectoderm [Term] id: TAO:0000017 name: endoderm is_a: TAO:0001122 ! primary germ layer relationship: develops_from TAO:0000416 ! presumptive endoderm [Term] id: TAO:0000018 name: epiblast def: "The outer of the two layers of the blastoderm that form during gastrulation, corresponding to primitive ectoderm during gastrulation and to the definitive ectoderm after gastrulation. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001105 ! embryonic structure relationship: OBO_REL:part_of TAO:0000111 ! germ ring [Term] id: TAO:0000019 name: epiphysis def: "A circumscribed swelling, includes the pineal primordium that appears late in the segmentation period in the dorsal midline of the diencephalon. Kimmel et al, 1995." [ZFIN:curator] synonym: "pineal gland" EXACT [] relationship: OBO_REL:part_of TAO:0001127 ! visual system relationship: OBO_REL:part_of TAO:0001158 ! endocrine system relationship: OBO_REL:part_of TAO:0001359 ! pineal complex [Term] id: TAO:0000020 name: extraembryonic structure def: "Anatomical structure that is contiguous with the embryo and is comprised of portions of tissue or cells that will not contribute to the embryo." [ZFIN:curator] xref: CARO:0000042 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0000022 name: floor plate synonym: "floorplate" EXACT [] synonym: "fp" EXACT [] relationship: develops_from TAO:0001218 ! presumptive floor plate relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0000023 name: forerunner cell group def: "A group of cells that migrate at the leading edge of shield during gastrulation but do not involute. At the end of gastrulation, forerunner cells migrate deep into the embryo and organize to form Kuppfer's vesicle. Cooper and D'Amico, 1996." [ZFIN:curator] synonym: "DFCs" EXACT [] synonym: "dorsal forerunner cells" EXACT [] synonym: "forerunner cells" EXACT PLURAL [] is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0001126 ! noninvoluting endocytic marginal cell cluster [Term] id: TAO:0000024 name: retinal ganglion cell layer relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0000026 name: hatching gland def: "A transversely oriented set of cells located deep to the EVL on the pericardial membrane, especially prominent during pharyngula period because of the brightly refractile cytoplasmic granules (containing hatching enzymes) of the principal cells of the gland. Kimmel et al, 1995." [ZFIN:curator] synonym: "hgg" EXACT [] is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0000027 name: paired fin skeleton synonym: "appendicular skeleton" EXACT [] is_a: TAO:0000434 ! skeletal system [Term] id: TAO:0000028 name: heart primordium def: "Bilateral groups of cells consisting of three rows: one row of endocardial precursors medially and two rows of myocardical precursors laterally. The two populations fuse at the midline between 21 and 26 somites to form the heart rudiment or cone. Stainier 2001." [ZFIN:curator] relationship: develops_from TAO:0001065 ! lateral mesoderm relationship: OBO_REL:part_of TAO:0000010 ! cardiovascular system [Term] id: TAO:0000029 name: hindbrain def: "The most posterior of the three principal regions of the brain, forming the rhombencephalon and all or most of the metencephalon. Kimmel et al, 1995." [ZFIN:curator] synonym: "rhombencephalon" EXACT [] relationship: develops_from TAO:0007043 ! hindbrain neural tube relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0000030 name: macula utricle is_a: TAO:0000386 ! macula relationship: develops_from TAO:0000168 ! anterior macula relationship: OBO_REL:part_of TAO:0000700 ! utricle [Term] id: TAO:0000031 name: hypochord def: "A transient rod-like structure which is endodermally derived and located immediately ventral to the notochord. The hypochord is thought to play a role in positioning the dorsal aorta. Eriksson and Lofberg, 2000." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000017 ! endoderm [Term] id: TAO:0000032 name: hypothalamus def: "A specialized brain region of the ventral diencephalon arising near the end of the segmentation period; the embryonic hypothalamic region will give rise to the posterior pituitary gland as well as a number of brain nuclei. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000033 name: intermediate cell mass of mesoderm synonym: "ICM" EXACT [] synonym: "intermediate cell mass of Oellacher" EXACT [] synonym: "posterior intermediate cell mass" EXACT [] relationship: develops_from TAO:0000121 ! lateral plate mesoderm relationship: develops_from TAO:0001201 ! ventral lateral mesoderm relationship: OBO_REL:part_of TAO:0005023 ! hematopoietic system [Term] id: TAO:0000034 name: lateral line system def: "A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "ll" EXACT [] is_a: TAO:0000282 ! sensory system relationship: OBO_REL:part_of TAO:0000142 ! peripheral nervous system [Term] id: TAO:0000035 name: lens relationship: develops_from TAO:0000122 ! lens placode relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0000036 name: liver and biliary system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000037 name: anatomical structure def: "Material anatomical entity that has inherent 3D shape and is generated by coordinated expression of the organism's own genome." [TAO:wd] xref: CARO:0000003 is_a: TAO:0001836 ! material anatomical entity [Term] id: TAO:0000038 name: margin is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0000039 name: median axial vein is_a: TAO:0000082 ! vein [Term] id: TAO:0000040 name: median fin fold synonym: "median fin" EXACT [] is_a: TAO:0000292 ! surface structure [Term] id: TAO:0000041 name: mesoderm is_a: TAO:0001122 ! primary germ layer relationship: develops_from TAO:0001377 ! presumptive mesoderm [Term] id: TAO:0000042 name: midbrain hindbrain boundary synonym: "isthmus" EXACT [] synonym: "mhb" EXACT [] relationship: develops_from TAO:0007047 ! midbrain hindbrain boundary neural tube relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0000043 name: muscle pioneer somite 1 synonym: "muscle pioneers somite 1" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000963 ! slow muscle cell somite 1 [Term] id: TAO:0000044 name: myotome somite 14 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000726 ! somite 14 [Term] id: TAO:0000045 name: neural crest def: "A cell population arising from the dorsolateral aspect of the central nervous system primordium during the segmentation period, and later migrating along stereotyped pathways to give rise to a diverse and well-defined set of cell types including pigment cells, peripheral neurons and glia, and head cartilage. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001120 ! neuroectoderm [Term] id: TAO:0000046 name: retinal neural layer synonym: "neuroretina" EXACT [] relationship: OBO_REL:part_of TAO:0000152 ! retina [Term] id: TAO:0000047 name: peripheral olfactory organ synonym: "nose" EXACT [] relationship: develops_from TAO:0000048 ! olfactory placode relationship: OBO_REL:part_of TAO:0001149 ! olfactory system [Term] id: TAO:0000048 name: olfactory placode synonym: "nasal placode" EXACT [] is_a: TAO:0001309 ! neurogenic placode relationship: OBO_REL:part_of TAO:0001149 ! olfactory system [Term] id: TAO:0000049 name: optic recess relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0000050 name: optic vesicle relationship: develops_from TAO:0000570 ! optic primordium relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0000051 name: otic vesicle def: "Epithelial sac present beside the fifth rhombomere; forms the semicircular canals dorsally and the otolith organs ventrally, and houses the acoustico-vestibular sensory epithelia (maculae) of hair cells. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] synonym: "otic capsule" EXACT [] synonym: "otocyst" EXACT [] synonym: "ov" EXACT [] is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0000138 ! otic placode [Term] id: TAO:0000052 name: dorsal actinotrichium def: "Actinotrichium which is part of the dorsal fin fold." [TAO:wd] synonym: "dorsal actinotrichia" EXACT PLURAL [] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0000102 ! dorsal fin fold [Term] id: TAO:0000053 name: presumptive segmental plate relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0000054 name: pericardial sac synonym: "pericardium" EXACT [] relationship: OBO_REL:part_of TAO:0000010 ! cardiovascular system [Term] id: TAO:0000056 name: pharynx def: "Swollen region of the anterior foregut, posterior to the mouth and anterior to the liver; its walls form the jaws and gills. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000339 ! digestive system [Term] id: TAO:0000058 name: polster def: "The hatching gland rudiment at the time it underlies the forebrain during the early segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "pillow" EXACT [ZFIN:ZDB-PUB-961014-576] relationship: develops_from TAO:0000004 ! anterior axial hypoblast relationship: OBO_REL:part_of TAO:0000060 ! prechordal plate [Term] id: TAO:0000059 name: postoptic commissure is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000060 name: prechordal plate def: "Axial hypoblast located anterior to the chorda mesoderm; the polster is its most anterior region. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0001204 ! axial mesoderm [Term] id: TAO:0000062 name: presumptive forebrain synonym: "presumptive prosencephalon" EXACT [] relationship: OBO_REL:part_of TAO:0000146 ! presumptive brain relationship: OBO_REL:part_of TAO:0007014 ! anterior presumptive neural plate [Term] id: TAO:0000063 name: presumptive neural plate alt_id: TAO:0000061 def: "Region of the gastrula which gives rise to the neural plate." [ZFIN:curator] synonym: "neurectoderm" EXACT [] synonym: "presumptive central nervous system" EXACT [] synonym: "prospective neuroectoderm" EXACT [] synonym: "prospective vegetal ectoderm" EXACT [] is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0000064 name: presumptive pigmented epithelium relationship: OBO_REL:part_of TAO:0000050 ! optic vesicle [Term] id: TAO:0000066 name: proctodeum def: "An inward fold on the surface of the embryonic ectoderm that develops into part of the anal passage." [ZFIN:curator] synonym: "anus" EXACT [] relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0000067 name: pronephric mesoderm relationship: OBO_REL:part_of TAO:0001206 ! intermediate mesoderm [Term] id: TAO:0000068 name: proneural cluster synonym: "proneural clusters" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000132 ! neural plate [Term] id: TAO:0000069 name: rhombomere 6 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r6" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001210 ! presumptive rhombomere 6 [Term] id: TAO:0000070 name: sensory axons peripheral relationship: OBO_REL:part_of TAO:0000282 ! sensory system [Term] id: TAO:0000071 name: shield synonym: "organizer" EXACT [] synonym: "Spemann Mangold organizer" EXACT [] synonym: "Spemann's organizer" EXACT [] relationship: OBO_REL:part_of TAO:0000111 ! germ ring [Term] id: TAO:0000072 name: somite 1 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000073 name: somite 5 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000074 name: somite 26 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000075 name: spinal cord relationship: develops_from TAO:0007042 ! spinal cord neural tube relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0000076 name: swim bladder def: "Cavitated compound organ that is double-chambered, located in the coelom and used to maintain buoyancy and may function as an acoustic resonator." [ZFIN:curator] synonym: "gas bladder" EXACT [] synonym: "swimbladder" EXACT [] is_a: TAO:0001490 ! cavitated compound organ relationship: OBO_REL:part_of TAO:0000204 ! esophagus relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000077 name: tail bud synonym: "tailbud" EXACT [] is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0000078 name: ventral actinotrichium def: "Actinotrichium which is part of the ventral fin fold." [TAO:wd] synonym: "ventral actinotrichia" EXACT PLURAL [] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0001069 ! ventral fin fold [Term] id: TAO:0000079 name: telencephalon def: "The anterior and dorsal forebrain neuromere, includes the olfactory bulb. Kimmel et al, 1995." [ZFIN:curator] relationship: develops_from TAO:0000571 ! presumptive telencephalon relationship: OBO_REL:part_of TAO:0000109 ! forebrain [Term] id: TAO:0000080 name: trigeminal neural crest def: "Cranial neural crest which gives rise to the trigeminal ganglion." [ZFIN:curator] is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0000081 name: trunk mesenchyme is_a: TAO:0000393 ! mesenchyme [Term] id: TAO:0000082 name: vein synonym: "venous system" EXACT [] is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0000083 name: ventral mesoderm relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0000084 name: yolk def: "Nutrient store for embryonic development in the form of semicrystalline phospholipoprotein and contained within yolk granules. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0000085 name: apical ectodermal ridge pectoral fin bud is_a: TAO:0002146 ! apical ectodermal ridge relationship: OBO_REL:part_of TAO:0000141 ! pectoral fin bud [Term] id: TAO:0000086 name: EVL def: "Outermost monolayer of cells surrounding the embryo that become very flattened in the blastula and give rise to the periderm. Sometimes used synonymously with periderm. Kimmel et al, 1995." [ZFIN:curator] synonym: "enveloping layer" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "periderm" EXACT [] is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0001484 ! superficial blastomere relationship: OBO_REL:part_of TAO:0001176 ! blastoderm [Term] id: TAO:0000088 name: YSL def: "Peripheral layer of the yolk cell including nuclei and non-yolky cytoplasm. Kimmel et al, 1995." [ZFIN:curator] synonym: "periblast" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "yolk syncytial layer" EXACT [ZFIN:ZDB-PUB-961014-576] is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0000084 ! yolk relationship: develops_from TAO:0000541 ! marginal blastomere [Term] id: TAO:0000089 name: actinotrichium def: "Portion of tissue which is a slender, horny, flexible, unsegmented fibril, which strengthens the embryonic fin fold. Actinotrichia are translucent, exhibit birefringence (double refraction) and are composed of the scleroprotein elastoidine. http://www.briancoad.com/Dictionary/A.htm" [ZFIN:curator] synonym: "actinotrichia" EXACT PLURAL [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000040 ! median fin fold relationship: OBO_REL:part_of TAO:0000108 ! fin [Term] id: TAO:0000090 name: apical ectodermal ridge dorsal fin is_a: TAO:0002146 ! apical ectodermal ridge relationship: OBO_REL:part_of TAO:0001173 ! dorsal fin [Term] id: TAO:0000091 name: axial chorda mesoderm alt_id: TAO:0001219 synonym: "chordamesoderm" EXACT [] synonym: "presumptive notochord" EXACT [] is_a: TAO:0001116 ! presumptive structure relationship: OBO_REL:part_of TAO:0001204 ! axial mesoderm [Term] id: TAO:0000092 name: axis synonym: "midline" EXACT [] is_a: TAO:0001308 ! organism subdivision [Term] id: TAO:0000093 name: blastomere def: "A cell arising during cleavage; the term encompasses the partially cleaved, incomplete cells at the blastodisc margin before they collectively form the yolk syncytial layer (YSL) in the midblastula. Kimmel et al, 1995." [ZFIN:curator] synonym: "blastomeres" EXACT PLURAL [] is_a: TAO:0001105 ! embryonic structure relationship: OBO_REL:part_of TAO:0001175 ! blastodisc [Term] id: TAO:0000094 name: blood island def: "Nests of developing blood cells arising late in the segmentation period from the intermediate mass, and located in the anterior-ventral tail, just posterior to the yolk extension. Kimmel et al, 1995." [ZFIN:curator] synonym: "blood islands" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000033 ! intermediate cell mass of mesoderm [Term] id: TAO:0000095 name: gill arch 1-5 skeleton def: "Skeletal and cartilaginous elements of the gill arches; the last five of the set of seven pharyngeal arches; the numbering system can be confusing; generally branchial arch #1 is the first gill arch, or the third pharyngeal arch, but some authors do not follow this convention. Kimmel et al, 1995." [ZFIN:curator] synonym: "branchial arches" EXACT [] synonym: "gill arches 1-5" EXACT [] synonym: "pharyngeal arch 3-7 skeleton" EXACT [] synonym: "visceral arches 3-7" EXACT [] is_a: TAO:0001216 ! splanchnocranium relationship: OBO_REL:part_of TAO:0001597 ! gill arch [Term] id: TAO:0000096 name: cardinal system is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0000097 name: carotid artery def: "Artery originating at the junction of the first two aortic arches and supplying the anterior brain. Kimmel et al, 1995." [ZFIN:curator] synonym: "internal carotid artery" EXACT [ZFIN:ZDB-PUB-961014-576] is_a: TAO:0000005 ! artery [Term] id: TAO:0000098 name: proliferative region synonym: "cell cycle" EXACT [] synonym: "cell division" EXACT [] synonym: "proliferation" EXACT [] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0000099 name: brain vasculature is_a: TAO:0001267 ! cranial vasculature [Term] id: TAO:0000100 name: cerebellum def: "Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995." [ZFIN:curator] relationship: develops_from TAO:0001442 ! upper rhombic lip relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0000101 name: diencephalon def: "The more posterior and ventral of two forebrain neuromeres, the other being the telencephalon; major derivatives are the eye cups, the brain pretectal region, the thalamus, hypothalamus, and epithalamus (including the habenula and epiphysis). Kimmel et al, 1995." [ZFIN:curator] relationship: develops_from TAO:0000574 ! presumptive diencephalon relationship: OBO_REL:part_of TAO:0000109 ! forebrain [Term] id: TAO:0000102 name: dorsal fin fold relationship: OBO_REL:part_of TAO:0000040 ! median fin fold [Term] id: TAO:0000103 name: supramaxilla def: "Dermal bone that is located on the dorsal margin of the maxilla, usually at the dorso-posterior region of maxilla. The supramaxilla is a paired bone." [TAO:ga_tg] comment: The supramaxilla may be present as one or two bones. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium [Term] id: TAO:0000104 name: suprapreopercle def: "Dermal bone that is located dorsal to the preopercle or lies on the antero-dorsal corner of the opercle, and encloses the upper section of the preopercular canal. The suprapreopercle is paired." [TAO:GA_TG] comment: Synonyms:\nsupraopercle (Roberts 1969)\nsupraopercular bone (Buckup 1998) synonym: "supraopercle" EXACT [] synonym: "supraopercular bone" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium [Term] id: TAO:0000105 name: epidermis def: "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Le Guellec et al, 2004." [ZFIN:curator] relationship: develops_from TAO:0000016 ! ectoderm relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0000106 name: extension def: "The posterior elongated region of the yolk cell that forms during the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "yolk extension" EXACT [ZFIN:ZDB-PUB-961014-576] relationship: OBO_REL:part_of TAO:0000084 ! yolk [Term] id: TAO:0000107 name: eye def: "A cavitated compound organ that transduces light waves into neural signals." [TAO:wd] synonym: "eyeball" EXACT [] is_a: TAO:0000292 ! surface structure is_a: TAO:0001490 ! cavitated compound organ relationship: OBO_REL:part_of TAO:0001114 ! head relationship: OBO_REL:part_of TAO:0001127 ! visual system [Term] id: TAO:0000108 name: fin synonym: "fins" EXACT PLURAL [] is_a: TAO:0000292 ! surface structure relationship: develops_from TAO:0001383 ! fin bud [Term] id: TAO:0000109 name: forebrain def: "The most anterior region the brain including both the telencephalon and diencephalon. Kimmel et al, 1995." [ZFIN:curator] synonym: "prosencephalon" EXACT [] relationship: develops_from TAO:0007041 ! forebrain neural tube relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0000110 name: fourth ventricle def: "Fluid-filled brain cavity. Kimmel et al, 1995." [ZFIN:curator] synonym: "4th ventricle" EXACT [] synonym: "hindbrain ventricle" EXACT [] synonym: "rhombencephalic ventricle" EXACT [] synonym: "rhombencephalic vesicle" EXACT [] relationship: OBO_REL:part_of TAO:0000029 ! hindbrain relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0000111 name: germ ring is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0000038 ! margin [Term] id: TAO:0000112 name: gut def: "The alimentary or digestive tract, and associated organs." [ZFIN:curator] synonym: "alimentary canal" EXACT [] synonym: "gut tube" EXACT [] relationship: OBO_REL:part_of TAO:0000339 ! digestive system [Term] id: TAO:0000113 name: head mesenchyme def: "Mesoderm that will give rise, along with cranial neural crest cells, to connective tissue, bone and musculature in the head. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] is_a: TAO:0000393 ! mesenchyme [Term] id: TAO:0000114 name: heart def: "Blood pumping organ composed of four chambers: sinus venosus, atrium, cardiac ventricle and bulbus arteriosus." [ZFIN:curator] is_a: TAO:0000496 ! compound organ relationship: develops_from TAO:0000360 ! heart tube relationship: OBO_REL:part_of TAO:0000010 ! cardiovascular system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000115 name: heart rudiment def: "The migrating myocardial precursors of the heart rudiment form a cone like structure between 19.5hpf and 22hpf, and eventually telescope out into the primitive heart tube at 24hpf. Stainier 2001." [ZFIN:curator] synonym: "heart cone" EXACT [] synonym: "rudimentary heart" EXACT [] relationship: develops_from TAO:0000028 ! heart primordium [Term] id: TAO:0000116 name: macula lagena is_a: TAO:0000386 ! macula relationship: OBO_REL:part_of TAO:0000374 ! lagena [Term] id: TAO:0000117 name: hypoblast def: "The inner of the two layers of the blastoderm that forms during gastrulation and give rise to the definitive mesoderm and endoderm. Kimmel et al, 1995." [ZFIN:curator] synonym: "mesendoderm" EXACT [ZFIN:ZDB-PUB-961014-576] is_a: TAO:0001105 ! embryonic structure relationship: OBO_REL:part_of TAO:0000111 ! germ ring [Term] id: TAO:0000118 name: hypophysis def: "An endocrine gland located ventral to the diencephalon and derived from mixed neuroectodermal and non neuroectodermal origin." [ZFIN:curator] synonym: "pituitary" EXACT [] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0000119 name: retinal inner nuclear layer synonym: "inner nuclear layer" EXACT PLURAL [] synonym: "intermediate cell layer" EXACT [] relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0000120 name: lateral line ganglion synonym: "lateral line ganglia" EXACT PLURAL [] synonym: "llg" EXACT [] is_a: TAO:0000013 ! cranial ganglia relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0000121 name: lateral plate mesoderm synonym: "lateral plate" EXACT [] relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0000122 name: lens placode def: "Ectodermal primordium of the lens of the eye. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000016 ! ectoderm [Term] id: TAO:0000123 name: liver relationship: develops_from TAO:0000124 ! liver primordium relationship: OBO_REL:part_of TAO:0000036 ! liver and biliary system relationship: OBO_REL:part_of TAO:0000339 ! digestive system relationship: OBO_REL:part_of TAO:0001159 ! immune system [Term] id: TAO:0000124 name: liver primordium synonym: "liver bud" EXACT [] relationship: OBO_REL:part_of TAO:0000036 ! liver and biliary system [Term] id: TAO:0000125 name: mandibular lateral line neuromast def: "Neuromast that is part of the mandibular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast mandibular" EXACT [] synonym: "neuromasts mandibular" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000259 ! mandibular lateral line [Term] id: TAO:0000126 name: centrum def: "Centra are represented by mineralized, calcified, or ossified portions that surround the notochord. The autocentrum, present in Danio and all other living teleosts, is formed by direct ossification outside the elastica externa of the notochord (Arratia, 1999)." [ZFIN:curator] synonym: "autocentrum" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001189 ! vertebra [Term] id: TAO:0000127 name: antorbital def: "Dermal bone positioned as the first bone of the infraorbital series. The antorbital articulates with the lacrimal or infraorbital 1 anteroventrally and the supraorbital posterodorsally. The antorbital is a paired bone." [TAO:GA_TG] comment: The antorbital in some teleosts fuses with the lacrimal. The antorbital contains the end branch of the infraorbital canal or neuromasts for the infraorbital canal in basal teleosts such as elopiformes, some osteoglossomorphs and fossil basal teleosts. synonym: "adnasal" EXACT [TAO:Goodrich_1930, TAO:Regan_1923] synonym: "lateral rostral" EXACT [TAO:Jollie_1984] synonym: "perorbital" EXACT [TAO:Bridge_1877] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001410 ! orbital region relationship: OBO_REL:part_of TAO:0001709 ! infraorbital series [Term] id: TAO:0000128 name: midbrain def: "The brain region between the forebrain anteriorly and the hindbrain posteriorly, including the tectum dorsally and the midbrain tegmentum ventrally. Kimmel et al, 1995." [ZFIN:curator] synonym: "mesencephalon" EXACT [ZFIN:ZDB-PUB-961014-576] relationship: develops_from TAO:0007039 ! midbrain neural tube relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0000130 name: olfactory pit synonym: "nasal cavity" EXACT [] synonym: "nasal pit" EXACT [] synonym: "olfactory cavity" EXACT [] relationship: OBO_REL:part_of TAO:0000047 ! peripheral olfactory organ [Term] id: TAO:0000131 name: neural keel def: "An intermediate stage (between the neural plate and neural rod) during the early segmentation period in the morphogenesis of the central nervous system primordium; the keel is roughly triangular shaped in cross section. Kimmel et al, 1995." [ZFIN:curator] synonym: "presumptive central nervous system" EXACT [] is_a: TAO:0001120 ! neuroectoderm relationship: develops_from TAO:0000132 ! neural plate [Term] id: TAO:0000132 name: neural plate def: "The earliest recognizable dorsal ectodermal primordium of the central nervous system present near the end of gastrulation before infolding to form the neural keel; consists of a thickened pseudostratified epithelium. Kimmel et al, 1995." [ZFIN:curator] synonym: "presumptive central nervous system" EXACT [] is_a: TAO:0001120 ! neuroectoderm relationship: develops_from TAO:0000063 ! presumptive neural plate [Term] id: TAO:0000133 name: neural rod def: "An intermediate stage in the development of the central nervous system present during the segmentation period; the neural rod is roughly cylindrical in shape, forms from the neural keel, and is not yet hollowed out into the neural tube. Kimmel et al, 1995." [ZFIN:curator] synonym: "presumptive central nervous system" EXACT [] is_a: TAO:0001120 ! neuroectoderm relationship: develops_from TAO:0000131 ! neural keel [Term] id: TAO:0000135 name: notochord def: "Rod-like principal supportive element of the embryo and larva, present in the midline just ventral to the neural tube, and differentiating during the segmentation period to form large vacuolated epithelial cells and a surrounding a sheath of fibrous and elastic layers. Layering of the sheath may differ in structure, thickness and development among groups; in cypriniforms there are actually three very thin layers to the sheath. A functional, well developed notochord is present throughout life in certain basal fish groups but not in cypriniforms. Kimmel et al, 1995." [ZFIN:curator] synonym: "notocord" EXACT [] is_a: TAO:0001477 ! portion of tissue relationship: develops_from TAO:0000091 ! axial chorda mesoderm relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton relationship: OBO_REL:part_of TAO:0001414 ! occipital region [Term] id: TAO:0000136 name: otic lateral line neuromast def: "Neuromast that is part of the otic lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast otic" EXACT [] synonym: "neuromasts otic" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000464 ! otic lateral line [Term] id: TAO:0000137 name: optic stalk relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000138 name: otic placode def: "Primordium of the ear epithelium before it hollows into the otic vesicle, present beside the hindbrain rudiment in the midsegmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] synonym: "otic capsule" EXACT [] synonym: "otocyst" EXACT [] is_a: TAO:0001310 ! dorsolateral placode relationship: OBO_REL:part_of TAO:0001138 ! vestibuloauditory system [Term] id: TAO:0000139 name: immature otolith def: "Brightly refractile stone-like organ within the otic vesicle and positioned over a sensory macula; two form in each vesicle during the late segmentation period. Kimmel et al, 1995. (Also see Anatomical Atlas entry for otolith by T. Whitfield.)" [ZFIN:curator] synonym: "immature otoliths" EXACT PLURAL [] is_a: TAO:0001487 ! portion of organism substance relationship: OBO_REL:part_of TAO:0000051 ! otic vesicle [Term] id: TAO:0000140 name: pancreas is_a: TAO:0000496 ! compound organ relationship: develops_from TAO:0001390 ! pancreatic bud relationship: OBO_REL:part_of TAO:0001371 ! pancreatic system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000141 name: pectoral fin bud is_a: TAO:0001383 ! fin bud relationship: develops_from TAO:0001453 ! pectoral fin field [Term] id: TAO:0000142 name: peripheral nervous system def: "Nervous structures including ganglia outside of the central nervous system. Kimmel et al, 1995." [ZFIN:curator] synonym: "pns" EXACT [] is_a: TAO:0000396 ! nervous system [Term] id: TAO:0000143 name: retinal photoreceptor layer def: "The layer within the retina where the photoreceptor cell receptor segments reside." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0000144 name: retinal pigmented epithelium def: "A monolayer of pigmented epithelium covering the neural retina; develops from the outer of the two layers of the optic cup. Kimmel et al, 1995." [ZFIN:curator] synonym: "pigmented epithelium" EXACT [] synonym: "pigmented retinal epithelium" EXACT [] synonym: "PRE" EXACT [] synonym: "RPE" EXACT [] relationship: develops_from TAO:0000064 ! presumptive pigmented epithelium relationship: OBO_REL:part_of TAO:0000152 ! retina [Term] id: TAO:0000145 name: CNS tracts and commissures is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0000146 name: presumptive brain synonym: "brain rudiment" EXACT [] relationship: OBO_REL:part_of TAO:0000063 ! presumptive neural plate [Term] id: TAO:0000147 name: presumptive epidermis is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0000148 name: presumptive midbrain synonym: "presumptive mesencephalon" EXACT [] relationship: OBO_REL:part_of TAO:0000146 ! presumptive brain relationship: OBO_REL:part_of TAO:0007014 ! anterior presumptive neural plate [Term] id: TAO:0000149 name: primitive heart tube relationship: develops_from TAO:0000115 ! heart rudiment [Term] id: TAO:0000150 name: pronephric duct def: "Duct of the embryonic kidney, present bilaterally ventral to the somites and leading to the anal region where it empties separately from, and just posterior to the anus. Kimmel et al, 1995." [ZFIN:curator] relationship: develops_from TAO:0000067 ! pronephric mesoderm relationship: OBO_REL:part_of TAO:0000151 ! pronephros relationship: OBO_REL:part_of TAO:0000163 ! renal system [Term] id: TAO:0000151 name: pronephros def: "The embryonic kidney, present at the level of the third somite, is composed of two glomeruli fused at the midline, two pronephric tubules, and paired bilateral pronephric ducts that modify the composition of the blood filtrate before delivering it to the cloaca for excretion.Kimmel et al, 1995." [ZFIN:curator] synonym: "embryonic kidney" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "kidney" EXACT [] is_a: TAO:0001490 ! cavitated compound organ relationship: develops_from TAO:0000067 ! pronephric mesoderm relationship: OBO_REL:part_of TAO:0000163 ! renal system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000152 name: retina def: "The portion of the eye developing from the optic primordium and including the neural retina and the retinal pigment layer. Kimmel et al, 1995." [ZFIN:curator] relationship: develops_from TAO:0001071 ! presumptive retina relationship: OBO_REL:part_of TAO:0001202 ! optic cup [Term] id: TAO:0000153 name: rhombomere 8 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r8" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001214 ! presumptive rhombomere 8 [Term] id: TAO:0000154 name: sinus venosus def: "Heart region collecting blood from the paired common cardinal veins and delivering to the atrium. One of four heart chambers, the sinus venosus also acts as a pacemaker and is the first to contract. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0000155 name: somite def: "Undifferentiated mesodermal components of early trunk or tail segments or metameres, derived from paraxial mesoderm; forms myotomes, sclerotomes and perhaps dermatomes. Kimmel et al, 1995." [ZFIN:curator] synonym: "somitic mesoderm" EXACT [] relationship: develops_from TAO:0000279 ! segmental plate relationship: develops_from TAO:0000942 ! paraxial mesenchyme relationship: OBO_REL:part_of TAO:0001115 ! trunk [Term] id: TAO:0000156 name: somite 20 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000157 name: somite 30 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000158 name: urostyle def: "Anatomical cluster that is the result of fusion of preural centrum 1 with one or more adjacent ural centra." [TAO:wd, ZFIN:curator] comment: In zebrafish, it is composed of preural vertebra 1 and ural centra 1 and 2. The number of ural centra that become fused with preural centrum 1 varies among teleost subgroups. Because of varying developmental origins the urostyle may not be homologous across species. synonym: "compound caudal centrum" EXACT [] synonym: "compound centrum" EXACT [] synonym: "compound terminal centrum" EXACT [] synonym: "compound terminal vertebra" EXACT [] synonym: "last vertebra" EXACT [] synonym: "terminal centrum" EXACT [] synonym: "ultimate vertebra" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0000159 name: tectal ventricle synonym: "cerebral aquaduct" EXACT [] synonym: "medial tectal ventricle" EXACT [] synonym: "mesencephalic ventricle" EXACT [] synonym: "mesencephalic vesicle" EXACT [] synonym: "midbrain ventricle" EXACT [] relationship: OBO_REL:part_of TAO:0000128 ! midbrain relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0000160 name: tegmentum relationship: OBO_REL:part_of TAO:0001354 ! mesencephalic tegmentum [Term] id: TAO:0000161 name: third ventricle def: "Fluid-filled brain cavity. Kimmel et al, 1995." [ZFIN:curator] synonym: "3rd ventricle" EXACT [] synonym: "diencephalic ventricle" EXACT [] synonym: "diencephalic vesicle" EXACT [] relationship: develops_from TAO:0001259 ! forebrain ventricle relationship: OBO_REL:part_of TAO:0000101 ! diencephalon relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0000162 name: trigeminal placode def: "The ectodermal rudiment of the trigeminal ganglion, distinguishable during much of the segmentation period. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001310 ! dorsolateral placode [Term] id: TAO:0000163 name: renal system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000164 name: ventral mesenchyme is_a: TAO:0000393 ! mesenchyme [Term] id: TAO:0000165 name: inferior lobe synonym: "inferior lobes" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000347 ! dorsal zone [Term] id: TAO:0000166 name: lateral crista alt_id: TAO:0000378 def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "lateral crista ampullaris" EXACT [] synonym: "lateral cristae" EXACT PLURAL [] synonym: "lc" EXACT [] synonym: "sensory patch" EXACT [] synonym: "sensory patches" EXACT [] relationship: OBO_REL:part_of TAO:0000220 ! lateral semicircular canal [Term] id: TAO:0000167 name: anal fin skeleton is_a: TAO:0001123 ! axial fin skeleton [Term] id: TAO:0000168 name: anterior macula def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "am" EXACT [] synonym: "sensory patch" EXACT [] is_a: TAO:0000386 ! macula [Term] id: TAO:0000169 name: basisphenoid def: "An endochondral bone that is located ventral to the pterosphenoid and dorsal to the parasphenoid. Basisphenoid is a median bone that is usually Y-shaped." [TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: OBO_REL:part_of TAO:0001410 ! orbital region [Term] id: TAO:0000170 name: basibranchial bone def: "Replacement bone that is ventral, median, and associated with a single pharyngeal arch in the pharyngeal arch 3-7 skeleton." [ZFIN:curator] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001220 ! copula relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0000171 name: interhyal bone def: "Replacement bone that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [TAO:wd] comment: It articulates ventrally with the posterior end of the posterior ceratohyal. synonym: "stylohyal" EXACT [] is_a: TAO:0001637 ! replacement bone is_a: TAO:0001892 ! interhyal element relationship: develops_from TAO:0001511 ! interhyal cartilage relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: overlaps TAO:0001841 ! interhyal-epihyal joint [Term] id: TAO:0000172 name: branchial muscle synonym: "branchial muscles" EXACT PLURAL [] is_a: TAO:0001953 ! cranial muscle relationship: OBO_REL:part_of TAO:0001307 ! pharyngeal musculature relationship: OBO_REL:part_of TAO:0001597 ! gill arch [Term] id: TAO:0000173 name: bulbus arteriosus def: "A pear shaped chamber that functions as a capacitor, maintaining continuous blood flow into the gill arches. The bulbus arteriosus has three distinct layers. Hu et al. 2000." [ZFIN:curator] synonym: "outflow tract" EXACT [] synonym: "truncus" EXACT [] relationship: develops_from TAO:0000818 ! vagal neural crest relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0000174 name: caudal cerebellar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000175 name: posterior lateral line nerve def: "Cranial nerve which enters the brain between cranial nerves VIII and IX; contains afferents and sensory efferents to the posterior lateral line ganglion and middle ganglion. Fibers from the posterior lateral line ganglion innervate the occipital dorsal lateral line and trunk lateral lines." [ZFIN:curator] synonym: "caudal lateral line nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve is_a: TAO:0001479 ! lateral line nerve relationship: OBO_REL:part_of TAO:0001471 ! posterior lateral line system [Term] id: TAO:0000176 name: lateral entopeduncular nucleus relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000177 name: caudal oblique relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000178 name: caudal peduncle is_a: TAO:0000292 ! surface structure [Term] id: TAO:0000179 name: caudal root of abducens nerve relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000180 name: caudal vein def: "Vein in the tail returning blood from the trunk and tail to the heart, leads directly into the posterial cardinal vein in the posterior trunk. Kimmel et al, 1995." [ZFIN:curator] synonym: "CV" EXACT [] is_a: TAO:0000082 ! vein relationship: develops_from TAO:0001286 ! caudal vein plexus relationship: OBO_REL:part_of TAO:0001073 ! axial vasculature relationship: OBO_REL:part_of TAO:0005037 ! tail vasculature [Term] id: TAO:0000181 name: caudal zone of D synonym: "posterior zone of dorsal telencephalic area" EXACT [] relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000182 name: central caudal thalamic nucleus synonym: "central posterior thalamic nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0000653 ! dorsal thalamus [Term] id: TAO:0000183 name: central pretectum relationship: OBO_REL:part_of TAO:0000418 ! pretectum [Term] id: TAO:0000184 name: cleithrum def: "Dermal bone that articulates dorsally with the supracleithrum and ventro-medially with the scapula and coracoid and mesocoracoid bone when the last bone is present. With the posttemporal and supracleithrum, the cleithrum supports the primary pectoral girdle. The cleithrum is located immediately behind the branchial cavity." [TAO:wd] comment: Commonly, the cleithrum is a large, well-ossified bone provided with a dorsal and a ventral arm that form an angle of about 90 or a few more degrees. The dorsal arm may end in a sharp or spine-like process to articulate with the supracleithrum. At the confluence of both arms the bone presents a blade extending postero-ventrally and that may have different development among fishes. The anterior edge of the cleithrum is usually thick and may produce a medial plate of different degrees of development. is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0000185 name: commissura rostral, pars ventralis relationship: OBO_REL:part_of TAO:0001108 ! anterior commissure [Term] id: TAO:0000186 name: common cardinal vein def: "Bilaterally paired longitudinal vein; the anterior cardinal returns blood from the head, and the posterior cardinal returns it from the trunk; these two vessels join together on each side as the common cardinal vein (duct of Cuvier; misnamed the vitelline vein) that leads across the yolk cell to the heart's sinus venosus. Kimmel et al, 1995." [ZFIN:curator] synonym: "duct of Cuvier" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0000096 ! cardinal system relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0000187 name: lateral granular eminence relationship: OBO_REL:part_of TAO:0000307 ! vestibulolateralis lobe [Term] id: TAO:0000188 name: corpus cerebelli synonym: "cerebellar corpus" EXACT [] synonym: "corpus cerebellum" EXACT [] relationship: OBO_REL:part_of TAO:0000100 ! cerebellum [Term] id: TAO:0000189 name: otic region def: "Anatomical cluster that is a posterolateral part of the cranium and structurally supports the vestibuloauditory system." [TAO:MAH] synonym: "cranial vault" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium relationship: overlaps TAO:0001947 ! hyomandibular-otic region joint [Term] id: TAO:0000190 name: ganglion def: "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] synonym: "ganglia" EXACT PLURAL [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000142 ! peripheral nervous system [Term] id: TAO:0000191 name: dentary def: "Dermal bone that is usually the anteriormost bone of the lower jaw, and that articulates with the angular, or anguloarticular bone, posteriorly, and carries part of the mandibular sensory canal and pore openings of the mandibular sensory canal on its lateral surface. The dentary is a paired bone." [TAO:GA_TG] synonym: "dentary bone" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch relationship: overlaps TAO:0001749 ! dentary-anguloarticular joint relationship: overlaps TAO:0001851 ! mandibular symphysis [Term] id: TAO:0000192 name: descending trigeminal root relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000193 name: diffuse nuclei relationship: OBO_REL:part_of TAO:0000165 ! inferior lobe [Term] id: TAO:0000194 name: dorsal accessory optic nucleus relationship: OBO_REL:part_of TAO:0000183 ! central pretectum [Term] id: TAO:0000195 name: dorsal depressor relationship: OBO_REL:part_of TAO:0000648 ! dorsal fin musculature [Term] id: TAO:0000196 name: dorsal hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly and the ventral hypohyal bone ventrally." [ZFIN:curator] synonym: "dorsohyal" EXACT [] synonym: "upper hypohyal" EXACT [] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001400 ! ceratohyal cartilage relationship: develops_from TAO:0001868 ! hypohyal cartilage relationship: overlaps TAO:0001843 ! ceratohyal-dorsal hypohyal joint relationship: overlaps TAO:0001845 ! dorsal hypohyal-ventral hypohyal joint relationship: overlaps TAO:0001847 ! dorsal hypohyal-urohyal joint [Term] id: TAO:0000197 name: dorsal nucleus relationship: OBO_REL:part_of TAO:0000213 ! habenula [Term] id: TAO:0000199 name: dorsal periventricular hypothalamus relationship: OBO_REL:part_of TAO:0000347 ! dorsal zone [Term] id: TAO:0000200 name: dorsal root ganglion def: "Trunk ganglion which is located adjacent to the spine on a dorsal root and contains the cell bodies of afferent sensory nerves." [ZFIN:curator] synonym: "dorsal root ganglia" EXACT [] synonym: "DRG" EXACT [] is_a: TAO:0001573 ! trunk ganglion relationship: develops_from TAO:0001024 ! trunk neural crest [Term] id: TAO:0000201 name: dorsal transverse synonym: "transversus dorsalis" EXACT [] relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000202 name: efferent branchial artery synonym: "EBA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000354 ! gill relationship: OBO_REL:part_of TAO:0005003 ! pharyngeal vasculature [Term] id: TAO:0000203 name: rhinosphenoid def: "An endochondral bone which is located anterior to the orbitosphenoid and medial to the paired lateral ethmoid. Rhinosphenoid is a median bone." [TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: OBO_REL:part_of TAO:0001410 ! orbital region [Term] id: TAO:0000204 name: esophagus synonym: "oesophagus" EXACT [] relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0000205 name: external ventral flexor relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000206 name: facial nerve motor nucleus synonym: "motor nucleus VII" EXACT [] synonym: "nVII" EXACT [] relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000207 name: fin musculature is_a: TAO:0000548 ! musculature system [Term] id: TAO:0000208 name: gall bladder is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0000339 ! digestive system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000209 name: lateral preglomerular nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000210 name: gigantocellular part of magnocellular preoptic nucleus relationship: OBO_REL:part_of TAO:0000470 ! preoptic area [Term] id: TAO:0000211 name: gill lamella synonym: "gill lamellae" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000354 ! gill [Term] id: TAO:0000212 name: granular eminence relationship: OBO_REL:part_of TAO:0000100 ! cerebellum [Term] id: TAO:0000213 name: habenula def: "The habenula relays impulses from limbic areas of the telencephalon to an unpaired midbrain nucleus, the interpeduncular nucleus." [ZFIN:curator] synonym: "habenulae" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000509 ! epithalamus [Term] id: TAO:0000214 name: hypobranchial vessel synonym: "hypobranchial vessels" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0000215 name: inferior olive relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000216 name: infracarinalis relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0000217 name: inner ear def: "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)" [ZFIN:curator] synonym: "ear" EXACT [] synonym: "otic capsule" EXACT [] synonym: "otocyst" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: develops_from TAO:0000051 ! otic vesicle relationship: OBO_REL:part_of TAO:0001138 ! vestibuloauditory system [Term] id: TAO:0000219 name: intermediate reticular formation relationship: OBO_REL:part_of TAO:0000542 ! medial column [Term] id: TAO:0000220 name: lateral semicircular canal alt_id: TAO:0000361 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "horizontal semicircular canal" EXACT [] synonym: "lateral semicircular canals" EXACT [] synonym: "lateral semicircular duct" EXACT [] relationship: develops_from TAO:0000232 ! lateral semicircular canal primordium relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0000221 name: internal levator relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000222 name: isthmic primary nucleus relationship: OBO_REL:part_of TAO:0000433 ! sensory trigeminal nuclei [Term] id: TAO:0000223 name: infraorbital 1 def: "Infraorbital that is the first (anteriormost) bone of the infraorbital series." [ZFIN:curator] synonym: "lachrymal bone" RELATED [] synonym: "lacrimal bone" RELATED [] synonym: "lacrymal bone" RELATED [] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0000224 name: quadrate ventral process def: "Process that is the ventral, posteriorly-oriented bony extension of the quadrate." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000621 ! quadrate [Term] id: TAO:0000225 name: lateral crista primordium synonym: "lateral crista primordia" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000220 ! lateral semicircular canal [Term] id: TAO:0000226 name: lateral ethmoid def: "Endochondral bone that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001503 ! lamina orbitonasalis relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001608 ! autopalatine-lateral ethmoid joint relationship: overlaps TAO:0001679 ! mesethmoid-lateral ethmoid joint relationship: overlaps TAO:0001941 ! orbitosphenoid-lateral ethmoid joint relationship: overlaps TAO:0002032 ! lateral ethmoid-frontal joint [Term] id: TAO:0000227 name: lateral hypothalamic nucleus relationship: OBO_REL:part_of TAO:0000707 ! ventral zone [Term] id: TAO:0000228 name: lateral line primordium synonym: "lateral line primordia" EXACT PLURAL [] synonym: "llp" EXACT [] relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0000229 name: lateral olfactory tract is_a: TAO:0000597 ! telencephalic tracts [Term] id: TAO:0000230 name: longitudinal hypochordal relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000231 name: lateral recess relationship: OBO_REL:part_of TAO:0000161 ! third ventricle [Term] id: TAO:0000232 name: lateral semicircular canal primordium synonym: "lateral semicircular canal primordia" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0000233 name: lower oral valve relationship: OBO_REL:part_of TAO:0000695 ! labial cavities [Term] id: TAO:0000234 name: macula neglecta is_a: TAO:0000386 ! macula relationship: develops_from TAO:0000558 ! posterior macula relationship: OBO_REL:part_of TAO:0000559 ! otolith organ [Term] id: TAO:0000235 name: magnocellular superficial pretectal nucleus relationship: OBO_REL:part_of TAO:0000687 ! superficial pretectum [Term] id: TAO:0000236 name: mandibular muscle synonym: "mandibular muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001307 ! pharyngeal musculature relationship: OBO_REL:part_of TAO:0001595 ! pharyngeal arch 1 [Term] id: TAO:0000237 name: medial forebrain bundle diencephalon is_a: TAO:0000338 ! diencephalic tracts and commissures relationship: OBO_REL:part_of TAO:0005111 ! medial forebrain bundle [Term] id: TAO:0000238 name: medial olfactory tract is_a: TAO:0000597 ! telencephalic tracts [Term] id: TAO:0000239 name: mesocoracoid bone def: "Endochondral bone that articulates laterally with the medial surface of the cleithrum and ventro-medially with the scapula and coracoid. Meoscoracoid bone is a small, arch-like bone that develops from the mesocoracoid cartilage. Mesocoracoid bone is paired." [TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001537 ! mesocoracoid cartilage relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0000240 name: metapterygoid def: "Endochondral bone that forms the posteriormost element of the palatal complex. It overlies the quadrate and symplectic, posteriorly it articulates with the hyomandibula and anteriorly with the entopterygoid and ectopterygoid. It curves dorsally to form the posteroventral surface of the orbit. The metapterygoid is paired." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001399 ! palatoquadrate cartilage relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch relationship: overlaps TAO:0001803 ! quadrate-metapterygoid joint relationship: overlaps TAO:0001979 ! hyomandibula-metapterygoid joint [Term] id: TAO:0000241 name: midline column relationship: OBO_REL:part_of TAO:0000421 ! reticular formation [Term] id: TAO:0000242 name: male def: "Gonochoristic organism that can produce male gametes." [ZFIN:curator] synonym: "male organism" EXACT [] xref: CARO:0000027 is_a: TAO:0001094 ! body [Term] id: TAO:0000243 name: neuromast def: "Volcano-shaped lateral line sensory organ located in characteristic positions within the skin epithelium and containing hair cells and their support elements. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "lateral line neuromast" EXACT [] synonym: "neuromasts" EXACT PLURAL [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0000244 name: nucleus Edinger-Westphal relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000245 name: nucleus of the descending root relationship: OBO_REL:part_of TAO:0000433 ! sensory trigeminal nuclei [Term] id: TAO:0000246 name: nucleus taeniae relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000247 name: cranial nerve VIII synonym: "auditory nerve" EXACT [] synonym: "CN-VIII" EXACT [] synonym: "octaval nerve" EXACT [] synonym: "statoacoustic nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve [Term] id: TAO:0000248 name: magnocellular preoptic nucleus relationship: OBO_REL:part_of TAO:0000470 ! preoptic area [Term] id: TAO:0000249 name: cranial nerve I synonym: "CN-I" EXACT [] synonym: "olfactory nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0001149 ! olfactory system [Term] id: TAO:0000250 name: opercle def: "Dermal bone that forms the postero-dorsal part of the opercular series. The opercle articulates with the hyomandibula antero-dorsally and with the subopercle ventrally. The opercle is a paired bone." [TAO:GA_TG] comment: The opercle is usually a large, flat bone that may be partially covered by the posterior region of the preopercle. synonym: "opercles" EXACT PLURAL [] synonym: "operculare" EXACT [] synonym: "operculum" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000555 ! opercular flap relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch relationship: OBO_REL:part_of TAO:0001875 ! opercular series relationship: overlaps TAO:0001710 ! opercle-interopercle joint [Term] id: TAO:0000251 name: adipose fin def: "A fin that is fleshy, lacks supporting rays, and is located posterior to the dorsal fin." [TAO:wd] is_a: TAO:0000108 ! fin relationship: develops_from TAO:0000102 ! dorsal fin fold [Term] id: TAO:0000252 name: optic tract is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000253 name: orbitosphenoid def: "Large median unpaired cartilage bone consisting of two diverging plates. Positioned medial to the eye. The orbitosphenoid develops from the Trabeculae communis and forms the anterior and anterolateral boundary of the orbital foramen and constitutes a significant part of the sidewalls and floor of the cranial cavity. Bordered by the lateral ethmoid anteriorly, and the pterosphenoid posteriorly, The orbitosphenoid may extend ventrally to meet the parasphenoid. In the adult, the orbitosphenoid is fused ventrally to the parasphenoid via a thin sheet of bone." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001505 ! taenia marginalis anterior relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001794 ! orbitosphenoid-prootic joint relationship: overlaps TAO:0001831 ! pterosphenoid-orbitosphenoid joint relationship: overlaps TAO:0001941 ! orbitosphenoid-lateral ethmoid joint [Term] id: TAO:0000254 name: pancreas primordium relationship: OBO_REL:part_of TAO:0001371 ! pancreatic system [Term] id: TAO:0000255 name: paraxial mesoderm relationship: develops_from TAO:0000591 ! presumptive paraxial mesoderm relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0000256 name: pars subcommissuralis of V relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000257 name: pectoral fin cartilage def: "Cartilage which is part of the pectoral fin." [ZFIN:curator] is_a: TAO:0001543 ! paired fin cartilage relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton [Term] id: TAO:0000258 name: pelvic fin musculature synonym: "pelvic fins" EXACT [] is_a: TAO:0000207 ! fin musculature relationship: develops_from TAO:0001449 ! mesenchyme pelvic fin relationship: OBO_REL:part_of TAO:0001184 ! pelvic fin [Term] id: TAO:0000259 name: mandibular lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0000260 name: periventricular nucleus relationship: OBO_REL:part_of TAO:0000707 ! ventral zone [Term] id: TAO:0000261 name: pharyngohyoid relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000262 name: posterior semicircular canal alt_id: TAO:0000483 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "caudal vertical semicircular canal" EXACT [] synonym: "posterior semicircular canals" EXACT [] synonym: "posterior semicircular duct" EXACT [] relationship: develops_from TAO:0000412 ! posterior semicircular canal primordium relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0000263 name: precaudal vertebra def: "Post-Weberian vertebrae lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal. Bird and Mabee, 2003." [ZFIN:curator] synonym: "abdominal vertebrae" EXACT [] synonym: "precaudal vertebrae" EXACT PLURAL [] synonym: "trunk vertebrae" EXACT [] is_a: TAO:0001189 ! vertebra relationship: OBO_REL:part_of TAO:0001115 ! trunk [Term] id: TAO:0000264 name: preopercle def: "Dermal bone that is part of the opercular series and bears the preopercular sensory canal. The preopercle is a paired bone and typically L-shaped, with the horizontal limb overlying the interopercle and the vertical limb overlying the opercle." [TAO:wd] synonym: "preopercles" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000555 ! opercular flap relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch relationship: OBO_REL:part_of TAO:0001875 ! opercular series [Term] id: TAO:0000265 name: presumptive dorsal mesoderm relationship: OBO_REL:part_of TAO:0001377 ! presumptive mesoderm [Term] id: TAO:0000266 name: pretecto-mamillary tract synonym: "pretectomamillary tract" EXACT [] is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000267 name: primary olfactory fiber layer relationship: OBO_REL:part_of TAO:0000402 ! olfactory bulb [Term] id: TAO:0000268 name: anal fin proximal radial def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the distal radials." [ZFIN:curator] synonym: "basal radial of anal fin" EXACT [] synonym: "proximal anal-fin radial" EXACT [] is_a: TAO:0001671 ! anal fin radial relationship: OBO_REL:part_of TAO:0001420 ! anal fin pterygiophore [Term] id: TAO:0000269 name: inferior ventral flexor relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000270 name: maxilla def: "Dermal bone that forms part of the upper jaw, located antero-ventral to the premaxilla, The maxilla is a paired bone." [TAO:GA_TG] comment: In some teleosts, the maxilla is located postero-ventral to the supramaxilla. Commonly, the articular process of the maxilla articulates with the autopalatine and ethmoidal region antero-medially. The maxilla is usually the largest bone in the upper jaw assemblage. synonym: "maxillae" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch relationship: overlaps TAO:0001942 ! autopalatine-maxillary joint [Term] id: TAO:0000271 name: radial synonym: "radials" EXACT PLURAL [] is_a: TAO:0001591 ! endochondral bone [Term] id: TAO:0000272 name: respiratory system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000274 name: rostral octaval nucleus relationship: OBO_REL:part_of TAO:0000401 ! octaval nerve sensory nuclei [Term] id: TAO:0000275 name: rostral tegmental nucleus relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000276 name: rostrolateral thalamic nucleus of Butler & Saidel relationship: OBO_REL:part_of TAO:0000458 ! ventral thalamus [Term] id: TAO:0000277 name: scale def: "Dermal bone that is thin, flexible, and platelike, and that develops in overlapping skinfolds that cover the body and often the head of fish and the bases of the fins." [TAO:wd] synonym: "scales" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0001183 ! dermal superficial region [Term] id: TAO:0000278 name: secondary gustatory nucleus medulla oblongata relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000279 name: segmental plate def: "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995." [ZFIN:curator] synonym: "presomitic mesoderm" EXACT [] synonym: "PSM" EXACT [] relationship: OBO_REL:part_of TAO:0000255 ! paraxial mesoderm [Term] id: TAO:0000280 name: medial division relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0000281 name: hair cell posterior macula def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:curator] synonym: "sensory hair cells posterior macula" EXACT PLURAL [] is_a: TAO:0009366 ! hair cell relationship: develops_from TAO:0001099 ! immature hair cell posterior macula relationship: OBO_REL:part_of TAO:0000558 ! posterior macula [Term] id: TAO:0000282 name: sensory system synonym: "sensory systems" EXACT PLURAL [] is_a: TAO:0001439 ! anatomical system relationship: OBO_REL:part_of TAO:0000396 ! nervous system [Term] id: TAO:0000283 name: sternohyoid relationship: OBO_REL:part_of TAO:0000236 ! mandibular muscle [Term] id: TAO:0000284 name: subopercle def: "Dermal bone that is part of the opercular series, lying below the opercle. The subopercle is paired and is typically a thin bone." [TAO:wd] synonym: "subopercles" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000555 ! opercular flap relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch relationship: OBO_REL:part_of TAO:0001875 ! opercular series [Term] id: TAO:0000285 name: superficial adductor relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000286 name: superficial lateralis relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0000287 name: superior dorsal flexor relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000288 name: supracarinalis relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0000289 name: preopercle horizontal limb def: "A dermal bone that is the lower, horizontal portion of the preopercle bone." [TAO:wd] synonym: "preopercle horizontal arm" EXACT [] synonym: "preopercle lower limb" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000264 ! preopercle [Term] id: TAO:0000290 name: sphenoid region def: "Anatomical cluster that forms the floor and sidewalls of the middle part of the cranium." [TAO:MAH] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0000291 name: medial octavolateralis nucleus relationship: OBO_REL:part_of TAO:0000381 ! lateral line sensory nuclei [Term] id: TAO:0000292 name: surface structure def: "Organism subdivision which is the collection of anatomical structures on the body surface." [ZFIN:curator] is_a: TAO:0001308 ! organism subdivision [Term] id: TAO:0000293 name: synencephalon relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000294 name: torus lateralis relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000295 name: trigeminal ganglion def: "A prominent collection of touch-sensory neurons of the trigeminal or fifth cranial nerve, positioned beside the brain between the eye and the ear. Kimmel et al, 1995." [ZFIN:curator] synonym: "gV" EXACT [] is_a: TAO:0000013 ! cranial ganglia relationship: develops_from TAO:0000162 ! trigeminal placode [Term] id: TAO:0000296 name: uncrossed tecto-bulbar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000297 name: vagal lobe synonym: "motor nucleus X" EXACT [] synonym: "nX" EXACT [] relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000298 name: vent is_a: TAO:0000292 ! surface structure [Term] id: TAO:0000299 name: ventral entopeduncular nucleus V relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000300 name: ventral hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the ceratohyal bone posteriorly and the dorsal hypohyal bone dorsally." [ZFIN:curator] synonym: "lower hypohyal" EXACT [] synonym: "ventrohyal" EXACT [] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001400 ! ceratohyal cartilage relationship: develops_from TAO:0001868 ! hypohyal cartilage relationship: overlaps TAO:0001844 ! ceratohyal-ventral hypohyal joint relationship: overlaps TAO:0001845 ! dorsal hypohyal-ventral hypohyal joint relationship: overlaps TAO:0001846 ! inter-ventral hypohyal joint relationship: overlaps TAO:0001848 ! ventral hypohyal-urohyal joint [Term] id: TAO:0000301 name: medial rectus relationship: OBO_REL:part_of TAO:0000511 ! extraocular musculature [Term] id: TAO:0000302 name: ventral nucleus relationship: OBO_REL:part_of TAO:0000213 ! habenula [Term] id: TAO:0000303 name: female def: "Gonochoristic organism that can produce female gametes." [ZFIN:curator] synonym: "female organism" EXACT [] xref: CARO:0000028 is_a: TAO:0001094 ! body [Term] id: TAO:0000304 name: ventral telencephalon relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0000305 name: ventral sulcus relationship: OBO_REL:part_of TAO:0000032 ! hypothalamus [Term] id: TAO:0000306 name: ventrolateral thalamic nucleus relationship: OBO_REL:part_of TAO:0000458 ! ventral thalamus [Term] id: TAO:0000307 name: vestibulolateralis lobe relationship: OBO_REL:part_of TAO:0000100 ! cerebellum [Term] id: TAO:0000308 name: vomer def: "Dermal bone that underlies the mesethmoid and inserts in a fossa on the anteroventral surface of the parasphenoid." [ZFIN:curator] comment: The vomer is paired in some taxa (e.g., Amia) while unpaired in others (e.g., teleosts). synonym: "prevomer" EXACT [ZFIN:ZDB-PUB-961014-192] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: overlaps TAO:0001680 ! mesethmoid-vomer joint relationship: overlaps TAO:0001784 ! autopalatine-vomer joint [Term] id: TAO:0000309 name: E-YSL def: "The portion of the YSL that is outside of the blastoderm margin during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "external yolk syncytial layer" EXACT [ZFIN:ZDB-PUB-961014-576] relationship: OBO_REL:part_of TAO:0000088 ! YSL [Term] id: TAO:0000310 name: cranial nerve VI synonym: "abducens nerve" EXACT [] synonym: "CN-VI" EXACT [] is_a: TAO:0000641 ! cranial nerve [Term] id: TAO:0000311 name: adductor mandibulae complex relationship: develops_from TAO:0007049 ! adductor mandibulae relationship: OBO_REL:part_of TAO:0000236 ! mandibular muscle [Term] id: TAO:0000312 name: mesencephalic nucleus of trigeminal nerve relationship: OBO_REL:part_of TAO:0000433 ! sensory trigeminal nuclei [Term] id: TAO:0000313 name: anal inclinator relationship: OBO_REL:part_of TAO:0001154 ! anal fin musculature [Term] id: TAO:0000314 name: anterior semicircular canal alt_id: TAO:0000675 def: "One of three fluid-filled toroidal spaces, arranged orthogonally to each other in each ear, that detect angular acceleration. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "anterior semicircular canals" EXACT [] synonym: "anterior semicircular duct" EXACT [] synonym: "rostral vertical semicircular canal" EXACT [] relationship: develops_from TAO:0000469 ! anterior semicircular canal primordium relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0000315 name: asteriscus synonym: "lagenar otolith" EXACT [] synonym: "lagenolith" EXACT [] is_a: TAO:0001621 ! otolith relationship: OBO_REL:part_of TAO:0000374 ! lagena [Term] id: TAO:0000316 name: basihyal bone def: "Replacement bone that is median and is the anterior-most bone of the ventral hyoid arch." [ZFIN:curator] synonym: "basihyoid" EXACT [] synonym: "glossohyal" EXACT [] is_a: TAO:0001637 ! replacement bone is_a: TAO:0001891 ! basihyal element relationship: develops_from TAO:0001510 ! basihyal cartilage relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch [Term] id: TAO:0000317 name: postcranial axial skeleton def: "The post-cranial structural components forming the long axis of the vertebrate body; usually consists of the notochord, vertebrae, ribs, supraneurals, intermuscular bones, and unpaired median fins." [ZFIN:curator] synonym: "axial skeleton" EXACT [] is_a: TAO:0000434 ! skeletal system relationship: develops_from TAO:0001080 ! sclerotome [Term] id: TAO:0000318 name: brain stem/spinal tract and commissures synonym: "brain stem/spinal tracts and commissures" EXACT PLURAL [] is_a: TAO:0000145 ! CNS tracts and commissures [Term] id: TAO:0000319 name: branchiostegal membrane relationship: OBO_REL:part_of TAO:0000354 ! gill [Term] id: TAO:0000320 name: caudal commissure relationship: OBO_REL:part_of TAO:0000293 ! synencephalon [Term] id: TAO:0000321 name: caudal levator relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000322 name: caudal octaval nucleus relationship: OBO_REL:part_of TAO:0000401 ! octaval nerve sensory nuclei [Term] id: TAO:0000323 name: mesethmoid bone def: "Endochondral bone that extends forward from the frontal bones and articulates posterolaterally with the lateral ethmoids and the vomer and parasphenoid ventrally. The mesethmoid is an unpaired median bone." [ZFIN:curator] synonym: "ethmoid" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001321 ! neurocranial trabecula relationship: develops_from TAO:0001405 ! ethmoid cartilage relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001676 ! mesethmoid-premaxillary joint relationship: overlaps TAO:0001677 ! mesethmoid-nasal joint relationship: overlaps TAO:0001678 ! mesethmoid-frontal joint relationship: overlaps TAO:0001679 ! mesethmoid-lateral ethmoid joint relationship: overlaps TAO:0001680 ! mesethmoid-vomer joint [Term] id: TAO:0000324 name: caudal periventricular hypothalamus relationship: OBO_REL:part_of TAO:0000634 ! caudal zone [Term] id: TAO:0000325 name: caudal thalamic nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000326 name: caudal vertebra def: "Vertebrae bearing a hemal arch and spine. The most posterior caudal vertebrae support the caudal fin and are referred to as preural vertebrae." [ZFIN:curator] synonym: "caudal vertebrae" EXACT PLURAL [] is_a: TAO:0001189 ! vertebra [Term] id: TAO:0000327 name: central zone relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0000328 name: cephalic musculature synonym: "head muscles" EXACT [] is_a: TAO:0000548 ! musculature system [Term] id: TAO:0000329 name: chorion def: "The egg shell. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000020 ! extraembryonic structure [Term] id: TAO:0000330 name: cloacal chamber relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0000331 name: commissure infima of Haller relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000332 name: coracoid def: "Endochondral bone that articulates dorsally with the scapula and with the mesocoracoid when the latter is present, posteriorly with the lower two or three proximal radials and antero-ventrally with the cleithrum. The coracoid develops from the scapulo-coracoid cartilage. The coracoid is paired." [TAO:GA_TG, TAO:wd] comment: The coracoid is a triangular shaped-bone that usually has an anteriorly directed long process that may joins its counterpart in some fish groups. It may be perforated by the coracoid foramen or it may be notched dorsally and forms the scapulo-coracoid foramen together with a similar notch of the ventral margin of the scapula. is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001455 ! scapulocoracoid cartilage relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle relationship: overlaps TAO:0002040 ! inter-coracoid joint [Term] id: TAO:0000333 name: mesovarium relationship: OBO_REL:part_of TAO:0000403 ! ovary [Term] id: TAO:0000334 name: corpus mamillare relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000335 name: crossed tecto-bulbar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000336 name: preopercle vertical limb def: "A dermal bone that is the upper, vertical portion of the preopercle bone." [TAO:wd] synonym: "ascending arm of preopercle" EXACT [] synonym: "preopercle upper limb" EXACT [] synonym: "preopercle vertical arm " EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000264 ! preopercle [Term] id: TAO:0000337 name: basioccipital posterodorsal region def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000472 ! basioccipital relationship: OBO_REL:part_of TAO:0001620 ! lagenar capsule [Term] id: TAO:0000338 name: diencephalic tracts and commissures is_a: TAO:0000145 ! CNS tracts and commissures relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000339 name: digestive system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000340 name: dorsal entopeduncular nucleus relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000341 name: dorsal flexor relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000342 name: dorsal inclinator relationship: OBO_REL:part_of TAO:0000648 ! dorsal fin musculature [Term] id: TAO:0000343 name: dorsal nucleus of V relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000344 name: middle lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: develops_from TAO:0005118 ! middle lateral line primordium relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line relationship: OBO_REL:part_of TAO:0005114 ! middle lateral line system [Term] id: TAO:0000345 name: dorsal rectus relationship: OBO_REL:part_of TAO:0000511 ! extraocular musculature [Term] id: TAO:0000346 name: dorsal tegmental nucleus relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000347 name: dorsal zone relationship: OBO_REL:part_of TAO:0000032 ! hypothalamus [Term] id: TAO:0000348 name: exoccipital posteroventral region def: "Endochondral bone which is the posterodorsal region of the basioccipital bone." [TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000661 ! exoccipital relationship: OBO_REL:part_of TAO:0001620 ! lagenar capsule [Term] id: TAO:0000349 name: epaxialis relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0000350 name: epipleural def: "Epipleurals lie below the horizontal septum and are posteroventrally directed. There are ossified epipleurals in certain ostariophysans. In many lower elopocephalan teleosts including ostariophysans the epipleural bones develop an anterodorsal branch so that they are forked proximally." [ZFIN:curator] is_a: TAO:0000526 ! intermuscular bone [Term] id: TAO:0000351 name: olfactory region def: "Anatomical cluster that is located in the anterior region of the cranium and provides structural support for the peripheral olfactory organ." [TAO:MAH] synonym: "ethmoid region" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0000352 name: external cellular layer relationship: OBO_REL:part_of TAO:0000402 ! olfactory bulb [Term] id: TAO:0000353 name: fasciculus retroflexus synonym: "habenulointerpeduncular tract" EXACT [] is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000354 name: gill synonym: "gills" EXACT PLURAL [] is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0000272 ! respiratory system [Term] id: TAO:0000355 name: roof plate midbrain synonym: "roof plate midbrain" EXACT [] relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0000356 name: gill raker def: "Dermal bone that is a projection present on the inner surface of a branchial arch." [ZFIN:curator] synonym: "gill rakers" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0000354 ! gill [Term] id: TAO:0000357 name: glomerular layer relationship: OBO_REL:part_of TAO:0000402 ! olfactory bulb [Term] id: TAO:0000358 name: granular layer corpus cerebelli relationship: OBO_REL:part_of TAO:0000188 ! corpus cerebelli [Term] id: TAO:0000359 name: habenular commissure is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000360 name: heart tube relationship: develops_from TAO:0000149 ! primitive heart tube [Term] id: TAO:0000362 name: hypaxialis relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0000363 name: hypobranchial bone def: "Replacement bone that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] is_a: TAO:0001637 ! replacement bone is_a: TAO:0001893 ! hypobranchial element relationship: develops_from TAO:0001522 ! hypobranchial cartilage relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0000364 name: hypural def: "Laterally flattened haemal spine of an ural vertebra that lacks its arch and supports a few principal caudal lepidotrichia distally. A hypural may articulate or fuse with its ural centrum proximally or may lie ventral to the notochord. A hypural is an unpaired median bone that ossifies perichondrally. (Modified from Monod, 1968 and Arratia and Schultze, 1992)." [TAO:GA_TG, ZFIN:curator] synonym: "hyp" EXACT [] synonym: "hypuralia" EXACT [] synonym: "hypurals" EXACT PLURAL [] is_a: TAO:0001364 ! hemal spine relationship: OBO_REL:part_of TAO:0002067 ! upper hypural set relationship: OBO_REL:part_of TAO:0002068 ! lower hypural set relationship: OBO_REL:part_of TAO:0002162 ! ural vertebra [Term] id: TAO:0000365 name: nasal bone def: "Paired dermal bones, likened to a bone tube, positioned lateral to the supraethmoid. Nasal bones are transversed by the anterior most part of the supraorbital canals and bear one neuromast foramen in zebrafish Cubbage and Mabee, 1996." [ZFIN:curator] comment: Synonym adnasal used in Weitzman 1960, and synonym discussed in Vari 1995. synonym: "adnasal" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: overlaps TAO:0001677 ! mesethmoid-nasal joint [Term] id: TAO:0000366 name: inferior raphe nucleus synonym: "posterior raphe nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0001429 ! raphe nucleus [Term] id: TAO:0000367 name: joint def: "Anatomical cluster which consists of two or more adjacent bones or cartilages, which may be interconnected by various types of tissue." [TAO:pem] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0000368 name: integument def: "The outer protective barrier that separates the animal from its aquatic environment. Le Guellec et al, 2004." [ZFIN:curator] synonym: "skin" EXACT [] is_a: TAO:0000292 ! surface structure [Term] id: TAO:0000369 name: intermandibularis relationship: OBO_REL:part_of TAO:0000236 ! mandibular muscle [Term] id: TAO:0000370 name: intermediate thalamic nucleus relationship: OBO_REL:part_of TAO:0000458 ! ventral thalamus [Term] id: TAO:0000371 name: internal pharyngoclavicularis relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000372 name: interpeduncular nucleus medulla oblongata relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000373 name: dorsal fin actinotrichium def: "Actinotrichium that is part of the dorsal fin skeleton." [TAO:wd] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0001124 ! dorsal fin skeleton [Term] id: TAO:0000374 name: lagena relationship: OBO_REL:part_of TAO:0000559 ! otolith organ [Term] id: TAO:0000375 name: anal fin actinotrichium def: "Actinotrichium that is part of the anal fin skeleton." [TAO:wd] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0000167 ! anal fin skeleton [Term] id: TAO:0000376 name: infraorbital alt_id: TAO:0000489 def: "Dermal bone that is located anterior, ventral or posterior to the eye. Infraorbital bones may or may not contain the infraorbital sensory canal. Infraorbital bones are numbered starting with the anteriormost element of the series." [ZFIN:curator] synonym: "circumorbital series" EXACT [] synonym: "infraorbital series" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001410 ! orbital region relationship: OBO_REL:part_of TAO:0001709 ! infraorbital series [Term] id: TAO:0000379 name: lateral forebrain bundle diencephalon is_a: TAO:0000338 ! diencephalic tracts and commissures relationship: OBO_REL:part_of TAO:0007012 ! lateral forebrain bundle [Term] id: TAO:0000380 name: lateral lemniscus nucleus relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000381 name: lateral line sensory nuclei relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000382 name: acellular anatomical structure def: "Anatomical structure that consists of cell parts and cell substances and together does not constitute a cell or a tissue." [ZFIN:curator] xref: CARO:0000040 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0000383 name: lateral rectus relationship: OBO_REL:part_of TAO:0000511 ! extraocular musculature [Term] id: TAO:0000384 name: levator arcus palatini relationship: OBO_REL:part_of TAO:0000236 ! mandibular muscle [Term] id: TAO:0000385 name: lymphatic system is_a: TAO:0000010 ! cardiovascular system [Term] id: TAO:0000386 name: macula def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "maculae" EXACT PLURAL [] synonym: "sensory patch" EXACT [] relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0000387 name: nucleus motorius of nervi vagi relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000388 name: medial caudal lobe relationship: OBO_REL:part_of TAO:0000307 ! vestibulolateralis lobe [Term] id: TAO:0000389 name: medial funicular nucleus medulla oblongata relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000390 name: medial preglomerular nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000391 name: medial zone of D relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000392 name: median tuberal portion relationship: OBO_REL:part_of TAO:0000032 ! hypothalamus [Term] id: TAO:0000393 name: mesenchyme def: "A mesh-like cell arrangement, less compact than an epithelium. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue [Term] id: TAO:0000394 name: molecular layer corpus cerebelli relationship: OBO_REL:part_of TAO:0000188 ! corpus cerebelli [Term] id: TAO:0000395 name: muscle pioneer somite 2 synonym: "muscle pioneers somite 2" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000843 ! slow muscle cell somite 2 [Term] id: TAO:0000396 name: nervous system def: "A regulatory system of the body that consists of neurons and neuroglial cells. The nervous system is divided into two parts, the central nervous system (CNS) and the peripheral nervous system (PNS). (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000397 name: nucleus subglomerulosis relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000398 name: nucleus isthmi relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000399 name: secondary gustatory nucleus trigeminal nuclei relationship: OBO_REL:part_of TAO:0000433 ! sensory trigeminal nuclei [Term] id: TAO:0000400 name: occipital lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "supratemporal lateral line" EXACT [] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0000401 name: octaval nerve sensory nuclei relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000402 name: olfactory bulb relationship: OBO_REL:part_of TAO:0000079 ! telencephalon relationship: OBO_REL:part_of TAO:0001149 ! olfactory system [Term] id: TAO:0000403 name: ovary def: "Female reproductive organ." [ZFIN:curator] synonym: "ovaries" EXACT PLURAL [] is_a: TAO:0000413 ! gonad relationship: OBO_REL:part_of TAO:0000303 ! female relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0000404 name: paracommissural nucleus relationship: OBO_REL:part_of TAO:0000293 ! synencephalon [Term] id: TAO:0000405 name: cranial nerve III synonym: "CN-III" EXACT [] synonym: "occulomotor" EXACT [] synonym: "oculomotor nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000406 name: parvocellular superficial pretectal nucleus relationship: OBO_REL:part_of TAO:0000687 ! superficial pretectum [Term] id: TAO:0000407 name: pectoral girdle def: "Anatomical cluster of paired dermal and endochondral bones that attaches to the dorso-posterior part of the cranium, and support the radials and pectoral fin. It consists of two components: the primary pectoral girdle consisting of the endochondral coracoid, scapula and mesocoracoid bones, and the secondary pectoral girdle consisting of the dermal posttemporal, supracleithrum, cleithrum and poscleithrum(thra) bones." [TAO:wd] synonym: "scapular girdle" EXACT [] synonym: "shoulder girdle" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton [Term] id: TAO:0000408 name: periventricular nucleus of caudal tuberculum relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000410 name: postcleithrum def: "Dermal bone placed postero-medially to the supracleithrum and/or cleithrum." [TAO:GA_TG, TAO:wd] comment: Commonly, the postcleithra form a bilateral series including one to three flat, thin postcleithra of variable shapes (in teleosts). Basal teleosts may have a series up to seven postcleithra (see Arratia 1984 and 1997 and references herein). synonym: "postclavicle" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0000411 name: posterior crista primordium synonym: "posterior crista primordia" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000262 ! posterior semicircular canal [Term] id: TAO:0000412 name: posterior semicircular canal primordium synonym: "posterior semicircular canal primordia" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0000413 name: gonad def: "The part of the reproductive system that produces and releases eggs (ovary) or sperm (testis)." [ZFIN:curator] is_a: TAO:0001490 ! cavitated compound organ relationship: develops_from TAO:0001262 ! gonad primordium relationship: OBO_REL:part_of TAO:0000632 ! reproductive system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000414 name: presumptive cephalic mesoderm relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0000415 name: esophageal sphincter synonym: "oesophagial sphincter" EXACT [] relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000416 name: presumptive endoderm is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0000417 name: presumptive spinal cord synonym: "presumptive spinal cord neural keel" EXACT [] synonym: "presumptive spinal cord neural plate" EXACT [] synonym: "presumptive spinal cord neural rod" EXACT [] relationship: OBO_REL:part_of TAO:0007015 ! posterior presumptive neural plate [Term] id: TAO:0000418 name: pretectum relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000419 name: pterosphenoid def: "Endochondral bone that sutures with the orbitosphenoid anteriorly, the frontal bone dorsally and the sphenotic and prootic posteriorly. The pterosphenoid forms part of the orbitosphenoid region. The pterosphenoid bears foramina that accommodate branches of the trigeminal and facial nerves. The pterosphenoid is a paired bone." [ZFIN:curator] synonym: "alisphenoid" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001515 ! taenia marginalis posterior relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001831 ! pterosphenoid-orbitosphenoid joint relationship: overlaps TAO:0002033 ! prootic-pterosphenoid joint relationship: overlaps TAO:0002217 ! parasphenoid-pterosphenoid joint [Term] id: TAO:0000420 name: renal artery synonym: "renal arteries" EXACT PLURAL [] is_a: TAO:0000005 ! artery [Term] id: TAO:0000421 name: reticular formation relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000422 name: retroarticular def: "The retroarticular is a cartilage bone that forms at the posteroventral tip of Meckel's cartilage where the interoperculomandibular ligament attaches (5.1 mm NL). In the adult it is basically triangular in shape. The retroarticular is ligamentously connected to the interopercle and preopercle posteriorly and abuts the ventral shelf of the dentary anteriorly." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001205 ! Meckel's cartilage relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch [Term] id: TAO:0000423 name: anterior cardinal vein synonym: "ACV" EXACT [] synonym: "rostral cardinal veins" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0000096 ! cardinal system [Term] id: TAO:0000424 name: opercular lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0000425 name: anterior lateral line nerve def: "Cranial nerve which enters the brain between cranial nerves VI and VII; contains afferents and sensory efferents to the anterior lateral line ganglia." [ZFIN:curator] synonym: "rostral lateral line nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve is_a: TAO:0001479 ! lateral line nerve relationship: OBO_REL:part_of TAO:0001468 ! anterior lateral line system [Term] id: TAO:0000426 name: rostral parvocellular preoptic nucleus relationship: OBO_REL:part_of TAO:0000470 ! preoptic area [Term] id: TAO:0000427 name: rostral thalamic nucleus relationship: OBO_REL:part_of TAO:0000653 ! dorsal thalamus [Term] id: TAO:0000428 name: saccule relationship: OBO_REL:part_of TAO:0000559 ! otolith organ [Term] id: TAO:0000429 name: scaphium def: "Neural arch and Weberian ossicle that is reduced in size relative to other neural arches. Scaphium has a process which articulates with the first centrum." [ZFIN:curator] synonym: "second Weberian ossicle" EXACT [] synonym: "Weberian ossicle 2" EXACT [] is_a: TAO:0000461 ! Weberian ossicle is_a: TAO:0001066 ! neural arch relationship: OBO_REL:part_of TAO:0001167 ! vertebra 1 [Term] id: TAO:0000430 name: secondary gustatory tract relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000431 name: semicircular canal def: "Fluid-filled toroidal spaces, arranged orthogonally to each other in the ear, that detect angular accelerations. (See Anatomical Atlas entry for semicircular canals by T. Whitfield.)" [ZFIN:curator] synonym: "scc" EXACT [] synonym: "semicircular canals" EXACT PLURAL [] synonym: "semicircular duct" EXACT [] relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0000433 name: sensory trigeminal nuclei relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000434 name: skeletal system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000435 name: cranial nerve II def: "A collection of nerve cells that project visual information from the eyes to the brain. (Source: BioGlossary, www.Biology-Text.com)" [ZFIN:curator] synonym: "CN-II" EXACT [] synonym: "optic" EXACT [] synonym: "optic nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000436 name: spleen is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0000339 ! digestive system relationship: OBO_REL:part_of TAO:0001159 ! immune system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000437 name: caudal fin actinotrichium def: "Actinotrichium that is part of the caudal fin skeleton." [TAO:wd] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0000438 name: parhypural alt_id: TAO:0000562 def: "Haemal spine of last hemal arch that is pierced by the haemal canal through which the caudal vessels pass or haemal arch of preural centrum 1. Its distal part commonly supports lepidotrichia. The parhypural is an unpaired median haemal spine." [TAO:GA_TG] comment: The parhypural is frequently confused with the arch plus spine of preural centrum 1. synonym: "hemal spine of preural centrum 1" EXACT [] synonym: "parahypural" EXACT [] synonym: "parhyural" EXACT [] synonym: "phy" EXACT [] is_a: TAO:0001364 ! hemal spine relationship: OBO_REL:part_of TAO:0000557 ! preural 1 vertebra [Term] id: TAO:0000439 name: superficial pelvic abductor relationship: OBO_REL:part_of TAO:0000258 ! pelvic fin musculature [Term] id: TAO:0000440 name: superior raphe nucleus synonym: "anterior raphe nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0001429 ! raphe nucleus [Term] id: TAO:0000441 name: suprachiasmatic nucleus relationship: OBO_REL:part_of TAO:0000183 ! central pretectum [Term] id: TAO:0000442 name: supraneural bone def: "Endochondral bone that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [ZFIN:curator] synonym: "predorsal" EXACT [] synonym: "predorsal bone" EXACT [] synonym: "sn" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton [Term] id: TAO:0000443 name: supraorbital lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0000444 name: suspensorium synonym: "hyopalatine" EXACT [] synonym: "suspensoria" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001216 ! splanchnocranium [Term] id: TAO:0000445 name: optic tectum def: "The roof of the midbrain, morphologically visible by the end of the segmentation period. Kimmel et al, 1995." [ZFIN:curator] synonym: "dorsal midbrain" EXACT [] synonym: "tectal lobe" EXACT [] synonym: "tectum" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "tectum opticum" EXACT [] relationship: OBO_REL:part_of TAO:0001353 ! mesencephalic tectum [Term] id: TAO:0000446 name: tecto-bulbar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000447 name: tela chorioidea relationship: OBO_REL:part_of TAO:0000696 ! telencephalic ventricle [Term] id: TAO:0000448 name: tertiary gustatory nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000449 name: torus longitudinalis relationship: OBO_REL:part_of TAO:0001353 ! mesencephalic tectum [Term] id: TAO:0000450 name: trochlear motor nucleus synonym: "motor nucleus IV" EXACT [] synonym: "nIV" EXACT [] relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000451 name: upper oral valve relationship: OBO_REL:part_of TAO:0000695 ! labial cavities [Term] id: TAO:0000452 name: urohyal def: "Tendon bone that forms in the tendon of the sternohyoid muscles ventral to the anterior end of copula 1. The urohyal associates by ligaments to the ventral hypohyals or it articulates with the ventral hypohyals. The urohyal is an unpaired bone." [TAO:GA_TG, TAO:wd] comment: The urohyal forms as a single ossification in most teleosts, or as a paired ossification. synonym: "parurohyal" EXACT [TAO:Arratia_Schultze_1990] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: overlaps TAO:0001847 ! dorsal hypohyal-urohyal joint relationship: overlaps TAO:0001848 ! ventral hypohyal-urohyal joint [Term] id: TAO:0000453 name: cranial nerve X synonym: "CN-X" EXACT [] synonym: "vagal nerve" EXACT [] synonym: "vagus nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0001101 ! gustatory system [Term] id: TAO:0000454 name: ventral accessory optic nucleus relationship: OBO_REL:part_of TAO:0000183 ! central pretectum [Term] id: TAO:0000455 name: ventral flexor relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000456 name: ventral nucleus of V relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000457 name: ventral rectus synonym: "ventral recti" EXACT [] relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle relationship: OBO_REL:part_of TAO:0000511 ! extraocular musculature [Term] id: TAO:0000458 name: ventral thalamus synonym: "prethalamus" EXACT [ZFIN:ZDB-PUB-060207-11] relationship: OBO_REL:part_of TAO:0001215 ! thalamus [Term] id: TAO:0000459 name: ventromedial thalamic nucleus relationship: OBO_REL:part_of TAO:0000458 ! ventral thalamus [Term] id: TAO:0000460 name: adipose fin actinotrichium def: "Actinotrichium that is part of the adipose fin." [TAO:wd] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0000251 ! adipose fin [Term] id: TAO:0000461 name: Weberian ossicle def: "Bone that is an element associated with a Weberian vertebra." [ZFIN:curator] synonym: "Weberian ossicles" EXACT PLURAL [] is_a: TAO:0001514 ! bone relationship: OBO_REL:part_of TAO:0001871 ! Weberian ossicle set [Term] id: TAO:0000462 name: abductor hyohyoid relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000463 name: adductor relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000464 name: otic lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0000465 name: adductor operculi relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000466 name: anal depressor relationship: OBO_REL:part_of TAO:0001154 ! anal fin musculature [Term] id: TAO:0000467 name: anguloarticular def: "Dermal and endochondral compound bone that results from the fusion of the dermal angular and the endochondral articular and forms the posterior part of the lower jaw. It articulates with the dentary anteriorly and with the retroarticular postero-medially. The anguloarticular is paired." [ZFIN:curator] comment: The presence of an anguloarticular is interpreted as a synapomorphy of the Clupeocephala (Patterson and Rosen, 1977; Arratia, 1999). synonym: "angular" RELATED [] synonym: "angulo-articular" EXACT [] synonym: "articular" RELATED [] is_a: TAO:0001590 ! dermal bone is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001669 ! angular bone relationship: develops_from TAO:0001805 ! articular bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch relationship: overlaps TAO:0001749 ! dentary-anguloarticular joint relationship: overlaps TAO:0001802 ! quadrate-anguloarticular joint [Term] id: TAO:0000468 name: anterior crista primordium synonym: "anterior crista primordia" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000314 ! anterior semicircular canal [Term] id: TAO:0000469 name: anterior semicircular canal primordium synonym: "anterior semicircular canal primordia" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0000470 name: preoptic area def: "Area of the forebrain anterior to the posterior tuberculum and the hypothalamus and ventral to the ventral thalamus. See Figure 7, Atlas of Early Zebrafish Brain Development." [ZFIN:curator] synonym: "area praeoptica" EXACT [] synonym: "area preoptica" EXACT [] synonym: "preoptic region" EXACT [] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000471 name: atrium def: "One of four heart chambers." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0000472 name: basioccipital def: "Chondral bone that articulates with the exoccipitals dorsally, the prootics anteriorly, the parasphenoid ventrally, and the first free vertebra posteriorly. The basioccipital forms the floor of the foramen magnum. The basioccipital is an unpaired medial bone." [TAO:GA_TG] comment: In some teleosts the anterior vertebral centra fuse to the basioccipital forming a monopartite occipital condyle. is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001423 ! parachordal cartilage relationship: OBO_REL:part_of TAO:0001414 ! occipital region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001832 ! parasphenoid-basioccipital joint relationship: overlaps TAO:0002038 ! basioccipital-exoccipital joint [Term] id: TAO:0000473 name: trunk musculature synonym: "body musculature" EXACT [] is_a: TAO:0000548 ! musculature system [Term] id: TAO:0000474 name: intercalar def: "Small membrane bone homologous with a cartilage bone in more basal fishes (Patterson, 1977). Situated between the exoccipital and the pterotic at point of attachment of short ligament that originates on the ventral arm of the posttemporal." [ZFIN:curator] synonym: "opisthotic" EXACT [] is_a: TAO:0001645 ! membrane bone relationship: OBO_REL:part_of TAO:0000189 ! otic region [Term] id: TAO:0000475 name: paraventricular organ relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000476 name: branchiostegal ray def: "Dermal bone that is a flattened element that supports the branchiostegal membrane. Branchiostegal rays are generally present in a series articulating ventrally or ventro-medially with the anterior and posterior ceratobranchials whereas the most posterior ray articulates with the subopercle. The branchiostegal ray is paired." [ZFIN:curator] comment: Although the branchiostegals are articulated or attached to the hyoid arch, they belong to the opercular series. Branchiostegal rays are of variable shape and number and their homology is problematic. Usually they are numbered from anterior to posterior elements, instead from posterior to anteriorly considering that the last element of the series is consistently associated to the subopercle. For a survey of branchiostegal rays see Mc Allister (1968). synonym: "branchiostegal rays" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: OBO_REL:part_of TAO:0001875 ! opercular series relationship: OBO_REL:part_of TAO:0002101 ! branchiostegal ray series relationship: overlaps TAO:0001849 ! epihyal-branchiostegal ray joint relationship: overlaps TAO:0001850 ! ceratohyal-branchiostegal ray joint [Term] id: TAO:0000477 name: posterior cardinal vein def: "Continuation of the caudal vein cranial to the anal pore. The cardinal vein splits into a pair of vessels in the cranial trunk, just caudal to the radix of the aorta. The posterior cardinals each empty into the common cardinal vein. " [ZFIN:curator] synonym: "axial vein" EXACT [] synonym: "caudal cardinal veins" EXACT [] synonym: "PCV" EXACT [] synonym: "postcardinal vein" EXACT [] is_a: TAO:0000082 ! vein relationship: develops_from TAO:0005077 ! vascular cord relationship: OBO_REL:part_of TAO:0000096 ! cardinal system relationship: OBO_REL:part_of TAO:0001073 ! axial vasculature relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0000479 name: caudal mesencephalo-cerebellar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000480 name: caudal octavolateralis nucleus relationship: OBO_REL:part_of TAO:0000381 ! lateral line sensory nuclei [Term] id: TAO:0000481 name: caudal preglomerular nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000482 name: caudal tuberal nucleus synonym: "posterior tuberal nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000484 name: celiacomesenteric artery is_a: TAO:0000005 ! artery [Term] id: TAO:0000485 name: central nucleus inferior lobe synonym: "central nucleus inferior lobes" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000165 ! inferior lobe [Term] id: TAO:0000486 name: parietal bone def: "Dermal bone that covers the otic region and may articulate with its antimere medially, with the frontal bone anteriorly, the pterotic laterally, the supraoccipital medio-posteriorly, and the epiotic and extrascapula latero-posteriorly. The parietal is a paired bone." [TAO:GA_TG] comment: The parietal is a flat, commonly squarish or rectangular bone. synonym: "postparietal" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: overlaps TAO:0002059 ! posttemporal-parietal joint [Term] id: TAO:0000487 name: central zone of D relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000488 name: ceratobranchial bone def: "Endochondral bone that is bilaterally paired and forms part of the ventral branchial arches." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone is_a: TAO:0001898 ! ceratobranchial element relationship: develops_from TAO:0001516 ! ceratobranchial cartilage relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0000490 name: commissura cerebelli relationship: OBO_REL:part_of TAO:0000100 ! cerebellum [Term] id: TAO:0000491 name: commissure of the caudal tuberculum is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000492 name: coracoradialis relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000493 name: decussation of medial funicular nucleus relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000494 name: deep white zone relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0000495 name: infraorbital 5 def: "Infraorbital that is the fifth bone of the infraorbital series." [ZFIN:curator] synonym: "dermosphenotic" RELATED [] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0000496 name: compound organ def: "Anatomical structure that has as its parts two or more multi-tissue structures of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona fide boundaries from other distinct anatomical structures of different types." [ZFIN:curator] synonym: "organ" EXACT [] xref: CARO:0000024 is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0001094 ! body [Term] id: TAO:0000497 name: pelvic adductor profundus relationship: OBO_REL:part_of TAO:0000258 ! pelvic fin musculature [Term] id: TAO:0000498 name: dilator operculi relationship: OBO_REL:part_of TAO:0000236 ! mandibular muscle [Term] id: TAO:0000499 name: dorsal arrector relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000500 name: dorsal erector relationship: OBO_REL:part_of TAO:0000648 ! dorsal fin musculature [Term] id: TAO:0000501 name: dorsal funiculus relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000502 name: dorsal motor nucleus trigeminal nerve synonym: "motor nucleus V" EXACT [] synonym: "nV" EXACT [] is_a: TAO:0001365 ! trigeminal motor nuclei [Term] id: TAO:0000503 name: dorsal oblique branchial muscle synonym: "dorsal oblique branchial muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000504 name: dorsal retractor relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000505 name: dorsal telencephalon relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0000506 name: dorsal zone of D relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000507 name: epineural def: "Some or all epineural bones ossify free from the neural arches in most teleosts. In some lower teleosts, e.g., Leptolepis, Hiodon, elopiforms and albuliforms, ossification proceeds from the attachment point of the ligament to the arch, and the epineural is a process of the neural arch. In many lower teleosts epineurals are forked proximally." [ZFIN:curator] is_a: TAO:0000526 ! intermuscular bone [Term] id: TAO:0000508 name: pelvic radial is_a: TAO:0000271 ! radial relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton [Term] id: TAO:0000509 name: epithalamus relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000510 name: external levatores relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000511 name: extraocular musculature is_a: TAO:0000328 ! cephalic musculature [Term] id: TAO:0000512 name: facial lobe relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000513 name: fast muscle cell somite 1 synonym: "fast muscle cells somite 1" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000924 ! myotome somite 1 [Term] id: TAO:0000514 name: frontal bone def: "Dermal bone that bears part of the supraorbital canal and usually covers a large area of the neurocranium occupying part of the ethmoidal, orbitosphenoid, and otic regions. Commonly, the frontal bone articulates with its antimere medially, with lateral ethmoid, orbitosphenoid and pterosphenoid ventrolaterally, with supraorbital bone(s), autosphenotic and pterotic laterally, and with parietal posteriorly." [ZFIN:curator] comment: The frontal bone may be paired or unpaired. The frontal bone of actinopterygians is homologous to the parietal of tetrapods. Actinopterygians do not have a frontal bone. For details, see Schultze (2008) and Wiley (2008). is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001410 ! orbital region relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001678 ! mesethmoid-frontal joint relationship: overlaps TAO:0001711 ! frontal-pterotic joint relationship: overlaps TAO:0001922 ! inter-frontal joint relationship: overlaps TAO:0002032 ! lateral ethmoid-frontal joint [Term] id: TAO:0000516 name: periventricular grey zone relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0000517 name: glossopharyngeal lobe relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000518 name: griseum centrale relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000519 name: hemal arch def: "Hemal arches extend ventrally from the centra of caudal and transitional vertebrae to enclose the caudal artery and vein. In cyprinids, the hemal arch forms directly in membrane bone." [ZFIN:curator] synonym: "haemal arch" EXACT [] synonym: "ventral arcocentrum" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001361 ! basiventral relationship: OBO_REL:part_of TAO:0000326 ! caudal vertebra [Term] id: TAO:0000520 name: horizontal commissure is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000521 name: hyoid muscle synonym: "hyoid muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001307 ! pharyngeal musculature relationship: OBO_REL:part_of TAO:0001596 ! pharyngeal arch 2 [Term] id: TAO:0000522 name: inferior hyohyoid relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000523 name: inferior reticular formation relationship: OBO_REL:part_of TAO:0000542 ! medial column [Term] id: TAO:0000524 name: infraorbital lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0000525 name: intercalarium def: "Neural arch and Weberian ossicle that has been modified in shape relative to other neural arches. Intercalarium includes three parts: an anterolateral process (the manubrium) which is embedded in the interossicular ligament and the ascending and articulating processes." [ZFIN:curator] synonym: "third Weberian ossicle" EXACT [] synonym: "Weberian ossicle 3" EXACT [] is_a: TAO:0000461 ! Weberian ossicle is_a: TAO:0001066 ! neural arch relationship: OBO_REL:part_of TAO:0001168 ! vertebra 2 [Term] id: TAO:0000526 name: intermuscular bone def: "Axial bone which is a segmental ossification that forms in the myoseptum." [ZFIN:curator] comment: Intermuscular bones are found in teleosts fishes only. is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton [Term] id: TAO:0000527 name: pharyngobranchial bone def: "Endochondral bone of the branchial arches located medial to the epibranchials." [ZFIN:curator] synonym: "infrapharyngobranchial" EXACT [] is_a: TAO:0001591 ! endochondral bone is_a: TAO:0001909 ! pharyngobranchial element relationship: develops_from TAO:0001533 ! pharyngobranchial cartilage relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0000528 name: interradialis relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000529 name: kidney is_a: TAO:0001490 ! cavitated compound organ relationship: OBO_REL:part_of TAO:0000163 ! renal system relationship: OBO_REL:part_of TAO:0001159 ! immune system relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0000530 name: lapillus synonym: "utricular otolith" EXACT [] synonym: "utriculith" EXACT [] is_a: TAO:0001621 ! otolith relationship: OBO_REL:part_of TAO:0000700 ! utricle [Term] id: TAO:0000531 name: lateral column relationship: OBO_REL:part_of TAO:0000421 ! reticular formation [Term] id: TAO:0000532 name: lateral division relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0000533 name: lateral funiculus relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000534 name: lateral longitudinal fasciculus alt_id: TAO:0000198 synonym: "lateral longitundinal fasciculus" EXACT [] relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000535 name: lateral reticular nucleus relationship: OBO_REL:part_of TAO:0000531 ! lateral column [Term] id: TAO:0000536 name: lateral zone of D relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000537 name: levator operculi relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000538 name: rib def: "Endochondral bone that is intersegmental and rod-shaped, forming in the peritoneal membrane and attached to the vertebral parapophyses. Ribs protect and support internal organs." [ZFIN:curator] synonym: "dorsal rib" EXACT [] synonym: "pleural rib" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0002100 ! rib series [Term] id: TAO:0000539 name: locus coeruleus relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000540 name: magnocellular octaval nucleus relationship: OBO_REL:part_of TAO:0000401 ! octaval nerve sensory nuclei [Term] id: TAO:0000541 name: marginal blastomere def: "Cells (incompletely cleaved before the YSL forms), located at the surface just at the rim of the blastodisc, external to the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] synonym: "marginal blastomeres" EXACT PLURAL [] is_a: TAO:0000093 ! blastomere [Term] id: TAO:0000542 name: medial column relationship: OBO_REL:part_of TAO:0000421 ! reticular formation [Term] id: TAO:0000543 name: medial longitudinal fasciculus relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000544 name: pectoral fin actinotrichium def: "Actinotrichium that is part of the pectoral fin." [TAO:wd] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton [Term] id: TAO:0000545 name: medulla oblongata relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0000546 name: mesonephric duct synonym: "Wolffian duct" EXACT [] relationship: OBO_REL:part_of TAO:0000163 ! renal system [Term] id: TAO:0000547 name: mouth is_a: TAO:0000292 ! surface structure relationship: develops_from TAO:0001290 ! stomodeum relationship: OBO_REL:part_of TAO:0000339 ! digestive system relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0000548 name: musculature system synonym: "muscle" EXACT [] synonym: "muscles" EXACT [] is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000549 name: posttemporal def: "Dermal bone of the secondary pectoral girdle that attaches the girdle to the skull. Its dorsal process attaches to the epiotic or epioccipital, the ventral process to the intercalar and the body articulates with the supracleithrum. The postotic sensory canal or lateral line runs within or lateral to bone." [TAO:GA_TG] comment: The posttemporal is commonly a Y-shaped bone with two elongate processes. The dorsal process may be equal or longer than the ventral process or the opposite. The ventral process may be absent in some teleosts. synonym: "post-temporal" EXACT [] synonym: "postemporal" EXACT [] synonym: "suprascapula" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: overlaps TAO:0002059 ! posttemporal-parietal joint [Term] id: TAO:0000550 name: naris synonym: "nares" EXACT PLURAL [] synonym: "nostril" EXACT [] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0000047 ! peripheral olfactory organ relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0000551 name: nucleus lateralis valvulae relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000552 name: nucleus ruber relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000553 name: oculomotor nucleus synonym: "motor nucleus III" EXACT [] synonym: "nIII" EXACT [] relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000554 name: olfactory epithelium def: "Nasal epithelium wherein ciliated olfactory receptor neurons, supporting cells, and basal cells are located." [ZFIN:curator] synonym: "nasal epithelium" EXACT [] synonym: "nasal sensory epithelium" EXACT [] relationship: develops_from TAO:0001431 ! primitive olfactory epithelium relationship: OBO_REL:part_of TAO:0000047 ! peripheral olfactory organ [Term] id: TAO:0000555 name: opercular flap synonym: "gill cover" EXACT [] synonym: "opercular apparatus" EXACT [] synonym: "operculum" EXACT [] is_a: TAO:0000292 ! surface structure [Term] id: TAO:0000556 name: optic chiasm is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000557 name: preural 1 vertebra def: "Last caudal vertebra identified as the point at which the caudal vessels bifurcate, leaving the protection of the haemal arches of the caudal vertebrae and running laterally to the hypurals. This vertebra bears, commonly, a well-developed haemal arch and its spine (parhypural)." [TAO:GA_TG] comment: The haemal arch may be fused to the centrum or not. In contrast, the neural arch and spine may be well developed, or rudimentary or absent in different teleost subgroups. synonym: "penultimate vertebra" EXACT [] synonym: "preural centrum 1" EXACT [] synonym: "pu1" EXACT [] synonym: "second last vertebra" EXACT [] is_a: TAO:0000734 ! preural vertebra [Term] id: TAO:0000558 name: posterior macula def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "pm" EXACT [] synonym: "posteromedial macula" EXACT [] synonym: "sensory patch" EXACT [] is_a: TAO:0000386 ! macula [Term] id: TAO:0000559 name: otolith organ synonym: "otolith organs" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0000560 name: oviduct relationship: OBO_REL:part_of TAO:0000303 ! female relationship: OBO_REL:part_of TAO:0000632 ! reproductive system [Term] id: TAO:0000561 name: parasphenoid def: "Dermal bone that forms part of the base of the skull and the lateral walls of the braincase through its ascending processes. It may articulate with the vomer anteriorly, the prootics and exoccipitals laterally, and the basioccipital posteriorly. The parasphenoid is an elongate median bone." [TAO:GA_TG] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001410 ! orbital region relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001832 ! parasphenoid-basioccipital joint relationship: overlaps TAO:0002217 ! parasphenoid-pterosphenoid joint [Term] id: TAO:0000563 name: pectoral fin musculature synonym: "pectoral fin muscle" EXACT [] is_a: TAO:0000207 ! fin musculature relationship: develops_from TAO:0001000 ! mesenchyme pectoral fin relationship: OBO_REL:part_of TAO:0001161 ! pectoral fin [Term] id: TAO:0000564 name: pelvic abductor profundus relationship: OBO_REL:part_of TAO:0000258 ! pelvic fin musculature [Term] id: TAO:0000565 name: pelvic girdle def: "Anatomical cluster that consists of the paired basipterygia which support the pelvic fin." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton [Term] id: TAO:0000566 name: posterior crista alt_id: TAO:0000478 def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "caudal crista" EXACT [] synonym: "pc" EXACT [] synonym: "posterior crista ampullaris" EXACT [] synonym: "posterior cristae" EXACT PLURAL [] synonym: "sensory patch" EXACT [] synonym: "sensory patches" EXACT [] relationship: OBO_REL:part_of TAO:0000262 ! posterior semicircular canal [Term] id: TAO:0000567 name: premaxilla def: "Dermal bone that forms the anteriormost element of the upper jaw. It articulates with the maxilla posterodorsally and its antimere medially. The premaxilla is paired." [ZFIN:curator] synonym: "premaxillae" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch relationship: overlaps TAO:0001676 ! mesethmoid-premaxillary joint relationship: overlaps TAO:0001950 ! inter-premaxillary joint [Term] id: TAO:0000568 name: presumptive blood is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0000569 name: presumptive hindbrain synonym: "presumptive rhombencephalon" EXACT [] relationship: OBO_REL:part_of TAO:0000146 ! presumptive brain relationship: OBO_REL:part_of TAO:0007015 ! posterior presumptive neural plate [Term] id: TAO:0000570 name: optic primordium alt_id: TAO:0000021 synonym: "eye field" EXACT [] relationship: OBO_REL:part_of TAO:0007024 ! anterior neural keel [Term] id: TAO:0000571 name: presumptive telencephalon relationship: OBO_REL:part_of TAO:0000131 ! neural keel [Term] id: TAO:0000573 name: internal cellular layer relationship: OBO_REL:part_of TAO:0000402 ! olfactory bulb [Term] id: TAO:0000574 name: presumptive diencephalon relationship: OBO_REL:part_of TAO:0000131 ! neural keel [Term] id: TAO:0000575 name: prootic def: "Endochondral bone that sutures with the pterosphenoid anteriorly, the sphenotic and pterotic dorsally, the parasphenoid ventrally, the basioccipital postero-ventrally, the exoccipital posteriorly, and occasionally, with the intercalar posteriorly. The dorsal edge of the prootic contributes to the hyomandibular facet. The prootic bears foramina that accommodate branches of the trigeminal and facial nerves. The prootic is a paired bone." [TAO:GA_TG] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001423 ! parachordal cartilage relationship: develops_from TAO:0001425 ! basal plate cartilage relationship: develops_from TAO:0001500 ! auditory capsule relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001794 ! orbitosphenoid-prootic joint relationship: overlaps TAO:0002033 ! prootic-pterosphenoid joint relationship: overlaps TAO:0002034 ! prootic-exoccipital joint [Term] id: TAO:0000576 name: pterotic def: "Endochondral bone that articulates with the autosphenotic anteriorly, the parietal dorsomedially, the prootic ventrally (and the intercalar occasionally), and the epiotic and exoccipital posteriorly. The pterotic encloses the horizontal semicircular canal of the inner ear. The lower edge of the pterotic contributes to the hyomandibular facet. The pterotic is paired." [ZFIN:curator] synonym: "autopterotic" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001500 ! auditory capsule relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0001711 ! frontal-pterotic joint [Term] id: TAO:0000577 name: renal portal vein is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0000578 name: anterior ceratohyal def: "Replacement bone that is bilaterally paired and articulates with the hypohyal cartilage or bone, dorsal and ventral hypohyals, and epihyal posteriorly." [ZFIN:curator] synonym: "anterohyal" EXACT [] synonym: "ceratohyal" EXACT [] synonym: "ceratohyal anterior" EXACT [] synonym: "ceratohyal bone" EXACT [] synonym: "rostral ceratohyal" EXACT [] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001400 ! ceratohyal cartilage relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: overlaps TAO:0001842 ! epihyal-ceratohyal joint relationship: overlaps TAO:0001843 ! ceratohyal-dorsal hypohyal joint relationship: overlaps TAO:0001844 ! ceratohyal-ventral hypohyal joint relationship: overlaps TAO:0001850 ! ceratohyal-branchiostegal ray joint [Term] id: TAO:0000579 name: rostral mesencephalo-cerebellar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000580 name: rostral preglomerular nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0000581 name: rostral tuberal nucleus synonym: "anterior tuberal nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0000707 ! ventral zone [Term] id: TAO:0000582 name: saccus dorsalis relationship: OBO_REL:part_of TAO:0000509 ! epithalamus [Term] id: TAO:0000583 name: scapula def: "Endochondral bone that is located medial to the cleithrum, and articulates ventrally with the coracoid, medially with the mesocoracoid when the later is present and posteriorly with the upper one to three proximal radials. The scapula develops from the scapulocoracoid cartilage and belongs to the primary pectoral girdle. It may be perforated by the scapular foramen or it may be notched ventrally and forms together with a similar notch of the coracoid the scapulocoracoid foramen." [TAO:GA_TG, TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001455 ! scapulocoracoid cartilage relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0000585 name: kinethmoid cartilage def: "Cranial cartilage which is a small median cartilage located between the premaxillae and anterodorsal to the ethmoid." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage [Term] id: TAO:0000586 name: preural 2 vertebra def: "Vertebra anterior to preural centrum 1; sometimes termed the 'antepenultimate' vertebra. Mabee and Bird, 2001." [ZFIN:curator] synonym: "antepenultimate vertebra" EXACT [] synonym: "preural centrum 2" EXACT [] synonym: "pu2" EXACT [] synonym: "third last vertebra" EXACT [] is_a: TAO:0000734 ! preural vertebra [Term] id: TAO:0000587 name: sphenotic def: "Endochondral bone that sutures with the pterosphenoid anteriorly, the prootic ventrally, the frontal bone dorso-medially, and the pterotic dorso-posteriorly. Occasionally the sphenotic sutures with the parietal bone. The sphenotic separates the orbital from the otic region. The sphenotic bears a large antero-lateral or lateral or ventro-lateral process that borders the postero-dorsal margin of the orbit. The sphenotic is a paired bone." [ZFIN:curator] comment: The lower edge of the sphenotic may contribute to the hyomandibular facet depending on the fish group. synonym: "autosphenotic" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001506 ! tectum synoticum relationship: develops_from TAO:0001515 ! taenia marginalis posterior relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0000588 name: statoacoustic (VIII) ganglion def: "The sensory ganglion of the ear. (See Anatomical Atlas entry for statoacoustic ganglion by T. Whitfield.)" [ZFIN:curator] synonym: "auditory ganglion" EXACT [] synonym: "gVIII" EXACT [] synonym: "sag" EXACT [] synonym: "statoacoustic ganglia" EXACT PLURAL [] is_a: TAO:0000013 ! cranial ganglia relationship: develops_from TAO:0000138 ! otic placode relationship: OBO_REL:part_of TAO:0001138 ! vestibuloauditory system [Term] id: TAO:0000589 name: sulcus ypsiloniformis relationship: OBO_REL:part_of TAO:0000505 ! dorsal telencephalon [Term] id: TAO:0000590 name: oral region relationship: OBO_REL:part_of TAO:0000547 ! mouth [Term] id: TAO:0000591 name: presumptive paraxial mesoderm relationship: OBO_REL:part_of TAO:0001377 ! presumptive mesoderm [Term] id: TAO:0000592 name: superficial pelvic adductor relationship: OBO_REL:part_of TAO:0000258 ! pelvic fin musculature [Term] id: TAO:0000593 name: superior reticular formation medial column relationship: OBO_REL:part_of TAO:0000542 ! medial column [Term] id: TAO:0000594 name: supracleithrum def: "Dermal bone that articulates dorsally with the posttemporal and ventrally with the cleithrum. Supracleithrum is part of the secondary pectoral girdle and commonly, carries part of the lateral line canal." [TAO:GA_TG, TAO:wd] comment: The dorsalmost postcleithrum or postcleithrum 1 may lie medial to the ventral part of the supracleithrum. The postotic canal or lateral line may run close to the dorsal margin or in the upper third or in the lowest third of the bone depending on the fish group. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0000595 name: supraoccipital def: "Endochondral bone that is located at the dorsal part of the occipital region of the cranium or the dorso-posterior part of the skull. It forms the dorsal margin of the foramen magnum. Commonly the supraoccipital articulates with the parietals anteriorly, the epiotics laterally, and the exoccipitals posteroventrally. The supraoccipital is an unpaired median bone." [TAO:GA_TG] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001506 ! tectum synoticum relationship: OBO_REL:part_of TAO:0001414 ! occipital region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0000596 name: pelvic fin actinotrichium def: "Actinotrichium that is part of the pelvic fin." [TAO:wd] is_a: TAO:0000089 ! actinotrichium relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton [Term] id: TAO:0000597 name: telencephalic tracts is_a: TAO:0000145 ! CNS tracts and commissures relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0000598 name: testis def: "Male reproductive organ." [ZFIN:curator] synonym: "testes" EXACT PLURAL [] is_a: TAO:0000413 ! gonad relationship: OBO_REL:part_of TAO:0000242 ! male relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0000599 name: torus semicircularis relationship: OBO_REL:part_of TAO:0001353 ! mesencephalic tectum [Term] id: TAO:0000600 name: cranial nerve IV synonym: "CN-IV" EXACT [] synonym: "trochlear" EXACT [] synonym: "trochlear nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000601 name: pretectal periventricular nucleus relationship: OBO_REL:part_of TAO:0000293 ! synencephalon [Term] id: TAO:0000602 name: uroneural def: "Neural arch that extends along the dorso-lateral surface of the last preural centra and/or ural centra and the notochord (Arratia & Schultze, 1992). An uroneural develops as a modification of the neural arch of an ural centrum (Patterson, 1968). The series of uroneurals may include from 7 to 1 elements that are numbered from rostrad to caudad. An uroneural is a paired membrane bone." [TAO:Arratia_Schultze_1992, TAO:Patterson_1968] comment: The presence of modified ural neural arches or uroneurals is interpreted as a synapomorphy of Teleostei. Uroneurals present some modifications in certain teleost subgroups and such specialized structures are named pleurostyle (e.g., ostarioclupeomorphs) and stegural (e.g., salmonids). is_a: TAO:0001066 ! neural arch relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0000603 name: valvula cerebelli synonym: "valvula cerebellum" EXACT [] relationship: OBO_REL:part_of TAO:0000100 ! cerebellum [Term] id: TAO:0000604 name: ventral aorta def: "Outflow artery from the heart to the aortic arches. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000005 ! artery [Term] id: TAO:0000605 name: ventral funiculus relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000606 name: ventral oblique branchial muscle synonym: "ventral oblique branchial muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000607 name: ventral rhombencephalic commissure brain stem relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000608 name: ventral transverse relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000609 name: ventrolateral nucleus relationship: OBO_REL:part_of TAO:0000599 ! torus semicircularis [Term] id: TAO:0000610 name: vertical myoseptum def: "Connective tissue partitions developing between the myotomes. Kimmel et al, 1995." [ZFIN:curator] synonym: "transverse myoseptum" EXACT [] is_a: TAO:0001089 ! myoseptum [Term] id: TAO:0000611 name: visceromotor column relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000612 name: protractor hyoidei def: "Muscle located on ventral side of the head, linking the ventral hyoid arch to the dentary. Innervated by ramus mandibularis V and ramus hyoides VII." [TAO:wd] comment: Source: Winterbottom, R. 1973. A Descriptive Synonymy of the Striated Muscles of the Teleostei. Proceedings of the Academy of Natural Sciences of Philadelphia, Vol. 125 (1973), pp. 225-317. synonym: "geniohyoideus" EXACT [] relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000614 name: abductor profundus relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000615 name: adductor arcus palatini relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000616 name: adductor profundus relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000617 name: anal erector relationship: OBO_REL:part_of TAO:0001154 ! anal fin musculature [Term] id: TAO:0000618 name: ansulate commissure relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000619 name: anterior crista alt_id: TAO:0000273 def: "Patches of thickened, pseudostratified epithelium of the inner ear, consisting of regular arrays of sensory hair cells interspersed with supporting cells. Each patch has its own charcteristic shape and polarity pattern. (See Anatomical Atlas entry for sensory patches of the ear by T. Whitfield.)" [ZFIN:curator] synonym: "ac" EXACT [] synonym: "anterior crista ampullaris" EXACT [] synonym: "anterior cristae" EXACT PLURAL [] synonym: "rostral crista" EXACT [] synonym: "sensory patch" EXACT [] synonym: "sensory patches" EXACT [] relationship: OBO_REL:part_of TAO:0000314 ! anterior semicircular canal [Term] id: TAO:0000620 name: autopalatine def: "Endochondral bone that is part of the antero-lateral region of the palate. Commonly, it articulates with the maxilla anterolaterally and with the ethmoidal region medially. It may also articulate with the dermopalatine ventro-laterally and with the entopterygoid posteriorly. The autopalatine is paired." [ZFIN:curator] comment: The cartilaginous autopalatine forms from the anterior palatoquadrate arch. Possession of a dorsomedial process, which abuts the ethmoid, is a unique feature shared by Cypriniformes (Fink and Fink, 1981). The palatine has two components, the autopalatine (derived from pars autopalatine) and the dermal component having teeth, the dermopalatine Arratia & Schultze 1990. The element in cypriniforms is only the cartilage part, so that it is more correct to name it autopalatine and not as palatine in general that it implies a fusion of elements (as in perciforms). synonym: "palatine bone" RELATED [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001399 ! palatoquadrate cartilage relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch relationship: overlaps TAO:0001608 ! autopalatine-lateral ethmoid joint relationship: overlaps TAO:0001784 ! autopalatine-vomer joint relationship: overlaps TAO:0001942 ! autopalatine-maxillary joint [Term] id: TAO:0000621 name: quadrate def: "Endochondral bone that commonly articulates with the ectopterygoid anteriorly, the metapterygoid dorsally, and the symplectic postero-medially. The quadrate is formed from the posterior part of the palatoquadrate cartilage, or pars quadrata. The quadrate is a paired bone." [TAO:GA_TG] comment: The quadrate commonly has a triangular shape, with its lower vertex, or condyle, for articulation with the lower jaw, and an elongate postero-ventral or postero-dorsal elongate process. The presence of an elongate postero-ventral or postero-dorsal process is a synapomorphy of teleosts (Arratia and Schultze, 1990; Arratia, 1999). is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001399 ! palatoquadrate cartilage relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch relationship: overlaps TAO:0001801 ! quadrate-hyomandibula joint relationship: overlaps TAO:0001802 ! quadrate-anguloarticular joint relationship: overlaps TAO:0001803 ! quadrate-metapterygoid joint [Term] id: TAO:0000622 name: barbel def: "Surface structure which is a tactile structure found in the branchial region. Barbels are covered with epidermis rich in taste buds, and are innervated by branches of the cranial nerves." [ZFIN:curator] synonym: "barble" EXACT [] is_a: TAO:0000292 ! surface structure relationship: develops_from TAO:0005119 ! barbel primordium relationship: OBO_REL:part_of TAO:0000368 ! integument relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0000623 name: basipterygium def: "Endochondral bone that is paired and supports the pelvic fin. The basipterygium has a posteromedial process called the ischiac process (Wietzman 1962)." [TAO:wd] synonym: "pelvic bone" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001539 ! basipterygium cartilage relationship: OBO_REL:part_of TAO:0000565 ! pelvic girdle relationship: overlaps TAO:0001939 ! inter-basipterygium joint [Term] id: TAO:0000624 name: brachium conjunctivium relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000625 name: branchial bar synonym: "branchial bars" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000056 ! pharynx [Term] id: TAO:0000626 name: bulbo-spinal tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000627 name: posterior ceratohyal def: "Replacement bone that is bilaterally paired and articulates anteriorly with the anterior ceratohyal." [ZFIN:curator] comment: Posterohyal is used in Rapp Py Daniel (1997). synonym: "caudal ceratohyal" EXACT [] synonym: "epihyal" EXACT [] synonym: "posterohyal" EXACT [] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001400 ! ceratohyal cartilage relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: overlaps TAO:0001841 ! interhyal-epihyal joint relationship: overlaps TAO:0001842 ! epihyal-ceratohyal joint relationship: overlaps TAO:0001849 ! epihyal-branchiostegal ray joint [Term] id: TAO:0000628 name: caudal fin musculature synonym: "tail fin" EXACT [] is_a: TAO:0000207 ! fin musculature relationship: OBO_REL:part_of TAO:0001058 ! caudal fin [Term] id: TAO:0000629 name: caudal motor nucleus relationship: OBO_REL:part_of TAO:0000713 ! abducens motor nuclei [Term] id: TAO:0000630 name: caudal parvocellular preoptic nucleus relationship: OBO_REL:part_of TAO:0000470 ! preoptic area [Term] id: TAO:0000631 name: caudal pretectal nucleus relationship: OBO_REL:part_of TAO:0000687 ! superficial pretectum [Term] id: TAO:0000632 name: reproductive system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0000633 name: caudal tuberculum synonym: "posterior tubercle" EXACT [] synonym: "posterior tuberculum" EXACT [] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000634 name: caudal zone relationship: OBO_REL:part_of TAO:0000392 ! median tuberal portion [Term] id: TAO:0000635 name: central pretectal nucleus relationship: OBO_REL:part_of TAO:0000183 ! central pretectum [Term] id: TAO:0000636 name: cerebellar crest relationship: OBO_REL:part_of TAO:0000291 ! medial octavolateralis nucleus [Term] id: TAO:0000637 name: claustrum cartilage def: "Postcranial axial cartilage and Weberian ossicle that is located dorsal to the scaphium. The claustrum cartilage is bilaterally paired." [ZFIN:curator] synonym: "first Weberian ossicle" EXACT [] is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0000638 name: commissura rostral, pars dorsalis relationship: OBO_REL:part_of TAO:0001108 ! anterior commissure [Term] id: TAO:0000639 name: commissure of the secondary gustatory nuclei relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000640 name: cornea relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0000641 name: cranial nerve def: "Twelve pairs of cranial nerves exit/enter the cranium through openings in the skull. The nerves contain efferent axons with motor and glandular functions, as well as afferent axons from cranial ganglia with sensory functions. The nerves are numbered in a rostral to caudal sequence, with the exception of the lateral line nerves." [ZFIN:curator] synonym: "cranial nerves" EXACT PLURAL [] is_a: TAO:0007009 ! nerve relationship: OBO_REL:part_of TAO:0000396 ! nervous system [Term] id: TAO:0000642 name: decussation of the medial octavolateralis nucleus relationship: OBO_REL:part_of TAO:0000381 ! lateral line sensory nuclei [Term] id: TAO:0000643 name: rostral cerebellar tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000644 name: dental plate relationship: OBO_REL:part_of TAO:0000547 ! mouth [Term] id: TAO:0000645 name: descending octaval nucleus relationship: OBO_REL:part_of TAO:0000401 ! octaval nerve sensory nuclei [Term] id: TAO:0000646 name: anal fin distal radial def: "Rod-like internal median skeletal support bones of the anal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] synonym: "distal anal fin radial" EXACT [] is_a: TAO:0001671 ! anal fin radial relationship: OBO_REL:part_of TAO:0001420 ! anal fin pterygiophore [Term] id: TAO:0000647 name: dorsal caudal thalamic nucleus synonym: "dorsal posterior thalamic nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0000653 ! dorsal thalamus [Term] id: TAO:0000648 name: dorsal fin musculature is_a: TAO:0000207 ! fin musculature relationship: OBO_REL:part_of TAO:0001173 ! dorsal fin [Term] id: TAO:0000649 name: dorsal horn spinal cord relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000650 name: dorsal motor root of V relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000651 name: dorsal pelvic arrector relationship: OBO_REL:part_of TAO:0000258 ! pelvic fin musculature [Term] id: TAO:0000652 name: dorsal root relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000653 name: dorsal thalamus synonym: "thalamus" EXACT [ZFIN:ZDB-PUB-060207-11] relationship: OBO_REL:part_of TAO:0001215 ! thalamus [Term] id: TAO:0000654 name: rostral motor nucleus relationship: OBO_REL:part_of TAO:0000713 ! abducens motor nuclei [Term] id: TAO:0000655 name: dorsomedial optic tract relationship: OBO_REL:part_of TAO:0000252 ! optic tract [Term] id: TAO:0000656 name: ectopterygoid def: "Dermal bone that forms the lateral border of the palate and articulates with the quadrate posteriorly, the entopterygoid medially and the dermopalatine and/or autopalatine antero-laterally. The ectopterygoid is a paired bone." [TAO:ga_tg, ZFIN:curator] comment: The ectopterygoid is often toothed. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch [Term] id: TAO:0000657 name: entopterygoid def: "Dermal bone that forms the ventro-medial part of the palate and the antero-ventral and ventral wall of the orbit. The entopterygoid is a paired bone." [TAO:GA_TG] synonym: "endopterygoid" EXACT [] synonym: "mesopterygoid" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch [Term] id: TAO:0000658 name: epibranchial bone def: "Pharyngeal arch bone that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone is_a: TAO:0001904 ! epibranchial element relationship: develops_from TAO:0001527 ! epibranchial cartilage relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0000660 name: epural def: "A free, modified neural spine of a preural or a ural vertebra that is placed between the last developed neural spine of a preural centrum and the dorsal axis (= anterior margin of first uroneural) of the caudal skeleton . An epural commonly supports one or more dorsal procurrent rays. An epural is an unpaired median perichondrally ossified bone." [TAO:Arratia and Schultze_1992] comment: The origin of the epurals is unclear, three hypotheses have been proposed: 1) The epurals are modified radials or dorsal radials; 2) the epurals are detached neural spines and may support fin rays; and 3) the epurals are a serial homologue of the supraneuralia. At least in teleosts the epural is a detached neural spine. For details see Schultze and Arratia (1989) and Arratia and Schultze (1992). synonym: " epiural apophysis" EXACT [] synonym: "epiural" EXACT [] is_a: TAO:0001336 ! neural spine relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0000661 name: exoccipital def: "Endochondral bone that articulates with the epiotic dorsally, the pterotic and intercalar laterally and the basioccipital medio-ventrally. The exoccipitals form the lateral borders of the foramen magnum and houses the foramina for the passage of the vagus and glossopharyngeal nerves, X and IX respectively. The exoccipital is a paired bone." [TAO:GA_TG] comment: In some teleosts the exoccipital dorsally contacts the supraoccipital directly or through connective tissue. is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001423 ! parachordal cartilage relationship: develops_from TAO:0001504 ! occipital arch cartilage relationship: OBO_REL:part_of TAO:0001414 ! occipital region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium relationship: overlaps TAO:0002034 ! prootic-exoccipital joint relationship: overlaps TAO:0002038 ! basioccipital-exoccipital joint [Term] id: TAO:0000662 name: external pharyngoclavicularis relationship: OBO_REL:part_of TAO:0000172 ! branchial muscle [Term] id: TAO:0000663 name: extrascapula alt_id: TAO:0001413 def: "Dermal canal-bearing bone placed at the dorso-posterior region of the skull roof, lying on the posterior region of the pterotic and parietals, or the pterotic and epioccipital, or on the pterotic, epioccipital and occipital bones." [TAO:GA_TG, TAO:wd] comment: When it is present, the paired series of extrascapular bones may include one pair or two pairs or two pairs plus a median one. The most lateral is named lateral extrascapula and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur. The medial and median extrascapulars carry the extrascapular or supratemporal canal. synonym: "extrascapular" EXACT [] synonym: "extrascapular bone" EXACT [] synonym: "scale bone" EXACT [] synonym: "supratemporal" EXACT [] synonym: "tabular" EXACT [TAO:Harrington_1955, TAO:Weitzman_1962] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0000664 name: cranial nerve VII synonym: "CN-VII" EXACT [] synonym: "facial nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0001101 ! gustatory system [Term] id: TAO:0000665 name: rostral root of abducens nerve relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000666 name: filamental artery synonym: "filamental arteries" EXACT PLURAL [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000667 ! gill filament relationship: OBO_REL:part_of TAO:0005003 ! pharyngeal vasculature [Term] id: TAO:0000667 name: gill filament def: "Branched region of the gill where respiratory exchange takes place. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000354 ! gill [Term] id: TAO:0000668 name: cranial nerve IX synonym: "CN-IX" EXACT [] synonym: "glossopharyngeal nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve relationship: OBO_REL:part_of TAO:0001101 ! gustatory system [Term] id: TAO:0000669 name: head kidney def: "The zebrafish head kidney consists of fused bilateral lobes located in the anterior part of the kidney. It is analogous to the mammalian bone marrow and the primary site of definitive hematopoiesis. Davidson and Zon 2004." [ZFIN:curator] synonym: "anterior kidney" EXACT [] synonym: "kidney marrow" EXACT [] is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0000529 ! kidney relationship: OBO_REL:part_of TAO:0001158 ! endocrine system relationship: OBO_REL:part_of TAO:0005023 ! hematopoietic system [Term] id: TAO:0000670 name: hepatic vein synonym: "hepatic veins" EXACT PLURAL [] is_a: TAO:0000082 ! vein [Term] id: TAO:0000671 name: horizontal myoseptum def: "A connective tissue partition developing at the apex of the chevron-shaped myotome and separating dorsal (epaxial) and ventral (hypaxial) body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001089 ! myoseptum [Term] id: TAO:0000672 name: hyomandibula def: "Replacement bone that is bilaterally paired and articulates with the neurocranium dorsally and the opercle posteriorly." [ZFIN:curator] comment: In most teleosts, there is a symplectic, and the hyomandibula articulates with it anteroventrally. synonym: "hyomandibular" EXACT [] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001422 ! hyosymplectic cartilage relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch relationship: overlaps TAO:0001801 ! quadrate-hyomandibula joint relationship: overlaps TAO:0001947 ! hyomandibular-otic region joint relationship: overlaps TAO:0001979 ! hyomandibula-metapterygoid joint [Term] id: TAO:0000673 name: hypobranchial artery def: "A pair of HA are connect one to each AA1. They run rostromedially until at the extreme rostro-ventral midline the two vessels merge and then run straight caudally along the ventral midline until they reach the cranial end of the ventral aorta (VA). There, the single HA passes just dorsal to the rostral end of the VA and then immediately splits again into a pair of HA. The paired HA continue caudally just to either side of the ventral midline. The HA provide blood supply to the ventral branchial region and the heart.sogai et al. 2001." [ZFIN:curator] synonym: "HA" EXACT [] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0005005 ! aortic arch 1 [Term] id: TAO:0000674 name: interopercle def: "Dermal bone that is part of the opercular series. It is located ventro-medially to the preopercle and anterior to the subopercle. It is joined to the posterior part of the lower jaw (retroarticular) by a ligament. The interopercle is paired." [TAO:wd] synonym: "interopercles" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000555 ! opercular flap relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch relationship: OBO_REL:part_of TAO:0001875 ! opercular series relationship: overlaps TAO:0001710 ! opercle-interopercle joint [Term] id: TAO:0000676 name: sagitta synonym: "saccular otolith" EXACT [] synonym: "sacculith" EXACT [] is_a: TAO:0001621 ! otolith relationship: OBO_REL:part_of TAO:0000428 ! saccule [Term] id: TAO:0000677 name: segmental intercostal artery synonym: "segmental intercostal arteries" EXACT PLURAL [] is_a: TAO:0000005 ! artery [Term] id: TAO:0000678 name: hair cell anterior macula def: "Specialized neuronal receptor cells of the lateral line and acoustico-vestibular systems. Kimmel et al, 1995. (Also see Anatomical Atlas entry for hair cells by T. Whitfield.)" [ZFIN:curator] synonym: "sensory hair cells anterior macula" EXACT PLURAL [] is_a: TAO:0009366 ! hair cell relationship: develops_from TAO:0001098 ! immature hair cell anterior macula relationship: OBO_REL:part_of TAO:0000168 ! anterior macula [Term] id: TAO:0000679 name: sensory root of facial nerve relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000680 name: sinoatrial valve is_a: TAO:0005065 ! heart valve relationship: develops_from TAO:0001317 ! endocardial cushion relationship: OBO_REL:part_of TAO:0000154 ! sinus venosus relationship: OBO_REL:part_of TAO:0000471 ! atrium [Term] id: TAO:0000681 name: neural postzygapophysis def: "Paired, dorsomedially directed processes on the posterior ends of the centra, ligamentously joined to the neural prezygapophyses of the immediately posterior vertebra." [ZFIN:curator] synonym: "neural postzygapophyses" EXACT PLURAL [] synonym: "neural postzygopophyses" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001066 ! neural arch [Term] id: TAO:0000682 name: spinal artery synonym: "spinal arteries" EXACT PLURAL [] is_a: TAO:0000005 ! artery [Term] id: TAO:0000683 name: subcommissural organ synonym: "SCO" EXACT [] relationship: OBO_REL:part_of TAO:0000293 ! synencephalon [Term] id: TAO:0000684 name: intertectal commissure relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0000685 name: superficial abductor relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000686 name: superficial grey and white zone synonym: "superficial grey and white zones" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0000687 name: superficial pretectum relationship: OBO_REL:part_of TAO:0000418 ! pretectum [Term] id: TAO:0000688 name: olfactory support cell synonym: "support cells" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000047 ! peripheral olfactory organ [Term] id: TAO:0000689 name: supracommissural nucleus of V relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000690 name: supraoptic commissure is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0000691 name: supraorbital bone def: "Dermal bone that is part of the dorsal or upper border or antero-dorsal border of the orbit. The supraorbital bone may contact the orbital margin of the frontal bone medially, the antorbital antero-ventrally and the dermosphenotic posteriorly. The supraorbital bone does not carry sensory canals. The supraorbital bone is paired." [TAO:GA_TG] comment: The supraorbital bone may be present as two or one bone in extant teleosts, although many of the advanced forms lack the bone. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001410 ! orbital region relationship: OBO_REL:part_of TAO:0001709 ! infraorbital series [Term] id: TAO:0000692 name: symplectic def: "Replacement bone that is bilaterally paired and articulates with the hyomandibula and the quadrate." [ZFIN:curator] comment: When the interhyal bone or cartilage is present it articulates at the articulation of the hyomandibula and symplectic. is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001422 ! hyosymplectic cartilage relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch [Term] id: TAO:0000693 name: tangential nucleus relationship: OBO_REL:part_of TAO:0000401 ! octaval nerve sensory nuclei [Term] id: TAO:0000694 name: ceratobranchial 5 tooth def: "Tooth that forms on ceratobranchial 5 cartilage or bone." [ZFIN:curator] comment: Ceratobranchial 5 teeth are the only teeth present in zebrafish and other cypriniforms. synonym: "pharyngeal teeth" EXACT [] is_a: TAO:0001625 ! tooth relationship: develops_from TAO:0005138 ! dental organ relationship: OBO_REL:part_of TAO:0000056 ! pharynx relationship: OBO_REL:part_of TAO:0001239 ! ceratobranchial 5 bone [Term] id: TAO:0000695 name: labial cavities relationship: OBO_REL:part_of TAO:0000339 ! digestive system [Term] id: TAO:0000696 name: telencephalic ventricle synonym: "lateral ventricle" EXACT [] synonym: "telencephalic vesicle" EXACT [] relationship: develops_from TAO:0001259 ! forebrain ventricle relationship: OBO_REL:part_of TAO:0000079 ! telencephalon relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0000697 name: cranial nerve V synonym: "CN-V" EXACT [] synonym: "trigeminal nerve" EXACT [] is_a: TAO:0000641 ! cranial nerve [Term] id: TAO:0000698 name: tripus def: "Endochondral bone, membrane bone, and Weberian ossicle that is an element of third vertebra. Anteriorly it attaches to the interosseus ligament and posteriorly it extends as a transformator process embedded in the tunica externa of the swimbladder." [ZFIN:curator] synonym: "fourth Weberian ossicle" EXACT [] synonym: "Weberian ossicle 4" EXACT [] is_a: TAO:0000461 ! Weberian ossicle is_a: TAO:0001591 ! endochondral bone is_a: TAO:0001645 ! membrane bone relationship: OBO_REL:part_of TAO:0001169 ! vertebra 3 [Term] id: TAO:0000699 name: entopterygoid vertical strut def: "Process that is the dorsally directed, vertical process of the entopterygoid. The strut sometimes articulates with the orbitosphenoid." [TAO:wd] comment: Fink and Fink 1981, present in gymnotoids. synonym: "endopterygoid vertical strut" EXACT [] synonym: "mesopterygoid vertical strut" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000657 ! entopterygoid [Term] id: TAO:0000700 name: utricle relationship: OBO_REL:part_of TAO:0000559 ! otolith organ [Term] id: TAO:0000701 name: ventral arrector relationship: OBO_REL:part_of TAO:0000563 ! pectoral fin musculature [Term] id: TAO:0000702 name: ventral horn spinal cord relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000703 name: ventral motor nucleus trigeminal nerve is_a: TAO:0001365 ! trigeminal motor nuclei [Term] id: TAO:0000704 name: ventral pelvic arrector relationship: OBO_REL:part_of TAO:0000258 ! pelvic fin musculature [Term] id: TAO:0000705 name: ventral root relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000706 name: posterior intestine def: "The posterior intestine has short longitudinally arranged epithelial folds which are similar to the colon of higher vertebrates. Wallace et al, 2005." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0001338 ! intestine [Term] id: TAO:0000707 name: ventral zone relationship: OBO_REL:part_of TAO:0000392 ! median tuberal portion [Term] id: TAO:0000708 name: ventrolateral optic tract relationship: OBO_REL:part_of TAO:0000252 ! optic tract [Term] id: TAO:0000709 name: vestibulo-spinal tract relationship: OBO_REL:part_of TAO:0000318 ! brain stem/spinal tract and commissures [Term] id: TAO:0000710 name: viscerosensory commissural nucleus of Cajal relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000711 name: DEL def: "A multilayer of deep cells of fairly uniform thickness that forms during early epiboly (at dome stage; upon conversion of the blastodisc to the blastoderm); during gastrulation the DEL (deep cell layer) gives rise to the epiblast and hypoblast. Kimmel et al, 1995." [ZFIN:curator] synonym: "deep cell layer" EXACT [ZFIN:ZDB-PUB-961014-576] synonym: "DEL cells" EXACT PLURAL [] is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0001473 ! deep blastomere relationship: OBO_REL:part_of TAO:0001176 ! blastoderm [Term] id: TAO:0000712 name: I-YSL def: "The portion of the YSL that lies deep to the blastoderm during epiboly. Kimmel et al, 1995." [ZFIN:curator] synonym: "internal yolk syncytial layer" EXACT [ZFIN:ZDB-PUB-961014-576] relationship: OBO_REL:part_of TAO:0000088 ! YSL [Term] id: TAO:0000713 name: abducens motor nuclei synonym: "motor nucleus VI" EXACT [] synonym: "nVI" EXACT [] relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000714 name: accessory pretectal nucleus relationship: OBO_REL:part_of TAO:0000183 ! central pretectum [Term] id: TAO:0000715 name: adductor hyohyoid relationship: OBO_REL:part_of TAO:0000521 ! hyoid muscle [Term] id: TAO:0000716 name: afferent branchial artery synonym: "ABA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000354 ! gill relationship: OBO_REL:part_of TAO:0005003 ! pharyngeal vasculature [Term] id: TAO:0000717 name: apical ectodermal ridge median fin fold is_a: TAO:0002146 ! apical ectodermal ridge relationship: OBO_REL:part_of TAO:0000040 ! median fin fold [Term] id: TAO:0000718 name: epaxial region somite 27 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000931 ! myotome somite 27 [Term] id: TAO:0000719 name: slow muscle cell somite 21 synonym: "slow muscle cells somite 21" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000929 ! myotome somite 21 [Term] id: TAO:0000720 name: slow muscle cell somite 24 synonym: "slow muscle cells somite 24" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000930 ! myotome somite 24 [Term] id: TAO:0000721 name: slow muscle cell somite 27 synonym: "slow muscle cells somite 27" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000931 ! myotome somite 27 [Term] id: TAO:0000722 name: slow muscle cell somite 3 synonym: "slow muscle cells somite 3" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000932 ! myotome somite 3 [Term] id: TAO:0000723 name: slow muscle cell somite 5 synonym: "slow muscle cells somite 5" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000933 ! myotome somite 5 [Term] id: TAO:0000724 name: slow muscle cell somite 8 synonym: "slow muscle cells somite 8" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000934 ! myotome somite 8 [Term] id: TAO:0000725 name: somite 11 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000726 name: somite 14 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000727 name: somite 17 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000728 name: somite 2 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000729 name: epaxial region somite 3 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000932 ! myotome somite 3 [Term] id: TAO:0000730 name: somite 23 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000731 name: somite 27 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000732 name: somite 3 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000733 name: somite 7 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000734 name: preural vertebra def: "Caudal vertebra that is one of the last caudal vertebrae anterior to the ural vertebrae that with its neural and haemal spines supports the procurrent caudal fin rays or lepidotrichia. The numbering of preural vertebrae is from caudal to rostral direction." [TAO:GA_TG] comment: The term preural vertebra was created by Nybelin (1963) for those vertebrae supporting caudal procurrent rays. For additional information see Arratia and Schultze (1992). Their neural and hemal arches may or may not be fused to their corresponding autocentrum. Fusion or separation of certain neural and/or haemal arches of preural centra is characteristic or certain teleosts subgroup. The boundary between preural and ural region is determined by the bifurcation of the four or five blood vessels running inside the hemal arches of the preural vertebrae (primary caudal artery, two secondary arterial trunks, primary caudal vein, and secondary subvertebral vein) (for details see Schultze & Arratia, 1989). The bifurcation of the caudal artery and vein was proposed as a landmark to homologize preural centrum 1 throughout actinopterygians (Nybelin, 1963). synonym: "caudal fin vertebra" EXACT [] synonym: "specialized centra/vertebrae" EXACT PLURAL [] is_a: TAO:0000326 ! caudal vertebra relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0000735 name: hemal postzygapophysis def: "Paired, ventromedially directed processes on the posterior ends of the centra, ligamentously joined to the hemal postzygapophyses of the immediately posterior vertebra. The most posterior caudal vertebrae lack hemal postzygapophyses." [ZFIN:curator] synonym: "haemal postzygapophysis" EXACT [] synonym: "hemal postygopophysis" EXACT [] synonym: "hemal postzygapophyses" EXACT PLURAL [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000519 ! hemal arch [Term] id: TAO:0000736 name: apical ectodermal ridge pectoral fin is_a: TAO:0002146 ! apical ectodermal ridge relationship: develops_from TAO:0000085 ! apical ectodermal ridge pectoral fin bud relationship: OBO_REL:part_of TAO:0001161 ! pectoral fin [Term] id: TAO:0000737 name: cranium def: "Skeletal system which is part of the skull, including the splanchnocranium, chondrocranium, and dermatocranium." [ZFIN:curator] synonym: "cranial skeleton" EXACT [] synonym: "skull" EXACT [] is_a: TAO:0000434 ! skeletal system relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0000738 name: dorsal oblique extraocular muscle synonym: "dorsal oblique extraocular muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000511 ! extraocular musculature [Term] id: TAO:0000739 name: epaxial region somite 11 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000801 ! myotome somite 11 [Term] id: TAO:0000740 name: epaxial region somite 5 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000933 ! myotome somite 5 [Term] id: TAO:0000741 name: epaxial region somite 14 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000044 ! myotome somite 14 [Term] id: TAO:0000742 name: epaxial region somite 17 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001015 ! myotome somite 17 [Term] id: TAO:0000743 name: epaxial region somite 2 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001016 ! myotome somite 2 [Term] id: TAO:0000744 name: epaxial region somite 22 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001017 ! myotome somite 22 [Term] id: TAO:0000745 name: epaxial region somite 25 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001018 ! myotome somite 25 [Term] id: TAO:0000746 name: epaxial region somite 28 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001019 ! myotome somite 28 [Term] id: TAO:0000747 name: epaxial region somite 30 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001020 ! myotome somite 30 [Term] id: TAO:0000748 name: epaxial region somite 6 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001021 ! myotome somite 6 [Term] id: TAO:0000749 name: epaxial region somite 9 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001022 ! myotome somite 9 [Term] id: TAO:0000750 name: fast muscle cell somite 10 synonym: "fast muscle cells somite 10" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001013 ! myotome somite 10 [Term] id: TAO:0000751 name: epaxial region somite 8 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000934 ! myotome somite 8 [Term] id: TAO:0000752 name: fast muscle cell somite 13 synonym: "fast muscle cells somite 13" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001014 ! myotome somite 13 [Term] id: TAO:0000753 name: fast muscle cell somite 16 synonym: "fast muscle cells somite 16" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000927 ! myotome somite 16 [Term] id: TAO:0000754 name: fast muscle cell somite 19 synonym: "fast muscle cells somite 19" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000928 ! myotome somite 19 [Term] id: TAO:0000755 name: fast muscle cell somite 21 synonym: "fast muscle cells somite 21" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000929 ! myotome somite 21 [Term] id: TAO:0000756 name: fast muscle cell somite 24 synonym: "fast muscle cells somite 24" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000930 ! myotome somite 24 [Term] id: TAO:0000757 name: fast muscle cell somite 27 synonym: "fast muscle cells somite 27" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000931 ! myotome somite 27 [Term] id: TAO:0000758 name: fast muscle cell somite 3 synonym: "fast muscle cells somite 3" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000932 ! myotome somite 3 [Term] id: TAO:0000759 name: fast muscle cell somite 5 synonym: "fast muscle cells somite 5" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000933 ! myotome somite 5 [Term] id: TAO:0000760 name: fast muscle cell somite 8 synonym: "fast muscle cells somite 8" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000934 ! myotome somite 8 [Term] id: TAO:0000761 name: basal plate midbrain synonym: "floor plate midbrain" EXACT [] synonym: "floorplate midbrain" EXACT [] relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0000762 name: facio-acoustic neural crest def: "Cranial neural crest that gives rise to the facio-acoustic ganglion." [ZFIN:curator] is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0000763 name: floor plate rhombomere 2 synonym: "floor plate r2" EXACT [] synonym: "floorplate r2" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0000764 name: floor plate rhombomere 5 synonym: "floor plate r5" EXACT [] synonym: "floorplate r5" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0000765 name: floor plate rhombomere 8 synonym: "floor plate r8" EXACT [] synonym: "floorplate r8" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0000153 ! rhombomere 8 [Term] id: TAO:0000766 name: granular layer valvula cerebelli relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0000767 name: hypaxial region somite 11 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000801 ! myotome somite 11 [Term] id: TAO:0000768 name: hypaxial region somite 14 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000044 ! myotome somite 14 [Term] id: TAO:0000769 name: hypaxial region somite 17 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001015 ! myotome somite 17 [Term] id: TAO:0000770 name: hypaxial region somite 2 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001016 ! myotome somite 2 [Term] id: TAO:0000771 name: hypaxial region somite 22 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001017 ! myotome somite 22 [Term] id: TAO:0000772 name: hypaxial region somite 25 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001018 ! myotome somite 25 [Term] id: TAO:0000773 name: fast muscle cell somite 12 synonym: "fast muscle cells somite 12" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000926 ! myotome somite 12 [Term] id: TAO:0000774 name: hypaxial region somite 28 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001019 ! myotome somite 28 [Term] id: TAO:0000775 name: hypaxial region somite 30 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001020 ! myotome somite 30 [Term] id: TAO:0000776 name: hypaxial region somite 6 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001021 ! myotome somite 6 [Term] id: TAO:0000777 name: hypaxial region somite 9 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001022 ! myotome somite 9 [Term] id: TAO:0000778 name: interneuron spinal cord synonym: "interneurons spinal cord" EXACT PLURAL [] is_a: TAO:0009248 ! neuron [Term] id: TAO:0000779 name: lateral forebrain bundle telencephalon is_a: TAO:0000597 ! telencephalic tracts relationship: OBO_REL:part_of TAO:0007012 ! lateral forebrain bundle [Term] id: TAO:0000780 name: lateral wall diencephalon relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000781 name: lateral wall rhombomere 1 relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 [Term] id: TAO:0000782 name: lateral wall rhombomere 4 relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 [Term] id: TAO:0000783 name: lateral wall rhombomere 7 relationship: OBO_REL:part_of TAO:0000949 ! rhombomere 7 [Term] id: TAO:0000784 name: fast muscle cell somite 15 synonym: "fast muscle cells somite 15" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000802 ! myotome somite 15 [Term] id: TAO:0000785 name: lateral wall telencephalon relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0000786 name: medial migration pathway mesenchyme relationship: OBO_REL:part_of TAO:0000999 ! mesenchyme derived from trunk neural crest [Term] id: TAO:0000787 name: mesenchyme derived from head neural crest is_a: TAO:0000113 ! head mesenchyme [Term] id: TAO:0000788 name: mesenchyme dorsal fin relationship: OBO_REL:part_of TAO:0001173 ! dorsal fin [Term] id: TAO:0000789 name: mesoderm pectoral fin bud relationship: OBO_REL:part_of TAO:0000141 ! pectoral fin bud [Term] id: TAO:0000790 name: muscle pioneer somite 10 synonym: "muscle pioneers somite 10" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001047 ! slow muscle cell somite 10 [Term] id: TAO:0000791 name: muscle pioneer somite 13 synonym: "muscle pioneers somite 13" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001048 ! slow muscle cell somite 13 [Term] id: TAO:0000792 name: muscle pioneer somite 16 synonym: "muscle pioneers somite 16" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001049 ! slow muscle cell somite 16 [Term] id: TAO:0000793 name: muscle pioneer somite 19 synonym: "muscle pioneers somite 19" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001050 ! slow muscle cell somite 19 [Term] id: TAO:0000794 name: muscle pioneer somite 22 synonym: "muscle pioneers somite 22" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000844 ! slow muscle cell somite 22 [Term] id: TAO:0000795 name: fast muscle cell somite 18 synonym: "fast muscle cells somite 18" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000803 ! myotome somite 18 [Term] id: TAO:0000796 name: muscle pioneer somite 25 synonym: "muscle pioneers somite 25" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000845 ! slow muscle cell somite 25 [Term] id: TAO:0000797 name: muscle pioneer somite 28 synonym: "muscle pioneers somite 28" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000846 ! slow muscle cell somite 28 [Term] id: TAO:0000798 name: muscle pioneer somite 30 synonym: "muscle pioneers somite 30" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000847 ! slow muscle cell somite 30 [Term] id: TAO:0000799 name: muscle pioneer somite 6 synonym: "muscle pioneers somite 6" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000848 ! slow muscle cell somite 6 [Term] id: TAO:0000800 name: muscle pioneer somite 9 synonym: "muscle pioneers somite 9" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000850 ! slow muscle cell somite 9 [Term] id: TAO:0000801 name: myotome somite 11 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000725 ! somite 11 [Term] id: TAO:0000802 name: myotome somite 15 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000852 ! somite 15 [Term] id: TAO:0000803 name: myotome somite 18 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000853 ! somite 18 [Term] id: TAO:0000804 name: myotome somite 20 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000156 ! somite 20 [Term] id: TAO:0000805 name: myotome somite 23 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000730 ! somite 23 [Term] id: TAO:0000806 name: fast muscle cell somite 20 synonym: "fast muscle cells somite 20" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000804 ! myotome somite 20 [Term] id: TAO:0000807 name: myotome somite 26 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000074 ! somite 26 [Term] id: TAO:0000808 name: myotome somite 29 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000981 ! somite 29 [Term] id: TAO:0000809 name: myotome somite 4 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000857 ! somite 4 [Term] id: TAO:0000810 name: myotome somite 7 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000733 ! somite 7 [Term] id: TAO:0000811 name: neural crest diencephalon is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0000812 name: neural crest telencephalon def: "Cranial neural crest that is part of the telencephalon." [ZFIN:curator] is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0000813 name: infraorbital lateral line neuromast def: "Neuromast that is part of the infraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast infraorbital" EXACT [] synonym: "neuromasts infraorbital" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000524 ! infraorbital lateral line [Term] id: TAO:0000814 name: opercular lateral line neuromast def: "Neuromast that is part of the opercular lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast opercular" EXACT [] synonym: "neuromasts opercular" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000424 ! opercular lateral line [Term] id: TAO:0000815 name: nucleus of the medial longitudinal fasciculus medulla oblongata relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000816 name: oral epithelium is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0000590 ! oral region [Term] id: TAO:0000817 name: fast muscle cell somite 23 synonym: "fast muscle cells somite 23" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000805 ! myotome somite 23 [Term] id: TAO:0000818 name: vagal neural crest def: "Vagal neural crest is adjacent to the first seven somites gives rise to both ganglionic and ectomesenchymal derivatives." [ZFIN:curator] synonym: "post-otic neural crest" EXACT [] relationship: OBO_REL:part_of TAO:0001024 ! trunk neural crest [Term] id: TAO:0000819 name: postcommissural nucleus of V central entopeduncular nucleus relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0000820 name: presumptive neuron neural tube synonym: "presumptive neurons neural tube" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0000821 name: primary neuron hindbrain synonym: "primary neurons hindbrain" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0000822 name: rhombomere 2 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r2" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001208 ! presumptive rhombomere 2 [Term] id: TAO:0000823 name: rhombomere 5 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r5" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001211 ! presumptive rhombomere 5 [Term] id: TAO:0000824 name: roof plate rhombomere 2 relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0000825 name: roof plate rhombomere 6 relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0000826 name: central nucleus torus semicircularis relationship: OBO_REL:part_of TAO:0000599 ! torus semicircularis [Term] id: TAO:0000827 name: fast muscle cell somite 26 synonym: "fast muscle cells somite 26" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000807 ! myotome somite 26 [Term] id: TAO:0000828 name: roof plate rhombomere 5 relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0000829 name: sclerotome somite 11 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000725 ! somite 11 [Term] id: TAO:0000830 name: sclerotome somite 14 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000726 ! somite 14 [Term] id: TAO:0000831 name: sclerotome somite 17 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000727 ! somite 17 [Term] id: TAO:0000832 name: sclerotome somite 2 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000728 ! somite 2 [Term] id: TAO:0000833 name: sclerotome somite 22 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000978 ! somite 22 [Term] id: TAO:0000834 name: sclerotome somite 25 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000980 ! somite 25 [Term] id: TAO:0000835 name: sclerotome somite 28 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000856 ! somite 28 [Term] id: TAO:0000836 name: sclerotome somite 30 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000157 ! somite 30 [Term] id: TAO:0000837 name: sclerotome somite 6 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000982 ! somite 6 [Term] id: TAO:0000838 name: fast muscle cell somite 29 synonym: "fast muscle cells somite 29" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000808 ! myotome somite 29 [Term] id: TAO:0000839 name: sclerotome somite 9 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000983 ! somite 9 [Term] id: TAO:0000840 name: slow muscle cell somite 11 synonym: "slow muscle cells somite 11" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000801 ! myotome somite 11 [Term] id: TAO:0000841 name: slow muscle cell somite 14 synonym: "slow muscle cells somite 14" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000044 ! myotome somite 14 [Term] id: TAO:0000842 name: slow muscle cell somite 17 synonym: "slow muscle cells somite 17" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001015 ! myotome somite 17 [Term] id: TAO:0000843 name: slow muscle cell somite 2 synonym: "slow muscle cells somite 2" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001016 ! myotome somite 2 [Term] id: TAO:0000844 name: slow muscle cell somite 22 synonym: "slow muscle cells somite 22" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001017 ! myotome somite 22 [Term] id: TAO:0000845 name: slow muscle cell somite 25 synonym: "slow muscle cells somite 25" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001018 ! myotome somite 25 [Term] id: TAO:0000846 name: slow muscle cell somite 28 synonym: "slow muscle cells somite 28" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001019 ! myotome somite 28 [Term] id: TAO:0000847 name: slow muscle cell somite 30 synonym: "slow muscle cells somite 30" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001020 ! myotome somite 30 [Term] id: TAO:0000848 name: slow muscle cell somite 6 synonym: "slow muscle cells somite 6" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001021 ! myotome somite 6 [Term] id: TAO:0000849 name: fast muscle cell somite 4 synonym: "fast muscle cells somite 4" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000809 ! myotome somite 4 [Term] id: TAO:0000850 name: slow muscle cell somite 9 synonym: "slow muscle cells somite 9" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001022 ! myotome somite 9 [Term] id: TAO:0000851 name: somite 12 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000852 name: somite 15 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000853 name: somite 18 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000854 name: somite 21 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000855 name: somite 24 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000856 name: somite 28 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000857 name: somite 4 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000858 name: somite 8 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000859 name: specialized hemal arch and spine synonym: "ha(pu)" EXACT [] synonym: "hemal arches (preural)" EXACT [ZFIN:ZDB-PUB-011008-1] synonym: "specialized haemal arch and spine" EXACT [] synonym: "specialized hemal arches and spines" EXACT PLURAL [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0000860 name: fast muscle cell somite 7 synonym: "fast muscle cells somite 7" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000810 ! myotome somite 7 [Term] id: TAO:0000861 name: ventral oblique extraocular muscle synonym: "ventral oblique extraocular muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000511 ! extraocular musculature [Term] id: TAO:0000862 name: caudal fin skeleton is_a: TAO:0001123 ! axial fin skeleton relationship: OBO_REL:part_of TAO:0001058 ! caudal fin [Term] id: TAO:0000863 name: dermatocranium def: "Anatomical cluster that is part of the cranium and composed of dermally derived bones." [ZFIN:curator] synonym: "dendrocranium" EXACT [] synonym: "dermal bone cranium" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0000864 name: epaxial region somite 1 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000924 ! myotome somite 1 [Term] id: TAO:0000865 name: epaxial region somite 12 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000926 ! myotome somite 12 [Term] id: TAO:0000866 name: epaxial region somite 15 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000802 ! myotome somite 15 [Term] id: TAO:0000867 name: epaxial region somite 18 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000803 ! myotome somite 18 [Term] id: TAO:0000868 name: epaxial region somite 20 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000804 ! myotome somite 20 [Term] id: TAO:0000869 name: epaxial region somite 23 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000805 ! myotome somite 23 [Term] id: TAO:0000870 name: epaxial region somite 26 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000807 ! myotome somite 26 [Term] id: TAO:0000871 name: floor plate diencephalon synonym: "floorplate diencephalon" EXACT [] is_a: TAO:0000022 ! floor plate relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0000872 name: epaxial region somite 29 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000808 ! myotome somite 29 [Term] id: TAO:0000873 name: epaxial region somite 4 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000809 ! myotome somite 4 [Term] id: TAO:0000874 name: epaxial region somite 7 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. immel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000810 ! myotome somite 7 [Term] id: TAO:0000875 name: facial neural crest def: "Cranial neural crest that is part of the facial region." [ZFIN:curator] is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0000876 name: fast muscle cell somite 11 synonym: "fast muscle cells somite 11" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000801 ! myotome somite 11 [Term] id: TAO:0000877 name: fast muscle cell somite 14 synonym: "fast muscle cells somite 14" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000044 ! myotome somite 14 [Term] id: TAO:0000878 name: fast muscle cell somite 17 synonym: "fast muscle cells somite 17" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001015 ! myotome somite 17 [Term] id: TAO:0000879 name: fast muscle cell somite 2 synonym: "fast muscle cells somite 2" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001016 ! myotome somite 2 [Term] id: TAO:0000880 name: fast muscle cell somite 22 synonym: "fast muscle cells somite 22" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001017 ! myotome somite 22 [Term] id: TAO:0000881 name: fast muscle cell somite 25 synonym: "fast muscle cells somite 25" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001018 ! myotome somite 25 [Term] id: TAO:0000882 name: floor plate rhombomere 1 synonym: "floor plate r1" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 [Term] id: TAO:0000883 name: fast muscle cell somite 28 synonym: "fast muscle cells somite 28" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001019 ! myotome somite 28 [Term] id: TAO:0000884 name: fast muscle cell somite 30 synonym: "fast muscle cells somite 30" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001020 ! myotome somite 30 [Term] id: TAO:0000885 name: fast muscle cell somite 6 synonym: "fast muscle cells somite 6" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001021 ! myotome somite 6 [Term] id: TAO:0000886 name: fast muscle cell somite 9 synonym: "fast muscle cells somite 9" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001022 ! myotome somite 9 [Term] id: TAO:0000887 name: floor plate neural rod synonym: "floorplate neural rod" EXACT [] is_a: TAO:0000022 ! floor plate relationship: OBO_REL:part_of TAO:0000133 ! neural rod [Term] id: TAO:0000888 name: floor plate rhombomere 3 synonym: "floor plate r3" EXACT [] synonym: "floorplate r3" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 [Term] id: TAO:0000889 name: floor plate rhombomere 6 synonym: "floor plate r6" EXACT [] synonym: "floorplate r6" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 [Term] id: TAO:0000890 name: floor plate spinal cord synonym: "floorplate spinal cord" EXACT [] is_a: TAO:0000022 ! floor plate relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000891 name: hypaxial region somite 1 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000924 ! myotome somite 1 [Term] id: TAO:0000892 name: hypaxial region somite 12 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000926 ! myotome somite 12 [Term] id: TAO:0000893 name: floor plate rhombomere 4 synonym: "floor plate r4" EXACT [] synonym: "floorplate r4" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 [Term] id: TAO:0000894 name: hypaxial region somite 15 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000802 ! myotome somite 15 [Term] id: TAO:0000895 name: hypaxial region somite 18 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000803 ! myotome somite 18 [Term] id: TAO:0000896 name: hypaxial region somite 20 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000804 ! myotome somite 20 [Term] id: TAO:0000897 name: hypaxial region somite 23 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000805 ! myotome somite 23 [Term] id: TAO:0000898 name: hypaxial region somite 26 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000807 ! myotome somite 26 [Term] id: TAO:0000899 name: hypaxial region somite 29 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000808 ! myotome somite 29 [Term] id: TAO:0000900 name: hypaxial region somite 4 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000809 ! myotome somite 4 [Term] id: TAO:0000901 name: hypaxial region somite 7 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000810 ! myotome somite 7 [Term] id: TAO:0000902 name: hypural musculature synonym: "hypural muscles" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000628 ! caudal fin musculature [Term] id: TAO:0000903 name: interpeduncular nucleus tegmentum relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000904 name: floor plate rhombomere 7 synonym: "floor plate r7" EXACT [] synonym: "floorplate r7" EXACT [] is_a: TAO:0001258 ! floor plate hindbrain relationship: OBO_REL:part_of TAO:0000949 ! rhombomere 7 [Term] id: TAO:0000905 name: lateral mesenchyme derived from mesoderm is_a: TAO:0000081 ! trunk mesenchyme [Term] id: TAO:0000906 name: lateral wall midbrain relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0000907 name: lateral wall rhombomere 2 relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0000908 name: lateral wall rhombomere 5 relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0000909 name: lateral wall rhombomere 8 relationship: OBO_REL:part_of TAO:0000153 ! rhombomere 8 [Term] id: TAO:0000910 name: medial forebrain bundle telencephalon is_a: TAO:0000597 ! telencephalic tracts relationship: OBO_REL:part_of TAO:0005111 ! medial forebrain bundle [Term] id: TAO:0000911 name: transverse process of neural arch 3 def: "Endochondral bone that is the anterodorsally oriented process of the third neural arch." [TAO:wd] synonym: "anterodorsal process of neural arch 3" EXACT [] synonym: "transverse process of the third vertebra" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001394 ! neural arch 3 [Term] id: TAO:0000912 name: mesenchyme median fin fold is_a: TAO:0000393 ! mesenchyme relationship: OBO_REL:part_of TAO:0000040 ! median fin fold [Term] id: TAO:0000913 name: molecular layer valvula cerebelli relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0000914 name: floor plate telencephalon synonym: "floorplate telencephalon" EXACT [] is_a: TAO:0000022 ! floor plate relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0000915 name: muscle pioneer somite 11 synonym: "muscle pioneers somite 11" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000840 ! slow muscle cell somite 11 [Term] id: TAO:0000916 name: muscle pioneer somite 14 synonym: "muscle pioneers somite 14" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000841 ! slow muscle cell somite 14 [Term] id: TAO:0000917 name: muscle pioneer somite 17 synonym: "muscle pioneers somite 17" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000842 ! slow muscle cell somite 17 [Term] id: TAO:0000918 name: muscle pioneer somite 20 synonym: "muscle pioneers somite 20" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000967 ! slow muscle cell somite 20 [Term] id: TAO:0000919 name: muscle pioneer somite 23 synonym: "muscle pioneers somite 23" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000969 ! slow muscle cell somite 23 [Term] id: TAO:0000920 name: muscle pioneer somite 26 synonym: "muscle pioneers somite 26" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000970 ! slow muscle cell somite 26 [Term] id: TAO:0000921 name: muscle pioneer somite 29 synonym: "muscle pioneers somite 29" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000971 ! slow muscle cell somite 29 [Term] id: TAO:0000922 name: muscle pioneer somite 4 synonym: "muscle pioneers somite 4" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000972 ! slow muscle cell somite 4 [Term] id: TAO:0000923 name: muscle pioneer somite 7 synonym: "muscle pioneers somite 7" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000973 ! slow muscle cell somite 7 [Term] id: TAO:0000924 name: myotome somite 1 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000072 ! somite 1 [Term] id: TAO:0000925 name: hypaxial region somite 10 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001013 ! myotome somite 10 [Term] id: TAO:0000926 name: myotome somite 12 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000851 ! somite 12 [Term] id: TAO:0000927 name: myotome somite 16 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000976 ! somite 16 [Term] id: TAO:0000928 name: myotome somite 19 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995.>" [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000977 ! somite 19 [Term] id: TAO:0000929 name: myotome somite 21 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000854 ! somite 21 [Term] id: TAO:0000930 name: myotome somite 24 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000855 ! somite 24 [Term] id: TAO:0000931 name: myotome somite 27 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000731 ! somite 27 [Term] id: TAO:0000932 name: myotome somite 3 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000732 ! somite 3 [Term] id: TAO:0000933 name: myotome somite 5 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000073 ! somite 5 [Term] id: TAO:0000934 name: myotome somite 8 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000858 ! somite 8 [Term] id: TAO:0000935 name: neural crest midbrain is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0000936 name: dorsal fin distal radial def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the lepidotrichia distally." [ZFIN:curator] is_a: TAO:0001672 ! dorsal fin radial relationship: OBO_REL:part_of TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0000937 name: hypaxial region somite 13 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0001014 ! myotome somite 13 [Term] id: TAO:0000938 name: central canal synonym: "neural lumen" EXACT [] relationship: OBO_REL:part_of TAO:0000075 ! spinal cord relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0000939 name: middle lateral line neuromast def: "Neuromast that is part of the middle lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast middle" EXACT [] synonym: "neuromasts middle" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000344 ! middle lateral line [Term] id: TAO:0000940 name: posterior lateral line neuromast def: "Neuromast that is part of the posterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast posterior" EXACT [] synonym: "neuromasts posterior" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: develops_from TAO:0001157 ! posterior lateral line primordium relationship: OBO_REL:part_of TAO:0000944 ! posterior lateral line [Term] id: TAO:0000941 name: nucleus of the medial longitudinal fasciculus synencephalon relationship: OBO_REL:part_of TAO:0000293 ! synencephalon [Term] id: TAO:0000942 name: paraxial mesenchyme is_a: TAO:0000081 ! trunk mesenchyme [Term] id: TAO:0000943 name: pectoral fin skeleton def: "Anatomical cluster that consists of the supporting endochondral proximal and distal radials and the dermal fins rays or lepidotrichia. The pectoral fin skeleton is located in the thoracic region of the body and articulates with the scapula and coracoid." [TAO:wd] is_a: TAO:0000027 ! paired fin skeleton relationship: OBO_REL:part_of TAO:0001161 ! pectoral fin [Term] id: TAO:0000944 name: posterior lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "pll" EXACT [] is_a: TAO:0001469 ! lateral line relationship: develops_from TAO:0001157 ! posterior lateral line primordium relationship: OBO_REL:part_of TAO:0001471 ! posterior lateral line system [Term] id: TAO:0000946 name: hypaxial region somite 16 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000927 ! myotome somite 16 [Term] id: TAO:0000947 name: dorsal fin proximal radial def: "Rod-like internal median skeletal support bones of the dorsal fin, which articulate with the distal radials." [ZFIN:curator] synonym: "basal radial of dorsal fin" EXACT [] is_a: TAO:0001672 ! dorsal fin radial relationship: OBO_REL:part_of TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0000948 name: rhombomere 3 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r3" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001213 ! presumptive rhombomere 3 [Term] id: TAO:0000949 name: rhombomere 7 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r7" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001209 ! presumptive rhombomere 7 [Term] id: TAO:0000950 name: roof plate rhombomere 3 relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0000951 name: roof plate rhombomere 7 relationship: OBO_REL:part_of TAO:0000949 ! rhombomere 7 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0000952 name: sclerotome somite 1 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000072 ! somite 1 [Term] id: TAO:0000953 name: sclerotome somite 12 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000851 ! somite 12 [Term] id: TAO:0000954 name: sclerotome somite 15 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000852 ! somite 15 [Term] id: TAO:0000955 name: sclerotome somite 18 def: "Medial ventral region of the somite that will form vertebral cartilages. immel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000853 ! somite 18 [Term] id: TAO:0000956 name: sclerotome somite 20 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000156 ! somite 20 [Term] id: TAO:0000957 name: hypaxial region somite 19 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000928 ! myotome somite 19 [Term] id: TAO:0000958 name: sclerotome somite 23 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000730 ! somite 23 [Term] id: TAO:0000959 name: sclerotome somite 26 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000074 ! somite 26 [Term] id: TAO:0000960 name: sclerotome somite 29 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000981 ! somite 29 [Term] id: TAO:0000961 name: sclerotome somite 4 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000857 ! somite 4 [Term] id: TAO:0000962 name: sclerotome somite 7 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000733 ! somite 7 [Term] id: TAO:0000963 name: slow muscle cell somite 1 synonym: "slow muscle cells somite 1" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000924 ! myotome somite 1 [Term] id: TAO:0000964 name: slow muscle cell somite 12 synonym: "slow muscle cells somite 12" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000926 ! myotome somite 12 [Term] id: TAO:0000965 name: slow muscle cell somite 15 synonym: "slow muscle cells somite 15" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000802 ! myotome somite 15 [Term] id: TAO:0000966 name: slow muscle cell somite 18 synonym: "slow muscle cells somite 18" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000803 ! myotome somite 18 [Term] id: TAO:0000967 name: slow muscle cell somite 20 synonym: "slow muscle cells somite 20" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000804 ! myotome somite 20 [Term] id: TAO:0000968 name: hypaxial region somite 21 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000929 ! myotome somite 21 [Term] id: TAO:0000969 name: slow muscle cell somite 23 synonym: "slow muscle cells somite 23" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000805 ! myotome somite 23 [Term] id: TAO:0000970 name: slow muscle cell somite 26 synonym: "slow muscle cells somite 26" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000807 ! myotome somite 26 [Term] id: TAO:0000971 name: slow muscle cell somite 29 synonym: "slow muscle cells somite 29" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000808 ! myotome somite 29 [Term] id: TAO:0000972 name: slow muscle cell somite 4 synonym: "slow muscle cells somite 4" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000809 ! myotome somite 4 [Term] id: TAO:0000973 name: slow muscle cell somite 7 synonym: "slow muscle cells somite 7" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000810 ! myotome somite 7 [Term] id: TAO:0000974 name: somite 10 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000975 name: somite 13 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000976 name: somite 16 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000977 name: somite 19 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000978 name: somite 22 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000979 name: hypaxial region somite 24 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000930 ! myotome somite 24 [Term] id: TAO:0000980 name: somite 25 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000981 name: somite 29 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000982 name: somite 6 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000983 name: somite 9 def: "Undifferentiated mesodermal component of early trunk or tail segment or metamere, derived from paraxial mesoderm; forms the myotome, sclerotome and perhaps dermatome. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000155 ! somite [Term] id: TAO:0000984 name: superior reticular formation tegmentum relationship: OBO_REL:part_of TAO:0000160 ! tegmentum [Term] id: TAO:0000985 name: ventral rhombencephalic commissure medulla oblongata relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0000986 name: hypaxial region somite 27 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000931 ! myotome somite 27 [Term] id: TAO:0000987 name: hypaxial region somite 3 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000932 ! myotome somite 3 [Term] id: TAO:0000988 name: hypaxial region somite 5 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000933 ! myotome somite 5 [Term] id: TAO:0000989 name: hypaxial region somite 8 def: "Somite-derived body wall muscle present ventral to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001085 ! hypaxial myotome region relationship: OBO_REL:part_of TAO:0000934 ! myotome somite 8 [Term] id: TAO:0000990 name: intermediate mesenchyme is_a: TAO:0000081 ! trunk mesenchyme [Term] id: TAO:0000991 name: epaxial region somite 10 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001013 ! myotome somite 10 [Term] id: TAO:0000992 name: lateral migration pathway mesenchyme relationship: OBO_REL:part_of TAO:0000999 ! mesenchyme derived from trunk neural crest [Term] id: TAO:0000993 name: lateral wall neural rod relationship: OBO_REL:part_of TAO:0000133 ! neural rod [Term] id: TAO:0000994 name: lateral wall rhombomere 3 relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 [Term] id: TAO:0000995 name: lateral wall rhombomere 6 relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 [Term] id: TAO:0000996 name: lateral wall spinal cord relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0000997 name: medial funicular nucleus trigeminal nuclei relationship: OBO_REL:part_of TAO:0000433 ! sensory trigeminal nuclei [Term] id: TAO:0000998 name: mesenchyme derived from head mesoderm is_a: TAO:0000113 ! head mesenchyme [Term] id: TAO:0000999 name: mesenchyme derived from trunk neural crest is_a: TAO:0000081 ! trunk mesenchyme [Term] id: TAO:0001000 name: mesenchyme pectoral fin is_a: TAO:0000393 ! mesenchyme relationship: develops_from TAO:0000789 ! mesoderm pectoral fin bud relationship: OBO_REL:part_of TAO:0001161 ! pectoral fin [Term] id: TAO:0001001 name: epaxial region somite 13 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0001014 ! myotome somite 13 [Term] id: TAO:0001002 name: motor axons peripheral relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0001003 name: muscle pioneer somite 12 synonym: "muscle pioneers somite 12" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000964 ! slow muscle cell somite 12 [Term] id: TAO:0001004 name: muscle pioneer somite 15 synonym: "muscle pioneers somite 15" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000965 ! slow muscle cell somite 15 [Term] id: TAO:0001005 name: muscle pioneer somite 18 synonym: "muscle pioneers somite 18" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000966 ! slow muscle cell somite 18 [Term] id: TAO:0001006 name: muscle pioneer somite 21 synonym: "muscle pioneers somite 21" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000719 ! slow muscle cell somite 21 [Term] id: TAO:0001007 name: muscle pioneer somite 24 synonym: "muscle pioneers somite 24" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000720 ! slow muscle cell somite 24 [Term] id: TAO:0001008 name: muscle pioneer somite 27 synonym: "muscle pioneers somite 27" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000721 ! slow muscle cell somite 27 [Term] id: TAO:0001009 name: muscle pioneer somite 3 synonym: "muscle pioneers somite 3" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000722 ! slow muscle cell somite 3 [Term] id: TAO:0001010 name: muscle pioneer somite 5 synonym: "muscle pioneers somite 5" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000723 ! slow muscle cell somite 5 [Term] id: TAO:0001011 name: muscle pioneer somite 8 synonym: "muscle pioneers somite 8" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000724 ! slow muscle cell somite 8 [Term] id: TAO:0001012 name: epaxial region somite 16 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000927 ! myotome somite 16 [Term] id: TAO:0001013 name: myotome somite 10 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000974 ! somite 10 [Term] id: TAO:0001014 name: myotome somite 13 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000975 ! somite 13 [Term] id: TAO:0001015 name: myotome somite 17 def: "Portion of the somite giving rise to body wall muscle masses. immel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000727 ! somite 17 [Term] id: TAO:0001016 name: myotome somite 2 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000728 ! somite 2 [Term] id: TAO:0001017 name: myotome somite 22 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000978 ! somite 22 [Term] id: TAO:0001018 name: myotome somite 25 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000980 ! somite 25 [Term] id: TAO:0001019 name: myotome somite 28 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000856 ! somite 28 [Term] id: TAO:0001020 name: myotome somite 30 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000157 ! somite 30 [Term] id: TAO:0001021 name: myotome somite 6 def: "Portion of the somite giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000982 ! somite 6 [Term] id: TAO:0001022 name: myotome somite 9 def: "Portion of the somite giving rise to body wall muscle masses. immel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000983 ! somite 9 [Term] id: TAO:0001023 name: epaxial region somite 19 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000928 ! myotome somite 19 [Term] id: TAO:0001024 name: trunk neural crest relationship: OBO_REL:part_of TAO:0000045 ! neural crest [Term] id: TAO:0001025 name: occipital lateral line neuromast def: "Neuromast that is part of the occipital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast occipital" EXACT [] synonym: "neuromasts occipital" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000400 ! occipital lateral line [Term] id: TAO:0001026 name: supraorbital lateral line neuromast def: "Neuromast that is part of the supraorbital lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast supraorbital" EXACT [] synonym: "neuromasts supraorbital" EXACT PLURAL [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0000443 ! supraorbital lateral line [Term] id: TAO:0001027 name: oral cavity synonym: "pharyngeal cavity" EXACT [] relationship: OBO_REL:part_of TAO:0000590 ! oral region [Term] id: TAO:0001028 name: hypurapophysis def: "Lateral process, spine-like or crest-like, at the lateral wall of the haemal arch of the parhypural that serves for insertion of the hypochordal longitudinal muscle. The process may contribute to the lateral protection of the parhypural foramen (where the caudal blood vessels exit the hemal arch) and the hypural foramen (where a caudal heart may be present). The hypurapophysis is paired." [ZFIN:curator] comment: The structure, the processus parhypurale, was given the name of hypurapophysis by Nursall (1963). Additional processes may be present on the lateral walls of hypurals 1 and 2 in some teleost subgroups. They are named primary, secondary hypurapophyses, etc. synonym: "hypurapophyses" EXACT PLURAL [] synonym: "parhypurapophyses" EXACT [] synonym: "parhypurapophyses processes" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000438 ! parhypural [Term] id: TAO:0001029 name: inner limiting membrane relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0001030 name: epaxial region somite 21 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000929 ! myotome somite 21 [Term] id: TAO:0001031 name: rhombomere 1 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r1" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001207 ! presumptive rhombomere 1 [Term] id: TAO:0001032 name: rhombomere 4 def: "Hindbrain segment or neuromere. Kimmel et al, 1995." [ZFIN:curator] synonym: "r4" EXACT [] is_a: TAO:0001064 ! rhombomere relationship: develops_from TAO:0001212 ! presumptive rhombomere 4 [Term] id: TAO:0001033 name: roof plate rhombomere 1 relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0001034 name: roof plate rhombomere 4 relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0001035 name: roof plate rhombomere 8 relationship: OBO_REL:part_of TAO:0000153 ! rhombomere 8 relationship: OBO_REL:part_of TAO:0001311 ! roof plate rhombomere [Term] id: TAO:0001036 name: sclerotome somite 10 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000974 ! somite 10 [Term] id: TAO:0001037 name: sclerotome somite 13 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000975 ! somite 13 [Term] id: TAO:0001038 name: sclerotome somite 16 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000976 ! somite 16 [Term] id: TAO:0001039 name: sclerotome somite 19 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000977 ! somite 19 [Term] id: TAO:0001040 name: epaxial region somite 24 def: "Somite-derived body wall muscle present dorsal to the horizontal myoseptum. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0001084 ! epaxial myotome region relationship: OBO_REL:part_of TAO:0000930 ! myotome somite 24 [Term] id: TAO:0001041 name: sclerotome somite 21 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000854 ! somite 21 [Term] id: TAO:0001042 name: sclerotome somite 24 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000855 ! somite 24 [Term] id: TAO:0001043 name: sclerotome somite 27 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000731 ! somite 27 [Term] id: TAO:0001044 name: sclerotome somite 3 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000732 ! somite 3 [Term] id: TAO:0001045 name: sclerotome somite 5 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000073 ! somite 5 [Term] id: TAO:0001046 name: sclerotome somite 8 def: "Medial ventral region of the somite that will form vertebral cartilages. Kimmel et al, 1995." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000858 ! somite 8 [Term] id: TAO:0001047 name: slow muscle cell somite 10 synonym: "slow muscle cells somite 10" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001013 ! myotome somite 10 [Term] id: TAO:0001048 name: slow muscle cell somite 13 synonym: "slow muscle cells somite 13" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001014 ! myotome somite 13 [Term] id: TAO:0001049 name: slow muscle cell somite 16 synonym: "slow muscle cells somite 16" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000927 ! myotome somite 16 [Term] id: TAO:0001050 name: slow muscle cell somite 19 synonym: "slow muscle cells somite 19" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000928 ! myotome somite 19 [Term] id: TAO:0001051 name: caudal division of the internal carotid artery synonym: "CaDI" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005081 ! internal carotid artery [Term] id: TAO:0001052 name: primordial hindbrain channel def: "The paired vessels that run along the lateral walls of the hindbrain and drain into the anterior cardinal veins. Isogai et al. (2002)" [ZFIN:curator] synonym: "medial head vein" EXACT [] synonym: "PHCB" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0001053 name: primitive internal carotid artery synonym: "PICA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0001054 name: lateral dorsal aorta def: "Connect the outflow of the aortic arches to the dorsal aorta. The place where the lateral dorsal aorta fuse is is called the radiax of the aorta. Isogai et al. 2001." [ZFIN:curator] synonym: "LDA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0001055 name: pronephric duct opening relationship: OBO_REL:part_of TAO:0000150 ! pronephric duct [Term] id: TAO:0001056 name: myotome def: "Portion of the somites giving rise to body wall muscle masses. Kimmel et al, 1995." [ZFIN:curator] synonym: "myomeres" EXACT [ZFIN:ZDB-PUB-961014-576] is_a: TAO:0001954 ! axial muscle relationship: develops_from TAO:0000155 ! somite relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0001057 name: intersegmental vein def: "Primary intersegmental vessels that are contacted by secondary angiogenic sprouts from the posterior cardinal vein and take on the characteristics of veins. These eventually link with other secondary sprouts from the posterior cardinal vein to form the parachordal vessel. Isogai et al. 2003." [ZFIN:curator] synonym: "ISV" EXACT [] is_a: TAO:0000082 ! vein is_a: TAO:0001285 ! intersegmental vessel [Term] id: TAO:0001058 name: caudal fin def: "The caudal fin is the most posterior median fin. It is composed of a complex of three modified centra and modified neural and hemal arches and spines. Mabee and Bird, 2001." [ZFIN:curator] synonym: "tail" EXACT [] synonym: "tail fin" EXACT [] is_a: TAO:0000108 ! fin relationship: develops_from TAO:0001069 ! ventral fin fold relationship: OBO_REL:part_of TAO:0001117 ! post-vent region [Term] id: TAO:0001059 name: cranial division of the internal carotid artery synonym: "CrDI" EXACT [] synonym: "rostral division of the internal carotid artery" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005081 ! internal carotid artery [Term] id: TAO:0001060 name: basidorsal def: "Basidorsals are bilaterally paired cartilages on the dorsolateral side of the notochord which are replaced by ossified neural arches or dorsal arcocentra. In otophysan fishes, basidorsal 1, bd2, bd3, and bd4 give rise to parts of the Weberian apparatus." [ZFIN:curator] synonym: "arcualia" EXACT [] is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0001061 name: intersegmental artery is_a: TAO:0000005 ! artery is_a: TAO:0001285 ! intersegmental vessel [Term] id: TAO:0001062 name: primitive mesencephalic artery def: "Branches dorsally from the cranial division of the internal carotid artery, then curves caudally along the dorsal medial wall of the eye capsule to drain into the PMBC just rostral to the midbrain hindbrain boundary" [ZFIN:curator] synonym: "PMsA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0001063 name: posterior caudal vein is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0005037 ! tail vasculature [Term] id: TAO:0001064 name: rhombomere def: "A segment of the developing hindbrain. Kimmel et al, 1995." [ZFIN:curator] synonym: "hindbrain segment" EXACT [] synonym: "neuromeres" EXACT [] synonym: "rhombomeres" EXACT PLURAL [] is_a: TAO:0001328 ! neuromere relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0001065 name: lateral mesoderm relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0001066 name: neural arch def: "A neural arch encloses the neural canal and typically meets its partner to form a neural spine. The neural arch can be a replacement ossification of the basidorsal cartilage or can form directly in membrane bone." [ZFIN:curator] synonym: "dorsal arcocentrum" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001060 ! basidorsal relationship: OBO_REL:part_of TAO:0001189 ! vertebra [Term] id: TAO:0001067 name: anterior cerebral vein synonym: "ACeV" EXACT [] synonym: "rostral cerebral vein" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0001068 name: mesencephalic artery def: "Develops from the proximal portion of the primitive mesencephalic artery. Isogai et al. 2001." [ZFIN:curator] synonym: "MsA" EXACT [] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0001062 ! primitive mesencephalic artery [Term] id: TAO:0001069 name: ventral fin fold synonym: "tail fin fold" EXACT [] synonym: "ventral fin" EXACT [] relationship: OBO_REL:part_of TAO:0000040 ! median fin fold [Term] id: TAO:0001070 name: presumptive pronephric mesoderm synonym: "nephron primordium" EXACT [] relationship: OBO_REL:part_of TAO:0001206 ! intermediate mesoderm [Term] id: TAO:0001071 name: presumptive retina relationship: OBO_REL:part_of TAO:0000050 ! optic vesicle [Term] id: TAO:0001072 name: thyroid follicle relationship: develops_from TAO:0001081 ! thyroid primordium relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0001073 name: axial vasculature is_a: TAO:0005249 ! vasculature [Term] id: TAO:0001074 name: taste bud synonym: "taste buds" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001101 ! gustatory system [Term] id: TAO:0001075 name: choroid fissure relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0001076 name: intestinal bulb def: "This anteriormost portion of the intestine has the most digestive enzymes and the greatest epithelial surface area. Wallace et al, 2005." [ZFIN:curator] synonym: "anterior intestine" EXACT [] relationship: OBO_REL:part_of TAO:0001338 ! intestine [Term] id: TAO:0001077 name: thymus primordium def: "A small outgrowth of the pharyngeal epithelium that is the site of lymphocyte cell production. Willett et al, 1999." [ZFIN:curator] synonym: "thymic rudiment" EXACT [] relationship: develops_from TAO:0000818 ! vagal neural crest relationship: develops_from TAO:0001104 ! pharyngeal endoderm relationship: OBO_REL:part_of TAO:0001159 ! immune system [Term] id: TAO:0001078 name: thymus relationship: develops_from TAO:0001077 ! thymus primordium relationship: OBO_REL:part_of TAO:0001159 ! immune system [Term] id: TAO:0001079 name: blood vasculature synonym: "blood vessels" EXACT [] synonym: "circulatory system" EXACT [] is_a: TAO:0001490 ! cavitated compound organ is_a: TAO:0005249 ! vasculature relationship: OBO_REL:part_of TAO:0000010 ! cardiovascular system [Term] id: TAO:0001080 name: sclerotome synonym: "sclerotomes" EXACT PLURAL [] relationship: develops_from TAO:0000155 ! somite [Term] id: TAO:0001081 name: thyroid primordium relationship: develops_from TAO:0001104 ! pharyngeal endoderm relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0001082 name: chordo neural hinge def: "Portion of tissue is a posterior to the developing notochord during tailbud extension." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000077 ! tail bud [Term] id: TAO:0001083 name: ventricular zone relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0001084 name: epaxial myotome region is_a: TAO:0001954 ! axial muscle relationship: OBO_REL:part_of TAO:0001056 ! myotome [Term] id: TAO:0001085 name: hypaxial myotome region synonym: "hypaxial muscle" EXACT [] is_a: TAO:0001954 ! axial muscle relationship: OBO_REL:part_of TAO:0001056 ! myotome [Term] id: TAO:0001086 name: muscle pioneer synonym: "muscle pioneers" EXACT PLURAL [] synonym: "non migratory adaxial cells" EXACT [] relationship: OBO_REL:part_of TAO:0009116 ! slow muscle cell [Term] id: TAO:0001089 name: myoseptum relationship: OBO_REL:part_of TAO:0001056 ! myotome [Term] id: TAO:0001093 name: unspecified def: "Annotation with this anatomy term indicates that a structure was not specified by the author." [ZFIN:curator] is_a: TAO:0100000 ! teleost anatomical entity [Term] id: TAO:0001094 name: body def: "Anatomical structure that is an individual member of a species." [ZFIN:curator] synonym: "multi-cellular organism" EXACT [] synonym: "whole organism" EXACT [] xref: CARO:0000003 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0001095 name: immature macula synonym: "immature maculae" EXACT PLURAL [] synonym: "immature sensory patch" EXACT [] synonym: "immature sensory patches" EXACT [] relationship: OBO_REL:part_of TAO:0000051 ! otic vesicle [Term] id: TAO:0001096 name: immature anterior macula relationship: OBO_REL:part_of TAO:0001095 ! immature macula [Term] id: TAO:0001097 name: immature posterior macula relationship: OBO_REL:part_of TAO:0001095 ! immature macula [Term] id: TAO:0001098 name: immature hair cell anterior macula synonym: "immature sensory hair cells anterior macula" EXACT PLURAL [] is_a: TAO:0009366 ! hair cell relationship: OBO_REL:part_of TAO:0001096 ! immature anterior macula [Term] id: TAO:0001099 name: immature hair cell posterior macula synonym: "immature sensory hair cells posterior macula" EXACT PLURAL [] is_a: TAO:0009366 ! hair cell relationship: OBO_REL:part_of TAO:0001097 ! immature posterior macula [Term] id: TAO:0001100 name: hepatic duct def: "A duct that carries bile from the liver to the small intestine." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0001101 name: gustatory system is_a: TAO:0000282 ! sensory system [Term] id: TAO:0001102 name: immature anterior otolith is_a: TAO:0000139 ! immature otolith [Term] id: TAO:0001103 name: immature posterior otolith is_a: TAO:0000139 ! immature otolith [Term] id: TAO:0001104 name: pharyngeal endoderm relationship: OBO_REL:part_of TAO:0000056 ! pharynx [Term] id: TAO:0001105 name: embryonic structure def: "Anatomical structure that is part of the embryo and is comprised of portions of tissue or cells." [ZFIN:curator] is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0001094 ! body [Term] id: TAO:0001106 name: pharyngeal pouch def: "Outpocketings of pharyngeal endoderm that interdigitate with the neural crest derived pharyngeal arches. The pouches later fuse with the surface ectoderm to form the gill slits. Crump et al, 2004." [ZFIN:curator] relationship: develops_from TAO:0001104 ! pharyngeal endoderm relationship: OBO_REL:part_of TAO:0000056 ! pharynx relationship: OBO_REL:part_of TAO:0001306 ! pharyngeal arch [Term] id: TAO:0001107 name: internal gill bud relationship: OBO_REL:part_of TAO:0000056 ! pharynx [Term] id: TAO:0001108 name: anterior commissure synonym: "commissura anterior" EXACT [] synonym: "commissura rostral" EXACT [] synonym: "rostral commissure" EXACT [] is_a: TAO:0000597 ! telencephalic tracts [Term] id: TAO:0001109 name: oocyte synonym: "egg" EXACT [] relationship: OBO_REL:part_of TAO:0001110 ! ovarian follicle [Term] id: TAO:0001110 name: ovarian follicle def: "Oocyte development of zebrafish has been divided into five stages based on morphological criteria and on physiological and biochemical events. Stage I follicles (less than 140 microns) are primary growth stage, stage II follicles (140-340 microns) are cortical alveolus stage, stage III (340-690 microns) are vitellogenesis, stage IV (690-730 microns) are oocyte maturation, and stage V follicles are matured egg. Selman et al, 1993." [ZFIN:curator] synonym: "egg follicle" EXACT [] relationship: OBO_REL:part_of TAO:0000403 ! ovary [Term] id: TAO:0001111 name: zona radiata synonym: "vitelline envelope" EXACT [] relationship: OBO_REL:part_of TAO:0001110 ! ovarian follicle [Term] id: TAO:0001112 name: granulosa cell layer is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0001110 ! ovarian follicle [Term] id: TAO:0001113 name: thecal cell layer is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0001110 ! ovarian follicle [Term] id: TAO:0001114 name: head def: "Organism subdivision which is the part of the body which consists of the cranial and pharygeal regions." [ZFIN:curator] is_a: TAO:0001308 ! organism subdivision [Term] id: TAO:0001115 name: trunk def: "Organism subdivision which is the part of the body posterior to the head and anterior to the tail." [ZFIN:curator] is_a: TAO:0001308 ! organism subdivision [Term] id: TAO:0001116 name: presumptive structure is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0001117 name: post-vent region def: "Organism subdivision which is the part of the body posterior to the vent which includes the anal and caudal fins." [ZFIN:curator] synonym: "tail" EXACT [] is_a: TAO:0001308 ! organism subdivision [Term] id: TAO:0001118 name: urogenital papilla def: "A protuberance in front of the gential pore and behind the vent. Mature females have a well developed urogenital papillae whilst in mature males it is poorly developed. Brion et al, 2004." [ZFIN:curator] synonym: "anal papilla" EXACT [] synonym: "anal papillae" EXACT [] synonym: "genital papilla" EXACT [] synonym: "UGP" EXACT [] synonym: "urogenital papillae" EXACT PLURAL [] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0000632 ! reproductive system [Term] id: TAO:0001119 name: dermis def: "A collagenous layer of the skin subjacent to the epidermis and covering the hypodermis. It contains various types of cells (e.g. fibroblasts, pigment cells, nerve, blood vessels and scales. Le Guellec et al, 2004." [ZFIN:curator] relationship: develops_from TAO:0000255 ! paraxial mesoderm relationship: develops_from TAO:0000787 ! mesenchyme derived from head neural crest relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0001120 name: neuroectoderm synonym: "neural ectoderm" EXACT [] synonym: "neurectoderm" EXACT [] relationship: OBO_REL:part_of TAO:0000016 ! ectoderm [Term] id: TAO:0001121 name: presumptive shield is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0001122 name: primary germ layer synonym: "embryonic germ layers" EXACT [] is_a: TAO:0001477 ! portion of tissue [Term] id: TAO:0001123 name: axial fin skeleton synonym: "unpaired fin skeleton" EXACT [] is_a: TAO:0000317 ! postcranial axial skeleton [Term] id: TAO:0001124 name: dorsal fin skeleton is_a: TAO:0001123 ! axial fin skeleton relationship: OBO_REL:part_of TAO:0001173 ! dorsal fin [Term] id: TAO:0001125 name: organizer inducing center def: "The dorsal marginal region of the YSL where maternal dorsal determinants localize. Participates in positioning the shield. Ho et al, 1999." [ZFIN:curator] synonym: "Nieuwkoop center" EXACT [] relationship: OBO_REL:part_of TAO:0000088 ! YSL [Term] id: TAO:0001126 name: noninvoluting endocytic marginal cell cluster def: "The NEM cell cluster lies in a superficial position of the dorsal blastoderm margin encompassing EVL cells and one or two layers of underlying deep cells. Unlike other marginal blastomeres, cells in this cluster do not participate in involution. Cooper et al, 1996." [ZFIN:curator] synonym: "NEM" EXACT [] synonym: "noninvoluting endocytic marginal cells" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000038 ! margin [Term] id: TAO:0001127 name: visual system is_a: TAO:0000282 ! sensory system [Term] id: TAO:0001128 name: pharyngeal pouch 1 is_a: TAO:0001106 ! pharyngeal pouch [Term] id: TAO:0001129 name: pharyngeal pouches 2-6 is_a: TAO:0001106 ! pharyngeal pouch [Term] id: TAO:0001130 name: pharyngeal pouch 2 is_a: TAO:0001129 ! pharyngeal pouches 2-6 [Term] id: TAO:0001131 name: pharyngeal pouch 3 is_a: TAO:0001129 ! pharyngeal pouches 2-6 [Term] id: TAO:0001132 name: pharyngeal pouch 6 is_a: TAO:0001129 ! pharyngeal pouches 2-6 [Term] id: TAO:0001133 name: pharyngeal pouch 5 is_a: TAO:0001129 ! pharyngeal pouches 2-6 [Term] id: TAO:0001134 name: pharyngeal pouch 4 is_a: TAO:0001129 ! pharyngeal pouches 2-6 [Term] id: TAO:0001135 name: neural tube synonym: "presumptive central nervous system" EXACT [] is_a: TAO:0001120 ! neuroectoderm relationship: develops_from TAO:0000133 ! neural rod [Term] id: TAO:0001136 name: hypodermis def: "A layer separating the inner face of the dermis from the subjacent muscle cells. It is covered on both sides by a basement membrane. It contains pigment cells. Le Guellec et al, 2004." [ZFIN:curator] synonym: "subcutis" EXACT [] relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0001137 name: ventral tooth row def: "Tooth row that is the ventralmost row of teeth on ceratobranchial 5 bone." [TAO:wd] is_a: TAO:0001667 ! tooth row [Term] id: TAO:0001138 name: vestibuloauditory system is_a: TAO:0000282 ! sensory system [Term] id: TAO:0001139 name: mediodorsal tooth row def: "Tooth row that is the mediodorsal row of teeth on ceratobranchial 5 bone, located between the dorsal tooth row and ventral tooth row." [TAO:wd] is_a: TAO:0001667 ! tooth row [Term] id: TAO:0001140 name: dorsal tooth row def: "Tooth row that is the dorsalmost row of teeth on ceratobranchial 5 bone." [TAO:wd] is_a: TAO:0001667 ! tooth row [Term] id: TAO:0001141 name: tooth 1V def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the ventral tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001137 ! ventral tooth row [Term] id: TAO:0001142 name: tooth 5V def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the ventral tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001137 ! ventral tooth row [Term] id: TAO:0001143 name: tooth 4V def: "Ceratobranchial 5 tooth which is posterior to tooth 3V and anterior to tooth 5V in the ventral tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001137 ! ventral tooth row [Term] id: TAO:0001144 name: tooth 2V def: "Ceratobranchial 5 tooth which is posterior to tooth 1V and anterior to tooth 3V in the ventral tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001137 ! ventral tooth row [Term] id: TAO:0001145 name: tooth 3V def: "Ceratobranchial 5 tooth which is posterior to tooth 2V and anterior to tooth 4V in the ventral tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001137 ! ventral tooth row [Term] id: TAO:0001146 name: tooth 1MD def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the mediodorsal tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001139 ! mediodorsal tooth row [Term] id: TAO:0001147 name: tooth 2MD def: "Ceratobranchial 5 tooth which is posterior to tooth 1MD and anterior to tooth 3MD in the mediodorsal tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001139 ! mediodorsal tooth row [Term] id: TAO:0001148 name: tooth 1D def: "Ceratobranchial 5 tooth which is the anteriormost tooth in the dorsal tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001140 ! dorsal tooth row [Term] id: TAO:0001149 name: olfactory system is_a: TAO:0000282 ! sensory system [Term] id: TAO:0001150 name: tooth 2D def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the dorsal tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001140 ! dorsal tooth row [Term] id: TAO:0001151 name: tooth 4MD def: "Ceratobranchial 5 tooth which is the posteriormost tooth in the mediodorsal tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001139 ! mediodorsal tooth row [Term] id: TAO:0001152 name: tooth 3MD def: "Ceratobranchial 5 tooth which is posterior to tooth 2MD and anterior to tooth 4MD in the mediodorsal tooth row." [TAO:wd] is_a: TAO:0000694 ! ceratobranchial 5 tooth relationship: OBO_REL:part_of TAO:0001139 ! mediodorsal tooth row [Term] id: TAO:0001153 name: tooth placode def: "Placode that develops into a tooth. The placode is a thickening of the pharyngeal epithelium." [ZFIN:curator] synonym: "dental primordium" EXACT [] synonym: "tooth germ" EXACT [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0001174 ! pharyngeal epithelium [Term] id: TAO:0001154 name: anal fin musculature is_a: TAO:0000207 ! fin musculature relationship: OBO_REL:part_of TAO:0001162 ! anal fin [Term] id: TAO:0001155 name: enteric nervous system is_a: TAO:0001574 ! autonomic nervous system relationship: develops_from TAO:0001334 ! presumptive enteric nervous system [Term] id: TAO:0001156 name: posterior lateral line placode is_a: TAO:0001310 ! dorsolateral placode relationship: OBO_REL:part_of TAO:0001471 ! posterior lateral line system [Term] id: TAO:0001157 name: posterior lateral line primordium def: "A migrating group of cells originating from the posterior lateral line placode. The primordium deposits seven to nine neuromasts and interneuromasts between them during its posterior migration to the tail. Gompel et al, 2001." [ZFIN:curator] synonym: "posterior lateral line primordia" EXACT PLURAL [] is_a: TAO:0000228 ! lateral line primordium relationship: develops_from TAO:0001156 ! posterior lateral line placode relationship: OBO_REL:part_of TAO:0001471 ! posterior lateral line system [Term] id: TAO:0001158 name: endocrine system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0001159 name: immune system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0001160 name: dorsal scute def: "Dermal bone that is a bony plate that forms in dorsal midline of body margin between the skull and dorsal fin." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton relationship: OBO_REL:part_of TAO:0001248 ! dorsal scute series [Term] id: TAO:0001161 name: pectoral fin is_a: TAO:0000108 ! fin relationship: develops_from TAO:0000141 ! pectoral fin bud [Term] id: TAO:0001162 name: anal fin is_a: TAO:0000108 ! fin relationship: develops_from TAO:0001069 ! ventral fin fold relationship: OBO_REL:part_of TAO:0001117 ! post-vent region [Term] id: TAO:0001163 name: supraneural 7 bone is_a: TAO:0000442 ! supraneural bone [Term] id: TAO:0001164 name: supraneural 6 bone synonym: "sn6" EXACT [] is_a: TAO:0000442 ! supraneural bone [Term] id: TAO:0001165 name: supraneural 5 bone synonym: "sn5" EXACT [] is_a: TAO:0000442 ! supraneural bone [Term] id: TAO:0001166 name: supraneural 9 bone is_a: TAO:0000442 ! supraneural bone [Term] id: TAO:0001167 name: vertebra 1 def: "Vertebra that is posteriorly adjacent to the neurocranium." [TAO:wd] is_a: TAO:0001189 ! vertebra [Term] id: TAO:0001168 name: vertebra 2 def: "Vertebra that is posteriorly adjacent to vertebra 1." [TAO:wd] is_a: TAO:0001189 ! vertebra [Term] id: TAO:0001169 name: vertebra 3 def: "Vertebra that is posteriorly adjacent to vertebra 2." [TAO:wd] is_a: TAO:0001189 ! vertebra [Term] id: TAO:0001170 name: vertebra 4 def: "Vertebra that is posteriorly adjacent to vertebra 5." [TAO:wd] is_a: TAO:0001189 ! vertebra relationship: overlaps TAO:0001940 ! vertebra 4-vertebra 5 joint [Term] id: TAO:0001171 name: os suspensorium def: "Endochondral bone and Weberian ossicle that is an element of the fourth vertebra that curves ventrally around the anterior head of the swim bladder." [ZFIN:curator] synonym: "fifth Weberian ossicle" EXACT [] synonym: "Weberian ossicle 5" EXACT [] is_a: TAO:0000461 ! Weberian ossicle is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001170 ! vertebra 4 [Term] id: TAO:0001172 name: roofing cartilage def: "Cartilaginous larval structure dorsal to the four anterior-most vertebrae, which forms the connection between neural arches and supraneurals in the Weberian apparatus. Bird and Mabee, 2003." [ZFIN:curator] is_a: TAO:0001457 ! postcranial axial cartilage relationship: OBO_REL:part_of TAO:0001191 ! supraneural 2 bone relationship: OBO_REL:part_of TAO:0001192 ! supraneural 3 bone [Term] id: TAO:0001173 name: dorsal fin is_a: TAO:0000108 ! fin relationship: develops_from TAO:0000102 ! dorsal fin fold [Term] id: TAO:0001174 name: pharyngeal epithelium def: "Epithelium lining the pharynx consisting largely of simple columnar epithelium with a short segment (1mm) of stratified squamous epithelium on the ventral side. Chen et al, 2007." [ZFIN:curator] is_a: TAO:0001495 ! unilaminar epithelium relationship: develops_from TAO:0001104 ! pharyngeal endoderm relationship: OBO_REL:part_of TAO:0000056 ! pharynx [Term] id: TAO:0001175 name: blastodisc is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0001176 name: blastoderm is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0001175 ! blastodisc [Term] id: TAO:0001177 name: roof plate spinal cord relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0001178 name: non neural ectoderm synonym: "ventral ectoderm" EXACT [] relationship: OBO_REL:part_of TAO:0000016 ! ectoderm [Term] id: TAO:0001179 name: epidermal superficial stratum relationship: develops_from TAO:0001185 ! periderm relationship: OBO_REL:part_of TAO:0000105 ! epidermis [Term] id: TAO:0001180 name: epidermal basal stratum relationship: OBO_REL:part_of TAO:0000105 ! epidermis [Term] id: TAO:0001181 name: epidermal intermediate stratum relationship: OBO_REL:part_of TAO:0000105 ! epidermis [Term] id: TAO:0001182 name: dermal deep region def: "Portion of the dermis characterized by a well-arranged, plywood-like, collagenous network. Le Guellec et al, 2004." [ZFIN:curator] synonym: "stratum compactum" EXACT [] relationship: develops_from TAO:0001186 ! collagenous dermal stroma relationship: OBO_REL:part_of TAO:0001119 ! dermis [Term] id: TAO:0001183 name: dermal superficial region synonym: "stratum laxum" EXACT [] relationship: OBO_REL:part_of TAO:0001119 ! dermis [Term] id: TAO:0001184 name: pelvic fin is_a: TAO:0000108 ! fin relationship: develops_from TAO:0001384 ! pelvic fin bud [Term] id: TAO:0001185 name: periderm def: "The outermost epidermal layer covering the fish at embryonic stages; derived from the EVL and thought to eventually be replaced by the superficial stratum of the epidermis. Sometimes used synonymously with EVL. Le Guellec et al, 2004." [ZFIN:curator] synonym: "EVL" EXACT [] is_a: TAO:0001486 ! epithelium relationship: develops_from TAO:0000086 ! EVL relationship: OBO_REL:part_of TAO:0000016 ! ectoderm [Term] id: TAO:0001186 name: collagenous dermal stroma def: "A layer of collagen fibrils present in the imature integument in an acellular subepidermal space. At first, the fibrils are all oriented in the same direction, later they form the complex plywood-like structure that is characteristic of the dermal deep region. Le Guellec et al, 2004." [ZFIN:curator] synonym: "primary dermal stroma" EXACT [] relationship: OBO_REL:part_of TAO:0001119 ! dermis [Term] id: TAO:0001187 name: presumptive midbrain hindbrain boundary synonym: "MHB" EXACT [] relationship: OBO_REL:part_of TAO:0000146 ! presumptive brain [Term] id: TAO:0001188 name: Weberian apparatus def: "Anatomical cluster that consists of the anteriormost vertebrae and associated structures that connect the swim bladder to the inner ear." [ZFIN:curator] comment: Vertebra 1-4, and sometimes vertebra 5 in some catfishes, are part of the Weberian apparatus. Weberian apparatus is present in Otophysi. is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001559 ! vertebral column [Term] id: TAO:0001189 name: vertebra def: "Endochondral bone that forms around the notochord and is part of the vertebral column." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001559 ! vertebral column [Term] id: TAO:0001190 name: Weberian vertebra def: "Vertebra that is part of the Weberian apparatus." [ZFIN:curator] comment: Weberian vertebra are usually vertebra 1-4. Present in Otophysi. synonym: "Weberian vertebrae" EXACT PLURAL [] is_a: TAO:0001189 ! vertebra relationship: OBO_REL:part_of TAO:0001188 ! Weberian apparatus [Term] id: TAO:0001191 name: supraneural 2 bone def: "Supraneural bone located dorsal to vertebra 2." [ZFIN:curator] comment: In otophysans, supraneural 2 bone is part of the neural complex. synonym: "small supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] synonym: "sn2" EXACT [] is_a: TAO:0000442 ! supraneural bone relationship: develops_from TAO:0001869 ! supraneural 2 cartilage [Term] id: TAO:0001192 name: supraneural 3 bone def: "Supraneural bone that is located dorsal to vertebrae 3 and 4." [ZFIN:curator] comment: In otophysans, supraneural 3 bone is part of the neural complex and fuses in development with neural arches 3 and 4. synonym: "large supraneural" EXACT [TAO:doi\:10.1046/j.1096-3642.2002.00014.x] synonym: "sn3" EXACT [] is_a: TAO:0000442 ! supraneural bone relationship: develops_from TAO:0001870 ! supraneural 3 cartilage [Term] id: TAO:0001193 name: supraneural 8 bone is_a: TAO:0000442 ! supraneural bone [Term] id: TAO:0001194 name: cranial neural crest def: "Neural crest that is part of the head." [ZFIN:curator] is_a: TAO:0000045 ! neural crest [Term] id: TAO:0001195 name: pars anterior synonym: "pars distalis" EXACT [] relationship: OBO_REL:part_of TAO:0001282 ! adenohypophysis [Term] id: TAO:0001196 name: pars tuberalis relationship: OBO_REL:part_of TAO:0001282 ! adenohypophysis [Term] id: TAO:0001197 name: pars intermedia relationship: OBO_REL:part_of TAO:0001282 ! adenohypophysis [Term] id: TAO:0001198 name: adenohypophyseal placode synonym: "pituitary placode" EXACT [] relationship: develops_from TAO:0001178 ! non neural ectoderm [Term] id: TAO:0001199 name: infundibulum def: "A short stalk connecting the pituitary with the brain. Axons of secretory cells in the floor of the diencephalon traverse the infundibulum and terminate in the neurohypophysis." [ZFIN:curator] synonym: "hypophysial stalk" EXACT [] synonym: "infundibulum of hypothalamus" EXACT [] synonym: "pituitary stalk" EXACT [] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0001200 name: corpuscles of Stannius def: "Islands of eosinic cells found on the lateroventral surface of the kidney. Function is thought to be that of the parathyroid gland in other vertebrates, which are lacking in fishes. These cells secrete hypocalcin (teleocalcin) to regulate calcium metabolism." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0001201 name: ventral lateral mesoderm relationship: OBO_REL:part_of TAO:0000083 ! ventral mesoderm [Term] id: TAO:0001202 name: optic cup synonym: "eye cup" EXACT [] relationship: develops_from TAO:0000050 ! optic vesicle relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0001203 name: ciliary body relationship: OBO_REL:part_of TAO:0001202 ! optic cup [Term] id: TAO:0001204 name: axial mesoderm relationship: develops_from TAO:0001378 ! axial hypoblast relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0001205 name: Meckel's cartilage def: "Pharyngeal arch cartilage that is the cartilaginous embryonic component of the lower jaw, or ventral mandibular arch. It develops into the endochondral articular and retroarticular bones. Meckel's cartilage is paired." [ZFIN:curator] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch [Term] id: TAO:0001206 name: intermediate mesoderm synonym: "IM" EXACT [] relationship: OBO_REL:part_of TAO:0000041 ! mesoderm [Term] id: TAO:0001207 name: presumptive rhombomere 1 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001208 name: presumptive rhombomere 2 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001209 name: presumptive rhombomere 7 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001210 name: presumptive rhombomere 6 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001211 name: presumptive rhombomere 5 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001212 name: presumptive rhombomere 4 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001213 name: presumptive rhombomere 3 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001214 name: presumptive rhombomere 8 relationship: OBO_REL:part_of TAO:0007029 ! hindbrain neural keel [Term] id: TAO:0001215 name: thalamus relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0001216 name: splanchnocranium def: "Anatomical cluster that is part of the cranium and consists of the jaws, hyoid and branchial arches." [ZFIN:curator] synonym: "pharyngeal arch skeleton" EXACT [] synonym: "pharyngeal skeleton" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium relationship: OBO_REL:part_of TAO:0001306 ! pharyngeal arch [Term] id: TAO:0001217 name: presumptive hypochord is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0001218 name: presumptive floor plate relationship: OBO_REL:part_of TAO:0000132 ! neural plate [Term] id: TAO:0001220 name: copula def: "Pharyngeal arch cartilage that is ventral, median, and associated with more than one pharyngeal arch in the pharyngeal arch 3-7 skeleton." [ZFIN:curator] synonym: "basibranchial copula" EXACT [] synonym: "copulae" EXACT PLURAL [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001221 name: anterior copula def: "Copula that is ventral, median, and associated with pharyngeal arches 3-5." [ZFIN:curator] synonym: "anterior basibranchial copula " EXACT [] synonym: "copula 1" EXACT [] synonym: "copula 2" EXACT [] is_a: TAO:0001220 ! copula [Term] id: TAO:0001222 name: posterior copula def: "Copula that is ventral, median, and associated with pharyngeal arches 6-7." [ZFIN:curator] synonym: "copula 2" EXACT [] synonym: "copula 3" RELATED [] synonym: "posterior basibranchial copula" EXACT [] synonym: "posterior copula" EXACT [] is_a: TAO:0001220 ! copula [Term] id: TAO:0001223 name: basibranchial 1 bone def: "Basibranchial bone that is ventral, median, and associated with pharyngeal arch 3." [ZFIN:curator] is_a: TAO:0000170 ! basibranchial bone is_a: TAO:0001915 ! basibranchial 1 element relationship: develops_from TAO:0001221 ! anterior copula relationship: develops_from TAO:0001864 ! basibranchial 1 cartilage [Term] id: TAO:0001224 name: basibranchial 2 bone def: "Basibranchial bone that is ventral, median, and associated with pharyngeal arch 4." [ZFIN:curator] is_a: TAO:0000170 ! basibranchial bone is_a: TAO:0001916 ! basibranchial 2 element relationship: develops_from TAO:0001221 ! anterior copula relationship: develops_from TAO:0001874 ! basibranchial 2 cartilage [Term] id: TAO:0001225 name: basibranchial 3 bone def: "Basibranchial bone that is ventral, median, and associated with pharyngeal arch 5." [ZFIN:curator] is_a: TAO:0000170 ! basibranchial bone is_a: TAO:0001917 ! basibranchial 3 element relationship: develops_from TAO:0001221 ! anterior copula relationship: develops_from TAO:0001876 ! basibranchial 3 cartilage [Term] id: TAO:0001226 name: basibranchial 4 bone def: "Basibranchial bone that is ventral, median, and associated with pharyngeal arch 6." [ZFIN:curator] is_a: TAO:0000170 ! basibranchial bone is_a: TAO:0001918 ! basibranchial 4 element relationship: develops_from TAO:0001222 ! posterior copula relationship: develops_from TAO:0001865 ! basibranchial 4 cartilage [Term] id: TAO:0001227 name: mandibular arch def: "Skeletal and cartilagenous elements of the first pharyngeal arch." [ZFIN:curator] synonym: "jaw cartilage" EXACT [] synonym: "jaws" EXACT [] synonym: "oral jaw skeleton" EXACT [] synonym: "pharyngeal arch 1 skeleton" EXACT [] synonym: "visceral arch 1" EXACT [] is_a: TAO:0001216 ! splanchnocranium relationship: OBO_REL:part_of TAO:0001595 ! pharyngeal arch 1 [Term] id: TAO:0001228 name: gill arch 1 skeleton synonym: "branchial arch 1" EXACT [] synonym: "pharyngeal arch 3 skeleton" EXACT [] synonym: "visceral arch 3" EXACT [] is_a: TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0001598 ! gill arch 1 [Term] id: TAO:0001229 name: gill arch 5 skeleton synonym: "branchial arch 5 skeleton" EXACT [] synonym: "pharyngeal arch 7 skeleton" EXACT [] synonym: "visceral arch 7 skeleton" EXACT [] is_a: TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0001602 ! gill arch 5 [Term] id: TAO:0001230 name: gill arch 4 skeleton synonym: "branchial arch 4 skeleton" EXACT [] synonym: "pharyngeal arch 6 skeleton" EXACT [] synonym: "visceral arch 6 skeleton" EXACT [] is_a: TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0001601 ! gill arch 4 [Term] id: TAO:0001231 name: gill arch 2 skeleton synonym: "branchial arch 2 skeleton" EXACT [] synonym: "pharyngeal arch 4 skeleton" EXACT [] synonym: "visceral arch 4 skeleton" EXACT [] is_a: TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0001599 ! gill arch 2 [Term] id: TAO:0001232 name: gill arch 3 skeleton synonym: "branchial arch 3 skeleton" EXACT [] synonym: "pharyngeal arch 5 skeleton" EXACT [] synonym: "visceral arch 5 skeleton" EXACT [] is_a: TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0001600 ! gill arch 3 [Term] id: TAO:0001233 name: hypobranchial 1 bone def: "Hypobranchial bone that is bilaterally paired and articulates posteriorly with ceratobranchial 1 cartilage or bone." [ZFIN:curator] is_a: TAO:0000363 ! hypobranchial bone is_a: TAO:0001894 ! hypobranchial 1 element relationship: develops_from TAO:0001524 ! hypobranchial 1 cartilage relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001234 name: hypobranchial 4 bone def: "Hypobranchial bone that is bilaterally paired and articulates posteriorly with ceratobranchial 4 cartilage or bone." [ZFIN:curator] is_a: TAO:0000363 ! hypobranchial bone is_a: TAO:0001897 ! hypobranchial 4 element relationship: develops_from TAO:0001523 ! hypobranchial 4 cartilage relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001235 name: hypobranchial 3 bone def: "Hypobranchial bone that is bilaterally paired and articulates posteriorly with ceratobranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0000363 ! hypobranchial bone is_a: TAO:0001896 ! hypobranchial 3 element relationship: develops_from TAO:0001526 ! hypobranchial 3 cartilage relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton relationship: overlaps TAO:0001863 ! inter-hypobranchial 3 joint [Term] id: TAO:0001236 name: hypobranchial 2 bone def: "Hypobranchial bone that is bilaterally paired and articulates posteriorly with ceratobranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0000363 ! hypobranchial bone is_a: TAO:0001895 ! hypobranchial 2 element relationship: develops_from TAO:0001525 ! hypobranchial 2 cartilage relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001237 name: ceratobranchial 1 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] is_a: TAO:0000488 ! ceratobranchial bone is_a: TAO:0001899 ! ceratobranchial 1 element relationship: develops_from TAO:0001520 ! ceratobranchial 1 cartilage relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001238 name: iris relationship: OBO_REL:part_of TAO:0001202 ! optic cup [Term] id: TAO:0001239 name: ceratobranchial 5 bone def: "Ceratobranchial bone that is the most posterior, bilaterally paired ventral pharyngeal arch bone." [ZFIN:curator] comment: Synonym 'lower pharyngeal' from Weitzman, 1962.\nSynonym 'inferior pharyngeal bone' from Saxena, S.C. (1960). The cranial musculature of a hill-stream cyprinid fish Garra mullya (Sykes). Proceedings of the National Institute of Science in India. 26B(4): 176-188.\nSynonym 'pharyngeal arch' from Eastman, J.T. (1971). The pharyngeal bone musculature of the carp, Cyprinus carpio. Journal of Morphology. 134(2): 131-140. synonym: "inferior pharyngeal bone" EXACT [] synonym: "lower pharyngeal" EXACT [] synonym: "pharyngeal arch" EXACT [] is_a: TAO:0000488 ! ceratobranchial bone is_a: TAO:0001903 ! ceratobranchial 5 element relationship: develops_from TAO:0001521 ! ceratobranchial 5 cartilage relationship: OBO_REL:part_of TAO:0001229 ! gill arch 5 skeleton [Term] id: TAO:0001240 name: ceratobranchial 4 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] is_a: TAO:0000488 ! ceratobranchial bone is_a: TAO:0001902 ! ceratobranchial 4 element relationship: develops_from TAO:0001519 ! ceratobranchial 4 cartilage relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001241 name: ceratobranchial 3 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0000488 ! ceratobranchial bone is_a: TAO:0001901 ! ceratobranchial 3 element relationship: develops_from TAO:0001518 ! ceratobranchial 3 cartilage relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001242 name: ceratobranchial 2 bone def: "Ceratobranchial bone that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0000488 ! ceratobranchial bone is_a: TAO:0001900 ! ceratobranchial 2 element relationship: develops_from TAO:0001517 ! ceratobranchial 2 cartilage relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001243 name: epibranchial 1 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] is_a: TAO:0000658 ! epibranchial bone is_a: TAO:0001905 ! epibranchial 1 element relationship: develops_from TAO:0001528 ! epibranchial 1 cartilage relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001244 name: epibranchial 5 cartilage def: "Epibranchial cartilage that is bilaterally paired and located at the articulation of epibranchial 4 cartilage or bone and the posterior tip of ceratobranchial 4 cartilage or bone." [ZFIN:curator] synonym: "accessory cartilage" EXACT [] synonym: "interbranchial" EXACT [] synonym: "interbranchial IV" EXACT [] is_a: TAO:0001527 ! epibranchial cartilage relationship: OBO_REL:part_of TAO:0001229 ! gill arch 5 skeleton [Term] id: TAO:0001245 name: epibranchial 4 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] is_a: TAO:0000658 ! epibranchial bone is_a: TAO:0001908 ! epibranchial 4 element relationship: develops_from TAO:0001531 ! epibranchial 4 cartilage relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton relationship: overlaps TAO:0001860 ! epibranchial 4-upper pharyngeal toothplate joint [Term] id: TAO:0001246 name: epibranchial 2 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0000658 ! epibranchial bone is_a: TAO:0001906 ! epibranchial 2 element relationship: develops_from TAO:0001530 ! epibranchial 2 cartilage relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001247 name: epibranchial 3 bone def: "Epibranchial bone that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0000658 ! epibranchial bone is_a: TAO:0001907 ! epibranchial 3 element relationship: develops_from TAO:0001529 ! epibranchial 3 cartilage relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton relationship: overlaps TAO:0001861 ! epibranchial 3-pharyngobranchial 3 joint relationship: overlaps TAO:0001862 ! epibranchial 3-pharyngobranchial 4 joint [Term] id: TAO:0001248 name: dorsal scute series is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001249 name: exocrine pancreas def: "The exocrine pancreas is composed of acinar epithelial cells and ductal epithelium that manufacture the proteolytic enzymes and bicarbonate required for digestion." [ZFIN:curator] relationship: develops_from TAO:0001369 ! anterior pancreatic bud relationship: OBO_REL:part_of TAO:0000140 ! pancreas [Term] id: TAO:0001250 name: pharyngobranchial 2 bone def: "Pharyngobranchial bone that is bilaterally paired and articulates medially with epibranchial 2 bone." [ZFIN:curator] synonym: "infrapharyngobranchial 2" EXACT [] is_a: TAO:0000527 ! pharyngobranchial bone is_a: TAO:0001911 ! pharyngobranchial 2 element relationship: develops_from TAO:0001536 ! pharyngobranchial 2 cartilage relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001251 name: pharyngobranchial 4 cartilage def: "Pharyngobranchial cartilage that is bilaterally paired and articulates medially with epibranchial 4 cartilage or bone." [ZFIN:curator] synonym: "infrapharyngobranchial 4 cartilage" EXACT [] synonym: "infrapharyngobranchials" EXACT PLURAL [] is_a: TAO:0001533 ! pharyngobranchial cartilage is_a: TAO:0001913 ! pharyngobranchial 4 element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton relationship: overlaps TAO:0001862 ! epibranchial 3-pharyngobranchial 4 joint [Term] id: TAO:0001252 name: pharyngobranchial 3 bone def: "Pharyngobranchial bone that is bilaterally paired and articulates medially with epibranchial 3 bone." [TAO:wd] synonym: "infrapharyngobranchial 3" EXACT [] is_a: TAO:0000527 ! pharyngobranchial bone is_a: TAO:0001912 ! pharyngobranchial 3 element relationship: develops_from TAO:0001534 ! pharyngobranchial 3 cartilage relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton relationship: overlaps TAO:0001861 ! epibranchial 3-pharyngobranchial 3 joint [Term] id: TAO:0001253 name: neural arch 2 def: "Neural arch that is the second after the neurocranium." [TAO:wd] is_a: TAO:0001066 ! neural arch [Term] id: TAO:0001254 name: abdominal scute series is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001256 name: lateral floor plate relationship: OBO_REL:part_of TAO:0000022 ! floor plate [Term] id: TAO:0001257 name: medial floor plate def: "The medial portion of the spinal cord floor plate, located adjacent to the notochord." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000022 ! floor plate [Term] id: TAO:0001258 name: floor plate hindbrain is_a: TAO:0000022 ! floor plate relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0001259 name: forebrain ventricle synonym: "forebrain vesicle" EXACT [] synonym: "prosencephalic ventricle" EXACT [] relationship: OBO_REL:part_of TAO:0000109 ! forebrain relationship: OBO_REL:part_of TAO:0001261 ! ventricular system [Term] id: TAO:0001260 name: endocrine pancreas def: "The zebrafish endocrine pancreas is composed of small groups of islet cells that are distributed throughout the exocrine pancreas. The islet cells produce insulin, glucagon and somatostatin." [ZFIN:curator] synonym: "pancreatic islet" EXACT [] relationship: develops_from TAO:0001370 ! posterior pancreatic bud relationship: OBO_REL:part_of TAO:0000140 ! pancreas [Term] id: TAO:0001261 name: ventricular system relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0001262 name: gonad primordium def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary." [ZFIN:curator] synonym: "gonadal primordium" EXACT [] synonym: "undifferentiated gonad" EXACT [] relationship: OBO_REL:part_of TAO:0000632 ! reproductive system [Term] id: TAO:0001263 name: ovarian follicle stage I def: "Stage I follicles (less than 140 microns) are primary growth stage. Selman et al, 1993." [ZFIN:curator] synonym: "previtillogenic ovarian follicle" EXACT [] is_a: TAO:0001110 ! ovarian follicle [Term] id: TAO:0001264 name: ovarian follicle stage IV def: "Stage IV (690-730 microns) are oocyte maturation. Selman et al, 1993." [ZFIN:curator] synonym: "mature ovarian follicle" EXACT [] is_a: TAO:0001110 ! ovarian follicle [Term] id: TAO:0001265 name: ovarian follicle stage II def: "Stage II follicles (140-340 microns) are cortical alveolus stage. Selman et al, 1993." [ZFIN:curator] is_a: TAO:0001110 ! ovarian follicle [Term] id: TAO:0001266 name: ovarian follicle stage III def: "Stage III (340-690 microns) are vitellogenesis. Selman et al, 1993." [ZFIN:curator] is_a: TAO:0001110 ! ovarian follicle [Term] id: TAO:0001267 name: cranial vasculature synonym: "head vasculature" EXACT [] is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0001268 name: sperm duct synonym: "sperm ducts" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000598 ! testis [Term] id: TAO:0001269 name: regenerating fin is_a: TAO:0000108 ! fin [Term] id: TAO:0001270 name: blastema is_a: TAO:0005147 ! regenerating tissue relationship: OBO_REL:part_of TAO:0001269 ! regenerating fin [Term] id: TAO:0001271 name: neurohypophysis synonym: "posterior pituitary" EXACT [] relationship: OBO_REL:part_of TAO:0000118 ! hypophysis [Term] id: TAO:0001272 name: palatoquadrate arch def: "The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [ZFIN:curator] synonym: "dorsal mandibular arch" EXACT [] synonym: "dorsal visceral arch 2" EXACT [] synonym: "upper jaw" EXACT [] synonym: "upper pharyngeal jaws" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000444 ! suspensorium relationship: OBO_REL:part_of TAO:0000590 ! oral region relationship: OBO_REL:part_of TAO:0001227 ! mandibular arch [Term] id: TAO:0001273 name: ventral mandibular arch def: "The ventral portion of the first pharyngeal arch, comprising the lower jaw." [ZFIN:curator] synonym: "lower jaw" EXACT [] synonym: "mandible" EXACT [] synonym: "mandibular series" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000590 ! oral region relationship: OBO_REL:part_of TAO:0001227 ! mandibular arch [Term] id: TAO:0001274 name: coronomeckelian def: "Tendon bone located on the median side of the lower jaw, dorsal to Meckel's cartilage and medial to the angular. The coronomeckelian forms as an ossification of the tendon of the adductor mandibulae muscle. The coronomeckelian is a paired bone." [ZFIN:curator] synonym: "sesamoid articular" EXACT [] synonym: "sesamoid coronoid" EXACT [] is_a: TAO:0001637 ! replacement bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch [Term] id: TAO:0001275 name: sublingual def: "Endochondral bone that is the median element of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:je] is_a: TAO:0001591 ! endochondral bone [Term] id: TAO:0001276 name: hyoid arch synonym: "hyoid bars" EXACT [] synonym: "pharyngeal arch 2 skeleton" EXACT [] synonym: "ventral visceral arch 2" EXACT [] synonym: "visceral arch 2" EXACT [] is_a: TAO:0001216 ! splanchnocranium relationship: OBO_REL:part_of TAO:0001596 ! pharyngeal arch 2 [Term] id: TAO:0001277 name: anterior chamber swim bladder def: "The anterior compartment of the swim bladder is thought to have acoustic resonance properties that play a key role in audition. It is connected to the posterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000076 ! swim bladder [Term] id: TAO:0001278 name: posterior chamber swim bladder def: "The posterior compartment of the swim bladder plays a key role in buoyancy control. It is connected to the anterior chamber via the dusctus communicans. Finney et al, 2006." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000076 ! swim bladder [Term] id: TAO:0001279 name: branchiostegal ray 1 def: "Branchiostegal ray that is the anterior-most ray in the adult." [ZFIN:curator] is_a: TAO:0000476 ! branchiostegal ray [Term] id: TAO:0001280 name: branchiostegal ray 3 def: "Branchiostegal ray that is the third anterior-most ray in the adult." [ZFIN:curator] is_a: TAO:0000476 ! branchiostegal ray [Term] id: TAO:0001281 name: branchiostegal ray 2 def: "Branchiostegal ray that is the second anterior-most ray in the adult." [ZFIN:curator] is_a: TAO:0000476 ! branchiostegal ray [Term] id: TAO:0001282 name: adenohypophysis def: "The anterior lobe of the hypophysis (pituitary gland). This lobe contains cells that produce prolactin, growth hormone, thyroid-stimulating hormone, follicle-stimulating hormone and proopiomelanocortin. In contrast to mamalian vertebrates, the adenohypophysis remains in a subepithelial position and there exists no equivalent of Rathke's pouch in zebrafish. Herzog et al, 2004." [ZFIN:curator] synonym: "anterior pituitary" EXACT [] relationship: develops_from TAO:0001198 ! adenohypophyseal placode relationship: OBO_REL:part_of TAO:0000118 ! hypophysis [Term] id: TAO:0001283 name: pupil relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0001284 name: optic fissure relationship: OBO_REL:part_of TAO:0001202 ! optic cup [Term] id: TAO:0001285 name: intersegmental vessel synonym: "intersegmental vessels" EXACT PLURAL [] synonym: "intersomitic vessels" EXACT [] synonym: "Se" EXACT [] relationship: develops_from TAO:0000014 ! dorsal aorta relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature relationship: OBO_REL:part_of TAO:0005037 ! tail vasculature [Term] id: TAO:0001286 name: caudal vein plexus is_a: TAO:0005037 ! tail vasculature [Term] id: TAO:0001287 name: renal tubule synonym: "renal tubules" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0001288 name: renal glomeruli relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0001289 name: ciliary marginal zone def: "Region at the periphery of the retina where retinal stem cells are located. After 60 hpf, the CMZ is the source of most retinal growth. Wehman et al, 2005." [ZFIN:curator] synonym: "circumferential germinal zone" EXACT [] synonym: "CMZ" EXACT [] relationship: OBO_REL:part_of TAO:0000152 ! retina [Term] id: TAO:0001290 name: stomodeum def: "Anterior part of the embryonic alimentary canal formed as an invagination of the ectoderm; the future mouth." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0001291 name: facial ganglion synonym: "geniculate ganglion" EXACT [] synonym: "gVII" EXACT [] is_a: TAO:0001555 ! epibranchial ganglion relationship: develops_from TAO:0001295 ! facial placode [Term] id: TAO:0001292 name: epiphyseal stalk def: "The stalk emanates from the diencephalic roof at a left-of-medial position." [ZFIN:curator] synonym: "pineal stalk" EXACT [] relationship: OBO_REL:part_of TAO:0001359 ! pineal complex [Term] id: TAO:0001293 name: posterior kidney is_a: TAO:0000496 ! compound organ relationship: develops_from TAO:0000151 ! pronephros relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0001294 name: epibranchial placode synonym: "epibranchial placodes" EXACT PLURAL [] is_a: TAO:0001309 ! neurogenic placode relationship: OBO_REL:part_of TAO:0000142 ! peripheral nervous system [Term] id: TAO:0001295 name: facial placode synonym: "geniculate placode" EXACT [] is_a: TAO:0001294 ! epibranchial placode [Term] id: TAO:0001296 name: glossopharyngeal placode synonym: "petrosal placode" EXACT [] is_a: TAO:0001294 ! epibranchial placode [Term] id: TAO:0001297 name: vagal placode 1 is_a: TAO:0001294 ! epibranchial placode [Term] id: TAO:0001298 name: vagal placode 2 is_a: TAO:0001294 ! epibranchial placode [Term] id: TAO:0001299 name: vagal placode 3 is_a: TAO:0001294 ! epibranchial placode [Term] id: TAO:0001300 name: vagal placode 4 is_a: TAO:0001294 ! epibranchial placode [Term] id: TAO:0001301 name: glossopharyngeal ganglion synonym: "gIX" EXACT [] synonym: "petrosal ganglion" EXACT [] is_a: TAO:0001555 ! epibranchial ganglion relationship: develops_from TAO:0001296 ! glossopharyngeal placode [Term] id: TAO:0001302 name: vagal ganglion 1 synonym: "gX1" EXACT [] synonym: "nodose ganglion 1" EXACT [] is_a: TAO:0001555 ! epibranchial ganglion relationship: develops_from TAO:0001297 ! vagal placode 1 [Term] id: TAO:0001303 name: vagal ganglion 2 synonym: "gX2" EXACT [] synonym: "nodose ganglion 2" EXACT [] is_a: TAO:0001555 ! epibranchial ganglion relationship: develops_from TAO:0001298 ! vagal placode 2 [Term] id: TAO:0001304 name: vagal ganglion 3 synonym: "gX3" EXACT [] synonym: "nodose ganglion 3" EXACT [] is_a: TAO:0001555 ! epibranchial ganglion relationship: develops_from TAO:0001299 ! vagal placode 3 [Term] id: TAO:0001305 name: vagal ganglion 4 synonym: "gX4" EXACT [] synonym: "nodose ganglion 4" EXACT [] is_a: TAO:0001555 ! epibranchial ganglion relationship: develops_from TAO:0001300 ! vagal placode 4 [Term] id: TAO:0001306 name: pharyngeal arch synonym: "pharyngeal arches" EXACT PLURAL [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0001307 name: pharyngeal musculature is_a: TAO:0000328 ! cephalic musculature is_a: TAO:0001953 ! cranial muscle relationship: OBO_REL:part_of TAO:0001306 ! pharyngeal arch [Term] id: TAO:0001308 name: organism subdivision def: "Anatomical structure which is a primary subdivision of whole organism. The mereological sum of these is the whole organism." [ZFIN:curator] synonym: "body part" EXACT [] xref: CARO:0000032 is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0001094 ! body [Term] id: TAO:0001309 name: neurogenic placode is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0007013 ! preplacodal ectoderm relationship: OBO_REL:part_of TAO:0000016 ! ectoderm [Term] id: TAO:0001310 name: dorsolateral placode synonym: "dorsolateral placodes" EXACT PLURAL [] is_a: TAO:0001309 ! neurogenic placode [Term] id: TAO:0001311 name: roof plate rhombomere relationship: OBO_REL:part_of TAO:0001064 ! rhombomere [Term] id: TAO:0001312 name: dorsal anterior lateral line ganglion synonym: "anterodorsal lateral line ganglion" EXACT [] is_a: TAO:0001391 ! anterior lateral line ganglia relationship: develops_from TAO:0001316 ! anterior lateral line placode [Term] id: TAO:0001313 name: ventral anterior lateral line ganglion synonym: "anteroventral lateral line ganglion" EXACT [] is_a: TAO:0001391 ! anterior lateral line ganglia relationship: develops_from TAO:0001316 ! anterior lateral line placode [Term] id: TAO:0001314 name: posterior lateral line ganglion def: "The posterior lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the posterior lateral line system." [ZFIN:curator] is_a: TAO:0000120 ! lateral line ganglion relationship: develops_from TAO:0001156 ! posterior lateral line placode [Term] id: TAO:0001315 name: atrioventricular canal synonym: "AV canal" EXACT [] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0001316 name: anterior lateral line placode is_a: TAO:0001310 ! dorsolateral placode relationship: OBO_REL:part_of TAO:0001468 ! anterior lateral line system [Term] id: TAO:0001317 name: endocardial cushion def: "Swellings of tissue present between the endocardial and myocardial cell layers that will give rise to the interstitial cells of the cardiac valves." [ZFIN:curator] synonym: "endocardial cushions" EXACT PLURAL [] relationship: develops_from TAO:0005072 ! endocardial ring relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0001318 name: cardiac jelly def: "The extracellular matrix between the myocardium and the endocardium. The cardiac jelly plays a central role in the septation of the heart and comprises most of the thickness of the heart wall at early stages, but disappears as the heart differentiates." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000149 ! primitive heart tube [Term] id: TAO:0001319 name: myocardium synonym: "cardiac muscle" EXACT [] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0001320 name: endocardium def: "Layer that lines the lumen of the heart." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0001321 name: neurocranial trabecula synonym: "neurocranial trabeculae" EXACT PLURAL [] synonym: "trabecula" EXACT [] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001322 name: dorsoventral diencephalic tract def: "A tract originating in the epiphysis and fasiculating with the tract of the postoptic commissure. Ross et al, 1992." [ZFIN:curator] synonym: "DVDT" EXACT [] is_a: TAO:0000338 ! diencephalic tracts and commissures [Term] id: TAO:0001323 name: mid intestine def: "The terminal region of the mid intestine is comprised of specialized enterocytes that appear to play a role in mucosal immunity. Wallace et al, 2005." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0001338 ! intestine [Term] id: TAO:0001324 name: enteric musculature is_a: TAO:0000548 ! musculature system relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0001325 name: neural prezygapophysis def: "Paired, anteromedially directed processes from the neural arches, ligamentously joined to the postzygapophyses of the preceding vertebra." [ZFIN:curator] synonym: "neural prezygapophyses" EXACT PLURAL [] synonym: "neural prezygopophyses" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001066 ! neural arch [Term] id: TAO:0001326 name: lens epithelium relationship: OBO_REL:part_of TAO:0000035 ! lens [Term] id: TAO:0001327 name: abdominal musculature is_a: TAO:0000473 ! trunk musculature [Term] id: TAO:0001328 name: neuromere def: "A metameric segment of the central nervous system." [ZFIN:curator] synonym: "neural segment" EXACT [] synonym: "neuromeres" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0001329 name: retinal inner plexiform layer def: "The layer within the retina where the bipolar cells synapse with the dendrites of the ganglion cells." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0001330 name: retinal outer plexiform layer def: "The layer within the retina where the bipolar cells synapse with the photoreceptor cells." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0001331 name: outer limiting membrane relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0001332 name: spinal neuromere synonym: "spinal cord segment" EXACT [] synonym: "spinal neuromeres" EXACT PLURAL [] is_a: TAO:0001328 ! neuromere relationship: OBO_REL:part_of TAO:0000075 ! spinal cord [Term] id: TAO:0001333 name: sublingual dorsal and ventral fused def: "Sublingual that is the single element resulting from the fusion of the sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] is_a: TAO:0001275 ! sublingual relationship: develops_from TAO:0001475 ! sublingual dorsal ossification relationship: develops_from TAO:0001476 ! sublingual ventral ossification [Term] id: TAO:0001334 name: presumptive enteric nervous system is_a: TAO:0001116 ! presumptive structure relationship: develops_from TAO:0000818 ! vagal neural crest [Term] id: TAO:0001335 name: supradorsal def: "Supradorsals are small paired nodules of cartilage positioned at the distal ends of neural arches and the proximal end of neural spines (Arratia et al., 2001)." [ZFIN:curator] is_a: TAO:0001457 ! postcranial axial cartilage relationship: OBO_REL:part_of TAO:0001066 ! neural arch [Term] id: TAO:0001336 name: neural spine def: "Neural spines are extensions of neural arches dorsal to the neural canal in the median skeletogenous septum. Neural spines are typically unpaired median structures but can be paired in some instances, e.g., in the abdominal region of basal teleosts such as Leptolepis, Elops, Megalops, and Hiodon)." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001066 ! neural arch [Term] id: TAO:0001337 name: spermatogonia relationship: OBO_REL:part_of TAO:0000598 ! testis [Term] id: TAO:0001338 name: intestine is_a: TAO:0001490 ! cavitated compound organ relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0001339 name: nucleus of the tract of the anterior commissure def: "Telencephalic nucleus containing the cell bodies of neurons whose axons form the anterior commissure." [ZFIN:curator] synonym: "ntAC" EXACT [] relationship: OBO_REL:part_of TAO:0001108 ! anterior commissure [Term] id: TAO:0001340 name: nucleus of the tract of the postoptic commissure def: "The nucleus containing the cell bodies of neurons whose axons form the postoptic commissure." [ZFIN:curator] synonym: "ntPOC" EXACT [] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0001341 name: intervening zone def: "A zone of delayed differentiation at the midbrainhindbrain boundary. The IZ separates midbrain from anterior hindbrain neuronal clusters and has been described in all vertebrates. Geling et al, 2003." [ZFIN:curator] synonym: "IZ" EXACT [] relationship: develops_from TAO:0001342 ! presumptive intervening zone relationship: OBO_REL:part_of TAO:0000042 ! midbrain hindbrain boundary [Term] id: TAO:0001342 name: presumptive intervening zone relationship: OBO_REL:part_of TAO:0007023 ! posterior neural keel [Term] id: TAO:0001343 name: telencephalon diencephalon boundary relationship: OBO_REL:part_of TAO:0000109 ! forebrain [Term] id: TAO:0001344 name: zona limitans intrathalamica def: "The border between the dorsal and ventral thalamus." [ZFIN:curator] synonym: "zli" EXACT [] relationship: OBO_REL:part_of TAO:0001215 ! thalamus [Term] id: TAO:0001345 name: interrenal gland def: "An epithelial structure consisting of steroid producing cells interposed with chromaffin cells embedded within the head kidney. The interrenal gland is thought to be the equivalent of the mammalian adrenal cortex in zebrafish. Hsu et al. 2003." [ZFIN:curator] relationship: develops_from TAO:0001346 ! interrenal primordium relationship: OBO_REL:part_of TAO:0000669 ! head kidney [Term] id: TAO:0001346 name: interrenal primordium relationship: develops_from TAO:0001206 ! intermediate mesoderm relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0001347 name: stratum fibrosum et griseum superficiale relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0001348 name: stratum marginale relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0001349 name: stratum opticum relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0001350 name: stratum griseum centrale relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0001351 name: stratum album centrale relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0001352 name: stratum periventriculare relationship: OBO_REL:part_of TAO:0000445 ! optic tectum [Term] id: TAO:0001353 name: mesencephalic tectum relationship: develops_from TAO:0001357 ! alar plate midbrain [Term] id: TAO:0001354 name: mesencephalic tegmentum relationship: develops_from TAO:0000761 ! basal plate midbrain [Term] id: TAO:0001355 name: primitive meninx synonym: "meninges" EXACT [] synonym: "meninx primitiva" EXACT [] relationship: develops_from TAO:0000045 ! neural crest relationship: OBO_REL:part_of TAO:0000396 ! nervous system [Term] id: TAO:0001356 name: terminal nerve def: "The terminal nerve, located anterior to cranial nerve I, is comprised of a group of cells with somata adjacent to the olfactory bulb and processes that extend anteriorly to the olfactory epithelium and posteriorly to the telencephalon. In teleost fish an additional group of axons extends along the optic tract and delivers putative neuromodulators to the retina. It is thought to develop from cranial neural crest. Whitlock 2004. Also see Grens, Greenwood and Fernald, Brain Behav Evol 2005; 66(1):1-9." [ZFIN:curator] synonym: "nervus terminalis" EXACT [] is_a: TAO:0000641 ! cranial nerve [Term] id: TAO:0001357 name: alar plate midbrain relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0001358 name: roof plate diencephalon relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0001359 name: pineal complex relationship: OBO_REL:part_of TAO:0000509 ! epithalamus [Term] id: TAO:0001360 name: parapineal organ def: "An unpaired left-sided accessory organ which plays a role in establishing lateral brain left right asymmetry. Gamse et al, 2003." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0001359 ! pineal complex [Term] id: TAO:0001361 name: basiventral def: "Basiventrals are bilaterally paired cartilages lateral to the notochord which are replaced by ossified parapophyses or hemal arches." [ZFIN:curator] synonym: "arcualia" EXACT [] is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0001362 name: parapophysis def: "Endochondral bone that forms from a lateral outgrowth of the basiventral arcualia and connects the rib with the vertebral centrum." [ZFIN:curator] synonym: "lateral process of basiventral" EXACT [] synonym: "transverse apophysis" EXACT [] synonym: "transverse process" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001361 ! basiventral relationship: OBO_REL:part_of TAO:0001582 ! non-Weberian precaudal vertebra [Term] id: TAO:0001363 name: neural complex alt_id: TAO:0001398 def: "Anatomical cluster that consists of supraneural 2 bone and supraneural 3 bone and their extensions, and which is part of the Weberian apparatus." [ZFIN:curator] synonym: "Weberian supraneural" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001188 ! Weberian apparatus [Term] id: TAO:0001364 name: hemal spine def: "Hemal spines are extensions of hemal arches in the ventral skeletogenous septum of the caudal region." [ZFIN:curator] synonym: "haemal spine" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000519 ! hemal arch relationship: OBO_REL:part_of TAO:0002098 ! hemal spine series [Term] id: TAO:0001365 name: trigeminal motor nuclei synonym: "motor nucleus V" EXACT [] synonym: "nV" EXACT [] relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0001366 name: tract of the postoptic commissure synonym: "TPOC" EXACT [] relationship: OBO_REL:part_of TAO:0000059 ! postoptic commissure [Term] id: TAO:0001367 name: forebrain midbrain boundary def: "The boundary between the diencephalon and the mesencephalon." [ZFIN:curator] relationship: develops_from TAO:0007040 ! forebrain midbrain boundary neural tube relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0001368 name: presumptive forebrain midbrain boundary relationship: OBO_REL:part_of TAO:0000146 ! presumptive brain relationship: OBO_REL:part_of TAO:0007014 ! anterior presumptive neural plate [Term] id: TAO:0001369 name: anterior pancreatic bud synonym: "ventral pancreatic anlage" EXACT [] is_a: TAO:0001390 ! pancreatic bud [Term] id: TAO:0001370 name: posterior pancreatic bud synonym: "dorsal pancreatic anlage" EXACT [] is_a: TAO:0001390 ! pancreatic bud [Term] id: TAO:0001371 name: pancreatic system relationship: OBO_REL:part_of TAO:0000339 ! digestive system relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0001372 name: pancreatic duct relationship: develops_from TAO:0001369 ! anterior pancreatic bud relationship: OBO_REL:part_of TAO:0001371 ! pancreatic system [Term] id: TAO:0001373 name: migratory slow muscle precursor cell def: "Cells that initially are located adjacent to the spinal cord and notochord along that migrate from their initial medial position radially through the myotome to the lateral surface of the somites." [ZFIN:curator] synonym: "migratory slow muscle precursor cells" EXACT PLURAL [] relationship: develops_from TAO:0000003 ! adaxial cell relationship: OBO_REL:part_of TAO:0000155 ! somite [Term] id: TAO:0001374 name: atrial myocardium relationship: OBO_REL:part_of TAO:0000471 ! atrium relationship: OBO_REL:part_of TAO:0001319 ! myocardium [Term] id: TAO:0001375 name: ventriculo bulbo valve is_a: TAO:0005065 ! heart valve relationship: develops_from TAO:0001317 ! endocardial cushion relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0000173 ! bulbus arteriosus [Term] id: TAO:0001376 name: presumptive ectoderm is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0001377 name: presumptive mesoderm is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0001378 name: axial hypoblast relationship: develops_from TAO:0000071 ! shield relationship: OBO_REL:part_of TAO:0000117 ! hypoblast [Term] id: TAO:0001379 name: pharyngeal ectoderm relationship: OBO_REL:part_of TAO:0000056 ! pharynx [Term] id: TAO:0001381 name: hypohyal bone def: "Replacement bone that is bilaterally paired and articulates with the anterior ceratohyal posteriorly." [ZFIN:curator] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001400 ! ceratohyal cartilage relationship: develops_from TAO:0001868 ! hypohyal cartilage relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch [Term] id: TAO:0001382 name: epibranchial bone uncinate process def: "Epibranchials 1-3 in adults are compound elements formed by the fusion of epibranchial cartilages and the so-called uncinate processes. Posteromedially directed uncinate processes develop on the posterior edge of epibranchials 1-3. These appear as separate centers of chondrification (6.2 mm) that later fuse laterally to the posterior edges of the epibranchial cartilages (6.8 mm)." [ZFIN:curator] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000658 ! epibranchial bone [Term] id: TAO:0001383 name: fin bud synonym: "fin buds" EXACT PLURAL [] is_a: TAO:0000292 ! surface structure is_a: TAO:0001105 ! embryonic structure [Term] id: TAO:0001384 name: pelvic fin bud is_a: TAO:0001383 ! fin bud relationship: develops_from TAO:0001454 ! pelvic fin field [Term] id: TAO:0001385 name: apical ectodermal ridge pelvic fin bud is_a: TAO:0002146 ! apical ectodermal ridge relationship: OBO_REL:part_of TAO:0001384 ! pelvic fin bud [Term] id: TAO:0001386 name: mesoderm pelvic fin bud relationship: OBO_REL:part_of TAO:0001384 ! pelvic fin bud [Term] id: TAO:0001387 name: pelvic fin skeleton is_a: TAO:0000027 ! paired fin skeleton relationship: OBO_REL:part_of TAO:0001184 ! pelvic fin [Term] id: TAO:0001388 name: epithelial mesenchymal boundary relationship: OBO_REL:part_of TAO:0001269 ! regenerating fin [Term] id: TAO:0001389 name: regeneration epithelium synonym: "epidermal cap" EXACT [] synonym: "wound epidermis" EXACT [] synonym: "wound epithelium" EXACT [] is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0001269 ! regenerating fin [Term] id: TAO:0001390 name: pancreatic bud synonym: "pancreatic buds" EXACT PLURAL [] is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0000254 ! pancreas primordium relationship: OBO_REL:part_of TAO:0001371 ! pancreatic system [Term] id: TAO:0001391 name: anterior lateral line ganglia def: "The anteror lateral line ganglia develops from cranial ectodermal placodes and contain sensory neurons that innervate the anterior lateral line system." [ZFIN:curator] is_a: TAO:0000120 ! lateral line ganglion [Term] id: TAO:0001392 name: parapophysis 1 def: "Parapophysis that is the lateral projections from the first centrum in cyprinids, absent in catostomids, and absent in characiphysans (Fink and Fink, 1996)." [ZFIN:curator] synonym: "basipophysis 1" EXACT [] synonym: "lateral process 1" EXACT [] is_a: TAO:0001362 ! parapophysis relationship: OBO_REL:part_of TAO:0001167 ! vertebra 1 [Term] id: TAO:0001393 name: parapophysis 2 def: "Parapophysis that is lateral projection from the second centrum, absent in Siluriformes (Fink and Fink, 1996)." [ZFIN:curator] synonym: "basipophysis" EXACT [] synonym: "lateral process 2" EXACT [] is_a: TAO:0001362 ! parapophysis relationship: OBO_REL:part_of TAO:0001168 ! vertebra 2 [Term] id: TAO:0001394 name: neural arch 3 def: "Neural arch 3 is expanded and fused to supraneural 3 as part of a neural complex roofing and protecting the neural canal." [ZFIN:curator] is_a: TAO:0001066 ! neural arch relationship: OBO_REL:part_of TAO:0001169 ! vertebra 3 [Term] id: TAO:0001395 name: neural arch 4 def: "Neural arch 4 is expanded and fused to supraneural 3 as part of the neural complex. A reduced neural spine projects from the posterior margin of the neural complex." [ZFIN:curator] is_a: TAO:0001066 ! neural arch relationship: OBO_REL:part_of TAO:0001170 ! vertebra 4 [Term] id: TAO:0001396 name: parapophysis + rib of vertebra 4 def: "The parapophysis + rib, fused to the centrum, extends laterally then angles anteroventrally. A thin plate, the os suspensorium fuses to its median surface." [ZFIN:curator] synonym: "fourth pleural rib plus parapophysis" EXACT [] synonym: "fourth rib plus parapophysis" EXACT [] synonym: "parapophysis/rib" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001170 ! vertebra 4 [Term] id: TAO:0001397 name: post-Weberian supraneural def: "Posterior to the Weberian apparatus, otophysan supraneurals form as median, unpaired, rod- or platelike elements, as in other actinopterygians." [ZFIN:curator] is_a: TAO:0000442 ! supraneural bone [Term] id: TAO:0001399 name: palatoquadrate cartilage synonym: "pterygoquadrate" EXACT [] synonym: "quadrate cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch [Term] id: TAO:0001400 name: ceratohyal cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and the largest cartilaginous component of the ventral hyoid arch." [ZFIN:curator] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: overlaps TAO:0001841 ! interhyal-epihyal joint relationship: overlaps TAO:0001846 ! inter-ventral hypohyal joint relationship: overlaps TAO:0001847 ! dorsal hypohyal-urohyal joint relationship: overlaps TAO:0001848 ! ventral hypohyal-urohyal joint relationship: overlaps TAO:0001849 ! epihyal-branchiostegal ray joint relationship: overlaps TAO:0001850 ! ceratohyal-branchiostegal ray joint [Term] id: TAO:0001401 name: dorsal hyoid arch synonym: "dorsal visceral arch 2" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000444 ! suspensorium relationship: OBO_REL:part_of TAO:0001276 ! hyoid arch [Term] id: TAO:0001402 name: ventral hyoid arch synonym: "ventral visceral arch 2" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001276 ! hyoid arch [Term] id: TAO:0001403 name: supraethmoid def: "Dermal bone that first appears as paired ossifications in the membrane (dermis) dorsolateral to the ethmoid cartilage and anterolateral to the lateral ethmoids, later having the appearance of one butterfly-shaped element. Fused to the anterodorsal margin of the mesethmoid. Bordered anteriorly by the kinethmoid and posteriorly by the frontal." [TAO:GA_TG] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium [Term] id: TAO:0001404 name: preethmoid bone def: "Small rounded to egg-shaped cartilage bone that sits in an anterolateral depression on the prevomer. Articulates with the autopalatine in all cypriniforms." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001405 ! ethmoid cartilage relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium [Term] id: TAO:0001405 name: ethmoid cartilage def: "Chondrocranium cartilage that is initially plate-like and formed from the anterior fusion of the trabecula crani. The ethmoid cartilage is paired." [ZFIN:curator] synonym: "ethmoid plate" EXACT [] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001406 name: kinethmoid bone def: "Sesamoid bone located in the premaxillary-ethmoid ligament, between the mesethmoid and the premaxilla. The kinethmoid is an unpaired median bone." [TAO:GA_TG, ZFIN:curator] comment: The kinethmoid is part of the protrusion mechanism of the upper jaw and is restricted to cypriniform fishes. is_a: TAO:0001590 ! dermal bone is_a: TAO:0001637 ! replacement bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium [Term] id: TAO:0001407 name: infraorbital 2 def: "Infraorbital that is the second bone of the infraorbital series." [ZFIN:curator] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001408 name: infraorbital 3 def: "Infraorbital that is the third bone of the infraorbital series." [ZFIN:curator] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001409 name: infraorbital 4 def: "Infraorbital that is the fourth bone of the infraorbital series." [ZFIN:curator] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001410 name: orbital region def: "Anatomical cluster that is a anterolateral part of the cranium and structurally supports the eye." [TAO:MAH] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0001411 name: sclerotic bone def: "A pair of small dish-shaped bones that cap the anterior and posterior margin of the eyeball." [ZFIN:curator] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001509 ! sclerotic cartilage relationship: OBO_REL:part_of TAO:0001410 ! orbital region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium [Term] id: TAO:0001412 name: epiotic alt_id: TAO:0000659 def: "Endochondral bone that borders that medial edge of the posttemporal fossa. The epiotics are sutured to parietals and supraoccipital dorsally, the exoccipitals ventrally and the pterotics laterally. The epiotic is a paired bone." [ZFIN:curator] synonym: "epioccipital" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001500 ! auditory capsule relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001414 name: occipital region def: "Anatomical cluster that is located in the posterior region of the cranium and forms the margin of the foramen magnum and occiptal condyle." [TAO:MAH] synonym: "basicranial region" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0001415 name: pelvic radial 2 is_a: TAO:0000508 ! pelvic radial relationship: develops_from TAO:0001541 ! pelvic radial 2 cartilage [Term] id: TAO:0001416 name: pelvic radial 3 is_a: TAO:0000508 ! pelvic radial relationship: develops_from TAO:0001540 ! pelvic radial 3 cartilage [Term] id: TAO:0001417 name: pelvic radial 1 is_a: TAO:0000508 ! pelvic radial relationship: develops_from TAO:0001542 ! pelvic radial 1 cartilage [Term] id: TAO:0001418 name: dorsal fin lepidotrichium def: "Lepidotrichium which is part of the dorsal fin." [ZFIN:curator] synonym: "dorsal fin lepidotrichia" EXACT PLURAL [] synonym: "dorsal fin ray" EXACT [] is_a: TAO:0001554 ! lepidotrichium relationship: OBO_REL:part_of TAO:0001124 ! dorsal fin skeleton [Term] id: TAO:0001419 name: dorsal fin pterygiophore def: "A range of seven to nine rod-like internal median skeletal support structures of the dorsal fin, comprised of both bone and cartilage and found between vertebrae 11 and 18." [ZFIN:curator] synonym: "dorsal fin support" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001124 ! dorsal fin skeleton [Term] id: TAO:0001420 name: anal fin pterygiophore def: "A range of twelve to fourteen rod-like internal median skeletal support structures of the anal fin, comprised of both bone and cartilage and found between vertebrae 14 and 21." [ZFIN:curator] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000167 ! anal fin skeleton [Term] id: TAO:0001421 name: anal fin lepidotrichium def: "Lepidotrichium which is part of the anal fin." [ZFIN:curator] synonym: "anal fin lepidotrichia" EXACT PLURAL [] synonym: "anal fin ray" EXACT [] is_a: TAO:0001554 ! lepidotrichium relationship: OBO_REL:part_of TAO:0000167 ! anal fin skeleton [Term] id: TAO:0001422 name: hyosymplectic cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates with the chondrocranium dorsally, the opercle bone posteriorly, and the palatoquadrate cartilage anteriorly." [ZFIN:curator] synonym: "symplectic cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001401 ! dorsal hyoid arch [Term] id: TAO:0001423 name: parachordal cartilage def: "Rod-shaped paired cartilages on either side of the notochord. They unite, forming the base of the chondrocranium and are replaced by the prootic bones." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0000189 ! otic region relationship: OBO_REL:part_of TAO:0001414 ! occipital region relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001424 name: chondrocranium alt_id: TAO:0000377 def: "Anatomical cluster that is part of the cranium and composed of cartilage and cartilage replacement bones." [ZFIN:curator] synonym: "chondocranium" EXACT [] synonym: "neurocranium" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0001425 name: basal plate cartilage is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0001423 ! parachordal cartilage relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001426 name: posterior naris synonym: "posterior nostril" EXACT [] is_a: TAO:0000550 ! naris [Term] id: TAO:0001427 name: anterior naris synonym: "anterior nostril" EXACT [] is_a: TAO:0000550 ! naris [Term] id: TAO:0001428 name: olfactory rosette synonym: "nasal rosette" EXACT [] relationship: OBO_REL:part_of TAO:0000047 ! peripheral olfactory organ [Term] id: TAO:0001429 name: raphe nucleus relationship: OBO_REL:part_of TAO:0000241 ! midline column [Term] id: TAO:0001430 name: pneumatic duct def: "A duct connecting the esophagus to the posterior chamber of the swim bladder. Finney et al, 2006." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000204 ! esophagus [Term] id: TAO:0001431 name: primitive olfactory epithelium relationship: OBO_REL:part_of TAO:0000048 ! olfactory placode [Term] id: TAO:0001432 name: anterior sclerotic bone def: "Sclerotic bone that is located anterior to the eye." [TAO:wd] is_a: TAO:0001411 ! sclerotic bone [Term] id: TAO:0001433 name: posterior sclerotic bone def: "Sclerotic bone that is located posterior to the eye." [TAO:wd] is_a: TAO:0001411 ! sclerotic bone [Term] id: TAO:0001434 name: floor plate neural tube is_a: TAO:0000022 ! floor plate relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0001435 name: lateral wall neural tube relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0001436 name: roof plate neural tube relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0001437 name: ductus communicans def: "The constriction between the anterior and posterior chambers of the swim bladder. There does not appear to be an identifiable sphincter in the ductus, and therefore other musculature may regulate its opening. Finney et al, 2006." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000076 ! swim bladder [Term] id: TAO:0001438 name: coelom synonym: "body cavity" EXACT [] relationship: OBO_REL:part_of TAO:0001115 ! trunk [Term] id: TAO:0001439 name: anatomical system def: "Anatomical group that has as its parts distinct anatomical structures interconnected by anatomical structures at a lower level of granularity." [ZFIN:curator] xref: CARO:0000011 is_a: TAO:0001512 ! anatomical group relationship: OBO_REL:part_of TAO:0001094 ! body [Term] id: TAO:0001440 name: rhombic lip def: "The interface between the dorsal neuroepithelium and the roofplate of the fourth ventricle. The source of a number of migratory neuron populations of the hindbrain." [ZFIN:curator] synonym: "presumptive cerebellum" EXACT [] relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0001441 name: lower rhombic lip def: "Posterior portion of the rhombic lip contained within rhombomeres 2-8. Gives rise to several brainstem nuclei and choroid plexus." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 relationship: OBO_REL:part_of TAO:0000153 ! rhombomere 8 relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 relationship: OBO_REL:part_of TAO:0000949 ! rhombomere 7 relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 relationship: OBO_REL:part_of TAO:0001440 ! rhombic lip [Term] id: TAO:0001442 name: upper rhombic lip def: "Anterior-most region of dorsal hindbrain within rhombomere 1, adjacent the midbrain-hindbrain boundary." [ZFIN:curator] synonym: "cerebellar anlage" EXACT [] synonym: "presumptive cerebellum" EXACT [] relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 relationship: OBO_REL:part_of TAO:0001440 ! rhombic lip [Term] id: TAO:0001443 name: choroid plexus def: "A tuft of capillaries that project into the ventricles of the brain and secretes cerebral spinal fluid. The choroid plexus is covered by a cuboidal epithelium which maintains the integrity of the blood-brain barrier." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0001444 name: choroid plexus third ventricle is_a: TAO:0001443 ! choroid plexus relationship: OBO_REL:part_of TAO:0000161 ! third ventricle [Term] id: TAO:0001445 name: choroid plexus tectal ventricle is_a: TAO:0001443 ! choroid plexus relationship: OBO_REL:part_of TAO:0000159 ! tectal ventricle [Term] id: TAO:0001446 name: choroid plexus fourth ventricle is_a: TAO:0001443 ! choroid plexus relationship: OBO_REL:part_of TAO:0000110 ! fourth ventricle [Term] id: TAO:0001447 name: choroid plexus telencephalic ventricle is_a: TAO:0001443 ! choroid plexus relationship: OBO_REL:part_of TAO:0000696 ! telencephalic ventricle [Term] id: TAO:0001448 name: ultimobranchial body relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0001449 name: mesenchyme pelvic fin is_a: TAO:0000393 ! mesenchyme relationship: develops_from TAO:0001386 ! mesoderm pelvic fin bud relationship: OBO_REL:part_of TAO:0001184 ! pelvic fin [Term] id: TAO:0001450 name: apical ectodermal ridge pelvic fin is_a: TAO:0002146 ! apical ectodermal ridge relationship: develops_from TAO:0001385 ! apical ectodermal ridge pelvic fin bud relationship: OBO_REL:part_of TAO:0001184 ! pelvic fin [Term] id: TAO:0001451 name: zone of polarizing activity pectoral fin bud def: "A small group of mesodermal cells located at the posterior margin of the developing fin bud. the ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. Gibert et al., 2006." [ZFIN:curator] synonym: "ZPA" EXACT [] relationship: OBO_REL:part_of TAO:0000789 ! mesoderm pectoral fin bud [Term] id: TAO:0001452 name: zone of polarizing activity pelvic fin bud def: "A small group of mesodermal cells located at the posterior margin of the developing fin bud. the ZPA is thought to produce retinoic acid and thereby provides positional information to the developing bud. Gibert et al., 2006." [ZFIN:curator] synonym: "ZPA" EXACT [] relationship: OBO_REL:part_of TAO:0001386 ! mesoderm pelvic fin bud [Term] id: TAO:0001453 name: pectoral fin field relationship: OBO_REL:part_of TAO:0005042 ! posterior lateral plate mesoderm [Term] id: TAO:0001454 name: pelvic fin field relationship: OBO_REL:part_of TAO:0005042 ! posterior lateral plate mesoderm [Term] id: TAO:0001455 name: scapulocoracoid cartilage def: "Pectoral fin cartilage that consists of a paired cartilaginous plate of the embryonic primary pectoral girdle and from which the scapular and coracaoid bones ossify." [TAO:GA_TG, ZFIN:curator] synonym: "coraco-scapular cartilage" EXACT [] synonym: "scapulo-coracoid cartilage" EXACT [] is_a: TAO:0000257 ! pectoral fin cartilage relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle [Term] id: TAO:0001456 name: pectoral fin endoskeletal disc def: "A plate-like chondrogenic condensation within the pectoral fin, which subdivides into individual radials by decomposition of extracellular matrix in the inter-radial mesenchyme (Grandel and Schulte-Merker, 1998)." [ZFIN:curator] synonym: "fin plate cartilage" EXACT [] is_a: TAO:0000257 ! pectoral fin cartilage [Term] id: TAO:0001457 name: postcranial axial cartilage def: "Cartilage which is part of the axial skeleton." [ZFIN:curator] is_a: TAO:0001501 ! cartilage relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton [Term] id: TAO:0001458 name: cranial cartilage def: "Cartilage which is part of the cranium." [ZFIN:curator] is_a: TAO:0001501 ! cartilage relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0001459 name: pelvic fin cartilage def: "Cartilage which is part of the pelvic fin." [ZFIN:curator] is_a: TAO:0001543 ! paired fin cartilage relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton [Term] id: TAO:0001460 name: pharyngeal arch cartilage synonym: "splanchnocranium cartilage" EXACT [] is_a: TAO:0001458 ! cranial cartilage relationship: OBO_REL:part_of TAO:0001216 ! splanchnocranium [Term] id: TAO:0001461 name: chondrocranium cartilage synonym: "neurocranium cartilage" EXACT [] is_a: TAO:0001458 ! cranial cartilage relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium [Term] id: TAO:0001462 name: somite border synonym: "somite border cell" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000155 ! somite [Term] id: TAO:0001463 name: melanophore stripe relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0001464 name: retinal outer nuclear layer def: "The layer within the retina where the photoreceptor cell bodies reside." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0001465 name: photoreceptor inner segment layer relationship: OBO_REL:part_of TAO:0000143 ! retinal photoreceptor layer [Term] id: TAO:0001466 name: photoreceptor outer segment layer relationship: OBO_REL:part_of TAO:0000143 ! retinal photoreceptor layer [Term] id: TAO:0001467 name: pharyngeal mesoderm relationship: OBO_REL:part_of TAO:0000056 ! pharynx [Term] id: TAO:0001468 name: anterior lateral line system def: "The anterior lateral line system develops from cranial ectodermal placodes, situated between the eye and the ear, that give rise to both the neuromasts and the anterior lateral line sensory nerves that innervate the neuromasts. The anterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians and are innervated by several lateral line nerves, which project to the hindbrain. The anterior lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] is_a: TAO:0000034 ! lateral line system [Term] id: TAO:0001469 name: lateral line def: "The lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head and body of all fishes and most amphibians. The lateral line develops from cranial ectodermal placodes situated behind the ear and between the eye and ear." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0001470 name: anterior lateral line def: "The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear." [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: develops_from TAO:0005117 ! anterior lateral line primordium relationship: OBO_REL:part_of TAO:0001468 ! anterior lateral line system [Term] id: TAO:0001471 name: posterior lateral line system def: "The posterior lateral line system develops from cranial ectodermal placodes, situated behind the ear, that give rise to both the neuromasts and the posterior lateral line sensory nerves that innervate the neuromasts. The posterior lateral line system consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The neuromasts are innervated by several lateral line nerves, which project primarily to the hindbrain. The posterior mechanosensory lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance." [ZFIN:curator] is_a: TAO:0000034 ! lateral line system [Term] id: TAO:0001472 name: anterior lateral line neuromast def: "Neuromast that is part of the anterior lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast anterior" EXACT [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0001470 ! anterior lateral line [Term] id: TAO:0001473 name: deep blastomere def: "Cells (completely cleaved), located underneath the superficial blastomeres and internal to the marginal blastomeres. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000093 ! blastomere [Term] id: TAO:0001474 name: sublingual dorsal and ventral separate def: "Anatomical cluster consisting of the paired sublingual dorsal ossification and sublingual ventral ossification." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001475 name: sublingual dorsal ossification def: "Sublingual that is the dorsal element paired with the sublingual ventral ossification." [TAO:wd] is_a: TAO:0001275 ! sublingual relationship: develops_from TAO:0001532 ! sublingual dorsal cartilage relationship: OBO_REL:part_of TAO:0001474 ! sublingual dorsal and ventral separate [Term] id: TAO:0001476 name: sublingual ventral ossification def: "Sublingual that is the ventral element paired with the sublingual dorsal ossification." [TAO:wd] is_a: TAO:0001275 ! sublingual relationship: develops_from TAO:0001545 ! sublingual ventral cartilage relationship: OBO_REL:part_of TAO:0001474 ! sublingual dorsal and ventral separate [Term] id: TAO:0001477 name: portion of tissue def: "Anatomical structure, that consists of similar cells and intercellular matrix, aggregated according to genetically determined spatial relationships." [ZFIN:curator] xref: CARO:0000043 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0001478 name: anatomical cluster def: "Anatomical group that has its parts adjacent to one another." [ZFIN:curator] xref: CARO:0000041 is_a: TAO:0001512 ! anatomical group [Term] id: TAO:0001479 name: lateral line nerve def: "Cranial nerves that carry afferent and efferent fibers for the lateral line system." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0001480 name: dorsal anterior lateral line nerve def: "Nerve fibers originating from the dorsal anterior lateral line ganglion. These rami innervate the otic, supraorbital, and infraorbital neuromasts." [ZFIN:curator] is_a: TAO:0001479 ! lateral line nerve relationship: OBO_REL:part_of TAO:0000425 ! anterior lateral line nerve [Term] id: TAO:0001481 name: ventral anterior lateral line nerve def: "Nerve fibers originating from the ventral anterior lateral line ganglion. These rami innervate the mandibular and opercular neuromasts." [ZFIN:curator] is_a: TAO:0001479 ! lateral line nerve relationship: OBO_REL:part_of TAO:0000425 ! anterior lateral line nerve [Term] id: TAO:0001482 name: middle lateral line nerve def: "Nerve fibers originating from the middle lateral line ganglion. These fibers innervate the middle lateral line." [ZFIN:curator] is_a: TAO:0001479 ! lateral line nerve relationship: OBO_REL:part_of TAO:0000175 ! posterior lateral line nerve relationship: OBO_REL:part_of TAO:0005114 ! middle lateral line system [Term] id: TAO:0001483 name: middle lateral line ganglion def: "The middle lateral line ganglion develops from a cranial ectodermal placode and contains sensory neurons that innervate the middle lateral line." [ZFIN:curator] is_a: TAO:0000120 ! lateral line ganglion relationship: OBO_REL:part_of TAO:0005114 ! middle lateral line system [Term] id: TAO:0001484 name: superficial blastomere def: "Cells (completely cleaved), located at the surface of the blastodisc, above the deep blastomeres. Kimmel et al, 1995." [ZFIN:curator] is_a: TAO:0000093 ! blastomere [Term] id: TAO:0001485 name: basal lamina def: "Acellular anatomical structure that consists of a thin sheet of fibrous proteins that underlie and support the cells of an epithelium. It separates the cells of an epithelium from any underlying tissue." [ZFIN:curator] xref: CARO:0000065 is_a: TAO:0000382 ! acellular anatomical structure [Term] id: TAO:0001486 name: epithelium def: "Portion of tissue, that consists of one or more layers of epithelial cells connected to each other by cell junctions and which is underlain by a basal lamina." [ZFIN:curator] xref: CARO:0000066 is_a: TAO:0001477 ! portion of tissue [Term] id: TAO:0001487 name: portion of organism substance def: "Material anatomical entity in a gaseous, liquid, semisolid or solid state; produced by anatomical structures or derived from inhaled and ingested substances that have been modified by anatomical structures as they pass through the body." [ZFIN:curator] xref: CARO:0000006 is_a: TAO:0001836 ! material anatomical entity [Term] id: TAO:0001488 name: multi-tissue structure def: "Anatomical structure that has as its parts two or more portions of tissue of at least two different types and which through specific morphogenetic processes forms a single distinct structural unit demarcated by bona-fide boundaries from other distinct structural units of different types." [ZFIN:curator] xref: CARO:0000055 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0001489 name: compound organ component def: "Multi-tissue structure that is part of a compound organ." [ZFIN:curator] xref: CARO:0000019 is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0001490 name: cavitated compound organ def: "Compound organ that contains one or more macroscopic anatomical spaces." [ZFIN:curator] xref: CARO:0000072 is_a: TAO:0000496 ! compound organ [Term] id: TAO:0001491 name: solid compound organ def: "Compound organ that does not contain macroscopic anatomical spaces." [ZFIN:curator] xref: CARO:0000074 is_a: TAO:0000496 ! compound organ [Term] id: TAO:0001492 name: simple organ def: "Multi-tissue structure that is not part of a compound organ." [ZFIN:curator] xref: CARO:0000021 is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0001493 name: atypical epithelium def: "Epithelium that consists of epithelial cells not arranged in one or more layers." [ZFIN:curator] xref: CARO:0000071 is_a: TAO:0001486 ! epithelium [Term] id: TAO:0001494 name: multilaminar epithelium def: "Epithelium that consists of more than one layer of epithelial cells." [ZFIN:curator] xref: CARO:0000069 is_a: TAO:0001486 ! epithelium [Term] id: TAO:0001495 name: unilaminar epithelium def: "Epithelium that consists of a single layer of epithelial cells." [ZFIN:curator] xref: CARO:0000073 is_a: TAO:0001486 ! epithelium [Term] id: TAO:0001496 name: simple columnar epithelium def: "Unilaminar epithelium that consists of a single layer of columnar cells." [ZFIN:curator] xref: CARO:0000068 is_a: TAO:0001495 ! unilaminar epithelium [Term] id: TAO:0001497 name: simple cuboidal epithelium def: "Unilaminar epithelium that consists of a single layer of cuboidal cells." [ZFIN:curator] xref: CARO:0000067 is_a: TAO:0001495 ! unilaminar epithelium [Term] id: TAO:0001498 name: simple squamous epithelium def: "Unilaminar epithelium that consists of a single layer of squamous cells." [ZFIN:curator] xref: CARO:0000070 is_a: TAO:0001495 ! unilaminar epithelium [Term] id: TAO:0001499 name: esophageal epithelium def: "Simple columnar epithelium that lines the esophagus. Chen et al, 2007." [ZFIN:curator] is_a: TAO:0001496 ! simple columnar epithelium relationship: OBO_REL:part_of TAO:0000204 ! esophagus relationship: OBO_REL:part_of TAO:0005123 ! gut epithelium [Term] id: TAO:0001500 name: auditory capsule def: "Bilaterally paired cartilage encasing the semicircular canals of the inner ear." [ZFIN:curator] synonym: "otic capsule" EXACT [] is_a: TAO:0001461 ! chondrocranium cartilage relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001501 name: cartilage def: "Portion of tissue which is connective tissue composed of collagen and/or elastin fibers and chondrocytes. Cartilage is avascular and provides both skeletal functions and a framework upon which bone is deposited." [ZFIN:curator] is_a: TAO:0001641 ! portion of connective tissue [Term] id: TAO:0001502 name: epiphyseal bar def: "Bilaterally paired medial bar of cartilage formed at midorbit through medial chondrification from triangles of cartilage that later form the junction of the taeniae marginales anterior, taeniae marginales posterior and the epiphyseal bar." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001503 name: lamina orbitonasalis def: "Cranial cartilage which is bilaterally paired and develops as a dorsal plate-like projection of the anterolateral ethmoid plate, which are oriented perpendicular to the ethmoid plate. It fuses dorsally to the taenia marginalis anterior, and it joins the ethmoid cartilage medially." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001504 name: occipital arch cartilage def: "Cranial cartilage which is a paired anterodorsal projection of the posterior end of the parachordal cartilage. It lies lateral to the notochord, just anterior to the posterior tip of the otic capsule. The bilaterally paired occipital arch cartilages fuse anterodorsally to the posterior edges of the auditory capsules and meet medially as the tectum synoticum (by 12 dpf)." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001505 name: taenia marginalis anterior def: "Cartilage bar (bilaterally paired) that grows anteroventrally from the epiphyseal bar to join the anterolatera1 edge of the ethmoid plate." [ZFIN:curator] synonym: "orbital cartilage" EXACT [] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001506 name: tectum synoticum def: "Unpaired thin dorsal sheet of cartilage that partially covers the posterior chondrocranium." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001507 name: trabecula cranii def: "Paired thin medially aligned bar of cartilage that extends from the anterior end of the chondrocranium to just anterior to the anterior end of the notochord. The posterior ends of the trabeculae cranii are continuous with the parachordal cartilages, and they enclose the hypophyseal fenestra." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0001321 ! neurocranial trabecula relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001508 name: trabecula communis def: "Cartilage formed via medial fusion between bilaterally paired trabecula crani." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0001321 ! neurocranial trabecula relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001509 name: sclerotic cartilage def: "Bilaterally paired thin continuous band of cartilage that sagitally encircles the eye." [ZFIN:curator] is_a: TAO:0001461 ! chondrocranium cartilage [Term] id: TAO:0001510 name: basihyal cartilage def: "Pharyngeal arch cartilage that is median and is the anterior-most cartilage of the ventral hyoid arch." [ZFIN:curator] synonym: "copula 1" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001891 ! basihyal element relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch [Term] id: TAO:0001511 name: interhyal cartilage alt_id: TAO:0000218 def: "Pharyngeal arch cartilage that is bilaterally paired and articulates dorsally with the hyosymplectic cartilage or the articulation of the hyomandibula and symplectic." [ZFIN:curator] comment: It articulates ventrally with the posterior end of the ceratohyal cartilage or the posterior ceratohyal. synonym: "stylohyal" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001892 ! interhyal element relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch relationship: overlaps TAO:0001841 ! interhyal-epihyal joint [Term] id: TAO:0001512 name: anatomical group alt_id: TAO:0001255 def: "Anatomical structure consisting of at least two non-overlapping organs, multi-tissue aggregates or portion of tissues or cells of different types that does not constitute an organism, organ, multi-tissue aggregate, or portion of tissue." [ZFIN:curator] xref: CARO:0000054 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0001513 name: dermomyotome def: "Epithelial sheet on the external surface of the somite that gives rise to trunk, muscle and dermis." [ZFIN:curator] relationship: develops_from TAO:0000155 ! somite [Term] id: TAO:0001514 name: bone def: "Portion of tissue which is calcified connective tissue making up the structural elements of the skeletal system." [ZFIN:curator] is_a: TAO:0001641 ! portion of connective tissue [Term] id: TAO:0001515 name: taenia marginalis posterior def: "Cartilage bar (bilaterally paired) that is first visible as an anterior extension of the auditory capsule. It grows anteriorly toward the middle of the orbit where it is connected to its mate on the other side by the epiphyseal bar." [ZFIN:curator] synonym: "orbital cartilage" EXACT [] is_a: TAO:0001461 ! chondrocranium cartilage relationship: OBO_REL:part_of TAO:0000290 ! sphenoid region relationship: overlaps TAO:0001580 ! neurocranium [Term] id: TAO:0001516 name: ceratobranchial cartilage def: "Pharyngeal arch cartilage that forms the largest skeletal element of the ventral branchial arches." [ZFIN:curator] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001898 ! ceratobranchial element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001517 name: ceratobranchial 2 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0001516 ! ceratobranchial cartilage is_a: TAO:0001900 ! ceratobranchial 2 element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001518 name: ceratobranchial 3 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0001516 ! ceratobranchial cartilage is_a: TAO:0001901 ! ceratobranchial 3 element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001519 name: ceratobranchial 4 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 4 cartilage or bone." [ZFIN:curator] is_a: TAO:0001516 ! ceratobranchial cartilage is_a: TAO:0001902 ! ceratobranchial 4 element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001520 name: ceratobranchial 1 cartilage def: "Ceratobranchial cartilage that is bilaterally paired and articulates laterally with epibranchial 1 cartilage or bone." [ZFIN:curator] is_a: TAO:0001516 ! ceratobranchial cartilage is_a: TAO:0001899 ! ceratobranchial 1 element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001521 name: ceratobranchial 5 cartilage def: "Ceratobranchial cartilage that is the most posterior, bilaterally paired ventral pharyngeal arch cartilage." [ZFIN:curator] is_a: TAO:0001516 ! ceratobranchial cartilage is_a: TAO:0001903 ! ceratobranchial 5 element relationship: OBO_REL:part_of TAO:0001229 ! gill arch 5 skeleton [Term] id: TAO:0001522 name: hypobranchial cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates medially with a median skeletal element and laterally with a ceratobranchial cartilage or bone." [ZFIN:curator] comment: The hypobranchial cartilage usually articulates medially with a basibranchial bone or cartilage. is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001893 ! hypobranchial element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001523 name: hypobranchial 4 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates posteriorly with ceratobranchial 4 cartilage or bone." [ZFIN:curator] is_a: TAO:0001522 ! hypobranchial cartilage is_a: TAO:0001897 ! hypobranchial 4 element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001524 name: hypobranchial 1 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates posteriorly with ceratobranchial 1 cartilage or bone." [ZFIN:curator] is_a: TAO:0001522 ! hypobranchial cartilage is_a: TAO:0001894 ! hypobranchial 1 element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001525 name: hypobranchial 2 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates posteriorly with ceratobranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0001522 ! hypobranchial cartilage is_a: TAO:0001895 ! hypobranchial 2 element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001526 name: hypobranchial 3 cartilage def: "Hypobranchial cartilage that is bilaterally paired and articulates posteriorly with ceratobranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0001522 ! hypobranchial cartilage is_a: TAO:0001896 ! hypobranchial 3 element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton relationship: overlaps TAO:0001863 ! inter-hypobranchial 3 joint [Term] id: TAO:0001527 name: epibranchial cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates laterally with ceratobranchial cartilage or bone." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001904 ! epibranchial element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001528 name: epibranchial 1 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 1 cartilage or bone." [ZFIN:curator] is_a: TAO:0001527 ! epibranchial cartilage is_a: TAO:0001905 ! epibranchial 1 element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001529 name: epibranchial 3 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0001527 ! epibranchial cartilage is_a: TAO:0001907 ! epibranchial 3 element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton relationship: overlaps TAO:0001861 ! epibranchial 3-pharyngobranchial 3 joint relationship: overlaps TAO:0001862 ! epibranchial 3-pharyngobranchial 4 joint [Term] id: TAO:0001530 name: epibranchial 2 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0001527 ! epibranchial cartilage is_a: TAO:0001906 ! epibranchial 2 element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001531 name: epibranchial 4 cartilage def: "Epibranchial cartilage that is bilaterally paired and articulates laterally with ceratobranchial 4 cartilage or bone." [ZFIN:curator] is_a: TAO:0001527 ! epibranchial cartilage is_a: TAO:0001908 ! epibranchial 4 element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton relationship: overlaps TAO:0001860 ! epibranchial 4-upper pharyngeal toothplate joint [Term] id: TAO:0001532 name: sublingual dorsal cartilage def: "Sublingual cartilage that is the dorsal element paired with the sublingual ventral cartilage." [TAO:wd] is_a: TAO:0001544 ! sublingual cartilage [Term] id: TAO:0001533 name: pharyngobranchial cartilage def: "Paired cartilages that project medially from the medial tips of epibranchials." [ZFIN:curator] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001909 ! pharyngobranchial element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001534 name: pharyngobranchial 3 cartilage def: "Pharyngobranchial cartilage that is bilaterally paired and articulates medially with epibranchial 3 cartilage or bone." [ZFIN:curator] is_a: TAO:0001533 ! pharyngobranchial cartilage is_a: TAO:0001912 ! pharyngobranchial 3 element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton relationship: overlaps TAO:0001861 ! epibranchial 3-pharyngobranchial 3 joint [Term] id: TAO:0001535 name: median fin cartilage is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0001536 name: pharyngobranchial 2 cartilage def: "Pharyngobranchial cartilage that is bilaterally paired and articulates medially with epibranchial 2 cartilage or bone." [ZFIN:curator] is_a: TAO:0001533 ! pharyngobranchial cartilage is_a: TAO:0001911 ! pharyngobranchial 2 element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001537 name: mesocoracoid cartilage def: "Pectoral fin cartilage that is part of the embryonic primary pectoral girdle from which the mesocoracoid bone will ossify endochondrally." [TAO:GA_TG, ZFIN:curator] is_a: TAO:0000257 ! pectoral fin cartilage [Term] id: TAO:0001538 name: pelvic radial cartilage def: "Small cartilage that forms at the posterior edge of the basipterygium." [ZFIN:curator] is_a: TAO:0001459 ! pelvic fin cartilage [Term] id: TAO:0001539 name: basipterygium cartilage def: "Bilaterally paired small, rodlike cartilages on the ventral surface of the abdomen (present at 7.9 mm). Their posterior tips expand laterally, forming L-shaped cartilages. Medially, a posterior spur of cartilage develops, which will later ossify as the ischiac process (Weitzman 1962)." [ZFIN:curator] is_a: TAO:0001459 ! pelvic fin cartilage relationship: overlaps TAO:0001939 ! inter-basipterygium joint [Term] id: TAO:0001540 name: pelvic radial 3 cartilage def: "Small cartilage that forms at the posterior and medial edge of the basipterygium." [ZFIN:curator] is_a: TAO:0001538 ! pelvic radial cartilage [Term] id: TAO:0001541 name: pelvic radial 2 cartilage def: "Small cartilage with a long posterior process and a shorter lateral one that forms at the posterior edge of the basipterygium, between radial cartilages 1 and 2." [ZFIN:curator] is_a: TAO:0001538 ! pelvic radial cartilage [Term] id: TAO:0001542 name: pelvic radial 1 cartilage def: "Small cartilage that forms at the posterior and lateral edge of the basipterygium." [ZFIN:curator] is_a: TAO:0001538 ! pelvic radial cartilage [Term] id: TAO:0001543 name: paired fin cartilage def: "Cartilage which is part of one of the paired fins." [ZFIN:curator] is_a: TAO:0001501 ! cartilage relationship: OBO_REL:part_of TAO:0000027 ! paired fin skeleton [Term] id: TAO:0001544 name: sublingual cartilage def: "Pharyngeal arch cartilage that is the median cartilage of the ventral hyoid arch, generally lying between the paired ventral hypohyals." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage [Term] id: TAO:0001545 name: sublingual ventral cartilage def: "Sublingual cartilage that is the ventral element paired with the sublingual dorsal cartilage." [TAO:wd] is_a: TAO:0001544 ! sublingual cartilage [Term] id: TAO:0001546 name: neural spine 4 def: "Neural spine that is associated with the fourth vertebra." [TAO:wd] is_a: TAO:0001336 ! neural spine [Term] id: TAO:0001547 name: abdominal scute def: "Dermal bone that is a bony plate that forms in the midline of ventral body margin between pectoral girdle and anal fin. Scutes may be present both anterior to and posterior to the pelvic girdle and fin." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton relationship: OBO_REL:part_of TAO:0001254 ! abdominal scute series [Term] id: TAO:0001548 name: intercalarium ascending process is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000525 ! intercalarium [Term] id: TAO:0001549 name: intercalarium articulating process is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000525 ! intercalarium [Term] id: TAO:0001550 name: caudal fin lepidotrichium def: "Lepidotrichium which is part of the caudal fin." [ZFIN:curator] synonym: "caudal fin ray" EXACT [] is_a: TAO:0001554 ! lepidotrichium relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0001551 name: pectoral fin lepidotrichium def: "Lepidotrichium which is part of the pectoral fin, forming the pectoral fin skeleton and articulating with the pectoral radials. A pectoral lepidotrichium i scomposed of two hemitrichia that surround bundles of actinotrichia distally." [TAO:GA_TG, ZFIN:curator] comment: Each pectoral lepidotrichium may be unsegmented (e.g., spine), segmented but unbranched (e.g., leading ray) or segmented and branched. Definition of lepidotrichium by Schultze and Arratia (1989: 217). For additional information about lepidotrichia see Arratia et al. 2001 and Arratia 2008. synonym: "pectoral fin lepidotrichia" EXACT PLURAL [] synonym: "pectoral fin ray" EXACT [] is_a: TAO:0001554 ! lepidotrichium relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton [Term] id: TAO:0001552 name: pelvic fin lepidotrichium def: "Lepidotrichium which is part of the pelvic fin." [ZFIN:curator] synonym: "pelvic fin lepidotrichia" EXACT PLURAL [] synonym: "pelvic fin ray" EXACT [] is_a: TAO:0001554 ! lepidotrichium relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton [Term] id: TAO:0001553 name: manubrium synonym: "intercalarium anterior process" EXACT [TAO:Bird and Mabee 2003] synonym: "intercalarium horizontal process" EXACT [TAO:Fink and Fink 1981] synonym: "manubrium incudus" EXACT [TAO:Bird 2003] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000525 ! intercalarium [Term] id: TAO:0001554 name: lepidotrichium def: "Dermal bone that is rod-like, formed and usually contained in a fin membrane, and jointed to or adjacent to distal radials. Lepidotrichia are formed from paired hemitrichia surrounding actinotrichia. There are usually two more lepidotrichia than distal radials." [ZFIN:curator] is_a: TAO:0001590 ! dermal bone [Term] id: TAO:0001555 name: epibranchial ganglion def: "Cranial ganglion which develops from an epibranchial placode." [ZFIN:curator] is_a: TAO:0000013 ! cranial ganglia [Term] id: TAO:0001556 name: sympathetic chain ganglion def: "Trunk ganglion which is part of a bilaterally paired set of sympathetic ganglia located anterior and lateral to the spinal cord." [ZFIN:curator] synonym: "paravertebral ganglion" EXACT [] is_a: TAO:0001573 ! trunk ganglion relationship: OBO_REL:part_of TAO:0001576 ! sympathetic nervous system [Term] id: TAO:0001557 name: pronephric glomerulus def: "Paired highly vascularized portion of the pronephros. Left and right glomeruli are fused at the midline. Begins to function between 40 and 48hpf. Drummond, 2000." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000151 ! pronephros [Term] id: TAO:0001558 name: pronephric tubule def: "Bilaterally paired tubes connecting the pronephric glomeruli to the pronephric ducts. In zebrafish and other teleosts, the pronephric nephron and tubules form after the pronephric duct, connecting to the anterior-most tip of the pronephric ducts. Drummond, 2000." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000151 ! pronephros [Term] id: TAO:0001559 name: vertebral column synonym: "vertebrae" EXACT [] relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton [Term] id: TAO:0001560 name: hypural 1 is_a: TAO:0000364 ! hypural [Term] id: TAO:0001561 name: hypural 2 is_a: TAO:0000364 ! hypural [Term] id: TAO:0001562 name: hypural 3 is_a: TAO:0000364 ! hypural [Term] id: TAO:0001563 name: hypural 4 is_a: TAO:0000364 ! hypural [Term] id: TAO:0001564 name: hypural 5 is_a: TAO:0000364 ! hypural [Term] id: TAO:0001565 name: oocyte stage II is_a: TAO:0001109 ! oocyte relationship: OBO_REL:part_of TAO:0001265 ! ovarian follicle stage II [Term] id: TAO:0001566 name: oocyte stage III is_a: TAO:0001109 ! oocyte relationship: OBO_REL:part_of TAO:0001266 ! ovarian follicle stage III [Term] id: TAO:0001567 name: oocyte stage I is_a: TAO:0001109 ! oocyte relationship: OBO_REL:part_of TAO:0001263 ! ovarian follicle stage I [Term] id: TAO:0001568 name: oocyte stage IV is_a: TAO:0001109 ! oocyte relationship: OBO_REL:part_of TAO:0001264 ! ovarian follicle stage IV [Term] id: TAO:0001569 name: oocyte stage V synonym: "mature egg" EXACT [] synonym: "unactivated egg" EXACT [] is_a: TAO:0001109 ! oocyte [Term] id: TAO:0001570 name: unfertilized egg synonym: "activated oocyte" EXACT [] is_a: TAO:0001109 ! oocyte [Term] id: TAO:0001571 name: postovulatory follicle is_a: TAO:0001110 ! ovarian follicle [Term] id: TAO:0001572 name: superior cervical ganglion def: "Trunk ganglion which is bilaterally paired and located at the anterior end of the sympathetic ganglion chain." [ZFIN:curator] synonym: "superior sympathetic cervical ganglion" EXACT [] is_a: TAO:0001573 ! trunk ganglion relationship: OBO_REL:part_of TAO:0001576 ! sympathetic nervous system [Term] id: TAO:0001573 name: trunk ganglion def: "Ganglion which is located in the trunk." [ZFIN:curator] is_a: TAO:0000190 ! ganglion [Term] id: TAO:0001574 name: autonomic nervous system synonym: "ANS" EXACT [] is_a: TAO:0000396 ! nervous system [Term] id: TAO:0001575 name: parasympathetic nervous system is_a: TAO:0001574 ! autonomic nervous system [Term] id: TAO:0001576 name: sympathetic nervous system is_a: TAO:0001574 ! autonomic nervous system [Term] id: TAO:0001577 name: premaxilla ascending process def: "Process of the premaxilla that extends posteriorly and overlays the mesethmoid." [ZFIN:curator] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000567 ! premaxilla [Term] id: TAO:0001578 name: anterior dorsomedial process of autopalatine def: "In cypriniforms the anterior portion of the palatine has a dorsomedial process which abuts against the mesethmoid. Such a process is not present in other ostariophysans or in other primitive teleosts." [ZFIN:curator] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000620 ! autopalatine [Term] id: TAO:0001579 name: ural vertebra 2 def: "Ural vertebra that is the second vertebra posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 2 (polyural terminology). Ural vertebra 2 is an unpaired median bone." [TAO:GA_TG] comment: Ural vertebrae 2 may be defined also as the second ural vertebrae bearing hypurals 3 or 3 and 4 or 3 plus more dorsal hypurals (diural terminology). is_a: TAO:0002162 ! ural vertebra [Term] id: TAO:0001580 name: neurocranium def: "Anatomical cluster that consists of the cartilages and bones that surround the brain." [TAO:MAH] synonym: "braincase" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium [Term] id: TAO:0001581 name: ural centrum 2 def: "A vertebral centrum that is located immediately posterior to ural centrum 1. Ural centrum 2 is an unpaired median bone." [TAO:GA_TG] comment: Ural centrum 2 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent, and with hypural 2 ventrally. Ural centrum 2 may be defined also as the second ural centrum bearing hypurals 3 or 3 and 4 or 3, 4 and more dorsal hypurals (diural terminology). is_a: TAO:0002085 ! ural centrum relationship: OBO_REL:part_of TAO:0001579 ! ural vertebra 2 [Term] id: TAO:0001582 name: non-Weberian precaudal vertebra is_a: TAO:0000263 ! precaudal vertebra [Term] id: TAO:0001583 name: preural centrum 1+ ural centrum 1 def: "Urostyle that is the result of fusion of preural centrum 1 with the first ural centrum (of polyural terminology)." [TAO:GA_TG] is_a: TAO:0000158 ! urostyle [Term] id: TAO:0001584 name: caudal procurrent ray def: "Caudal fin lepidotrichium that form part of the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or an epural or an uroneural (dorsal series) and with a haemal spine of a preural vertebra (ventral series). Caudal procurrent rays are shorter than the caudal principal rays. A caudal procurrent ray is an unpaired median bone." [TAO:Arratia_2008, TAO:GA_TG, TAO:wd] synonym: "caudal precurrent ray" EXACT [] synonym: "caudal procurrent lepidotrichium" EXACT [] synonym: "caudal spiny ray" EXACT [] synonym: "rudimentary ray" EXACT [] is_a: TAO:0001550 ! caudal fin lepidotrichium [Term] id: TAO:0001585 name: caudal principal ray def: "Caudal fin lepidotrichium that is adjacent to a branched ray. Caudal principal rays may be segmented but unbranched and the main element forming the dorsal or ventral leading margin of the caudal fin or a ray that may be only segmented-and-branched and forms part of the middle-posterior region of the fin. A caudal principal ray is an unpaired median bone." [TAO:GA_TG, TAO:wd] comment: Counts of caudal principal rays are taken as the number of branched rays plus two adjacent unbranched rays and counts are typically reported as, for example: 1,8,7,1 (1 unbranched and 8 branched upper rays, 7 branched and 1 unbranched lower rays). A caudal principal caudal ray may be associated with one or more hypurals or with hemal spines of preural centra 1 and 2 (Schultze and Arratia, 1989; Arratia, 2008). In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). synonym: "caudal fin principal ray" EXACT [] synonym: "caudal principal lepidotrichium" EXACT [] is_a: TAO:0001550 ! caudal fin lepidotrichium relationship: OBO_REL:part_of TAO:0002164 ! caudal principal ray set [Term] id: TAO:0001586 name: pectoral fin radial def: "Radial which develops from the pectoral fin endoskeletal disc, supports the pectoral lepidotrichia or fin rays and connects the lepidotrichia with the primary pectoral girdle." [TAO:GA_TG] comment: There are two paired series of pectoral radials, the proximal and the distal ones that may have variable shapes and sizes. is_a: TAO:0000271 ! radial relationship: develops_from TAO:0001456 ! pectoral fin endoskeletal disc relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton [Term] id: TAO:0001587 name: pectoral fin proximal radial def: "Pectoral fin radial which develops from the pectoral fin endoskeletal disc, supports a few pectoral lepidotrichia or fin rays and connects the lepidotrichia and distal radials with the primary pectoral girdle (scapula and coracoid)." [TAO:GA_TG] comment: Two to four flat or slightly rod-like proximal pectoral radials, bilaterally, can be found in teleosts. Pectoral proximal radials are commonly hour-glass or rectangular shaped. The presence of four pectoral proximal radials is interpreted as a synapomorphy of teleosts (Patterson 1977, Arratia 1999). is_a: TAO:0001586 ! pectoral fin radial [Term] id: TAO:0001588 name: pectoral fin distal radial def: "Pectoral fin radial that sometimes ossifies, develops from the pectoral fin endoskeletal disc, and is located at the proximal region of a lepidotrichium, between its hemitrichia.Pectoral fin distal radial is paired." [TAO:GA_TG] comment: A variable number of pectoral distal radials may be present in each pectoral fin. They are commonly small elements, rod-like, round or square shaped. is_a: TAO:0001586 ! pectoral fin radial [Term] id: TAO:0001589 name: propterygium def: "The propterygium is the lateralmost or anteriormost basal cartilage that originates from the pectoral fin endoskeletal disc. The bases of the pectoral lepidotrichium 1 plus the propterygium articulates with the scapula." [TAO:GA_TG] comment: The cartilaginous propterygium may partially ossify and fuse to the base of the pectoral hemilepidotrichium 1 in teleosts, but remains as a separate element in non-teleostean fishes. is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001456 ! pectoral fin endoskeletal disc relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton [Term] id: TAO:0001590 name: dermal bone def: "Intramembranous bone that forms superficially in the organism." [TAO:wd] is_a: TAO:0001644 ! intramembranous bone [Term] id: TAO:0001591 name: endochondral bone def: "Replacement bone that forms within cartilage." [TAO:wd] comment: Cartilage is frequently retained as part of bone. is_a: TAO:0001637 ! replacement bone [Term] id: TAO:0001592 name: claustrum bone def: "Endochondral bone, membrane bone, and Weberian ossicle that is located dorsal to the scaphium. The claustrum bone is bilaterally paired." [ZFIN:curator] synonym: "first Weberian ossicle" EXACT [] is_a: TAO:0000461 ! Weberian ossicle is_a: TAO:0001591 ! endochondral bone is_a: TAO:0001645 ! membrane bone relationship: develops_from TAO:0000637 ! claustrum cartilage [Term] id: TAO:0001593 name: caudal fin upper lobe def: "Surface structure that is the dorsal portion of the caudal fin." [TAO:wd] synonym: "caudal fin dorsal lobe" EXACT [] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0001058 ! caudal fin [Term] id: TAO:0001594 name: caudal fin lower lobe def: "Surface structure that is the ventral portion of the caudal fin." [TAO:wd] synonym: "caudal fin ventral lobe" EXACT [] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0001058 ! caudal fin [Term] id: TAO:0001595 name: pharyngeal arch 1 is_a: TAO:0001306 ! pharyngeal arch [Term] id: TAO:0001596 name: pharyngeal arch 2 is_a: TAO:0001306 ! pharyngeal arch [Term] id: TAO:0001597 name: gill arch alt_id: TAO:0000515 synonym: "branchial arch" EXACT [] synonym: "pharyngeal arch 3-7" EXACT [] is_a: TAO:0001306 ! pharyngeal arch relationship: OBO_REL:part_of TAO:0000354 ! gill [Term] id: TAO:0001598 name: gill arch 1 synonym: "branchial arch 1" EXACT [] synonym: "pharyngeal arch 3" EXACT [] is_a: TAO:0001597 ! gill arch [Term] id: TAO:0001599 name: gill arch 2 synonym: "branchial arch 2" EXACT [] synonym: "pharyngeal arch 4" EXACT [] is_a: TAO:0001597 ! gill arch [Term] id: TAO:0001600 name: gill arch 3 synonym: "branchial arch 3" EXACT [] synonym: "pharyngeal arch 5" EXACT [] is_a: TAO:0001597 ! gill arch [Term] id: TAO:0001601 name: gill arch 4 synonym: "branchial arch 4" EXACT [] synonym: "pharyngeal arch 6" EXACT [] is_a: TAO:0001597 ! gill arch [Term] id: TAO:0001602 name: gill arch 5 synonym: "branchial arch 5" EXACT [] synonym: "pharyngeal arch 7" EXACT [] is_a: TAO:0001597 ! gill arch [Term] id: TAO:0001603 name: maxilla ascending process def: "Process that is the upper portion of the maxilla that rests on the posterior surface of the lateral portion of the premaxilla." [TAO:wd] comment: Synonyms maxilla ascending arm used in Zanata and Vari 2005, and maxilla upper arm used in Weitzman 1962 synonym: "maxilla ascending arm" EXACT [] synonym: "maxilla upper arm" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000270 ! maxilla [Term] id: TAO:0001604 name: lateral ethmoid palatine process def: "Lateral bony projection proximal to lateral ethmoid-palatine joint, and located anterior to orbital region and posterior to olfactory region." [TAO:wd] synonym: "antorbital process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000226 ! lateral ethmoid [Term] id: TAO:0001605 name: caudal scute series is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001606 name: caudal scute def: "Dermal bone that is a median bony plate forming anterior to procurrent caudal fin rays." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton relationship: OBO_REL:part_of TAO:0001605 ! caudal scute series [Term] id: TAO:0001607 name: basipterygoid process of parasphenoid def: "Process that is the paired process of the parasphenoid that articulates with the suspensorium." [TAO:wd] synonym: "basipterygoid process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000561 ! parasphenoid [Term] id: TAO:0001608 name: autopalatine-lateral ethmoid joint def: "Joint that articulates the autopalatine and lateral ethmoid and bones. Autopalatine-lateral ethmoid joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001609 name: pharyngobranchial 2 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 2 bone." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001250 ! pharyngobranchial 2 bone [Term] id: TAO:0001610 name: quadrate dorsal process def: "An endochondral bone that is the dorsally-oriented bony extension of the quadrate, extending from the anterior portion of the bone." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. synonym: "quadrate superior arm" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000621 ! quadrate [Term] id: TAO:0001611 name: quadrate posterodorsal process def: "Process that is the posterior extension of the quadrate and located dorsal to the quadrate ventral process." [TAO:wd] comment: Term from Weitzman, 1962 and Sidlauskas and Vari, 2008. is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000621 ! quadrate [Term] id: TAO:0001612 name: sensory canal def: "Multi-tissue structure that is a fluid-filled canal in the integument and usually dermal bones, and contains one or more neuromast organs." [TAO:wd] comment: Sensory canals usually communicate with the environment via pores in the sensory canal or at the distal ends of tubules, which extend from canal where pores would otherwise be. synonym: "lateral line canal" EXACT [] synonym: "lateral-line canal" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0001613 name: dorsal fin middle radial def: "Dorsal fin radial that is the rod-like internal median skeletal support bone of the dorsal fin located between the dorsal fin proximal radial and dorsal fin distal radial." [TAO:wd] comment: Synonym dorsal fin medial radial from Weitzman, 1962. synonym: "dorsal fin medial radial" EXACT [] is_a: TAO:0001672 ! dorsal fin radial relationship: OBO_REL:part_of TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0001614 name: anal fin middle radial def: "Anal fin radial that is the rod-like internal median skeletal support bone of the anal fin located between the anal fin proximal radial and anal fin distal radial." [TAO:wd] comment: Synonym anal fin medial radial from Weitzman, 1962. synonym: "anal fin medial radial" EXACT [] synonym: "medial anal-fin radial" EXACT [] is_a: TAO:0001671 ! anal fin radial relationship: OBO_REL:part_of TAO:0001420 ! anal fin pterygiophore [Term] id: TAO:0001615 name: sphenotic spine def: "Process of the sphenotic. The process may project antero-laterally or laterally or ventro-laterally and it has different development in different fish groups. The sphenotic spine is paired." [TAO:GA_TG] synonym: "sphenotic process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000587 ! sphenotic [Term] id: TAO:0001616 name: lateral ethmoid wing def: "Superficial and lateral bony projection anterior to orbital region. Sometimes with superficial ornamentation where in direct contact with skin." [TAO:wd] comment: Synonym of lateral ethmoid wing: lateral ethmoid ventral wing (characiforms). synonym: "lateral ethmoid ventral wing" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000226 ! lateral ethmoid [Term] id: TAO:0001617 name: trunk sensory canal def: "Sensory canal on trunk which is posterior to the pectoral girdle and often reaching to or onto the caudal fin. The trunk sensory canal is bilaterally paired." [TAO:wd] comment: Pores frequently piercing scales if present; occasionally enclosed in bony ossicles. synonym: "trunk lateral line canal" EXACT [] is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001872 ! trunk sensory canal system [Term] id: TAO:0001619 name: post-otic sensory canal def: "Sensory canal between and in close proximity to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. The post-otic sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with to the trunk sensory canal and anteriorly with the otic and preoperculo-mandibular sensory canals. synonym: "post-temporal canal" EXACT [] is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001873 ! head sensory canal system [Term] id: TAO:0001620 name: lagenar capsule def: "Anatomical cluster that consists of a bulla formed by the exoccipital and basioccipital bones, and surrounds the lagena." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001621 name: otolith def: "Portion of organism substance composed of calcium carbonate located in the otolith organ." [TAO:wd] synonym: "statolith" EXACT [] is_a: TAO:0001487 ! portion of organism substance relationship: develops_from TAO:0000139 ! immature otolith [Term] id: TAO:0001622 name: odontode def: "Multi-tissue structure composed of enameloid and dentine surrounding a pulp cavity, and found either attached to dermal bone or freely in the skin." [TAO:wd] is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0001623 name: type 1 odontode def: "Odontode that is attached to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. is_a: TAO:0001622 ! odontode relationship: OBO_REL:part_of TAO:0001590 ! dermal bone [Term] id: TAO:0001624 name: type 2 odontode def: "Odontode that is attached to the skin and without association to dermal bone." [TAO:wd] comment: Term from Schaefer & Buitrago-Suarez 2002. is_a: TAO:0001622 ! odontode relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0001625 name: tooth synonym: "teeth" EXACT PLURAL [] is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0001626 name: premaxillary tooth def: "Tooth that is attached to the premaxilla." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0000567 ! premaxilla [Term] id: TAO:0001627 name: maxillary tooth def: "Tooth that is attached to the maxilla." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0000270 ! maxilla [Term] id: TAO:0001628 name: dentary tooth def: "Tooth that is attached to the dentary." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0000191 ! dentary relationship: OBO_REL:part_of TAO:0001952 ! dentary tooth row [Term] id: TAO:0001629 name: otic sensory canal def: "Sensory canal between and in close proximity posteriorly with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. The otic sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with the post-otic and preoperculo-mandibular sensory canals, and anteriorly with the supraorbital and infraorbital sensory canals. is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001873 ! head sensory canal system [Term] id: TAO:0001630 name: supratemporal sensory canal alt_id: TAO:0001618 def: "Sensory canal that crosses over the dorsal midline and in close proximity to the contralateral post-otic sensory canals. The supratemporal sensory canal is unpaired." [TAO:wd] synonym: "occipital canal" EXACT [] synonym: "occipital sensory canal" EXACT [] synonym: "supratemporal canal" EXACT [] is_a: TAO:0001612 ! sensory canal [Term] id: TAO:0001631 name: vomerine tooth def: "Tooth that is attached to the vomer." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0000308 ! vomer [Term] id: TAO:0001632 name: ectopterygoid tooth def: "Tooth that is attached to the ectopterygoid bone." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0000656 ! ectopterygoid [Term] id: TAO:0001633 name: entopterygoid tooth def: "Tooth that is attached to the entopterygoid bone." [TAO:wd] synonym: "mesopterygoid tooth" EXACT [] is_a: TAO:0001625 ! tooth [Term] id: TAO:0001634 name: pharyngobranchial 1 cartilage def: "Pharyngobranchial cartilage that is bilaterally paired and articulates medially with epibranchial 1 cartilage or bone." [TAO:wd] synonym: "infrapharyngobranchial 1 cartilage" EXACT [] is_a: TAO:0001533 ! pharyngobranchial cartilage is_a: TAO:0001910 ! pharyngobranchial 1 element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001635 name: pharyngobranchial 1 bone def: "Pharyngobranchial bone that is bilaterally paired and articulates medially with epibranchial 1 bone." [TAO:wd] synonym: "infrapharyngobranchial 1 bone" EXACT [] is_a: TAO:0000527 ! pharyngobranchial bone is_a: TAO:0001910 ! pharyngobranchial 1 element relationship: develops_from TAO:0001634 ! pharyngobranchial 1 cartilage relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001636 name: pharyngobranchial 4 bone def: "Pharyngobranchial bone that is bilaterally paired and articulates medially with epibranchial 4 bone." [TAO:wd] synonym: "infrapharyngobranchial 4 bone" EXACT [] is_a: TAO:0000527 ! pharyngobranchial bone is_a: TAO:0001913 ! pharyngobranchial 4 element relationship: develops_from TAO:0001251 ! pharyngobranchial 4 cartilage relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton relationship: overlaps TAO:0001862 ! epibranchial 3-pharyngobranchial 4 joint [Term] id: TAO:0001637 name: replacement bone def: "Bone that forms as a replacement of another structural tissue." [TAO:wd] is_a: TAO:0001514 ! bone [Term] id: TAO:0001638 name: perichondral bone def: "Replacement bone that forms within the connective tissue surrounding cartilage." [TAO:wd] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001643 ! perichondrium [Term] id: TAO:0001639 name: perichordal bone def: "Replacement bone that forms within the connective tissue surrounding the notochord." [TAO:wd] is_a: TAO:0001637 ! replacement bone relationship: develops_from TAO:0001642 ! perichordal connective tissue [Term] id: TAO:0001640 name: notochordal ossification def: "Perichordal bone that surrounds the anterior tip of the notochord." [TAO:wd] is_a: TAO:0001639 ! perichordal bone [Term] id: TAO:0001641 name: portion of connective tissue def: "Portion of tissue that consists of mesodermally derived cells and intercellular matrix comprised of protein fibers and carbohydrates, which supports, ensheathes and binds together other tissues." [TAO:wd] is_a: TAO:0001477 ! portion of tissue [Term] id: TAO:0001642 name: perichordal connective tissue def: "Portion of connective tissue which surrounds the notochord." [TAO:wd] is_a: TAO:0001641 ! portion of connective tissue [Term] id: TAO:0001643 name: perichondrium def: "Portion of connective tissue which surrounds cartilage." [TAO:wd] is_a: TAO:0001641 ! portion of connective tissue [Term] id: TAO:0001644 name: intramembranous bone def: "Bone that forms directly within mesenchyme, and does not replace other tissues." [TAO:wd] is_a: TAO:0001514 ! bone relationship: develops_from TAO:0000393 ! mesenchyme [Term] id: TAO:0001645 name: membrane bone def: "Intramembranous bone that forms deep in the organism." [TAO:wd] is_a: TAO:0001644 ! intramembranous bone [Term] id: TAO:0001647 name: pharyngeal tooth plate def: "Dermal bone of the pharyngeal arches usually bearing teeth." [TAO:wd] synonym: "pharyngeal toothplate" EXACT [] is_a: TAO:0001590 ! dermal bone [Term] id: TAO:0001648 name: basihyal tooth plate def: "Pharyngeal tooth plate that lies dorsal to the basihyal cartilage or bone." [TAO:wd] synonym: "basihyal toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch [Term] id: TAO:0001649 name: basihyal tooth def: "Tooth that is attached to the basihyal tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001648 ! basihyal tooth plate [Term] id: TAO:0001650 name: pharyngobranchial 2 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 2 bone." [TAO:wd] synonym: "pharyngobranchial 2 toothplate" EXACT [] is_a: TAO:0002015 ! pharyngobranchial tooth plate relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001651 name: pharyngobranchial 2 tooth def: "Tooth that is attached to the pharyngobranchial 2 tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001650 ! pharyngobranchial 2 tooth plate [Term] id: TAO:0001652 name: pharyngobranchial 3 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 3 bone." [TAO:wd] synonym: "pharyngobranchial 3 toothplate" EXACT [] is_a: TAO:0002015 ! pharyngobranchial tooth plate relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001653 name: pharyngobranchial 3 tooth def: "Tooth that is part of the pharyngobranchial 3 tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001652 ! pharyngobranchial 3 tooth plate [Term] id: TAO:0001654 name: upper pharyngeal 4 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4, and located anterior to upper pharyngeal 5 tooth plate." [TAO:wd] synonym: "upper pharyngeal 4 toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001655 name: upper pharyngeal 4 tooth def: "Tooth that is attached to the upper pharyngeal 4 tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001654 ! upper pharyngeal 4 tooth plate [Term] id: TAO:0001656 name: upper pharyngeal 5 tooth plate def: "Pharyngeal toothplate that lies ventral to pharyngobranchial 4, and located posterior to upper pharyngeal 4 tooth plate." [TAO:wd] synonym: "upper pharyngeal 5 toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate [Term] id: TAO:0001657 name: upper pharyngeal 5 tooth def: "Tooth that is attached to the upper pharyngeal 5 tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001656 ! upper pharyngeal 5 tooth plate [Term] id: TAO:0001658 name: upper pharyngeal tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchials 3 and 4." [TAO:wd] comment: This represents the condition found in catfishes. synonym: "upper pharyngeal toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate relationship: OBO_REL:part_of TAO:0001229 ! gill arch 5 skeleton relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton relationship: overlaps TAO:0001860 ! epibranchial 4-upper pharyngeal toothplate joint [Term] id: TAO:0001659 name: upper pharyngeal tooth def: "Tooth that is attached to the upper pharyngeal tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001658 ! upper pharyngeal tooth plate [Term] id: TAO:0001660 name: basibranchial tooth def: "Tooth that is part of the basibranchial tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001661 ! basibranchial tooth plate [Term] id: TAO:0001661 name: basibranchial tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchials 1-3." [TAO:wd] synonym: "basibranchial 1-3 toothplates" EXACT PLURAL [] synonym: "basibranchial toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001662 name: basibranchial 4 tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchial 4 bone." [TAO:wd] synonym: "basibranchial 4 toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001663 name: basibranchial 4 tooth def: "Tooth that is attached to the basibranchial 4 tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001662 ! basibranchial 4 tooth plate [Term] id: TAO:0001664 name: basibranchial 2 tooth plate def: "Pharyngeal tooth plate that lies dorsal to basibranchial 2 bone." [TAO:wd] synonym: "basibranchial 2 toothplate" EXACT [] is_a: TAO:0001647 ! pharyngeal tooth plate relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001665 name: basibranchial 2 tooth def: "Tooth that is attached to the basibranchial 2 tooth plate." [TAO:wd] is_a: TAO:0001625 ! tooth relationship: OBO_REL:part_of TAO:0001664 ! basibranchial 2 tooth plate [Term] id: TAO:0001666 name: rudimentary neural arch def: "Neural arch on the urostyle. It does not support a neural spine. Sanger and McCune 2002." [TAO:wd] is_a: TAO:0001066 ! neural arch relationship: OBO_REL:part_of TAO:0000158 ! urostyle [Term] id: TAO:0001667 name: tooth row def: "Anatomical cluster consisting of adjacent teeth constituting a row." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001668 name: anatomical space def: "Non-material anatomical entity of three dimensions, that is generated by morphogenetic or other physiologic processes; is surrounded by one or more anatomical structures; contains one or more organism substances or anatomical structures." [TAO:wd] xref: CARO:0000005 is_a: TAO:0001835 ! immaterial anatomical entity [Term] id: TAO:0001669 name: angular bone def: "Dermal bone that is located posterior to the dentary and lateral to the articular and retroarticular bones of the lower jaw. The angular forms the outer dermal sheet of the posterior part of the lower jaw. The angular bears a portion of the mandibular sensory canal. The angular is a paired bone." [TAO:GA_TG] comment: The angular fuses with the articular bone in clupeocephalans forming the anguloarticular. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch [Term] id: TAO:0001670 name: articular cartilage is_a: TAO:0001460 ! pharyngeal arch cartilage [Term] id: TAO:0001671 name: anal fin radial is_a: TAO:0000271 ! radial [Term] id: TAO:0001672 name: dorsal fin radial is_a: TAO:0000271 ! radial [Term] id: TAO:0001673 name: coronoid process is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000191 ! dentary [Term] id: TAO:0001674 name: infraorbital 6 def: "Infraorbital that is the sixth bone of the infraorbital series." [TAO:wd] synonym: "dermosphenotic" RELATED [] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001675 name: mesethmoid cornu def: "Bony projection that extends from the mesethmoid anteriorly. Mesethmoid cornua are paired processes each articulating with its ipsilateral premaxilla and both cornua bounding a median mesethmoid cleft." [TAO:pem] synonym: "cornu" EXACT [] synonym: "cornua" EXACT PLURAL [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000323 ! mesethmoid bone [Term] id: TAO:0001676 name: mesethmoid-premaxillary joint def: "Joint that articulates the mesethmoid and premaxilla. Mesethmoid-premaxillary joint is paired." [TAO:pem] is_a: TAO:0000367 ! joint [Term] id: TAO:0001677 name: mesethmoid-nasal joint def: "Joint that articulates the mesethmoid and nasal. Mesethmoid-nasal joint is paired." [TAO:pem] is_a: TAO:0000367 ! joint [Term] id: TAO:0001678 name: mesethmoid-frontal joint def: "Joint that articulates the mesethmoid and frontal. Mesethmoid-frontal joint is paired." [TAO:pem] is_a: TAO:0000367 ! joint [Term] id: TAO:0001679 name: mesethmoid-lateral ethmoid joint def: "Joint that articulates the mesethmoid and lateral ethmoid. Mesethmoid-lateral ethmoid joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001680 name: mesethmoid-vomer joint def: "Joint that articulates the mesethmoid and vomer. Mesethmoid-vomer joint is unpaired." [TAO:pem] synonym: "mesethmoid-prevomer joint" EXACT [] is_a: TAO:0000367 ! joint [Term] id: TAO:0001681 name: cornu mesial process def: "Bony projection that is mesially-directed and off the anteromedial corner of each mesethmoid cornu." [TAO:pem] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001675 ! mesethmoid cornu [Term] id: TAO:0001682 name: ligament def: "Portion of connective tissue that connects bone or cartilage." [TAO:wd] is_a: TAO:0001641 ! portion of connective tissue [Term] id: TAO:0001683 name: transcapular ligament def: "Ligament that is attached to supracleithrum and basioccipital." [TAO:wd] synonym: "Baudelot's ligament" EXACT [] synonym: "transscapular ligament" EXACT [] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001684 name: ossified transcapular ligament def: "Membrane bone that is fused to supracleithrum and is jointed to basioccipital and exoccipital." [TAO:pem] synonym: "ossified Baudelot's ligament" EXACT [] synonym: "ossified transscapular ligament" EXACT [] is_a: TAO:0001645 ! membrane bone [Term] id: TAO:0001685 name: lateral ethmoid-ectopterygoid ligament def: "Lateral ethmoid-ectopterygoid ligament is a ligament that connects the lateral ethmoid to the ectopterygoid." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001686 name: bony shelf above orbit def: "The bony shelf above orbit is an anatomial cluster formed by the dorsolateral portions of the lateral ethmoid, frontal and sphenotic bones that forms the dorsal margin of the orbit." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001687 name: interopercular-mandibular ligament def: "Interopercular-mandibular ligament is a ligament that connects the interopercle to an element of the lower jaw, typically the retroarticular." [TAO:wd] synonym: "interopercular-retroarticular ligament" EXACT [] synonym: "interoperculo-mandibular ligament" EXACT [] synonym: "interoperculomandibular ligament" EXACT [] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001688 name: palatine cartilage def: "palatine cartilage - cartilage that is separate from and anterior to the pterygoquadrate cartilage." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: develops_from TAO:0001399 ! palatoquadrate cartilage [Term] id: TAO:0001689 name: pterygoquadrate cartilage def: "pterygoquadrate cartilage - cartilage that is separate from and posterior to the palatine cartilage." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: develops_from TAO:0001399 ! palatoquadrate cartilage [Term] id: TAO:0001690 name: anterior cartilage of palatine def: "anterior cartilage of palatine - cartilage that caps the anterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: develops_from TAO:0001688 ! palatine cartilage [Term] id: TAO:0001691 name: posterior cartilage of palatine def: "posterior cartilage of palatine - cartilage that caps the posterior end of the autopalatine bone. It is typically present in adults." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: develops_from TAO:0001688 ! palatine cartilage [Term] id: TAO:0001692 name: median premaxilla def: "Dermal bone that is located in the middle of the upper jaw, independently formed by fusion of tooth bases attached to soft tissue in the middle portion of the upper lip. The median premaxilla bears teeth in adults." [TAO:wd] comment: Recorded in trichomycterid subfamilies Stegophilinae and Vandelliinae (Baskin, 1973). submitted by Mario de Pinna. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium [Term] id: TAO:0001693 name: protractor operculi def: "Muscle located in the lateral region of the cheek, linking the lateral surface of opercle with the posterolateral margin of the suspensorium (usually the preopercle)." [TAO:wd] comment: Occurs in most members of the Trichomycteridae, except in basal Copionodontinae and Trichogeninae (de Pinna, 1992). is_a: TAO:0001953 ! cranial muscle [Term] id: TAO:0001694 name: humerovertebral ligament def: "Ligament that links the tip of the postcleithral process of the cleithrum with either the vertebral column (at the vertebral parapophysis or rib of the sixth vertebra) or with the soft tissue around the postcleithral region." [TAO:wd] comment: Recorded in siluriform families Aspredinidae, Amblycipitidae, Akysidae, Sisoridae and Erethistidae (dePinna 1996). Submitted by Mario de Pinna. is_a: TAO:0001682 ! ligament [Term] id: TAO:0001695 name: mediopharyngobranchial def: "Pharyngeal arch cartilage, elongate and usually bifurcated posteriorly, located anteriorly on the upper branchial arches, attached to the anterior tips of the first infrapharyngobranchials. It supports rows of gill rakers on each side and is not homologous to other structures in the teleost gill-arch skeleton. One or two mediopharyngobranchials may be present." [TAO:wd] comment: Recorded in several Clupeoidei (Nelson, 1967). Submitted by Mario de Pinna. is_a: TAO:0001460 ! pharyngeal arch cartilage [Term] id: TAO:0001696 name: gongyloid cartilage def: "Pharyngeal arch cartilage present on the dorsal surface of the middle portion of the upper branchial arches, dorsal to the point of contact between the second and third infrapharyngobranchials. It is round or cylyndrical in shape. Not homologous to the mediopharyngobranchial." [TAO:wd] comment: Recorded in Pristigasteridae and Engraulidae, of Clupeiformes, apparently also present in Chanos, of Gonorynchiformes (Di Dario, 2002). is_a: TAO:0001460 ! pharyngeal arch cartilage [Term] id: TAO:0001697 name: transverse radial def: "Endochondral bone, which may be ossified or not in adults, located immediately anteriorly to the pterygiophore series of the anal fin. The structure is usually cylindrical, and its plane of symmetry is transverse to that of pterygiophores and fin rays." [TAO:wd] comment: Recorded in some Cetopsidae, Clariidae and Austroglanididae (Siluriformes) (De Pinna et al., 2007). is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton [Term] id: TAO:0001698 name: anal-fin stay def: "Endochondral bone located posterior to the last anal fin pterygiophore. The anal fin stay is a median bone." [TAO:wd] synonym: "anal fin stay" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000167 ! anal fin skeleton [Term] id: TAO:0001699 name: dorsal-fin stay def: "Endochondral bone located posterior to the last dorsal fin pterygiophore. The dorsal fin stay is a median bone." [TAO:wd] synonym: "dorsal fin stay" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001124 ! dorsal fin skeleton [Term] id: TAO:0001700 name: caudal-fin stay def: "Dermal bone that is located anterior to the caudal fin procurrent rays. Caudal fin stays are unpaired median bones." [TAO:wd] comment: Development of caudal fin stays appears uncertain according to several authors (e.g., Zanata and Vari 2005, Vari 1995). synonym: "caudal fin stay" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0001701 name: basibranchial 5 bone def: "Basibranchial bone that is ventral, median, and associated with pharyngeal arch 7." [TAO:wd] is_a: TAO:0000170 ! basibranchial bone is_a: TAO:0001919 ! basibranchial 5 element relationship: develops_from TAO:0001222 ! posterior copula relationship: develops_from TAO:0001866 ! basibranchial 5 cartilage [Term] id: TAO:0001702 name: infraorbital 7 def: "Infraorbital that is the seventh bone of the infraorbital series." [TAO:wd] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001703 name: infraorbital 8 def: "Infraorbital that is the eighth bone of the infraorbital series." [TAO:wd] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001704 name: infraorbital 9 def: "Infraorbital that is the ninth bone of the infraorbital series." [TAO:wd] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001705 name: infraorbital 10 def: "Infraorbital that is the tenth bone of the infraorbital series." [TAO:wd] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001706 name: infraorbital 11 def: "Infraorbital that is the eleventh bone of the infraorbital series." [TAO:wd] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001707 name: infraorbital 12 def: "Infraorbital that is the twelfth bone of the infraorbital series." [TAO:wd] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001708 name: dermosphenotic def: "Infraorbital that is the last bone of the infraorbital series, carrying the infraorbital canal, and sometimes also the supraorbital, temporal, and/or preopercular canals. The dermosphenotic is sometimes sutured or fused completely to the skull, e.g. to the autosphenotic." [TAO:wd] synonym: "infraorbital 5" RELATED [] synonym: "infraorbital 6" RELATED [] synonym: "infraorbital 7" RELATED [] synonym: "infraorbital 8" RELATED [] is_a: TAO:0000376 ! infraorbital [Term] id: TAO:0001709 name: infraorbital series def: "Anatomical cluster that is the series of dermal bones surrounding the orbit and associated with the infraorbital sensory canal." [TAO:GA_TG] comment: The infraorbital series may include the antorbital, a variable number of infraorbitals, and dermosphenotic (or posteriormost dorsal infraorbital). The infraorbital series may be formed by seven (primitively) or less bones in teleosts. Consequently, the so called dermosphenotic may correspond to the seventh, sixth or fifth bone, etc., depending on the taxon. synonym: "circumorbital series" RELATED [] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001710 name: opercle-interopercle joint def: "Joint that articulates the opercle and interopercle. Opercle-interopercle joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001711 name: frontal-pterotic joint def: "Joint that articulates the frontal and pterotic. Frontal-pterotic joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001712 name: snout def: "Surface structure that is the region of the head in front of and between the orbits, and above the lower jaw. Nares are located on the snout." [TAO:wd] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0001713 name: caudal principal ray 1 def: "Caudal principal ray that is the dorsalmost caudal principal ray of the caudal fin." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001714 name: caudal principal ray 2 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 1." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001715 name: caudal principal ray 3 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 2." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001716 name: caudal principal ray 4 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 3." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001717 name: caudal principal ray 5 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 4." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001718 name: caudal principal ray 6 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 5." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001719 name: caudal principal ray 7 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 6." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001720 name: caudal principal ray 8 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 7." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001721 name: caudal principal ray 9 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 8." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001722 name: caudal principal ray 10 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 9." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001723 name: caudal principal ray 11 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 10." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001724 name: caudal principal ray 12 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 11." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001725 name: caudal principal ray 13 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 12." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001726 name: caudal principal ray 14 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 13." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001727 name: caudal principal ray 15 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 14." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001728 name: caudal principal ray 16 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 15." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001729 name: caudal principal ray 17 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 16." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001730 name: caudal principal ray 18 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 17." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001731 name: caudal principal ray 19 def: "Caudal principal ray that is ventrally adjacent to caudal principal ray 18." [TAO:wd] comment: For reference, see Weitzman and Fink 1985 Figure 8. is_a: TAO:0001585 ! caudal principal ray [Term] id: TAO:0001732 name: vertebra 5 def: "Vertebra that is posteriorly adjacent to vertebra 4." [TAO:wd] is_a: TAO:0001189 ! vertebra relationship: overlaps TAO:0001940 ! vertebra 4-vertebra 5 joint relationship: overlaps TAO:0002054 ! vertebra 5-vertebra 6 joint [Term] id: TAO:0001733 name: mesethmoid ventral diverging lamella def: "Bony projection that is the posterolaterally oriented projection on the ventral region of the mesethmoid. Mesethmoid ventral diverging lamellae are paired and posteriorly contact the lateral ethmoid bones." [TAO:wd] comment: Reference: Weitzman 1962. is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000323 ! mesethmoid bone [Term] id: TAO:0001734 name: posterior process of basipterygium def: "Process that is the posteriorly oriented, paired projection of the basipterygium." [TAO:wd] synonym: "ischiac process" EXACT [] synonym: "ischiatic process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium [Term] id: TAO:0001735 name: scapular foramen def: "Foramen that is located in the scapula. The scapular foramen is paired and formed by a ring of bone." [TAO:wd] comment: Weitzman 1962. is_a: TAO:0001736 ! foramen [Term] id: TAO:0001736 name: foramen def: "Anatomical space that is an opening in a bone, usually for passage of blood vessels or nerves." [TAO:wd] is_a: TAO:0001668 ! anatomical space [Term] id: TAO:0001737 name: coracoid foramen def: "Foramen that is located in the coracoid." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001738 name: fontanel def: "Anatomical structure that is a membranous gap between bones of the skull." [TAO:wd] synonym: "fontanelle" EXACT [] is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0001739 name: anterior cranial fontanel def: "Fontanel that is located between the contralateral frontals and anterior to the epiphyseal bar." [TAO:wd] synonym: "anterior fontanel" EXACT [] synonym: "frontal fontanel" EXACT [] synonym: "frontal fontanelle" EXACT [] is_a: TAO:0001738 ! fontanel [Term] id: TAO:0001740 name: posterior cranial fontanel def: "Fontanel that is located posterior to the epiphyseal bar, and typically located between the contralateral frontals and parietals (if present) and bordered posteriorly by the supraoccipital." [TAO:wd] synonym: "parietal fontanel" EXACT [] synonym: "posterior fontanel" EXACT [] synonym: "posterior fontanelle" EXACT [] is_a: TAO:0001738 ! fontanel [Term] id: TAO:0001741 name: trigeminofacial foramen def: "Foramen through which branches of cranial nerves V (trigeminal) and VII (facial) exit." [TAO:wd] comment: i]In some vertebrates there are separate trigeminal foramen and facial foramen. synonym: "trigemino-facialis foramen" EXACT [] synonym: "trigeminofacial nerve foramen" EXACT [] synonym: "trigeminofacialis foramen" EXACT [] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001742 name: auditory foramen def: "Foramen through which cranial nerve VIII (auditory) exits." [TAO:wd] comment: Reference: Weitzman 1962. is_a: TAO:0001736 ! foramen [Term] id: TAO:0001743 name: fossa def: "Anatomical space that is a concavity, shallow depression, or groove on a bone." [TAO:wd] synonym: "concavity" EXACT [] synonym: "depression" EXACT [] synonym: "groove" EXACT [] is_a: TAO:0001668 ! anatomical space [Term] id: TAO:0001744 name: replacement tooth trench def: "Anatomical space within a bone in which teeth develop." [TAO:wd] synonym: "replacement tooth crypt" EXACT [] is_a: TAO:0001668 ! anatomical space [Term] id: TAO:0001745 name: premaxilla replacement tooth trench def: "Replacement tooth trench that is located in the premaxilla." [TAO:wd] is_a: TAO:0001744 ! replacement tooth trench [Term] id: TAO:0001746 name: dentary replacement tooth trench def: "Replacement tooth trench that is located in the dentary." [TAO:wd] is_a: TAO:0001744 ! replacement tooth trench [Term] id: TAO:0001747 name: lateral mesethmoid wing def: "Bony projection located on the anteroventral region of the mesethmoid which articulates with the premaxilla." [TAO:wd] comment: Synonyms: mesethmoid lateral wing (Zanata and Vari 2005) lateral ethmoid wing (Weitzman 1962) premaxillary articular process (Fink and Fink 1996). synonym: "lateral ethmoid wing" EXACT [] synonym: "mesethmoid lateral wing" EXACT [] synonym: "premaxillary articular process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000323 ! mesethmoid bone [Term] id: TAO:0001748 name: superficial ophthalmic nerve foramen def: "Foramen through which the superficial ophthalmic nerve passes." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001749 name: dentary-anguloarticular joint def: "Joint that articulates the dentary and anguloarticular. Dentary-anguloarticular joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001750 name: rib of vertebra 6 def: "Rib that articulates with the parapophysis of the sixth centrum." [TAO:wd] synonym: "sixth pleural rib" EXACT [] is_a: TAO:0000538 ! rib [Term] id: TAO:0001751 name: rib of vertebra 5 def: "Rib that articulates with the parapophysis of the fifth centrum." [TAO:wd] synonym: "fifth pleural rib" EXACT [] is_a: TAO:0000538 ! rib [Term] id: TAO:0001752 name: pre-narial cartilage def: "The pre-narial cartilage is a cartilage that is located anterior to the anterior naris." [TAO:wd] comment: Chen 1994. is_a: TAO:0001461 ! chondrocranium cartilage [Term] id: TAO:0001753 name: posttemporal fossa comment: Chen 1994 gives these two synonyms: "temporal fossa", Gauba 1967; and "temporal groove", Mahajan 1966. synonym: "temporal fossa" EXACT [] synonym: "temporal groove" EXACT [] is_a: TAO:0001743 ! fossa [Term] id: TAO:0001754 name: dorsal fin lepidotrichium 1 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001755 name: dorsal fin lepidotrichium 2 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001756 name: dorsal fin lepidotrichium 3 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001757 name: dorsal fin lepidotrichium 4 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001758 name: dorsal fin lepidotrichium 5 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001759 name: dorsal fin lepidotrichium 6 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001760 name: dorsal fin lepidotrichium 7 is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001761 name: pectoral fin lepidotrichium 1 def: "Pectoral fin lepidotrichium 1 is the leading or marginal ray of the fin and articulates with the scapula. Lepidotrichium 1 is commonly segmented but unbranched but occasionally may be a massive strong unsegmented element (e.g., spine)." [TAO:GA_TG] synonym: "pectoral fin ray 1" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001762 name: pectoral fin lepidotrichium 2 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the second most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin ray 2" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001763 name: pectoral fin lepidotrichium 3 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the third most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin ray 3" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001764 name: pectoral fin lepidotrichium 4 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fourth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin ray 4" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001765 name: pectoral fin lepidotrichium 5 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the fifth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin ray 5" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001766 name: pectoral fin lepidotrichium 6 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the sixth most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin ray 6" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001767 name: pectoral fin lepidotrichium 7 def: "Pectoral fin lepidotrichium that, in a linear sequence, is the seventh most anterior pectoral ray that it is usually branched and segmented." [TAO:GA_TG] synonym: "pectoral fin ray 7" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium [Term] id: TAO:0001768 name: retractor tentaculi def: "Bilaterally paired dorsal hyoid arch muscle that retracts maxillary barbel." [TAO:wd] is_a: TAO:0001953 ! cranial muscle [Term] id: TAO:0001769 name: anal fin lepidotrichium 1 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001770 name: anal fin lepidotrichium 2 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001771 name: anal fin lepidotrichium 3 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001772 name: anal fin lepidotrichium 4 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001773 name: anal fin lepidotrichium 5 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001774 name: anal fin lepidotrichium 6 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001775 name: anal fin lepidotrichium 7 is_a: TAO:0001421 ! anal fin lepidotrichium [Term] id: TAO:0001776 name: pelvic fin lepidotrichium 1 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001777 name: pelvic fin lepidotrichium 2 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001778 name: pelvic fin lepidotrichium 3 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001779 name: pelvic fin lepidotrichium 4 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001780 name: pelvic fin lepidotrichium 5 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001781 name: pelvic fin lepidotrichium 6 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001782 name: pelvic fin lepidotrichium 7 is_a: TAO:0001552 ! pelvic fin lepidotrichium [Term] id: TAO:0001783 name: supraoccipital crest def: "Process that is part of the supraoccipital. It is a posteriorly directed and unpaired median projection off the posterior margin of the supraoccipital bone." [TAO:GA_TG] comment: The supraoccipital crest may be small and restricted to the dorsal part of the supraoccipital, or may be large and long and extending ventrally to the dorsal margin of the foramen magnum. The supraoccipital crest may be a large process extending above the skull roof in some teleostean subgroups. synonym: "supraoccipital process" EXACT [] synonym: "supraoccipital spine" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000595 ! supraoccipital [Term] id: TAO:0001784 name: autopalatine-vomer joint def: "Joint that articulates autopalatine and vomer bones. Autopalatine-vomer joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001785 name: branched dorsal fin ray is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001786 name: unbranched dorsal fin ray is_a: TAO:0001418 ! dorsal fin lepidotrichium [Term] id: TAO:0001787 name: pectoral fin spine def: "Pectoral-fin lepidotrichium 1 with mostly co-ossified and unsegmented hemitrichia that form a stiff and usually thick shaft and enlarged basal processes that moveably articulate with the pectoral girdle. The pectoral fin spine may also result from the fusion of several lepidotrichia that form a stiff shaft." [TAO:GA_TG, TAO:wd] synonym: "pectoral spine" EXACT [] is_a: TAO:0001761 ! pectoral fin lepidotrichium 1 [Term] id: TAO:0001788 name: pelvic splint def: "Dermal bone that is located near the lateral margin of the pelvic fin, and lateral to pelvic-fin lepidotrichium 1." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton [Term] id: TAO:0001789 name: dorsal fin spine 1 def: "Dorsal-fin lepidotrichium 1 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with first (anteriormost) dorsal-fin pterygiophore." [TAO:wd] synonym: "dorsal spine 1" EXACT [] is_a: TAO:0001754 ! dorsal fin lepidotrichium 1 [Term] id: TAO:0001790 name: dorsal fin spine 2 def: "Dorsal-fin lepidotrichium 2 with co-ossified and unsegmented hemitrichia that form a stiff shaft and enlarged base that moveably articulates with second dorsal-fin pterygiophore." [TAO:wd] synonym: "dorsal spine 2" EXACT [] is_a: TAO:0001755 ! dorsal fin lepidotrichium 2 [Term] id: TAO:0001791 name: pore def: "An anatomical space that is an opening, usually at the end of a canal or duct, on the surface of the integument or the lining of an internal anatomical space." [TAO:wd] is_a: TAO:0001668 ! anatomical space relationship: OBO_REL:part_of TAO:0002097 ! sensory canal pore series [Term] id: TAO:0001792 name: pharyngobranchial 3 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 3." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001252 ! pharyngobranchial 3 bone [Term] id: TAO:0001793 name: pharyngobranchial 4 bone uncinate process def: "Bony projection that is part of the pharyngobranchial 4." [TAO:wd] synonym: "infrapharyngobranchial 4 bone uncinate process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001636 ! pharyngobranchial 4 bone [Term] id: TAO:0001794 name: orbitosphenoid-prootic joint def: "Joint that articulates orbitosphenoid and prootic bones. Orbitosphenoid-prootic joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001795 name: ceratohyal foramen def: "Foramen in the anterior ceratohyal for passage of the hyoidean artery." [TAO:wd] synonym: "bericiform foramen" EXACT [] synonym: "beryciform foramen" EXACT [] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001796 name: epibranchial 2 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 2 bone." [TAO:wd] is_a: TAO:0001382 ! epibranchial bone uncinate process relationship: OBO_REL:part_of TAO:0001246 ! epibranchial 2 bone [Term] id: TAO:0001797 name: epibranchial 1 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 1 bone." [TAO:wd] is_a: TAO:0001382 ! epibranchial bone uncinate process relationship: OBO_REL:part_of TAO:0001243 ! epibranchial 1 bone [Term] id: TAO:0001798 name: epicentral def: "Intermuscular bone that articulates with the vertebral centrum." [TAO:wd] is_a: TAO:0000526 ! intermuscular bone [Term] id: TAO:0001799 name: recessus lateralis def: "Intracranial space formed by confluence of supraorbital, infraorbital, preopercular and temporal sensory canals. See also Di Dario (2004)." [TAO:wd] is_a: TAO:0001668 ! anatomical space [Term] id: TAO:0001800 name: cephalic rib def: "Modified epicentral intermuscular bone that connects the back of the skull with the pectoral girdle." [TAO:wd] is_a: TAO:0001798 ! epicentral [Term] id: TAO:0001801 name: quadrate-hyomandibula joint def: "Joint that articulates quadrate and hyomandibula bones. Quadrate-hyomandibula joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001802 name: quadrate-anguloarticular joint def: "Joint that articulates quadrate and anguloarticular bones. Quadrate-articular joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001803 name: quadrate-metapterygoid joint def: "Joint that articulates quadrate and metapterygoid bones. Quadrate-metapterygoid joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001804 name: olfactory nerve foramen def: "Foramen for the passage of the olfactory nerve or cranial nerve 1." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001805 name: articular bone def: "Endochondral bone that is located posterior to the dentary, medial to the angular and antero-dorsal to the retroarticular forming the lower jaw. The articular bears a dorso-posterior articular facet for the condyle of the quadrate. The articular is a paired bone." [TAO:wd] comment: The articular fuses with the angular bone in clupeocephalans forming the anguloarticular. synonym: "articular" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0001205 ! Meckel's cartilage relationship: OBO_REL:part_of TAO:0001273 ! ventral mandibular arch [Term] id: TAO:0001806 name: intracranial diverticulum of swimbladder def: "An anterior extension of the swimbladder that passes through a foramen in the exoccipital; part of the otophysic connection between swimbladder and inner ear." [TAO:wd] relationship: OBO_REL:part_of TAO:0000076 ! swim bladder [Term] id: TAO:0001807 name: preepiotic fossa def: "Fossa that is a concavity on the dorsolateral surface of the skull roof found at least partially on the epiotic (epioccipital)." [TAO:wd] synonym: "preepioccipital fossa" EXACT [] is_a: TAO:0001743 ! fossa [Term] id: TAO:0001808 name: facial foramen def: "Foramen through which cranial nerve VII (facial) exits." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001809 name: trigeminal foramen def: "Foramen through which cranial nerve V (trigeminal) exits." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001810 name: supraorbital sensory canal def: "Sensory canal anterior to and in close proximity to the otic and infraorbital sensory canals. The supraorbital sensory canal is bilaterally paired." [TAO:wd] comment: May be continuous with otic and infraorbital sensory canals. synonym: "supraorbital canal" EXACT [] is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001873 ! head sensory canal system [Term] id: TAO:0001811 name: infraorbital sensory canal def: "Sensory canal lateral or ventral to and in close proximity to the otic and supraorbital sensory canals at their union. The infraorbital sensory canal is bilaterally paired and associated with the infraorbital bones." [TAO:wd] comment: May be continuous with otic and supraorbital sensory canals at their union. synonym: "infraorbital canal" EXACT [] is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001873 ! head sensory canal system [Term] id: TAO:0001812 name: preoperculo-mandibular sensory canal def: "Sensory canal lateral or ventral to and in close proximity to the otic and post-otic sensory canals at their union. The preoperculo-mandibular sensory canal is bilaterally paired and associated with the preopercle, angular and dentary bones." [TAO:wd] comment: May be continuous with the otic and post-otic sensory canals at their union. synonym: "preoperculo-mandibular canal" EXACT [] is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001873 ! head sensory canal system [Term] id: TAO:0001813 name: preopercular sensory canal def: "Sensory canal lateral or ventral to and in close proximity with the otic and post-otic sensory canals at their union, and anteroventrally with the mandibular sensory canal. The preopercular sensory canal is bilaterally paired and associated with the preopercle bone." [TAO:wd] comment: May be continuous with the otic and post-otic sensory canals at their union. is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001812 ! preoperculo-mandibular sensory canal [Term] id: TAO:0001814 name: mandibular sensory canal def: "Sensory canal anterior and ventral to and in close proximity with the preoperculo-mandibular sensory canal. The mandible sensory canal is bilaterally paired and associated with the angular and dentary bones." [TAO:wd] comment: May be continuous with the preoperculo-mandibular sensory canal. synonym: "mandibular canal" EXACT [] is_a: TAO:0001612 ! sensory canal relationship: OBO_REL:part_of TAO:0001812 ! preoperculo-mandibular sensory canal [Term] id: TAO:0001815 name: nuchal plate def: "Dermal bone that is a bony expansion in the integument anterior to or flanking the dorsal fin that is part of and at the distal end of a supraneural or dorsal fin proximal radial." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0002063 ! nuchal plate series [Term] id: TAO:0001816 name: anterior nuchal plate def: "Nuchal plate that is unpaired and part of the supraneural and in contact, or not, with the supraoccipital crest anteriorly and middle nuchal plate posteriorly." [TAO:wd] synonym: "first nuchal plate" EXACT [] is_a: TAO:0001815 ! nuchal plate relationship: OBO_REL:part_of TAO:0000442 ! supraneural bone [Term] id: TAO:0001817 name: middle nuchal plate def: "Nuchal plate that is unpaired and part of dorsal fin proximal radial 1 and usually in contact with the anterior nuchal plate and paired posterior nuchal plates." [TAO:wd] synonym: "median nuchal plate" EXACT [] synonym: "second nuchal plate" EXACT [] is_a: TAO:0001815 ! nuchal plate relationship: OBO_REL:part_of TAO:0001818 ! dorsal fin proximal radial 1 [Term] id: TAO:0001818 name: dorsal fin proximal radial 1 is_a: TAO:0000947 ! dorsal fin proximal radial [Term] id: TAO:0001819 name: dorsal fin proximal radial 2 is_a: TAO:0000947 ! dorsal fin proximal radial [Term] id: TAO:0001820 name: posterior nuchal plate def: "Paired nuchal plate that is part of dorsal fin proximal radial 2 and usually in contact with the middle nuchal plate." [TAO:wd] synonym: "third nuchal plate" EXACT [] is_a: TAO:0001815 ! nuchal plate relationship: OBO_REL:part_of TAO:0001819 ! dorsal fin proximal radial 2 [Term] id: TAO:0001821 name: notochord posterior region def: "Portion of tissue that is part of the caudal fin." [TAO:wd] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000135 ! notochord relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton [Term] id: TAO:0001822 name: epibranchial 3 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 3 bone." [TAO:wd] is_a: TAO:0001382 ! epibranchial bone uncinate process relationship: OBO_REL:part_of TAO:0001247 ! epibranchial 3 bone [Term] id: TAO:0001823 name: epibranchial 4 bone uncinate process def: "Epibranchial uncinate process that is part of epibranchial 4 bone." [TAO:wd] is_a: TAO:0001382 ! epibranchial bone uncinate process relationship: OBO_REL:part_of TAO:0001245 ! epibranchial 4 bone [Term] id: TAO:0001824 name: lateral line scale def: "Scale that is associated with the lateral line sensory canal." [TAO:wd] is_a: TAO:0000277 ! scale relationship: OBO_REL:part_of TAO:0000034 ! lateral line system relationship: OBO_REL:part_of TAO:0002099 ! lateral line scale series [Term] id: TAO:0001825 name: urohyal lateral process def: "Process that is part of the urohyal; it is the posterolaterally directed process located on the ventrolateral margin of urohyal. Urohyal lateral process is paired." [TAO:wd] comment: Synonyms: urohyal lateral lamella (Toledo-Piza 2007; Zanata and Vari 2005)\nurohyal ventral wing (Castro and Vari 2004). synonym: "urohyal lateral lamella" EXACT [] synonym: "urohyal ventral wing" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000452 ! urohyal [Term] id: TAO:0001826 name: urohyal median process def: "Process that is part of the urohyal; it is the posterodorsally directed and median process located on the dorsal margin of the urohyal." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000452 ! urohyal [Term] id: TAO:0001827 name: premaxillary-maxillary ligament def: "Ligament that connects the premaxilla to the maxilla." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001828 name: primordial ligament def: "Ligament that connects the maxilla with the lower jaw." [TAO:wd] comment: Synonym articular-maxillary ligament (Alexander 1964). synonym: "articular-maxillary ligament" EXACT [] synonym: "ligamentum primordiale " EXACT [] synonym: "maxillo-mandibular ligament" EXACT [] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001829 name: dorsal caudal procurrent ray def: "Caudal procurrent ray that forms part of the anterior dorsal series of lepidotrichia of the caudal fin and may be associated with a neural spine or a epural or a uroneural. A pair of hemitrichia forms each ray." [TAO:Arratia_2008, TAO:wd] synonym: "dorsal procurrent caudal-fin ray" EXACT [] is_a: TAO:0001584 ! caudal procurrent ray [Term] id: TAO:0001830 name: ventral caudal procurrent ray def: "Caudal procurrent ray that forms part of the anterior ventral series of lepidotrichia of the caudal fin that may be associated with a neural spine or a epural or an uroneural (dorsal series) and with a hemal spine of a preural vertebra (ventral series). A caudal procurrent ray is an unpaired median bone." [TAO:Arratia_2008, TAO:wd] synonym: "precurrent ray" EXACT [] synonym: "rudimentary ray" EXACT [] synonym: "ventral procurrent caudal-fin ray" EXACT [] is_a: TAO:0001584 ! caudal procurrent ray [Term] id: TAO:0001831 name: pterosphenoid-orbitosphenoid joint def: "Joint that articulates the pterosphenoid and orbitosphenoid. Pterosphenoid-orbitosphenoid joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001832 name: parasphenoid-basioccipital joint def: "Joint that articulates the parasphenoid and basioccipital. Parasphenoid-basioccipital joint is unpaired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001833 name: premaxillary tooth row def: "Tooth row that is on the premaxilla." [TAO:wd] is_a: TAO:0001667 ! tooth row [Term] id: TAO:0001834 name: process alt_id: TAO:0001646 def: "Anatomical structure that is a natural outgrowth, projection, or appendage. A process can be part of a bone, cartilage, tissue, fin, scale, etc." [TAO:wd] synonym: "bony projection" EXACT [] synonym: "flange" EXACT [] synonym: "lamellae" EXACT [] synonym: "laminae" EXACT [] synonym: "projection" EXACT [] synonym: "ridge" EXACT [] synonym: "shelf" EXACT [] xref: TAO:0001637 is_a: TAO:0000037 ! anatomical structure [Term] id: TAO:0001835 name: immaterial anatomical entity def: "Anatomical entity that has no mass." [TAO:wd] xref: CARO:0000007 is_a: TAO:0100000 ! teleost anatomical entity [Term] id: TAO:0001836 name: material anatomical entity def: "Anatomical entity that has mass." [TAO:wd] xref: CARO:0000006 is_a: TAO:0100000 ! teleost anatomical entity [Term] id: TAO:0001837 name: anatomical line def: "Non-material anatomical entity of one dimension, which forms a boundary of an anatomical surface or is a modulation of an anatomical surface." [TAO:wd] xref: CARO:0000008 is_a: TAO:0001835 ! immaterial anatomical entity [Term] id: TAO:0001838 name: groove is_a: TAO:0001837 ! anatomical line [Term] id: TAO:0001839 name: anatomical point def: "Non-material anatomical entity of zero dimension, which forms a boundary of an anatomical line or surface." [TAO:wd] xref: CARO:0000009 is_a: TAO:0001835 ! immaterial anatomical entity [Term] id: TAO:0001840 name: tip def: "Anatomical point that is the apex of a projection or anything long and tapered; can be bony or cartilage" [TAO:wd] is_a: TAO:0001839 ! anatomical point relationship: OBO_REL:part_of TAO:0001834 ! process [Term] id: TAO:0001841 name: interhyal-epihyal joint def: "Joint that articulates the interhyal and epihyal bones, or interhyal and ceratohyal cartilages. Interhyal-epihyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001842 name: epihyal-ceratohyal joint def: "Joint that articulates the epihyal and ceratohyal bones. Epihyal-ceratohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001843 name: ceratohyal-dorsal hypohyal joint def: "Joint that articulates the ceratohyal and dorsal hypohyal bones. Ceratohyal-dorsal hypohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001844 name: ceratohyal-ventral hypohyal joint def: "Joint that articulates the ceratohyal and ventral hypohyal bones. Ceratohyal-ventral hypohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001845 name: dorsal hypohyal-ventral hypohyal joint def: "Joint that articulates the dorsal hypohyal and ventral hypohyal bones. Dorsal hypohyal-ventral hypohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001846 name: inter-ventral hypohyal joint def: "Joint that articulates the contralateral ventral hypohyal bones or the contralateral ceratobranchial cartilages. Inter-ventral hypohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001847 name: dorsal hypohyal-urohyal joint def: "Joint that articulates the dorsal hypohyal and urohyal bones. Dorsal hypohyal-urohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001848 name: ventral hypohyal-urohyal joint def: "Joint that articulates the ventral hypohyal and urohyal bones. Ventral hypohyal-urohyal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001849 name: epihyal-branchiostegal ray joint def: "Joint that articulates the epihyal and branchiostegal ray bones. Epihyal-branchiostegal ray joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001850 name: ceratohyal-branchiostegal ray joint def: "Joint that articulates the ceratohyal and branchiostegal ray bones. Ceratohyal-branchiostegal ray joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001851 name: mandibular symphysis def: "Joint that articulates the left and right dentary bones. Mandibular symphysis is unpaired." [TAO:wd] synonym: "dentary symphysis" EXACT [] synonym: "inter-dentary joint" EXACT [] synonym: "inter-mandibular joint" EXACT [] is_a: TAO:0000367 ! joint [Term] id: TAO:0001852 name: postcleithrum 1 def: "Postcleithrum that anteriorly articulates with the supracleithrum and/or the cleithrum of the pectoral girdle; most dorsal element in a series of postcleithra." [TAO:GA_TG, TAO:wd] is_a: TAO:0000410 ! postcleithrum [Term] id: TAO:0001853 name: postcleithrum 2 def: "Postcleithrum that articulates dorsally with postcleithrum 1, ventrally with postcleithrum 3, and anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] is_a: TAO:0000410 ! postcleithrum [Term] id: TAO:0001854 name: postcleithrum 3 def: "Postcleithrum that articulates dorsally with postcleithrum 2 and, sometimes, anteriorly with cleithrum." [TAO:GA_TG, TAO:wd] is_a: TAO:0000410 ! postcleithrum [Term] id: TAO:0001855 name: hyomandibular condyle for the opercle def: "Process on the dorso-posterior margin of the hyomandibula cartilage or bone that articulates with a depression on the antero-dorsal margin of the opercle." [TAO:wd] synonym: "opercular process of hyomandibular" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000672 ! hyomandibula relationship: OBO_REL:part_of TAO:0001422 ! hyosymplectic cartilage [Term] id: TAO:0001856 name: gill ray def: "Gill ray is a slender, usually rod-like cartilage within a gill filament and ligamentously tied to its associated pharyngeal arch bone or cartilage." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001306 ! pharyngeal arch [Term] id: TAO:0001857 name: hyoidean artery def: "An artery that passes along the ventral portions of the hyoid arch; supplies oxygenated blood to the pseudobranch." [TAO:wd] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000354 ! gill relationship: OBO_REL:part_of TAO:0001307 ! pharyngeal musculature [Term] id: TAO:0001858 name: suprapharyngobranchial def: "A pharyngobranchial bone that articulates with the neurocranium dorsally and epibranchial 1 and pharyngobranchial 2 ventrally; lies dorsal to other elements of the dorsal portions of the branchial arches." [TAO:wd] comment: Articulates with the exoccipital or prootic depending on taxon. synonym: "branchial spiracle" EXACT [] is_a: TAO:0000527 ! pharyngobranchial bone [Term] id: TAO:0001859 name: pharyngobranchial 1 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 1 bone." [TAO:wd] synonym: "pharyngobranchial 1 toothplate" EXACT [] is_a: TAO:0002015 ! pharyngobranchial tooth plate relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001860 name: epibranchial 4-upper pharyngeal toothplate joint def: "Joint that articulates the epibranchial 4 cartilage or bone and upper pharyngeal toothplate. Epibranchial 4-upper pharyngeal toothplate joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001861 name: epibranchial 3-pharyngobranchial 3 joint def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 3 cartilage or bone. Epibranchial 3-pharyngobranchial 3 joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001862 name: epibranchial 3-pharyngobranchial 4 joint def: "Joint that articulates the epibranchial 3 cartilage or bone and pharyngobranchial 4 cartilage or bone. Epibranchial 3-pharyngobranchial 4 joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001863 name: inter-hypobranchial 3 joint def: "Joint that articulates the left and right hypobranchial 3 cartilages or bones. Inter-hypobranchial 3 joint is unpaired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001864 name: basibranchial 1 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with pharyngeal arch 3." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001915 ! basibranchial 1 element relationship: develops_from TAO:0001221 ! anterior copula [Term] id: TAO:0001865 name: basibranchial 4 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with pharyngeal arch 6." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001918 ! basibranchial 4 element relationship: develops_from TAO:0001222 ! posterior copula [Term] id: TAO:0001866 name: basibranchial 5 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with pharyngeal arch 7." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001919 ! basibranchial 5 element relationship: develops_from TAO:0001222 ! posterior copula [Term] id: TAO:0001867 name: post-ceratobranchial cartilage def: "Pharyngeal arch cartilage that is ventral, median, and at or posterior to the juncture of the bilaterally paired ceratobranchial 5 cartilage or bone." [TAO:wd] synonym: "basibranchial 6" EXACT [] synonym: "copula 4" EXACT [] synonym: "pericardial cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage [Term] id: TAO:0001868 name: hypohyal cartilage def: "Pharyngeal arch cartilage that is bilaterally paired and articulates posteriorly with the ceratohyal cartilage." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage [Term] id: TAO:0001869 name: supraneural 2 cartilage def: "Postcranial axial cartilage located dorsal to vertebra 2." [TAO:wd] is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0001870 name: supraneural 3 cartilage def: "Postcranial axial cartilage located dorsal to vertebrae 3 and 4." [TAO:wd] is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0001871 name: Weberian ossicle set def: "Anatomical cluster that consists of the Weberian ossicles." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001188 ! Weberian apparatus [Term] id: TAO:0001872 name: trunk sensory canal system def: "Lateral line system on trunk." [TAO:wd] is_a: TAO:0000034 ! lateral line system [Term] id: TAO:0001873 name: head sensory canal system def: "Lateral line system on head and pectoral girdle." [TAO:wd] is_a: TAO:0000034 ! lateral line system [Term] id: TAO:0001874 name: basibranchial 2 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with pharyngeal arch 4." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001916 ! basibranchial 2 element relationship: develops_from TAO:0001221 ! anterior copula [Term] id: TAO:0001875 name: opercular series is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001876 name: basibranchial 3 cartilage def: "Pharyngeal arch cartilage that is ventral, median, and associated with pharyngeal arch 5." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage is_a: TAO:0001917 ! basibranchial 3 element relationship: develops_from TAO:0001221 ! anterior copula [Term] id: TAO:0001877 name: neural arch 1 def: "Neural arch that is the anteriormost neural arch." [TAO:wd] is_a: TAO:0001066 ! neural arch [Term] id: TAO:0001878 name: rib of vertebra 2 def: "Rib that articulates with the parapophysis of the second centrum." [TAO:wd] is_a: TAO:0000538 ! rib [Term] id: TAO:0001879 name: rib of vertebra 1 def: "Rib that articulates with the parapophysis of the first centrum." [TAO:wd] is_a: TAO:0000538 ! rib [Term] id: TAO:0001880 name: rib of vertebra 3 def: "Rib that articulates with the parapophysis of the third centrum." [TAO:wd] is_a: TAO:0000538 ! rib [Term] id: TAO:0001881 name: rib of vertebra 4 def: "Rib that articulates with the parapophysis of the fourth centrum." [TAO:wd] is_a: TAO:0000538 ! rib [Term] id: TAO:0001882 name: parapophysis + rib of vertebra 3 is_a: TAO:0001591 ! endochondral bone [Term] id: TAO:0001883 name: parapophysis + rib of vertebra 3 + rib of vertebra 4 is_a: TAO:0001591 ! endochondral bone [Term] id: TAO:0001884 name: accessory neural arch def: "Neural arch that is located posterior to the neurocranium and anterior to neural arch 1. The accessory neural arch is not associated with a vertebral centrum." [TAO:wd] comment: Definition from de Pinna and Grande (2003). is_a: TAO:0001066 ! neural arch [Term] id: TAO:0001885 name: neural spine 1 def: "Neural spine that is associated with the first vertebra." [TAO:wd] is_a: TAO:0001336 ! neural spine [Term] id: TAO:0001886 name: neural spine 2 def: "Neural spine that is associated with the second vertebra." [TAO:wd] is_a: TAO:0001336 ! neural spine [Term] id: TAO:0001887 name: neural spine 3 def: "Neural spine that is associated with the third vertebra." [TAO:wd] is_a: TAO:0001336 ! neural spine [Term] id: TAO:0001888 name: supraneural 1 bone def: "Supraneural bone located dorsal to vertebra 1." [TAO:wd] is_a: TAO:0000442 ! supraneural bone relationship: develops_from TAO:0001889 ! supraneural 1 cartilage [Term] id: TAO:0001889 name: supraneural 1 cartilage def: "Postcranial axial cartilage located dorsal to vertebra 1." [TAO:wd] is_a: TAO:0001457 ! postcranial axial cartilage [Term] id: TAO:0001890 name: skeletal element is_a: TAO:0000496 ! compound organ [Term] id: TAO:0001891 name: basihyal element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch [Term] id: TAO:0001892 name: interhyal element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0001402 ! ventral hyoid arch [Term] id: TAO:0001893 name: hypobranchial element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001894 name: hypobranchial 1 element is_a: TAO:0001893 ! hypobranchial element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001895 name: hypobranchial 2 element is_a: TAO:0001893 ! hypobranchial element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001896 name: hypobranchial 3 element is_a: TAO:0001893 ! hypobranchial element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001897 name: hypobranchial 4 element is_a: TAO:0001893 ! hypobranchial element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001898 name: ceratobranchial element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0002103 ! ceratobranchial series [Term] id: TAO:0001899 name: ceratobranchial 1 element is_a: TAO:0001898 ! ceratobranchial element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001900 name: ceratobranchial 2 element is_a: TAO:0001898 ! ceratobranchial element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001901 name: ceratobranchial 3 element is_a: TAO:0001898 ! ceratobranchial element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001902 name: ceratobranchial 4 element is_a: TAO:0001898 ! ceratobranchial element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001903 name: ceratobranchial 5 element is_a: TAO:0001898 ! ceratobranchial element relationship: OBO_REL:part_of TAO:0001229 ! gill arch 5 skeleton [Term] id: TAO:0001904 name: epibranchial element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton relationship: OBO_REL:part_of TAO:0002102 ! epibranchial series [Term] id: TAO:0001905 name: epibranchial 1 element is_a: TAO:0001904 ! epibranchial element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001906 name: epibranchial 2 element is_a: TAO:0001904 ! epibranchial element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001907 name: epibranchial 3 element is_a: TAO:0001904 ! epibranchial element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001908 name: epibranchial 4 element is_a: TAO:0001904 ! epibranchial element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001909 name: pharyngobranchial element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001910 name: pharyngobranchial 1 element is_a: TAO:0001909 ! pharyngobranchial element relationship: OBO_REL:part_of TAO:0001228 ! gill arch 1 skeleton [Term] id: TAO:0001911 name: pharyngobranchial 2 element is_a: TAO:0001909 ! pharyngobranchial element relationship: OBO_REL:part_of TAO:0001231 ! gill arch 2 skeleton [Term] id: TAO:0001912 name: pharyngobranchial 3 element is_a: TAO:0001909 ! pharyngobranchial element relationship: OBO_REL:part_of TAO:0001232 ! gill arch 3 skeleton [Term] id: TAO:0001913 name: pharyngobranchial 4 element synonym: "infrapharyngobranchial 4 element" RELATED [] is_a: TAO:0001909 ! pharyngobranchial element relationship: OBO_REL:part_of TAO:0001230 ! gill arch 4 skeleton [Term] id: TAO:0001914 name: basibranchial element is_a: TAO:0001890 ! skeletal element relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton [Term] id: TAO:0001915 name: basibranchial 1 element is_a: TAO:0001914 ! basibranchial element [Term] id: TAO:0001916 name: basibranchial 2 element is_a: TAO:0001914 ! basibranchial element [Term] id: TAO:0001917 name: basibranchial 3 element is_a: TAO:0001914 ! basibranchial element [Term] id: TAO:0001918 name: basibranchial 4 element is_a: TAO:0001914 ! basibranchial element [Term] id: TAO:0001919 name: basibranchial 5 element is_a: TAO:0001914 ! basibranchial element [Term] id: TAO:0001920 name: pseudotympanum def: "Anatomical structure that is formed as a hiatus in the muscles covering the anterior chamber of the swim bladder in the area of ribs 5 and 6." [TAO:wd] synonym: "humeral hiatus" EXACT [] is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0001921 name: adipose eyelid def: "Surface structure that is a fleshy membrane covering part of the eye." [TAO:wd] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0001114 ! head [Term] id: TAO:0001922 name: inter-frontal joint def: "Joint between the left and right frontal bone." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001923 name: aortic canal def: "Canal that houses the dorsal aorta." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001924 name: occipital artery foramen def: "Foramina that allow passage of occipital arteries." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001925 name: spiracular canal def: "Foramen for passage of nerve supplying otic lateral line." [TAO:wd] is_a: TAO:0001736 ! foramen [Term] id: TAO:0001926 name: posterior myodome def: "Fossa or chamber on posterior portion of orbital region of neurocranium that serves as attachment site for posterior extrinsic eye muscles." [TAO:wd] is_a: TAO:0001743 ! fossa [Term] id: TAO:0001927 name: anterior myodome def: "Fossa or chamber on anterior portion of orbital region of neurocranium that serves as attachment site for anterior extrinsic eye musculature." [TAO:wd] is_a: TAO:0001743 ! fossa [Term] id: TAO:0001928 name: articular fossa of opercle def: "Fossa of opercle that articulates with hyomandibular condyle for opercle." [TAO:wd] is_a: TAO:0001743 ! fossa [Term] id: TAO:0001929 name: epioccipital posterior process def: "Process of the epioccipital that extends posteriorly, is laminar in form and is usually attached to Weberian apparatus." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001412 ! epiotic [Term] id: TAO:0001930 name: accessory vomerine tooth plate def: "Dermal bone that is located lateral to vomer off midline of palate. Accessory vomerine tooth plate bears teeth and may be present as one or more pairs." [TAO:wd] comment: Accessory vomerine tooth plate is not synonymous with dermopalatine tooth plate, palatine tooth plate, or pterygoid tooth plate. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium [Term] id: TAO:0001931 name: infranuchal scute def: "Dermal bone that is an elongated plate associated with a ligment running between posterior nuchal plate and rib on vertebra 6. Infranuchal scute is paired and develops from its associated ligament and sensory canal tubular ossicle." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000434 ! skeletal system [Term] id: TAO:0001932 name: sensory canal tubular ossicle def: "Dermal bone that is ring-shaped or cylindrical and surrounds a sensory canal." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0001933 name: sensory canal tubule def: "Sensory canal that is a side branch between a sensory canal proximally and a pore at its distal end. Sensory canal tubule is bilaterally paired although often imperfectly so." [TAO:wd] is_a: TAO:0001612 ! sensory canal [Term] id: TAO:0001934 name: rostral plate def: "Dermal bone that is located on midline of snout in skin above mesethmoid and lateral ethmoid bones. Rostral plate bears type 1 odontodes and is unpaired." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium [Term] id: TAO:0001935 name: oral disk def: "Lip that is expanded to form a broad, rounded cup around the mouth." [TAO:wd] is_a: TAO:0007006 ! lip [Term] id: TAO:0001936 name: posterior nasal barbel def: "Barbel that is attached to the anterior rim of the posterior nostril. Posterior nasal barbel is paired." [TAO:wd] is_a: TAO:0000622 ! barbel [Term] id: TAO:0001937 name: anterior nasal barbel def: "Barbel that is associated with the anterior nostril. Anterior nasal barbel is paired." [TAO:wd] is_a: TAO:0000622 ! barbel [Term] id: TAO:0001938 name: maxillary barbel def: "Barbel that is attached to the distal end of the maxilla and that originates on the side of the mouth. Maxillary barbel is paired." [TAO:wd] is_a: TAO:0000622 ! barbel [Term] id: TAO:0001939 name: inter-basipterygium joint def: "Joint that articulates the left and right basipterygium cartilage or bone. Inter-basipterygium joint is unpaired." [TAO:wd] synonym: "pelvic girdle symphysis" EXACT [] synonym: "pelvic symphysis" EXACT [] is_a: TAO:0000367 ! joint [Term] id: TAO:0001940 name: vertebra 4-vertebra 5 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 4 and vertebra 5." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001941 name: orbitosphenoid-lateral ethmoid joint def: "Joint that articulates the orbitosphenoid cartilage or bone and lateral ethmoid cartilage or bone. Orbitosphenoid-lateral ethmoid joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001942 name: autopalatine-maxillary joint def: "Joint that articulates the autopalatine cartilage or bone and maxilla." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001943 name: metapterygoid-autopalatine ligament def: "Ligament that connects the metapterygoid to the autopalatine." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001944 name: lateral ethmoid-autopalatine ligament def: "Lateral ethmoid-autopalatine ligament is a ligament that connects the lateral ethmoid to the autopalatine." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001945 name: mesethmoid-premaxillary ligament def: "Mesethmoid-premaxillary ligament is a ligament that connects the mesethmoid to the premaxilla." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001946 name: mesethmoid-maxillary ligament def: "Mesethmoid-maxillary ligament is a ligament that connects the mesethmoid to the maxilla." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001947 name: hyomandibular-otic region joint def: "Joint that articulates the hyomandibular cartilage or bone and otic region cartilage or sphenotic bone, and often pterotic bone and prootic bone. Hyomandibular-otic region joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001948 name: anal-fin hook def: "Process that is part of the anal fin lepidotrichium." [TAO:wd] synonym: "anal fin hook" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001421 ! anal fin lepidotrichium created_by: wasiladahdul creation_date: 2009-05-05T10:06:49Z [Term] id: TAO:0001949 name: caudal-fin hook def: "Process that is part of the caudal fin lepidotrichium." [TAO:wd] comment: Caudal fin hook is found in some characiform fishes. synonym: "caudal fin hook" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001550 ! caudal fin lepidotrichium created_by: wasiladahdul creation_date: 2009-05-05T10:14:51Z [Term] id: TAO:0001950 name: inter-premaxillary joint def: "Joint that articulates the left and right premaxillary bones. Inter-premaxillary joint is unpaired." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-05-05T10:18:13Z [Term] id: TAO:0001951 name: skin flap def: "Surface structure that is a portion of skin that projects or hangs from the body." [TAO:wd] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0000368 ! integument created_by: wasiladahdul creation_date: 2009-05-06T03:46:51Z [Term] id: TAO:0001952 name: dentary tooth row def: "Tooth row that is on the dentary." [TAO:wd] is_a: TAO:0001667 ! tooth row created_by: wasiladahdul creation_date: 2009-05-14T10:51:21Z [Term] id: TAO:0001953 name: cranial muscle is_a: TAO:0005145 ! muscle relationship: OBO_REL:part_of TAO:0000328 ! cephalic musculature [Term] id: TAO:0001954 name: axial muscle is_a: TAO:0005145 ! muscle relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0001955 name: pigmentation synonym: "body pigmentation" RELATED [] is_a: TAO:0000292 ! surface structure [Term] id: TAO:0001956 name: epibranchial 1 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 1 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 1 bone proximal cartilage is paired." [TAO:wd] synonym: "epibranchial 1 anterior cartilage" EXACT [] synonym: "epibranchial 1 mesial cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001243 ! epibranchial 1 bone relationship: OBO_REL:part_of TAO:0001528 ! epibranchial 1 cartilage [Term] id: TAO:0001957 name: epibranchial 2 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of epibranchial 2 bone, and that usually articulates with a pharyngobranchial element. Epibranchial 2 bone proximal cartilage is paired." [TAO:w] synonym: "epibranchial 2 anterior cartilage" EXACT [] synonym: "epibranchial 2 mesial cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001246 ! epibranchial 2 bone relationship: OBO_REL:part_of TAO:0001530 ! epibranchial 2 cartilage [Term] id: TAO:0001958 name: ceratobranchial 3 bone distal cartilage def: "Pharynbeal cartilage that is part of and at the distal end of ceratobranchial 3 bone, and that usually articulates with epibranchial 3 element. Ceratobranchial 3 bone distal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 3 bone lateral cartilage" EXACT [] synonym: "ceratobranchial 3 bone posterior cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001241 ! ceratobranchial 3 bone relationship: OBO_REL:part_of TAO:0001518 ! ceratobranchial 3 cartilage [Term] id: TAO:0001959 name: ceratobranchial 4 bone proximal cartilage def: "Pharyngeal cartilage that is part of and at the proximal end of ceratobranchial 4 bone, and that usually articulates with basibranchial 4 element. Ceratobranchial 4 proximal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 4 bone anterior cartilage" EXACT [] synonym: "ceratobranchial 4 bone mesial cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001240 ! ceratobranchial 4 bone relationship: OBO_REL:part_of TAO:0001519 ! ceratobranchial 4 cartilage [Term] id: TAO:0001960 name: ceratobranchial 4 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 4 bone, and that usually articulates with epibranchial 4 element. Ceratobranchial 4 distal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 4 bone lateral cartilage" EXACT [] synonym: "ceratobranchial 4 bone posterior cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001240 ! ceratobranchial 4 bone relationship: OBO_REL:part_of TAO:0001519 ! ceratobranchial 4 cartilage [Term] id: TAO:0001961 name: ceratobranchial 5 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of ceratobranchial 5 bone. Ceratobranchial 5 bone distal cartilage is paired." [TAO:wd] synonym: "ceratobranchial 5 bone lateral cartilage" EXACT [] synonym: "ceratobranchial 5 bone posterior cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001239 ! ceratobranchial 5 bone relationship: OBO_REL:part_of TAO:0001521 ! ceratobranchial 5 cartilage [Term] id: TAO:0001962 name: hypobranchial 1 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 1 bone, and that usually articulates with ceratobranchial 1 element. Hypobranchial 1 bone distal cartilage is paired." [TAO:wd] synonym: "hypobranchial 1 bone lateral cartilage" EXACT [] synonym: "hypobranchial 1 bone posterior cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001233 ! hypobranchial 1 bone relationship: OBO_REL:part_of TAO:0001524 ! hypobranchial 1 cartilage [Term] id: TAO:0001963 name: hypobranchial 2 bone distal cartilage def: "Pharyngeal cartilage that is part of and at the distal end of hypobranchial 2 bone, and that usually articulates with ceratobranchial 2 element. Hypobranchial 2 bone distal cartilage is paired." [TAO:wd] synonym: "hypobranchial 2 bone lateral cartilage" EXACT [] synonym: "hypobranchial 2 bone posterior cartilage" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001236 ! hypobranchial 2 bone relationship: OBO_REL:part_of TAO:0001525 ! hypobranchial 2 cartilage [Term] id: TAO:0001964 name: epibranchial 3 bone uncinate process cartilage def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 3 uncinate process. epibranchial bone 3 uncinate process cartilage is paired." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001822 ! epibranchial 3 bone uncinate process [Term] id: TAO:0001965 name: epibranchial 4 bone uncinate process cartilage def: "Pharyngeal cartilage that is part of and at the distal end of epibranchial bone 4 uncinate process. Epibranchial bone 4 uncinate process cartilage is paired." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: OBO_REL:part_of TAO:0001823 ! epibranchial 4 bone uncinate process [Term] id: TAO:0001966 name: epibranchial 5 element is_a: TAO:0001904 ! epibranchial element relationship: OBO_REL:part_of TAO:0001229 ! gill arch 5 skeleton [Term] id: TAO:0001967 name: orbit def: "Anatomical space that is the concavity containing the eye." [TAO:wd] is_a: TAO:0001668 ! anatomical space relationship: OBO_REL:part_of TAO:0001410 ! orbital region [Term] id: TAO:0001968 name: outer mental barbel def: "Mental barbel that originates on the chin, in a posterolateral position relative to the inner mental barbel." [TAO:wd] is_a: TAO:0002024 ! mental barbel [Term] id: TAO:0001969 name: inner mental barbel def: "Mental barbel that originates on the chin, in an anteromedial position relative to the outer mental barbel. The inner mental barbel is nearer to the mandibular symphysis than is the outer mental barbel." [TAO:wd] is_a: TAO:0002024 ! mental barbel [Term] id: TAO:0001970 name: upper lip def: "Lip that covers the upper portion of the mouth." [TAO:wd] is_a: TAO:0007006 ! lip [Term] id: TAO:0001971 name: parapophysis 4 def: "Parapophysis that is the lateral projection from the fourth centrum. Parapophysis 4 is bilaterally paired." [TAO:wd] is_a: TAO:0001362 ! parapophysis relationship: OBO_REL:part_of TAO:0001170 ! vertebra 4 [Term] id: TAO:0001972 name: intercostal ligament def: "Ligament that connects one rib to another." [TAO:wd] is_a: TAO:0001682 ! ligament [Term] id: TAO:0001973 name: tooth cusp def: "Anatomical structure that is a natural outgrowth, prominence, or point that is part of the surface of a tooth." [TAO:wd] synonym: "cusp of tooth" EXACT [] is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0001625 ! tooth [Term] id: TAO:0001974 name: subtemporal fossa is_a: TAO:0001743 ! fossa [Term] id: TAO:0001975 name: suprabranchial artery is_a: TAO:0000005 ! artery [Term] id: TAO:0001976 name: interorbital septum def: "Anatomical cluster composed of one or more bones and tissue that separates the orbits." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster [Term] id: TAO:0001977 name: pad def: "Surface structure that is a portion of the integument thickened relative to surrounding area." [TAO:wd] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0001978 name: maxillary tooth row def: "Tooth row that is on the maxilla." [TAO:wd] is_a: TAO:0001667 ! tooth row [Term] id: TAO:0001979 name: hyomandibula-metapterygoid joint def: "Joint that articulates the hyomandibula bone and metapterygoid bone." [TAO:wd] is_a: TAO:0000367 ! joint [Term] id: TAO:0001980 name: vertebra 6 def: "Vertebra that is posteriorly adjacent to vertebra 5." [TAO:wd] is_a: TAO:0001189 ! vertebra relationship: overlaps TAO:0002054 ! vertebra 5-vertebra 6 joint relationship: overlaps TAO:0002055 ! vertebra 6 - vertebra 7 joint [Term] id: TAO:0001981 name: vertebra 7 def: "Vertebra that is posteriorly adjacent to vertebra 6." [TAO:wd] is_a: TAO:0001189 ! vertebra relationship: overlaps TAO:0002055 ! vertebra 6 - vertebra 7 joint [Term] id: TAO:0001982 name: vertebra 8 def: "Vertebra that is posteriorly adjacent to vertebra 7." [TAO:wd] is_a: TAO:0001189 ! vertebra [Term] id: TAO:0001983 name: centrum 1 def: "Centrum that is part of vertebra 1." [TAO:wd] is_a: TAO:0000126 ! centrum relationship: OBO_REL:part_of TAO:0001167 ! vertebra 1 created_by: wasiladahdul creation_date: 2009-06-11T11:45:37Z [Term] id: TAO:0001984 name: centrum 2 def: "Centrum that is part of vertebra 2." [TAO:wd] is_a: TAO:0000126 ! centrum relationship: OBO_REL:part_of TAO:0001168 ! vertebra 2 created_by: wasiladahdul creation_date: 2009-06-11T11:45:52Z [Term] id: TAO:0001985 name: centrum 3 def: "Centrum that is part of vertebra 3." [TAO:wd] is_a: TAO:0000126 ! centrum relationship: OBO_REL:part_of TAO:0001169 ! vertebra 3 created_by: wasiladahdul creation_date: 2009-06-11T11:46:01Z [Term] id: TAO:0001986 name: centrum 4 def: "Centrum that is part of vertebra 4." [TAO:wd] is_a: TAO:0000126 ! centrum relationship: OBO_REL:part_of TAO:0001170 ! vertebra 4 created_by: wasiladahdul creation_date: 2009-06-11T11:47:09Z [Term] id: TAO:0001987 name: centrum 5 def: "Centrum that is part of vertebra 5." [TAO:wd] is_a: TAO:0000126 ! centrum relationship: OBO_REL:part_of TAO:0001732 ! vertebra 5 created_by: wasiladahdul creation_date: 2009-06-11T11:48:49Z [Term] id: TAO:0001988 name: centrum 6 def: "Centrum that is part of vertebra 6." [TAO:wd] is_a: TAO:0000126 ! centrum relationship: OBO_REL:part_of TAO:0001980 ! vertebra 6 created_by: wasiladahdul creation_date: 2009-06-11T11:53:05Z [Term] id: TAO:0001989 name: mandibular-hyoid median cartilage def: "Pharyngeal arch cartilage that is a spherical mass of cartilage located between the mandibular symphysis and ventral hyoid arch. Mandibular-hyoid median cartilage is unpaired." [TAO:wd] comment: Schaefer, S. 1990. (Anatomy and relationships of the scoloplacid catfishes. Proc. Acad. Nat. Sci. Phil. 142: 167-210) described this structure in certain catfishes and applied the name hyomandibular cartilage. To avoid possible confusion of this structure with the hyomandibular cartilage (or bone) of the suspensorium, the term mandibular-hyoid median cartilage is used here. synonym: "hyomandibular cartilage sensu Schaefer (1990)" EXACT [] is_a: TAO:0001460 ! pharyngeal arch cartilage created_by: wasiladahdul creation_date: 2009-06-11T11:54:52Z [Term] id: TAO:0001990 name: epibranchial arborescent organ def: "Anatomical cluster that is an outgrowth of the soft tissue around the dorsolateral corner of a branchial arch that is internally supported by a core of rigid cartilage-like tissue. Epibranchial arborescent organ is paired." [TAO:wd] comment: Greenwood, P. H. 1961 (A revision of the genus Dinotopterus Blgr. (pisces, Clariidae) with notes on the comparative anatomy of the suprabranchial organs in the Clariidae. Bull. British Mus (Nat. His.), Zool. 7(4): 217-241.) described this structure in certain catfishes and applied the term suprabranchial organ to it. To avoid possible confusion with distinctly different structures bearing the name suprabranchial organs in other teleosts, the term epibranchial arborescent organ is used here following the lead of de Pinna 1993. synonym: "suprabranchial organ" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000056 ! pharynx created_by: wasiladahdul creation_date: 2009-06-11T11:59:01Z [Term] id: TAO:0001991 name: lateral bone def: "Membrane bone extending between a transverse process of the second proximal dorsal-fin radial and the pleural rib of the sixth vertebra. Lateral bone is paired." [TAO:wd] is_a: TAO:0001645 ! membrane bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-06-11T12:03:34Z [Term] id: TAO:0001992 name: branched anal fin ray def: "Anal fin lepidotrichium that is distally branched." [TAO:wd] synonym: "Anal fin branched ray" EXACT [] is_a: TAO:0001421 ! anal fin lepidotrichium created_by: wasiladahdul creation_date: 2009-06-11T12:06:30Z [Term] id: TAO:0001993 name: branched pectoral fin ray def: "Pectoral fin lepidotrichium that is distally branched and segmented." [TAO:wd] synonym: "pectoral fin branched ray" EXACT [] is_a: TAO:0001551 ! pectoral fin lepidotrichium created_by: wasiladahdul creation_date: 2009-06-11T12:07:55Z [Term] id: TAO:0001994 name: gill raker row def: "Anatomical cluster that consists of adjacent gill rakers constituting a row and is part of a ceratobranchial or epibranchial element of the branchial arches. Gill raker row is paired." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton created_by: wasiladahdul creation_date: 2009-06-11T12:10:08Z [Term] id: TAO:0001995 name: papilla def: "Surface structure that is a small, fleshy protuberance." [TAO:wd] synonym: "dermal papilla" EXACT [] synonym: "papillae" EXACT PLURAL [] is_a: TAO:0000292 ! surface structure created_by: wasiladahdul creation_date: 2009-06-11T12:12:11Z [Term] id: TAO:0001996 name: maxillary canal is_a: TAO:0001488 ! multi-tissue structure created_by: wasiladahdul creation_date: 2009-06-11T12:24:11Z [Term] id: TAO:0001997 name: parietal-supraoccipital def: "Compound dermal and endochondral bone that results from the fusion of the paired dermal parietal bones and the median endodermal supraoccipital. Forms the dorso-posterior element of the dermatocranium." [TAO:GA_TG] comment: A parietal-supraoccipital or parieto-supraoccipital bone is an element present in Siluriformes. synonym: "parieto-supraoccipital" EXACT [] synonym: "supraoccipital" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: develops_from TAO:0000486 ! parietal bone relationship: develops_from TAO:0000595 ! supraoccipital relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium created_by: wasiladahdul creation_date: 2009-06-11T03:36:21Z [Term] id: TAO:0001998 name: posttemporal-supracleithrum def: "Dermal bone that results from the fusion of the dermal posttemporal and the dermal supracleithrum. Forms the upper skeletal element of the pectoral girdle between the cleithrum and neurocranium. Posttemporal-supracleithrum is paired." [TAO:wd] comment: A posttemporo-supracleithrum is a bone present in Siluriformes. There are different opinions if this is the result of an ontogenetic or a phylogenetic fusion or the loss or one or other bone. synonym: "postemporo-supracleithrum" EXACT [] synonym: "posttemporal" EXACT [] synonym: "posttemporo-supracleithrum" EXACT [] synonym: "supracleithrum" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: develops_from TAO:0000549 ! posttemporal relationship: develops_from TAO:0000594 ! supracleithrum relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle created_by: wasiladahdul creation_date: 2009-06-11T03:38:32Z [Term] id: TAO:0001999 name: posterior cleithral process def: "Process arising from the posterior or postero-dorsal margin of the cleithrum dorsally adjacent to the insertion of the pectoral fin. Posterior cleithral process is paired." [TAO:wd] synonym: "humeral process" EXACT [] synonym: "postcleithral process" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000184 ! cleithrum created_by: wasiladahdul creation_date: 2009-06-11T03:51:11Z [Term] id: TAO:0002000 name: posterior dentation of pectoral fin spine def: "Process that is tooth-like or thorn-like and arising from the posteriorly-facing margin of the abducted pectoral spine." [TAO:wd] synonym: "pectoral fin spine posterior dentation" EXACT [] synonym: "posterior denticle of pectoral fin spine" EXACT [] synonym: "posterior serration of pectoral fin spine" EXACT [] synonym: "posterior thorn of pectoral fin spine" EXACT [] synonym: "posterior tooth of pectoral fin spine" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001787 ! pectoral fin spine created_by: wasiladahdul creation_date: 2009-06-11T04:33:06Z [Term] id: TAO:0002001 name: anterior dentation of pectoral fin spine def: "Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior dentation of pectoral fin spine is usually present on the proximal and/or middle section of the pectoral fin spine." [TAO:wd] synonym: "anterior denticle of pectoral fin spine" EXACT [] synonym: "anterior serration of pectoral fin spine" EXACT [] synonym: "anterior thorn of pectoral fin spine" EXACT [] synonym: "anterior tooth of pectoral fin spine" EXACT [] synonym: "pectoral fin spine anterior dentation" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001787 ! pectoral fin spine created_by: wasiladahdul creation_date: 2009-06-11T04:37:10Z [Term] id: TAO:0002002 name: anterior distal serration of pectoral fin spine def: "Process that is retrorse, thorn-like and arising from the anteriorly-facing margin of the abducted pectoral spine. Anterior distal serration of pectoral fin spine is usually present on the distal section of the pectoral fin spine." [TAO:wd] synonym: "anterior denticle of pectoral fin spine" EXACT [] synonym: "anterior serration of pectoral fin spine" EXACT [] synonym: "anterior thorn of pectoral fin spine" EXACT [] synonym: "anterior tooth of pectoral fin spine" EXACT [] synonym: "pectoral fin spine anterior distal serration" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001787 ! pectoral fin spine created_by: wasiladahdul creation_date: 2009-06-11T04:40:52Z [Term] id: TAO:0002003 name: posterior dentation of dorsal fin spine 2 def: "Process that is tooth or thorn-like and arising from the posteriorly-facing margin of the abducted dorsal-fin spine 2." [TAO:wd] synonym: "dorsal fin spine 2 posterior dentation" EXACT [] synonym: "posterior denticle of dorsal fin spine 2" EXACT [] synonym: "posterior serration of dorsal fin spine 2" EXACT [] synonym: "posterior thorn of dorsal fin spine 2" EXACT [] synonym: "posterior tooth of dorsal fin spine 2" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001790 ! dorsal fin spine 2 created_by: wasiladahdul creation_date: 2009-06-11T04:44:30Z [Term] id: TAO:0002004 name: anterior dentation of dorsal fin spine 2 def: "Process that is tooth- or thorn-like and arising from the anteriorly-facing margin of the abducted dorsal-fin spine 2." [TAO:wd] synonym: "anterior denticle of dorsal fin spine 2" EXACT [] synonym: "anterior serration of dorsal fin spine 2" EXACT [] synonym: "anterior thorn of dorsal fin spine 2" EXACT [] synonym: "anterior tooth of dorsal fin spine 2" EXACT [] synonym: "dorsal fin spine 2 anterior dentation" EXACT [] is_a: TAO:0001834 ! process created_by: wasiladahdul creation_date: 2009-06-11T04:48:14Z [Term] id: TAO:0002005 name: canal plate def: "Dermal bone that is ventral to the preopercle and bears a portion of the preopercular sensory canal." [TAO:wd] comment: The number of canal plates present can be variable. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium created_by: wasiladahdul creation_date: 2009-06-11T04:51:14Z [Term] id: TAO:0002006 name: axillary pore def: "Pore that is located ventral to the posterior cleithral process and medial to the pectoral fin. Axillary pore is at the end of a duct from an integumentary gland." [TAO:wd] is_a: TAO:0001791 ! pore created_by: wasiladahdul creation_date: 2009-06-11T04:52:13Z [Term] id: TAO:0002007 name: supraneural 4 bone def: "Supraneural dorsal to neural spine 4." [TAO:wd] is_a: TAO:0000442 ! supraneural bone created_by: wasiladahdul creation_date: 2009-06-11T05:55:33Z [Term] id: TAO:0002008 name: neural lamina def: "Neural lamina is a median, vertical ridge or bony septum between neural spine 3 and neural spine 4 on the dorsal side of the Weberian vertebra. Neural lamina is unpaired." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001190 ! Weberian vertebra created_by: wasiladahdul creation_date: 2009-06-11T05:59:09Z [Term] id: TAO:0002009 name: medial cartilage of palatine def: "Pharyngeal cartilage that caps the medial margin of the palatine at the autopalatine-lateral ethmoid joint." [TAO:wd] is_a: TAO:0001460 ! pharyngeal arch cartilage relationship: develops_from TAO:0001688 ! palatine cartilage created_by: wasiladahdul creation_date: 2009-06-11T06:02:20Z [Term] id: TAO:0002010 name: hyoideomandibular nerve def: "Nerve that is a branch of cranial nerve VII that passes through or around the suspensorium to innervate muscles and sensory organs on or near pharyngeal arch 2." [TAO:wd] is_a: TAO:0007009 ! nerve created_by: wasiladahdul creation_date: 2009-06-11T06:04:28Z [Term] id: TAO:0002011 name: lateral fontanel of frontal def: "Fontanel within the frontal bone near the frontal-sphenotic joint. Lateral fontanel of frontal is paired." [TAO:wd] comment: Original reference: de Pinna MCC, Vari RP. 1995. Monophyly and phylogenetic diagnosis of the family Cetopsidae, with synonymization of the Helogenidae (Teleostei: Siluriformes). Smithsonian Contributions to Zoology 571: 1-26. is_a: TAO:0001738 ! fontanel created_by: wasiladahdul creation_date: 2009-06-11T06:05:30Z [Term] id: TAO:0002012 name: dentary foramen def: "Foramen located on the dentary for passage of the mandibular nerve." [TAO:wd] is_a: TAO:0001736 ! foramen created_by: wasiladahdul creation_date: 2009-06-12T10:33:57Z [Term] id: TAO:0002013 name: ascending limb of ceratobranchial 5 bone def: "Process that is the dorsally directed portion of ceratobranchial 5 bone." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. is_a: TAO:0001834 ! process relationship: develops_from TAO:0002014 ! ascending limb of ceratobranchial 5 cartilage relationship: OBO_REL:part_of TAO:0001239 ! ceratobranchial 5 bone created_by: wasiladahdul creation_date: 2009-06-12T10:34:59Z [Term] id: TAO:0002014 name: ascending limb of ceratobranchial 5 cartilage def: "Process that is the dorsally directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: An ascending limb of the ceratobranchial is found in Cypriniformes. is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001521 ! ceratobranchial 5 cartilage created_by: wasiladahdul creation_date: 2009-06-12T10:38:05Z [Term] id: TAO:0002015 name: pharyngobranchial tooth plate def: "Dermal bone of upper pharyngeal arches associated with pharyngobranchial bones or cartilages, usually bearing teeth." [TAO:wd] synonym: "pharyngobranchial toothplate" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton created_by: wasiladahdul creation_date: 2009-06-12T10:57:14Z [Term] id: TAO:0002016 name: pharyngobranchial 4 tooth plate def: "Pharyngeal tooth plate that lies ventral to pharyngobranchial 4." [TAO:wd] synonym: "pharyngobranchial 4 toothplate" EXACT [] is_a: TAO:0002015 ! pharyngobranchial tooth plate created_by: wasiladahdul creation_date: 2009-06-12T11:01:06Z [Term] id: TAO:0002017 name: anterior limb of ceratobranchial 5 bone def: "Process that is the anterior and medially directed portion of ceratobranchial 5 bone part_of ceratobranchial 5 bone." [TAO:wd] comment: This term applies to cypriniform fishes. is_a: TAO:0001834 ! process relationship: develops_from TAO:0002018 ! anterior limb of ceratobranchial 5 cartilage relationship: OBO_REL:part_of TAO:0001239 ! ceratobranchial 5 bone created_by: wasiladahdul creation_date: 2009-06-12T11:16:37Z [Term] id: TAO:0002018 name: anterior limb of ceratobranchial 5 cartilage def: "Process that is the anterior and medially directed portion of ceratobranchial 5 cartilage." [TAO:wd] comment: This term applies to cypriniform fishes. is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001521 ! ceratobranchial 5 cartilage created_by: wasiladahdul creation_date: 2009-06-12T11:17:55Z [Term] id: TAO:0002019 name: pterotic-posttemporal-supracleithrum def: "Bone that is a fusion of the pterotic, posttemporal, and supracleithrum bones." [TAO:wd] synonym: "pterotic-supracleithrum" EXACT [] is_a: TAO:0001590 ! dermal bone is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001424 ! chondrocranium created_by: wasiladahdul creation_date: 2009-06-15T11:42:13Z [Term] id: TAO:0002020 name: hypomaxilla def: "Dermal bone bearing teeth located between the distal end of the premaxilla and the middle of the maxilla. The hypomaxilla is a paired bone." [TAO:ga_tg] comment: Hypomaxilla is a bone restricted to some clupeiforms. See Berry (1964) for a detailed account of the distribution of the hypomaxilla within clupeiforms and specifically in Herengula. is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch created_by: wasiladahdul creation_date: 2009-06-15T12:46:52Z [Term] id: TAO:0002021 name: ascending process of the parasphenoid def: "Process that is the lateral projection of the parasphenoid arising and articulating with the more dorsal portions of the neurocranium, usually at the level of the prootic." [TAO:wd] synonym: "ascending ramus of the parasphenoid" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000561 ! parasphenoid created_by: wasiladahdul creation_date: 2009-06-15T12:51:47Z [Term] id: TAO:0002022 name: dermethmoid def: "Dermal bone of the dorsal surface of the olfactory region. Dermethmoid can be paired or median." [TAO:wd] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region created_by: wasiladahdul creation_date: 2009-06-15T12:53:51Z [Term] id: TAO:0002023 name: second preethmoid def: "Endochondral bone found between the preethmoid and maxilla." [TAO:wd] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000351 ! olfactory region created_by: wasiladahdul creation_date: 2009-06-15T12:55:54Z [Term] id: TAO:0002024 name: mental barbel def: "Barbel that originates on the chin." [TAO:wd] is_a: TAO:0000622 ! barbel created_by: wasiladahdul creation_date: 2009-06-15T12:58:26Z [Term] id: TAO:0002025 name: optic foramen def: "Foramen in the orbital region of the neurocranium for the passage of the optic nerve (cranial nerve II)." [TAO:wd] synonym: "optic nerve foramen" EXACT [] is_a: TAO:0001736 ! foramen relationship: OBO_REL:part_of TAO:0001410 ! orbital region created_by: wasiladahdul creation_date: 2009-06-15T01:02:01Z [Term] id: TAO:0002026 name: pectoral fin proximal radial 1 def: "Pectoral fin proximal radial that is the most anterior or dorsal pectoral fin radial." [TAO:GA_TG, TAO:wd] synonym: "first pectoral basal radial" EXACT [] is_a: TAO:0001587 ! pectoral fin proximal radial created_by: wasiladahdul creation_date: 2009-06-15T01:03:50Z [Term] id: TAO:0002027 name: pectoral fin proximal radial 2 def: "Pectoral fin proximal radial that is the second most anterior or dorsal pectoral fin radial." [TAO:GA_TG, TAO:wd] synonym: "second pectoral basal radial" EXACT [] is_a: TAO:0001587 ! pectoral fin proximal radial created_by: wasiladahdul creation_date: 2009-06-15T01:04:38Z [Term] id: TAO:0002028 name: pectoral fin proximal radial 3 def: "Pectoral fin proximal radial that is the third most anterior or dorsal pectoral fin radial." [TAO:GA_TG, TAO:wd] synonym: "third pectoral basal radial" EXACT [] is_a: TAO:0001587 ! pectoral fin proximal radial created_by: wasiladahdul creation_date: 2009-06-15T01:04:42Z [Term] id: TAO:0002029 name: pectoral fin proximal radial 4 def: "Pectoral fin proximal radial that is the fourth most anterior or dorsal pectoral fin radial." [TAO:GA_TG, TAO:wd] synonym: "fourth pectoral basal radial" EXACT [] is_a: TAO:0001587 ! pectoral fin proximal radial created_by: wasiladahdul creation_date: 2009-06-15T01:04:46Z [Term] id: TAO:0002030 name: ventral keel of coracoid def: "Process on the ventral surface of the horizontal limb of the coracoid, close to and parallel to the coracoid-cleithrum joint. Ventral keel of coracoid is paired." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000332 ! coracoid created_by: wasiladahdul creation_date: 2009-06-15T01:08:59Z [Term] id: TAO:0002031 name: orbital foramen def: "Foramen in the bone or cartilage comprising the anterior wall of the orbit, and through which passes at least the deep ophthalmic branch of cranial nerve V (trigeminal)." [TAO:wd] is_a: TAO:0001736 ! foramen created_by: wasiladahdul creation_date: 2009-06-15T01:10:39Z [Term] id: TAO:0002032 name: lateral ethmoid-frontal joint def: "Joint that articulates the lateral ethmoid and frontal. lateral ethmoid-frontal joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-15T01:12:06Z [Term] id: TAO:0002033 name: prootic-pterosphenoid joint def: "Joint that articulates the prootic and pterosphenoid. prootic-pterosphenoid joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-15T01:12:43Z [Term] id: TAO:0002034 name: prootic-exoccipital joint def: "Joint that articulates the prootic and exoccipital. Prootic-exoccipital joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-15T01:13:10Z [Term] id: TAO:0002035 name: nasal capsule def: "Multi-tissue structure that is the connective tissue sheath that surrounds, except for external opening(s) in adult, the olfactory epithelium." [TAO:wd] comment: Development information from Brian Hall, Bones and Cartilage: Developmental Skeletal Biology. is_a: TAO:0001488 ! multi-tissue structure relationship: develops_from TAO:0000048 ! olfactory placode created_by: wasiladahdul creation_date: 2009-06-15T02:30:38Z [Term] id: TAO:0002036 name: intromittent organ def: "Surface structure that is an external structure of a male organism through which sperm is transferred to a female organism during mating." [TAO:wd] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0000242 ! male relationship: OBO_REL:part_of TAO:0000632 ! reproductive system created_by: wasiladahdul creation_date: 2009-06-15T02:36:48Z [Term] id: TAO:0002037 name: electric organ def: "Organ that is used to produce an electric field, i.e. an electric organ discharge (EOD)." [TAO:wd] is_a: TAO:0000496 ! compound organ created_by: wasiladahdul creation_date: 2009-06-15T02:59:58Z [Term] id: TAO:0002038 name: basioccipital-exoccipital joint def: "Joint that articulates the basioccipital and exoccipital. Basioccipital-exoccipital joint is paired." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-15T03:25:41Z [Term] id: TAO:0002039 name: dilatator fossa def: "Fossa located on the neurocranium that is formed from portions of the sphenotic, frontal and pterotic bones." [TAO:wd] comment: Dilatator fossa is present in some characiform fishes. is_a: TAO:0001743 ! fossa created_by: wasiladahdul creation_date: 2009-06-15T03:26:53Z [Term] id: TAO:0002040 name: inter-coracoid joint def: "Joint between the right and left coracoid bones of the pectoral girdle." [TAO:wd] is_a: TAO:0000367 ! joint relationship: OBO_REL:part_of TAO:0000407 ! pectoral girdle created_by: wasiladahdul creation_date: 2009-06-15T03:28:21Z [Term] id: TAO:0002041 name: parapophysis 6 def: "Parapophysis that is the lateral projection from the sixth centrum." [TAO:wd] is_a: TAO:0001362 ! parapophysis relationship: OBO_REL:part_of TAO:0001980 ! vertebra 6 created_by: wasiladahdul creation_date: 2009-06-15T03:30:22Z [Term] id: TAO:0002042 name: parapophysis 5 def: "Parapophysis that is the lateral projection from the fifth centrum." [TAO:wd] is_a: TAO:0001362 ! parapophysis relationship: OBO_REL:part_of TAO:0001732 ! vertebra 5 created_by: wasiladahdul creation_date: 2009-06-15T03:30:47Z [Term] id: TAO:0002043 name: posterior limb of parapophysis 4 def: "Process that arises and projects posterolaterally from parapophysis 4. Posterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] synonym: "posterior branch of parapophysis 4" EXACT [] synonym: "posterior wing of parapophysis 4" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001971 ! parapophysis 4 created_by: wasiladahdul creation_date: 2009-06-15T03:33:35Z [Term] id: TAO:0002044 name: anterior limb of parapophysis 4 def: "Process that arises and projects anterolaterally from parapophysis 4. Anterior limb of parapophysis 4 is bilaterally paired." [TAO:wd] synonym: "anterior branch of parapophysis 4" EXACT [] synonym: "anterior wing of parapophysis 4" EXACT [] synonym: "Mullerian ramus" EXACT [] synonym: "Müllerian ramus" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001971 ! parapophysis 4 created_by: wasiladahdul creation_date: 2009-06-15T03:35:34Z [Term] id: TAO:0002045 name: foramen magnum def: "Foramen in the occipital region of neurocranium to allow passage of spinal cord." [TAO:wd] is_a: TAO:0001736 ! foramen relationship: OBO_REL:part_of TAO:0001414 ! occipital region created_by: wasiladahdul creation_date: 2009-06-16T09:58:34Z [Term] id: TAO:0002046 name: adult def: "Whole organism that is fully grown or sexually mature." [TAO:wd] synonym: "adult organism" EXACT [] is_a: TAO:0001094 ! body created_by: wasiladahdul creation_date: 2009-06-16T10:42:24Z [Term] id: TAO:0002047 name: juvenile def: "Whole organism that is not fully grown or sexually mature." [TAO:wd] synonym: "juvenile organism" EXACT [] is_a: TAO:0001094 ! body created_by: wasiladahdul creation_date: 2009-06-16T10:42:54Z [Term] id: TAO:0002048 name: larva def: "Whole organism that is premetamorphic or a very immature individual." [TAO:wd] synonym: "larval organism" EXACT [] is_a: TAO:0001094 ! body created_by: wasiladahdul creation_date: 2009-06-16T10:43:27Z [Term] id: TAO:0002049 name: alarm substance cell def: "Epithelial cell that produces a chemical that triggers antipredator behavior." [TAO:wd] is_a: TAO:0009000 ! cell created_by: wasiladahdul creation_date: 2009-06-16T10:44:53Z [Term] id: TAO:0002050 name: Schreckstoff relationship: OBO_REL:part_of TAO:0002049 ! alarm substance cell created_by: wasiladahdul creation_date: 2009-06-16T10:45:43Z [Term] id: TAO:0002051 name: circuli def: "Fine ridges on surface of scale, often parallel to the circumference of scale." [TAO:wd] relationship: OBO_REL:part_of TAO:0000277 ! scale created_by: wasiladahdul creation_date: 2009-06-16T11:01:53Z [Term] id: TAO:0002052 name: prootic depression def: "Shallow area that exists on the prootic." [TAO:wd] is_a: TAO:0001668 ! anatomical space created_by: wasiladahdul creation_date: 2009-06-16T11:04:24Z [Term] id: TAO:0002053 name: bony plate def: "Dermal bone that is located on or subjacent to the surface anywhere on the body and that is not part of the general complement of scales, dermal bone of the dermatocranium, postcranial axial skeleton or paired fin skeleton. Bony plate may exist singly, or as unpaired or paired clusters or series." [TAO:wd] synonym: "armor" EXACT [] synonym: "armor plate" EXACT [] synonym: "osteoderms" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton relationship: OBO_REL:part_of TAO:0000368 ! integument relationship: OBO_REL:part_of TAO:0002096 ! bony plate series created_by: wasiladahdul creation_date: 2009-06-16T02:20:50Z [Term] id: TAO:0002054 name: vertebra 5-vertebra 6 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-16T02:23:21Z [Term] id: TAO:0002055 name: vertebra 6 - vertebra 7 joint def: "Joint between the centra, and sometimes the neural arches or parapophyses of vertebra 6 and vertebra 7." [TAO:wd] is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-16T02:23:40Z [Term] id: TAO:0002056 name: hypural 6 is_a: TAO:0000364 ! hypural created_by: wasiladahdul creation_date: 2009-06-16T02:28:13Z [Term] id: TAO:0002057 name: gill opening def: "Anatomical space that is the external opening of a gill slit connecting the pharyngeal cavity to the exterior. Gill opening is usually paired and located on the lateral or ventral surfaces of the head." [TAO:wd] comment: In teleosts, there is typically a single gill opening posterior to the operculum. synonym: "branchial aperture" EXACT [] synonym: "branchial opening" EXACT [] synonym: "gill aperture" EXACT [] synonym: "opercular opening" EXACT [] is_a: TAO:0001668 ! anatomical space relationship: OBO_REL:part_of TAO:0000056 ! pharynx created_by: wasiladahdul creation_date: 2009-06-16T02:38:46Z [Term] id: TAO:0002058 name: Weberian complex centrum def: "Centrum that is the fusion of centra 2-4." [TAO:wd] is_a: TAO:0000126 ! centrum created_by: wasiladahdul creation_date: 2009-06-17T10:02:18Z [Term] id: TAO:0002059 name: posttemporal-parietal joint is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2009-06-17T10:03:08Z [Term] id: TAO:0002060 name: lower lip def: "Lip that covers the lower portion of the mouth." [TAO:wd] is_a: TAO:0007006 ! lip created_by: wasiladahdul creation_date: 2009-06-17T10:03:47Z [Term] id: TAO:0002061 name: predorsal vertebra def: "Vertebra that is positioned between the vertebra immediately anterior to the first dorsal-fin pterygiophore to the anteriormost vertebra." [TAO:wd] is_a: TAO:0001189 ! vertebra created_by: wasiladahdul creation_date: 2009-06-17T10:05:09Z [Term] id: TAO:0002062 name: branched caudal fin ray def: "Caudal fin lepidotrichium that is distally branched." [TAO:wd] is_a: TAO:0001550 ! caudal fin lepidotrichium created_by: wasiladahdul creation_date: 2009-06-17T10:06:31Z [Term] id: TAO:0002063 name: nuchal plate series def: "Anatomical cluster that consists of more than one type of nuchal plate in an individual." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-07-13T03:40:00Z [Term] id: TAO:0002064 name: uroneural 1 def: "Uroneural that is the anteriormost element of the uroneural series." [TAO:wd] is_a: TAO:0000602 ! uroneural created_by: wasiladahdul creation_date: 2009-06-17T10:39:14Z [Term] id: TAO:0002065 name: ural centrum 1 def: "A vertebral centrum that is immediately posterior to preural vertebra 1. Ural centrum 1 is an unpaired median bone." [TAO:GA_TG, TAO:wd] comment: Ural centrum 1 (polyural terminology) may articulate or fuse with its neural arch dorsally or the neural arch may be absent and with hypural 1 ventrally. Ural centrum 1 may be defined also as the first ural centrum bearing hypurals 1 and 2 (diural terminology). is_a: TAO:0002085 ! ural centrum relationship: OBO_REL:part_of TAO:0002163 ! ural vertebra 1 created_by: wasiladahdul creation_date: 2009-06-17T10:40:32Z [Term] id: TAO:0002066 name: auditory fenestra def: "Opening in the neurocranium to allow communication between the swimbladder and the inner ear." [TAO:wd] is_a: TAO:0001736 ! foramen created_by: wasiladahdul creation_date: 2009-06-17T10:42:41Z [Term] id: TAO:0002067 name: upper hypural set def: "Anatomical cluster including hypural 3 and more dorsal hypurals that supports the dorsal series of principal caudal lepidotrichia or rays. The upper hypural set articulates or fuses to ural centra 3, 4 or 5 (polyural terminology) or ural centrum 2 (diural terminology) depending on the teleost subgroup. The upper hypural set is composed of unpaired median bones." [TAO:GA_TG, TAO:wd] comment: The number of hypurals included in the upper hypural set differs among teleostean subgroups. In basal teleosts this may include hypurals 3 to 9 or 10, whereas in more advanced groups this many include hypurals 3 to 5 or even less. synonym: "upper hypurals" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T10:57:49Z [Term] id: TAO:0002068 name: lower hypural set def: "Anatomical cluster including hypurals 1 and 2 that supports part of the ventral principal caudal lepidotrichia or rays and that separates from the dorsal hypural set through the hypural diastema. The lower hypural set articulates or fuses to ural centra 1 and 2 (polyural terminology) or ural centrum 1 (diural terminology) depending on the teleost subgroup. The lower hypural set is composed of unpaired median bones." [TAO:GA_TG, TAO:wd] synonym: "lower hypurals" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T11:00:45Z [Term] id: TAO:0002069 name: distal cartilage of posterior process of basipterygium def: "Process that is cartilaginous and arises from the distal margin or tip of posterior process of basipterygium and projects posteriorly." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001539 ! basipterygium cartilage relationship: OBO_REL:part_of TAO:0001734 ! posterior process of basipterygium created_by: wasiladahdul creation_date: 2009-06-17T11:10:41Z [Term] id: TAO:0002070 name: internal anterior process of basipterygium def: "Process that is bony and arises from anteromedial corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] synonym: "internal anterior arm of basipterygium" EXACT [] synonym: "internal arm of the basipterygium" EXACT [] synonym: "mesial anterior arm of basipterygium" EXACT [] synonym: "mesial anterior process of basipterygium" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium created_by: wasiladahdul creation_date: 2009-06-17T11:12:11Z [Term] id: TAO:0002071 name: distal cartilage of internal anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of internal anterior process of basipterygium." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium relationship: OBO_REL:part_of TAO:0001539 ! basipterygium cartilage created_by: wasiladahdul creation_date: 2009-06-17T11:14:45Z [Term] id: TAO:0002072 name: middle anterior process of basipterygium def: "Process that is bony and arises from anterior margin of basipterygium between internal anterior process of basipterygium and external anterior process of basipterygium. Middle anterior process of basipterygium projects anteriorly or anteromedially." [TAO:wd] synonym: "middle anterior arm of basipterygium" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium created_by: wasiladahdul creation_date: 2009-06-17T11:17:28Z [Term] id: TAO:0002073 name: distal cartilage of middle anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of middle anterior process of basipterygium." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium relationship: OBO_REL:part_of TAO:0001539 ! basipterygium cartilage created_by: wasiladahdul creation_date: 2009-06-17T11:19:45Z [Term] id: TAO:0002074 name: external anterior process of basipterygium def: "Process that is bony and arises from anterolateral corner of basipterygium and projects anteriorly or anteromedially." [TAO:wd] synonym: "external anterior arm of basipterygium" EXACT [] synonym: "external arm of basipterygium" EXACT [] synonym: "lateral anterior process of basipterygium" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium created_by: wasiladahdul creation_date: 2009-06-17T11:21:03Z [Term] id: TAO:0002075 name: distal cartilage of external anterior process of basipterygium def: "Process that is cartilaginous and arises from the distal tip of external anterior process of basipterygium." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium relationship: OBO_REL:part_of TAO:0001539 ! basipterygium cartilage created_by: wasiladahdul creation_date: 2009-06-17T11:27:46Z [Term] id: TAO:0002076 name: lateral process of basipterygium def: "Process that is bony and arises from lateral margin of basipterygium lateral to pelvic fin lepidotrichium 1 and projects laterally or anterolaterally." [TAO:wd] synonym: "posterolateral process of basipterygium" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000623 ! basipterygium created_by: wasiladahdul creation_date: 2009-06-17T11:31:13Z [Term] id: TAO:0002077 name: lateropterygium def: "Bone that is attached or adjacent to lateral margin of basipterygium and anterior to pelvic fin lepidotrichium 1." [TAO:wd] is_a: TAO:0001514 ! bone relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T11:32:44Z [Term] id: TAO:0002078 name: hypural plate def: "Perichondrally ossified bone that results from the fusion of two or more hypurals and support a variable number of principal caudal lepidotrichia. The hypural plate is an unpaired median bone." [TAO:GA_TG] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T02:54:02Z [Term] id: TAO:0002079 name: leptocephalous larva def: "Larval stage in some teleosts before metomorphosis." [TAO:wd] is_a: TAO:0002048 ! larva created_by: wasiladahdul creation_date: 2009-06-17T07:17:25Z [Term] id: TAO:0002080 name: spina occipitalis def: "Process that is a ventral projection from the supraoccipital that extends between the exoccipitals to the dorsal margin of the foramen magnum." [TAO:wd] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000595 ! supraoccipital created_by: wasiladahdul creation_date: 2009-06-17T07:35:39Z [Term] id: TAO:0002081 name: stegural is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:34:32Z [Term] id: TAO:0002082 name: basal fulcrum def: "Bone that precedes the base of the median fins or of both the paired and median fins. Basal fulcra are large, laterally expanded, and may be paired or unpaired scale-like structures." [TAO:GA_TG] comment: Basal fulcra may be lanceolate, leaf-like or arrow-like in shape. The series of basal fulcra may be formed by unpaired plus paired elements depending on the fish group. Most teleosts lack basal fulcra. For additional information on basal fulcra see Arratia (2008, 2009). synonym: "basal fulcra" EXACT PLURAL [] is_a: TAO:0001514 ! bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:40:25Z [Term] id: TAO:0002083 name: fringing fulcrum synonym: "fringing fulcra" EXACT PLURAL [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:41:04Z [Term] id: TAO:0002084 name: pleurostyle def: "Postero-dorsal process of preural vertebra 1 or postero-dorsal process of the compound terminal centrum. The pleurostyle is a paired membrane bone." [TAO:GA_TG] comment: The pleurostyle is currently interpreted as a modified pair of uroneurals that fuse to preural vertebra 1 or compound centrum early in ontogeny. However, it is unclear which pair of the series of uroneurals forms the pleurostyle in different teleost subgroups. synonym: "uroneural" RELATED [] synonym: "uroneural 1" RELATED [] is_a: TAO:0000602 ! uroneural relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:44:04Z [Term] id: TAO:0002085 name: ural centrum def: "A vertebral centrum that is posterior to preural vertebra 1 and consequently the most posterior vertebral centra. Ural centrum is a unpaired median bone." [TAO:GA_TG] comment: A ural centrum may be formed by a chordacentrum alone, or chordacentrum plus autocentrum or autocentrum alone depending on the teleost subgroup. An ural centrum may articulate or fuse with its neural arch dorsally or the neural arch my be absent and with a hypural ventrally. The term ural centrum was proposed by Nybelin (1963). For the composition and formation of caudal vertebrae and centra see Arratia (1991), Arratia and Schultze (1992) and Arratia et al. (2001). is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:45:33Z [Term] id: TAO:0002086 name: pelvic axillary process is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0001387 ! pelvic fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:53:09Z [Term] id: TAO:0002087 name: pectoral axillary process def: "Pectoral axillary process is an elongate structure formed by one or more additional postcleithra or modified scales or a combination of both, that is firmly attached to a skin fold above the articular condyle of the uppermost pectoral fin ray or lepidotrichium 1." [TAO:GA_TG, TAO:wd] comment: For additional information see Arratia (1997). is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000943 ! pectoral fin skeleton created_by: wasiladahdul creation_date: 2009-06-17T09:53:22Z [Term] id: TAO:0002088 name: interhaemal bone def: "A small bone articulating distally with the haemal arch or a short haemal spine." [TAO:wd] comment: Definition from Arratia 1999. is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-06-17T10:01:55Z [Term] id: TAO:0002089 name: gular plate def: "Dermal bone located on the ventral surface of the skull and positioned between the two rami of the lower jaw. Anteriorly the gular attaches to the symphysis of the lower jaw through fibrous connective tissue. The gular is an unpaired median bone." [TAO:ga_tg, TAO:wd] comment: A gular plate is absent in most extant teleosts. synonym: "median gular" EXACT [] is_a: TAO:0001590 ! dermal bone relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium created_by: wasiladahdul creation_date: 2009-06-17T10:05:04Z [Term] id: TAO:0002090 name: pro-otic fossa synonym: "prootic fossa" EXACT [] is_a: TAO:0001743 ! fossa created_by: wasiladahdul creation_date: 2009-06-17T10:06:45Z [Term] id: TAO:0002091 name: median caudal cartilage def: "Cartilage associated with hypurals." [TAO:wd] comment: Definition from Johnson and Patterson 1993. is_a: TAO:0001457 ! postcranial axial cartilage created_by: wasiladahdul creation_date: 2009-06-17T10:08:25Z [Term] id: TAO:0002092 name: rostral cartilage def: "Median chondrified cartilage bound to premaxillary ascending process by a rostro-premaxilla ligament." [TAO:wd] is_a: TAO:0001461 ! chondrocranium cartilage created_by: wasiladahdul creation_date: 2009-06-17T10:11:16Z [Term] id: TAO:0002093 name: palate def: "Anatomical cluster that is the upper roof of the mouth that is underlain by bones such as the parasphenoid, vomer, metapterygoid, orbitosphenoid." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000737 ! cranium created_by: wasiladahdul creation_date: 2009-06-17T10:15:22Z [Term] id: TAO:0002094 name: dorsal fin pterygiophore 1 def: "Dorsal fin pterygiophore that is the anteriormost pterygiophore of the dorsal fin." [TAO:wd] is_a: TAO:0001419 ! dorsal fin pterygiophore created_by: wasiladahdul creation_date: 2009-06-17T11:15:48Z [Term] id: TAO:0002095 name: third posttemporal fossa comment: Present in some characiforms. is_a: TAO:0001753 ! posttemporal fossa created_by: wasiladahdul creation_date: 2009-06-17T11:34:05Z [Term] id: TAO:0002096 name: bony plate series def: "Anatomical cluster that consists of more than one bony plate in an individual." [TAO:wd] synonym: "armor plate series" EXACT [] is_a: TAO:0001478 ! anatomical cluster created_by: wasiladahdul creation_date: 2009-07-13T03:46:11Z [Term] id: TAO:0002097 name: sensory canal pore series def: "Anatomical cluster that consists of more than one sensory canal pore." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster created_by: wasiladahdul creation_date: 2009-07-13T03:49:08Z [Term] id: TAO:0002098 name: hemal spine series is_a: TAO:0001478 ! anatomical cluster created_by: wasiladahdul creation_date: 2009-07-13T03:51:08Z [Term] id: TAO:0002099 name: lateral line scale series def: "Anatomical cluster that consists of more than one lateral line scale." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000034 ! lateral line system created_by: wasiladahdul creation_date: 2009-07-13T03:52:52Z [Term] id: TAO:0002100 name: rib series def: "Anatomical cluster that consists of more than one rib in an individual." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-07-13T04:02:16Z [Term] id: TAO:0002101 name: branchiostegal ray series def: "Anatomical cluster that consists of the branchiostegal rays within an individual." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000863 ! dermatocranium created_by: wasiladahdul creation_date: 2009-07-14T11:09:12Z [Term] id: TAO:0002102 name: epibranchial series def: "Anatomical cluster that consists of the epibranchial elements within an individual." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton created_by: wasiladahdul creation_date: 2009-07-14T03:48:47Z [Term] id: TAO:0002103 name: ceratobranchial series def: "Anatomical cluster that consists of the ceratobranchial elements within an individual." [TAO:wd] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000095 ! gill arch 1-5 skeleton created_by: wasiladahdul creation_date: 2009-07-14T04:28:19Z [Term] id: TAO:0002104 name: ampullary organ def: "Organ that consists of receptor cells located within an epidermal invagination and functions as an electroreceptor." [TAO:wd] synonym: "ampullary electroreceptor organ" EXACT [] is_a: TAO:0000496 ! compound organ created_by: wasiladahdul creation_date: 2009-11-19T11:20:54Z [Term] id: TAO:0002105 name: electrosensory lateral line lobe def: "Anatomical structure located in the hindbrain that receives primary electroreceptor input." [TAO:wd] comment: Definition reference: McNamara, AM., JP Denizot, CD Hopkins. 2005. Comparative Anatomy of the Electrosensory Lateral Line Lobe of Mormyrids: The Mystery of the Missing Map in the Genus Stomatorhinus (Family: Mormyridae). Brain, Behavior and Evolution 65:188-201. synonym: "ELL" EXACT [] is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0000029 ! hindbrain created_by: wasiladahdul creation_date: 2009-11-19T11:26:16Z [Term] id: TAO:0002106 name: eminentia granularis def: "Anatomical structure that is a subdivision of the cerebellum; it is the location of some lateral line nerve synapses." [TAO:wd] comment: Definition based on Albert,2001 [Albert JS. 2001. Species Diversity and Phylogenetic systematics of American Knifefishes (Gymnotiformes, Teleostei). Miscellaneous Publications, Museum of Zoology, University of Michigan no. 190:140 pages.] synonym: "EG" EXACT [] is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0000100 ! cerebellum created_by: wasiladahdul creation_date: 2009-11-19T11:29:10Z [Term] id: TAO:0002107 name: medullary command nucleus def: "Anatomical structure that consists of two neuron types: pacemaker cells and relay cells. The medullary command nucleus commands the timing of the electric organ discharge." [TAO:wd] comment: Definition reference: Moortgat, KT, Bullock, TH, and Sejnowski TJ. 2000. J Neurophysiol 83: 971-983. Precision of the Pacemaker Nucleus in a Weakly Electric Fish: Network Versus Cellular Influences. synonym: "MCN" EXACT [] synonym: "medullary pacemaker nucleus" EXACT [] synonym: "pacemaker nucleus" EXACT [] is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0000008 ! brain created_by: wasiladahdul creation_date: 2009-11-19T11:32:27Z [Term] id: TAO:0002108 name: buccal papilla def: "Papilla that is part of the mouth." [TAO:wd] is_a: TAO:0001995 ! papilla relationship: OBO_REL:part_of TAO:0000547 ! mouth created_by: wasiladahdul creation_date: 2009-11-19T02:18:06Z [Term] id: TAO:0002109 name: uroneural 2 is_a: TAO:0000602 ! uroneural created_by: wasiladahdul creation_date: 2009-11-23T05:01:10Z [Term] id: TAO:0002110 name: metapterygoid-quadrate fenestra is_a: TAO:0001736 ! foramen created_by: wasiladahdul creation_date: 2009-11-23T05:07:02Z [Term] id: TAO:0002111 name: prootic bulla is_a: TAO:0001488 ! multi-tissue structure created_by: wasiladahdul creation_date: 2009-11-24T09:51:33Z [Term] id: TAO:0002112 name: preural 3 vertebra synonym: "preural centrum 3" EXACT [] synonym: "pu3" EXACT [] is_a: TAO:0000734 ! preural vertebra created_by: wasiladahdul creation_date: 2009-11-24T09:54:06Z [Term] id: TAO:0002113 name: cheek def: "Surface structure that includes the scales, skin, and muscles that are located ventral and posterior to the eye." [TAO:wd] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0001114 ! head created_by: wasiladahdul creation_date: 2009-11-24T10:06:42Z [Term] id: TAO:0002114 name: cotylephore def: "Multi-tissue structure that is a transient outgrowth of tissue on skin brooding fish that acts as an attachment site for embryos." [TAO:wd] comment: Definition reference: James Wetzel, John P. Wourms and John Friel 1997.\nComparative morphology of cotylephores in Platystacus and Solenostomus:\nmodifications of the integument for egg attachment in skin-brooding fishes.\nEnvironmental Biology of Fishes. Volume 50, Number 1 / September, 1997.\nPages 13 - 25. is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000632 ! reproductive system created_by: wasiladahdul creation_date: 2009-11-25T10:35:13Z [Term] id: TAO:0002115 name: uroneural 3 is_a: TAO:0000602 ! uroneural created_by: wasiladahdul creation_date: 2009-11-25T10:39:36Z [Term] id: TAO:0002116 name: epibranchial organ is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0000056 ! pharynx created_by: wasiladahdul creation_date: 2009-12-08T11:00:06Z [Term] id: TAO:0002117 name: ovipositor def: "Organ that functions in egg deposition." [TAO:wd] is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0000632 ! reproductive system created_by: wasiladahdul creation_date: 2009-12-08T11:18:35Z [Term] id: TAO:0002118 name: radius synonym: "radii" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000277 ! scale created_by: wasiladahdul creation_date: 2009-12-08T12:44:09Z [Term] id: TAO:0002119 name: focus relationship: OBO_REL:part_of TAO:0000277 ! scale created_by: wasiladahdul creation_date: 2009-12-08T12:45:00Z [Term] id: TAO:0002120 name: orbitosphenoid septum relationship: OBO_REL:part_of TAO:0000253 ! orbitosphenoid created_by: wasiladahdul creation_date: 2009-12-08T01:00:19Z [Term] id: TAO:0002121 name: stomach is_a: TAO:0001490 ! cavitated compound organ relationship: OBO_REL:part_of TAO:0000112 ! gut created_by: wasiladahdul creation_date: 2009-12-09T03:28:01Z [Term] id: TAO:0002122 name: pouch scale def: "Scale that forms part of the posterior border of the caudal-fin organ. Pouch scales are usually hypertrophied." [TAO:wd] comment: Definition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. is_a: TAO:0000277 ! scale relationship: OBO_REL:part_of TAO:0002125 ! caudal-fin organ created_by: wasiladahdul creation_date: 2009-12-09T03:43:17Z [Term] id: TAO:0002123 name: neural arch 5 is_a: TAO:0001066 ! neural arch created_by: wasiladahdul creation_date: 2009-12-16T10:15:58Z [Term] id: TAO:0002124 name: nuptial tubercle def: "Surface structure that is a small protuberance on the surface of the body. Nuptial tubercles primarily function to facilitate contact between individuals for breeding." [TAO:wd] comment: Nuptial tubercles may be keratinized or nonkeratinized. Also may function in territorial defense or stimulation of females in breeding.\n\nDefinition reference: Wiley, M. L. and B. B. Collette. 1970. Breeding tubercles and contact organs in fishes: Their occurrence, structure, and significance. Bull Am Mus Nat Hist 143: 143-216. synonym: "breeding tubercle" EXACT [] synonym: "contact organ" EXACT [] is_a: TAO:0000292 ! surface structure created_by: wasiladahdul creation_date: 2009-12-16T10:48:46Z [Term] id: TAO:0002125 name: caudal-fin organ def: "Organ that consists of a pouch located on the ventral caudal-fin lobe, opening posteriorly, and composed of glandular tissue. The caudal-fin organ presumably functions to secrete pheromones during courtship." [TAO:wd] comment: Definition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. synonym: "caudal fin organ" EXACT [] synonym: "caudal organ" EXACT [] synonym: "caudal sac" EXACT [] synonym: "glandular organ" EXACT [] is_a: TAO:0000496 ! compound organ relationship: OBO_REL:part_of TAO:0001058 ! caudal fin created_by: wasiladahdul creation_date: 2009-12-17T11:27:11Z [Term] id: TAO:0002126 name: caudal-fin ray pump def: "Anatomical cluster that consists of thickened caudal-fin rays modified into a pumping mechanism associated with the caudal-fin organ." [TAO:wd] comment: Caudal fin rays can vary in thickness and form of the pump can vary from a simple open groove to complex chambered structure.\n\nDefinition reference:\nWeitzman SH, Menezes NA. 1998. Relationships of the tribes and genera of\nthe Glandulocaudiinae (Ostariophysi: Characiformes: Characidae), with a\ndescription of a new genus. In: Malabarba LR, Reis RE, Vari RP, Lucena ZMS,\nLucena CAS, editors. Phylogeny and Classification of Neotropical Fishes.\nPorto Alegre: EDIPUCRS. p 171-192. is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0001058 ! caudal fin created_by: wasiladahdul creation_date: 2009-12-17T11:33:06Z [Term] id: TAO:0002127 name: myorhabdoid bone def: "Intermuscular bone that is located in the dorsal and ventral forward flexures of the myoseptum." [TAO:wd] comment: Definition reference:\nPatterson, C., Johnson, G.D. 1995. The intermuscular bones and ligaments of teleostean fishes. Smithosonian Contributions to Zoology 559:1-85. synonym: "myorhabdoi" EXACT PLURAL [] is_a: TAO:0000526 ! intermuscular bone created_by: wasiladahdul creation_date: 2009-12-21T10:55:23Z [Term] id: TAO:0002128 name: cavum sinus imparis synonym: "cavum sinus impar" EXACT [] is_a: TAO:0001668 ! anatomical space created_by: wasiladahdul creation_date: 2009-12-21T05:17:53Z [Term] id: TAO:0002129 name: caudal rod def: "Multi-tissue structure that is a cartilaginous or collagenous bar supporting the caudal appendage." [TAO:wd] comment: Definition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC\nRELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES\n(OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA . Journal\nof Vertebrate Paleontology 27(1):17-25 synonym: "hypural-opisthural rod" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-12-27T02:27:39Z [Term] id: TAO:0002130 name: caudal appendage def: "Multi-tissue structure that is region of the body posterior to the last anal-fin ray." [TAO:wd] comment: Comments: This is a gymnotiform structure. The caudal appendage can include vertebrae, a cartilginous rod, pterygiophores, anal-fin rays, and intermuscular bones.\nDefinition reference: Albert, JS and WL Fink. 2007. PHYLOGENETIC RELATIONSHIPS OF FOSSIL NEOTROPICAL ELECTRIC FISHES (OSTEICHTHYES: GYMNOTIFORMES) FROM THE UPPER MIOCENE OF BOLIVIA. Journal of Vertebrate Paleontology 27(1):17-25. synonym: "caudal filament" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000317 ! postcranial axial skeleton created_by: wasiladahdul creation_date: 2009-12-27T02:31:19Z [Term] id: TAO:0002131 name: horizontal septum def: "Anatomical structure that consists of a sheet of connective tissue attached to the vertebral column and dividing the epaxial and hypaxial musculature." [TAO:wd] is_a: TAO:0000037 ! anatomical structure created_by: wasiladahdul creation_date: 2009-12-27T03:43:24Z [Term] id: TAO:0002132 name: hypural 7 is_a: TAO:0000364 ! hypural created_by: wasiladahdul creation_date: 2010-02-04T04:04:32Z [Term] id: TAO:0002133 name: dorsal organ def: "Surface structure that is a midsaggital strap of flattened ectodermal tissue extending along the posterodorsal midline." [TAO:wd] comment: Dorsal organ is a structure found in apteronotid gymnotiform fishes. Definition reference:\n\nAlbert, JS and WL Fink. 2007. Phylogenetic relationships of fossil neotropical electric fish (Osteichthyes: Gymnotiformes) from the Upper Miocene of Bolivia. Journal of Vertebrate Paleontology 27:17-25. is_a: TAO:0000292 ! surface structure created_by: wasiladahdul creation_date: 2010-02-05T10:47:35Z [Term] id: TAO:0002134 name: adipose tissue def: "Connective tissue in which fat is stored." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue created_by: wasiladahdul creation_date: 2010-04-06T01:43:45Z [Term] id: TAO:0002135 name: abductor muscle def: "A muscle that moves a body part away from the sagittal plane of the body." [ZFA:curator] is_a: TAO:0001953 ! cranial muscle created_by: wasiladahdul creation_date: 2010-04-29T11:40:33Z [Term] id: TAO:0002136 name: adductor muscle def: "A muscle that brings a body part closer to the sagittal plane of the body." [ZFA:curator] is_a: TAO:0001953 ! cranial muscle created_by: wasiladahdul creation_date: 2010-04-29T11:41:03Z [Term] id: TAO:0002137 name: blood vessel is_a: TAO:0001488 ! multi-tissue structure created_by: wasiladahdul creation_date: 2010-04-29T11:42:26Z [Term] id: TAO:0002138 name: arteriole def: "Multi-tissue structure part of the blood vasculature, feeds into capillaries. Arterioles carry blood away from the heart." [ZFIN:curator] is_a: TAO:0002137 ! blood vessel created_by: wasiladahdul creation_date: 2010-04-29T11:43:09Z [Term] id: TAO:0002139 name: afferent arteriole is_a: TAO:0002138 ! arteriole created_by: wasiladahdul creation_date: 2010-04-29T11:43:31Z [Term] id: TAO:0002140 name: efferent arteriole is_a: TAO:0002138 ! arteriole created_by: wasiladahdul creation_date: 2010-04-29T11:44:14Z [Term] id: TAO:0002141 name: annular ligament def: "Ligament that is in the eye and is located at the angle between the cornea and the iris." [ZFA:curator] is_a: TAO:0001682 ! ligament created_by: wasiladahdul creation_date: 2010-04-29T01:26:00Z [Term] id: TAO:0002142 name: white matter def: "Multi-tissue structure comprised largely of myelinated axons." [ZFIN:curator] is_a: TAO:0001488 ! multi-tissue structure created_by: wasiladahdul creation_date: 2010-04-29T01:29:43Z [Term] id: TAO:0002143 name: CNS white matter is_a: TAO:0002142 ! white matter created_by: wasiladahdul creation_date: 2010-04-29T01:31:20Z [Term] id: TAO:0002144 name: anterior catecholaminergic tract def: "CNS white matter, an axonal tract between ventral diencephalon and ventral telencephalon. At 3 d, the anterior catecholaminergic tract includes noradrenergic projections from the hindbrain and dopaminergic projections from ventral dopaminergic neurons. During later development, other catecholaminergic projections may also contribute to the anterior catecholaminergic tract." [ZFIN:ZDB-PUB-091221-28] is_a: TAO:0002143 ! CNS white matter created_by: wasiladahdul creation_date: 2010-04-29T01:32:53Z [Term] id: TAO:0002145 name: anterior swim bladder bud def: "Portion of tissue that forms from the swim bladder epithelium at the anterior end of the swim bladder." [ZFIN:090511-18] is_a: TAO:0001477 ! portion of tissue created_by: wasiladahdul creation_date: 2010-04-29T01:43:21Z [Term] id: TAO:0002146 name: apical ectodermal ridge def: "Proliferative region that is part of the developing fin fold or fin." [ZFIN:curator] is_a: TAO:0000098 ! proliferative region created_by: wasiladahdul creation_date: 2010-04-29T01:58:41Z [Term] id: TAO:0002147 name: arrector muscle is_a: TAO:0005145 ! muscle created_by: wasiladahdul creation_date: 2010-04-29T02:34:21Z [Term] id: TAO:0002148 name: xanthoblast def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a xanthophore" [CL:curator] xref: CL:0005002 is_a: TAO:0009000 ! cell created_by: wasiladahdul creation_date: 2010-04-29T02:42:11Z [Term] id: TAO:0002149 name: vertebra 9 def: "Vertebra that is posteriorly adjacent to vertebra 8." [TAO:curator] is_a: TAO:0001189 ! vertebra created_by: wasiladahdul creation_date: 2010-04-29T02:46:14Z [Term] id: TAO:0002150 name: vertebra 10 def: "Vertebra that is posteriorly adjacent to vertebra 9." [TAO:curator] is_a: TAO:0001189 ! vertebra created_by: wasiladahdul creation_date: 2010-04-29T02:46:30Z [Term] id: TAO:0002151 name: vertebra 11 def: "Vertebra that is posteriorly adjacent to vertebra 10." [TAO:wd] is_a: TAO:0001189 ! vertebra created_by: wasiladahdul creation_date: 2010-04-29T02:47:16Z [Term] id: TAO:0002152 name: vertebra 12 def: "Vertebra that is posteriorly adjacent to vertebra 11. May have hemal arch and rib." [TAO:wd] is_a: TAO:0001189 ! vertebra created_by: wasiladahdul creation_date: 2010-04-29T02:47:30Z [Term] id: TAO:0002153 name: nephron def: "Functional unit of the kidney that filters waste." [ZFIN:curator] is_a: TAO:0001478 ! anatomical cluster created_by: wasiladahdul creation_date: 2010-04-29T02:59:29Z [Term] id: TAO:0002154 name: opercular cavity def: "Anatomical space which is located beneath the operculum and external to the gills." [ZFIN:curator] is_a: TAO:0001668 ! anatomical space created_by: wasiladahdul creation_date: 2010-04-29T03:02:38Z [Term] id: TAO:0002155 name: Bowman's layer def: "Acellular anatomical structure that is the zone of collagen fibers adjacent the basement membrane of the corneal epithelium." [ZFIN:ZDB-PUB-061010-3] is_a: TAO:0000382 ! acellular anatomical structure created_by: wasiladahdul creation_date: 2010-04-29T03:05:49Z [Term] id: TAO:0002156 name: brainstem def: "Multi-tissue structure that has as its parts the medulla oblongata of the hindbrain and the tegmentum of the midbrain." [ISBN:3764351209] is_a: TAO:0001488 ! multi-tissue structure created_by: wasiladahdul creation_date: 2010-04-29T03:08:56Z [Term] id: TAO:0002157 name: Descemet's membrane def: "Portion of tissue that is the innermost layer of the cornea and consists of a monolayer of ploygonal cells." [ZFIN:ZDB-PUB-061010-3] is_a: TAO:0001477 ! portion of tissue created_by: wasiladahdul creation_date: 2010-04-29T03:16:46Z [Term] id: TAO:0002158 name: palatine def: "Compound endochdondral and dermal bone that results from the fusion of the dermal dermopalatine and the endochondral autopalatine and forms the antero-lateral region of the palate. Commonly, it articulates with the maxilla antero-laterally and with the ethmoidal region medially. The palatine is paired." [TAO:GA_TG] comment: Depending on the teleostean group, the palatine may articulate with the entopterygoid posteriorly. The term palatine is usually used for the more advanced teleosts with a large autopalatine and a small dermopalatine represented by a few teeth. is_a: TAO:0001591 ! endochondral bone relationship: develops_from TAO:0000015 ! dermopalatine relationship: develops_from TAO:0000620 ! autopalatine relationship: OBO_REL:part_of TAO:0001272 ! palatoquadrate arch created_by: wasiladahdul creation_date: 2010-05-05T03:59:56Z [Term] id: TAO:0002159 name: caudal basal fulcrum def: "Basal fulcrum that precedes a caudal fin lobe." [TAO:GA_TG] comment: Caudal basal fulcra precede the bases of both lobes of the caudal fin or only the dorsal one in basal teleosts. Most teleosts lack basal fulcra on the caudal fin. For additional information on basal fulcra see Arratia (2008, 2009). synonym: "caudal basal fulcra" EXACT PLURAL [] is_a: TAO:0002082 ! basal fulcrum relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2010-05-07T10:26:23Z [Term] id: TAO:0002160 name: ural centrum 3 def: "A vertebral centrum that is located immediately posterior to ural centrum 2 (polyural terminology). Ural centrum 3 articulates with hypural 3 ventrally. Ural centrum 3 is an unpaired median bone." [TAO:GA_TG] comment: Ural centrum 3 lacks a neural arch in teleosts. is_a: TAO:0002085 ! ural centrum created_by: wasiladahdul creation_date: 2010-05-11T10:08:33Z [Term] id: TAO:0002161 name: ural centrum 4 def: "A vertebral centrum that is located immediately posterior to ural centrum 3 (polyural terminology) and may fuse to ural centrum 3 early in ontogeny. Ural centrum 4 articulates with hypural 4 ventrally. Ural centrum 4 is an unpaired median bone." [TAO:GA_TG] comment: Ural centrum 4 lacks a neural arch in teleosts. is_a: TAO:0002085 ! ural centrum created_by: wasiladahdul creation_date: 2010-05-11T10:08:46Z [Term] id: TAO:0002162 name: ural vertebra def: "Vertebra that is incomplete or rudimentary and may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent. Ural vertebrae are one of the last bony elements of the vertebral column, usually smaller than the preural centra. Ural vertebrae are numbered beginning from anterior (1) to posterior (2, 3, 4, etc.). Ural vertebra is an unpaired median bone." [TAO:GA_TG] is_a: TAO:0000326 ! caudal vertebra relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2010-05-11T10:24:32Z [Term] id: TAO:0002163 name: ural vertebra 1 def: "Ural vertebra that is located directly posterior to preural centrum 1. It may bear a rudimentary neural arch and sometimes a rudimentary spine or the neural arch and spine are completely absent and it may articulate or fuse with hypural 1 (polyural terminology). Ural vertebra 1 is an unpaired median bone." [TAO:GA_TG] comment: Ural vertebrae 1 may be defined also as the first ural vertebrae bearing hypurals 1 and 2 (diural terminology). is_a: TAO:0002162 ! ural vertebra created_by: wasiladahdul creation_date: 2010-05-11T10:24:56Z [Term] id: TAO:0002164 name: caudal principal ray set def: "Anatomical cluster including all segmented-and-branched rays plus one unbranched but segmented ray located at the leading margin in each lobe of the caudal fin (Hubbs and Lagler, 1947) and that associates with endoskeletal elements such as hypurals and hemal spines of preural centra 1 and 2 (Arratia, 2008). Caudal principal rays are counted from the dorsalmost one ventrally. Caudal principal rays are unpaired median bones." [TAO:GA_TG] comment: In basal teleosts the number of caudal principal rays is about 20. A decreasing of the number of the branched-and segmented rays is observed in more advanced teleosts (see Schultze and Arratia, 1989; Arratia, 1991, 2008). The presence of marginal principal caudal rays as long or longer than the branched-and-segmented principal rays is a synapomorphy of teleosts (Arratia, 2008, 2009). synonym: "branched caudal rays" EXACT [] synonym: "caudal principal lepidotrichia" EXACT PLURAL [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2010-05-11T01:41:56Z [Term] id: TAO:0002165 name: caudal procurrent ray set def: "An anatomical cluster of short rays, shorter than the principal ones, which form the anterior dorsal and ventral series of lepidotrichia of the caudal fin that may be associated with neural spines, epurals and uroneurals (dorsal series) and haemal spines of preural vertebrae (ventral series) (Arratia, 2008). The anteriormost procurrent rays are commonly unsegmented, but the posteriormost ones are usually segmented. The procurrent rays are numbered from caudal to rostral direction. The caudal procurrent ray series is an unpaired median series." [TAO:Arratia_2008, TAO:GA_TG] synonym: "caudal precurrent rays" EXACT [] synonym: "caudal spiny rays" EXACT [] synonym: "rudimentary rays" EXACT [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000862 ! caudal fin skeleton created_by: wasiladahdul creation_date: 2010-05-11T01:46:26Z [Term] id: TAO:0002166 name: pseudourostyle def: "An elongate lateral process ventrally placed to the proximal region of the pleurostyle. The pseudourostyle is paired." [TAO:GA_TG] comment: The pseudourostyle occurs only in certain teleost subgroups. It may be well developed in certain characiforms. is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0002084 ! pleurostyle created_by: wasiladahdul creation_date: 2010-05-11T02:03:29Z [Term] id: TAO:0002167 name: stegural def: "Modified neural arch, probably of ural centrum 4, formed by a bony base that may extend along the dorso-lateral surfaces of ural centra and preural centra 1 or 2 and by a well-developed antero-dorsal membranous projection that extends lateral to the base of epural(s) and anterior toward the neural arches and/or spines of preural centra 1 or 2 (Arratia and Schultze, 1992). The stegural is a paired bone." [TAO:GA_TG] comment: It is unclear if the structure named stegural is homologous among teleost subgroups. synonym: "uroneural" RELATED [] is_a: TAO:0000602 ! uroneural created_by: wasiladahdul creation_date: 2010-05-11T02:04:55Z [Term] id: TAO:0002168 name: preural centrum 1 + ural centrum 1 + ural centrum 2 def: "Urostyle that is the result of fusion of preural centrum 1 with ural centra 1 and 2." [TAO:wd] is_a: TAO:0000158 ! urostyle created_by: wasiladahdul creation_date: 2010-05-12T01:23:26Z [Term] id: TAO:0002169 name: atrial endocardium is_a: TAO:0001320 ! endocardium relationship: OBO_REL:part_of TAO:0000471 ! atrium [Term] id: TAO:0002170 name: atrioventricular canal endocardium is_a: TAO:0001320 ! endocardium relationship: OBO_REL:part_of TAO:0001315 ! atrioventricular canal [Term] id: TAO:0002171 name: vascular endothelium is_a: TAO:0001498 ! simple squamous epithelium [Term] id: TAO:0002172 name: branchial mesenchyme is_a: TAO:0000113 ! head mesenchyme [Term] id: TAO:0002173 name: cardiac neural crest is_a: TAO:0000045 ! neural crest [Term] id: TAO:0002174 name: octaval nerve motor nucleus is_a: TAO:0002177 ! hindbrain nucleus relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0002175 name: rostral octaval nerve motor nucleus synonym: "ROLE" EXACT [] synonym: "rostral cranial nerve VIII motor nucleus" EXACT [] is_a: TAO:0002174 ! octaval nerve motor nucleus [Term] id: TAO:0002176 name: caudal octaval nerve motor nucleus is_a: TAO:0002174 ! octaval nerve motor nucleus [Term] id: TAO:0002177 name: hindbrain nucleus is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0002178 name: telencephalic nucleus is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0002179 name: peripheral nucleus of ventral telencephalon def: "Telencephalic nucleus which has migrated away from the ependyma and consists of the central, lateral nuclei and the dorsal and ventral entopeduncular nuclei. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] is_a: TAO:0002178 ! telencephalic nucleus relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0002180 name: central nucleus of ventral telencephalon def: "Peripheral nucleus of the ventral telencephalon which is located immediately lateral to the dorsal nucleus of the ventral telencephalon. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus centralis" EXACT [] is_a: TAO:0002179 ! peripheral nucleus of ventral telencephalon [Term] id: TAO:0002181 name: cephalic flexure def: "Ventral bend in the brain occurring caudal to the adenohypophyseal placode." [ZFIN:curator] synonym: "ventral flexure" EXACT [] relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0002182 name: cerebellar granule cell def: "Granule cell that is part of the cerebellum." [CL:curator] xref: CL:0000989 is_a: TAO:0009070 ! granule cell relationship: OBO_REL:part_of TAO:0000358 ! granular layer corpus cerebelli relationship: OBO_REL:part_of TAO:0000766 ! granular layer valvula cerebelli [Term] id: TAO:0002183 name: cerebellar white matter def: "CNS white matter that is part of the cerebellum." [ZFIN:curator] is_a: TAO:0000145 ! CNS tracts and commissures relationship: OBO_REL:part_of TAO:0000100 ! cerebellum [Term] id: TAO:0002184 name: cerebral spinal fluid def: "Portion of organism substance that is a clear fluid that occupies the subarachnoid space and the ventricular system around and inside the brain." [ZFIN:curator] synonym: "CSF" EXACT [] is_a: TAO:0001487 ! portion of organism substance [Term] id: TAO:0002185 name: climbing fiber def: "Portion of tissue that consists of afferent axons from the inferior olive and synapsing with Purkinje cells within the molecular layer of the valvula cerebelli and corpus cerebelli." [ISBN:3764351209, ZFIN:ZDB-PUB-090422-9] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000188 ! corpus cerebelli relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0002186 name: corneal endothelium is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0000640 ! cornea [Term] id: TAO:0002187 name: corneal epithelium def: "Portion of tissue comprised of four to six layers of nonkeratinized, stratified squamous cells and represents approximately 60% of the thickness of the cornea." [ZFIN:ZDB-PUB-061010-3] is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0000640 ! cornea [Term] id: TAO:0002188 name: corneal primordium def: "Portion of tissue that is part of the eye and gives rise to the mature, fully layered cornea." [ZFIN:ZDB-PUB-061010-3] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0002189 name: corneal stroma def: "Portion of tissue that is located basal to Bowman's layer and distal to Descemet's membrane and is comprised largely of connective tissue." [ZFIN:ZDB-PUB-061010-3] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000640 ! cornea [Term] id: TAO:0002190 name: cranial nerve root is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000641 ! cranial nerve [Term] id: TAO:0002191 name: diencephalic nucleus is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0002192 name: dorsolateral motor nucleus of vagal nerve def: "Motor nucleus of vagal nerve that is located within the dorsolateral portion of rhomobomere 8." [ZFIN:ZDB-PUB-090417-11] synonym: "dlX" EXACT [] is_a: TAO:0000297 ! vagal lobe [Term] id: TAO:0002193 name: dorsolateral septum def: "Portion of tissue that grows in from the dorsolateral wall of the otic vesicle, forming a dorsolateral partition between the developing anterior and posterior semicircular canals." [ZFIN:ZDB-PUB-961014-383] synonym: "dorsal bar" RELATED [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000262 ! posterior semicircular canal relationship: OBO_REL:part_of TAO:0000314 ! anterior semicircular canal [Term] id: TAO:0002194 name: endolymphatic duct def: "Duct that is part of the inner ear and connects to the semicircular canals ending in a pouch." [http:en.wikipedia.org/wiki/Endolymphatic_duct] is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0002195 name: epidermal placode def: "Portion of tissue that is a thickening and reshaping of the epidermal basal stratum cells beneath which fibroblasts accumulate to form the scale primordium." [ZFIN:ZDB-PUB-081008-12] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0001180 ! epidermal basal stratum [Term] id: TAO:0002196 name: floor plate midbrain region def: "Floor plate that is part of the midbrain." [ZFIN:curator] is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0002197 name: grey matter def: "Multi-tissue comprised of neurons, dendrites, axon terminals, glial cells, and capillaries." [ZFIN:curator] synonym: "gray mater" RELATED [] synonym: "gray matter" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0002198 name: head muscle def: "Muscle which is part of the head." [ZFIN:curator] synonym: "cephalic muscle" EXACT [] is_a: TAO:0005145 ! muscle relationship: OBO_REL:part_of TAO:0000328 ! cephalic musculature [Term] id: TAO:0002199 name: hindbrain commissure def: "CNS white matter that crosses the midline within the hindbrain." [ZFIN:ZDB-PUB-090417-11] is_a: TAO:0000145 ! CNS tracts and commissures relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0002200 name: hypobranchial muscle def: "Head muscle that originates on the anterior region of the cleithrum and inserts on the urohyal. The hypobranchial forms initially as left and right parts that later fuse together forming a cone shape." [ZFIN:ZDB-PUB-080306-33] synonym: "sternohyoideus" EXACT [] is_a: TAO:0002198 ! head muscle [Term] id: TAO:0002201 name: immature eye def: "Multi-tissue structure that consists of the structures that develop into the retina and lens." [ZFIN:curator] is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0002202 name: intermediate nucleus def: "Diencephalic nucleus which is located between the dorsal hypothalamus and the caudal tuberal nucleus and does not contain tyrosine hydroxylase immunoreactive cells." [ZFIN:ZDB-PUB-001220-2] is_a: TAO:0002191 ! diencephalic nucleus relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0002203 name: immature Schwann cell comment: Range covers Schwann cell precursor and immature Schwann cell, should be split and put into CL. is_a: TAO:0009147 ! glial cell (sensu Vertebrata) relationship: OBO_REL:part_of TAO:0000142 ! peripheral nervous system [Term] id: TAO:0002204 name: lateral nucleus of ventral telencephalon def: "Peripheral nucleus of the ventral telencephalon that has migrated to the periphery of the brain. From Neuroanatomy of the Zebrafish Brain." [ISBN:3764351209, ZFIN:curator] synonym: "area ventralis telencephali, nucleus lateralis" EXACT [] is_a: TAO:0002179 ! peripheral nucleus of ventral telencephalon [Term] id: TAO:0002205 name: lens vesicle def: "Portion of tissue that gives rise to the lens." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: develops_from TAO:0000122 ! lens placode relationship: OBO_REL:part_of TAO:0002201 ! immature eye [Term] id: TAO:0002206 name: macula communis is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0002207 name: medial motor nucleus of vagal nerve synonym: "mmX" EXACT [] is_a: TAO:0000297 ! vagal lobe [Term] id: TAO:0002208 name: mesonephric podocyte def: "Podocyte that is part of the kidney (mesonephros)." [ZFIN:curator] is_a: TAO:0009285 ! podocyte relationship: OBO_REL:part_of TAO:0001288 ! renal glomeruli [Term] id: TAO:0002209 name: midbrain nucleus is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0002210 name: mossy fiber is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000188 ! corpus cerebelli relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0002211 name: olfactory granule cell def: "Granule cell that is part of the olfactory bulb." [CL:curator] xref: CL:0000626 is_a: TAO:0009070 ! granule cell relationship: OBO_REL:part_of TAO:0000402 ! olfactory bulb [Term] id: TAO:0002212 name: optic fiber layer synonym: "optic fiber layers" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000046 ! retinal neural layer [Term] id: TAO:0002213 name: optic nerve head def: "Portion of cranial nerve II where large fasicles of axons from the optic fiber layer come together prior to leaving the eye." [ZFIN:curator] synonym: "optic nerve heads" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000435 ! cranial nerve II [Term] id: TAO:0002214 name: os suspensorium medial flange is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0001171 ! os suspensorium [Term] id: TAO:0002215 name: otic vesicle protrusion is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000051 ! otic vesicle [Term] id: TAO:0002216 name: otic vesicle ventral protrusion is_a: TAO:0002215 ! otic vesicle protrusion [Term] id: TAO:0002217 name: parasphenoid-pterosphenoid joint is_a: TAO:0000367 ! joint created_by: wasiladahdul creation_date: 2010-07-13T04:18:37Z [Term] id: TAO:0002218 name: parallel fiber synonym: "parallel fibers" EXACT PLURAL [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000394 ! molecular layer corpus cerebelli relationship: OBO_REL:part_of TAO:0000913 ! molecular layer valvula cerebelli [Term] id: TAO:0002219 name: parvocellular preoptic nucleus is_a: TAO:0002191 ! diencephalic nucleus [Term] id: TAO:0002220 name: pericardial cavity def: "Anatomical space in which the heart is located and is surrounded by the pericardium." [ZFIN:curator] is_a: TAO:0001643 ! perichondrium relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0002221 name: pericardial muscle is_a: TAO:0005145 ! muscle relationship: OBO_REL:part_of TAO:0000473 ! trunk musculature [Term] id: TAO:0002222 name: periventricular nucleus of ventral telencephalon is_a: TAO:0001660 ! basibranchial tooth relationship: OBO_REL:part_of TAO:0000304 ! ventral telencephalon [Term] id: TAO:0002223 name: pillar of the semicircular canal is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000431 ! semicircular canal [Term] id: TAO:0002224 name: pleuroperitoneal cavity is_a: TAO:0001668 ! anatomical space relationship: OBO_REL:part_of TAO:0001438 ! coelom [Term] id: TAO:0002225 name: posterior pronephric duct synonym: "posterior pronephric ducts" EXACT PLURAL [] is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000150 ! pronephric duct [Term] id: TAO:0002226 name: preglomerular nucleus def: "Diencephalic nucleus which is located in the caudal tuberculum. The preglomerular nuclei make up most of the migrated nuclei within the caudal tuberculum. From Neuroanatomy of the Zebrafish Brain." [ZFIN:curator] is_a: TAO:0001659 ! upper pharyngeal tooth relationship: OBO_REL:part_of TAO:0000633 ! caudal tuberculum [Term] id: TAO:0002227 name: presumptive atrioventricular canal def: "Portion of tissue that is part of the heart tube and will become the atrioventricular canal." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000360 ! heart tube [Term] id: TAO:0002228 name: presumptive atrium heart tube is_a: TAO:0001488 ! multi-tissue structure relationship: develops_from TAO:0002229 ! presumptive atrium primitive heart tube relationship: OBO_REL:part_of TAO:0000360 ! heart tube [Term] id: TAO:0002229 name: presumptive atrium primitive heart tube is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000149 ! primitive heart tube [Term] id: TAO:0002230 name: presumptive bulbus arteriosus def: "Portion of tissue that is part of the heart tube and will become the bulbus arteriosus." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: develops_from TAO:0000818 ! vagal neural crest relationship: OBO_REL:part_of TAO:0000360 ! heart tube [Term] id: TAO:0002231 name: presumptive cardiac ventricle heart tube def: "An eye that is located beneath the integument." [TAO:wd] is_a: TAO:0000107 ! eye is_a: TAO:0001488 ! multi-tissue structure relationship: develops_from TAO:0002232 ! presumptive cardiac ventricle primitive heart tube relationship: OBO_REL:part_of TAO:0000360 ! heart tube created_by: wasiladahdul creation_date: 2010-07-13T04:25:25Z [Term] id: TAO:0002232 name: presumptive cardiac ventricle primitive heart tube is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000149 ! primitive heart tube [Term] id: TAO:0002233 name: presumptive endocardium def: "Portion of tissue that is part of the heart tube and will become the endocardium." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000360 ! heart tube [Term] id: TAO:0002234 name: presumptive sinus venosus def: "Portion of tissue that is part of the heart tube and will become the sinus venosus." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000360 ! heart tube [Term] id: TAO:0002235 name: presumptive ventral mesoderm is_a: TAO:0001377 ! presumptive mesoderm [Term] id: TAO:0002236 name: pronephric distal early tubule synonym: "pronephric distal early tubules" EXACT PLURAL [] is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000150 ! pronephric duct [Term] id: TAO:0002237 name: pronephric podocyte def: "Podocyte that is part of the pronephros." [ZFIN:curator] is_a: TAO:0009285 ! podocyte relationship: OBO_REL:part_of TAO:0001557 ! pronephric glomerulus [Term] id: TAO:0002238 name: pronephric proximal convoluted tubule synonym: "PCT" EXACT [] is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000150 ! pronephric duct [Term] id: TAO:0002239 name: pronephric proximal straight tubule synonym: "proximal straight tubules" EXACT PLURAL [] is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000150 ! pronephric duct [Term] id: TAO:0002240 name: Purkinje cell layer corpus cerebelli is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000188 ! corpus cerebelli [Term] id: TAO:0002241 name: Purkinje cell layer valvula cerebelli is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000603 ! valvula cerebelli [Term] id: TAO:0002242 name: scale primordium is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0001119 ! dermis [Term] id: TAO:0002243 name: statoacoustic (VIII) nucleus synonym: "cochlear nucleus" EXACT [] synonym: "vestibulocochlear nucleus" EXACT [] relationship: OBO_REL:part_of TAO:0000029 ! hindbrain [Term] id: TAO:0002244 name: supraoptic tract synonym: "SOT" EXACT [] is_a: TAO:0000145 ! CNS tracts and commissures relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0002245 name: tunica externa def: "Multi-tissue structure that is the external layer of the swim bladder that is covered by the peritoneum, and made of elastic fibres and ichthyocol (short needles of collagen)." [http:www.briancoad.com/Dictionary/T.htm] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000076 ! swim bladder [Term] id: TAO:0002246 name: tunica interna def: "Multi-tissue structure that is the internal layer of the swim bladder and is comprised of thin endoderm and a smooth muscle layer called the muscularis mucosa with longitudinal and circular fibres with some collagen." [http:www.briancoad.com/Dictionary/T.htm] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000076 ! swim bladder [Term] id: TAO:0002247 name: ventricular endocardium def: "Endocardium that is part of the cardiac ventricle." [ZFIN:curator] is_a: TAO:0001320 ! endocardium relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle [Term] id: TAO:0002248 name: supratemporal commissure relationship: OBO_REL:part_of TAO:0000034 ! lateral line system created_by: wasiladahdul creation_date: 2010-07-13T04:44:17Z [Term] id: TAO:0002249 name: ctenius synonym: "ctenii" EXACT PLURAL [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0000277 ! scale created_by: wasiladahdul creation_date: 2010-07-26T10:42:43Z [Term] id: TAO:0002250 name: epural 2 is_a: TAO:0000660 ! epural created_by: wasiladahdul creation_date: 2010-07-26T10:46:38Z [Term] id: TAO:0002251 name: epural 3 is_a: TAO:0000660 ! epural created_by: wasiladahdul creation_date: 2010-07-26T10:46:43Z [Term] id: TAO:0002252 name: epural 1 is_a: TAO:0000660 ! epural created_by: wasiladahdul creation_date: 2010-07-26T10:46:46Z [Term] id: TAO:0002253 name: pyloric caecum synonym: "pyloric appendage" EXACT [] is_a: TAO:0001834 ! process relationship: OBO_REL:part_of TAO:0001338 ! intestine created_by: wasiladahdul creation_date: 2010-07-26T11:08:57Z [Term] id: TAO:0002254 name: chin def: "Surface structure that is the anteriormost region of the lower jaw." [TAO:wd] is_a: TAO:0000292 ! surface structure created_by: wasiladahdul creation_date: 2010-07-26T05:00:23Z [Term] id: TAO:0005000 name: basal communicating artery synonym: "BCA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005001 name: posterior communicating artery def: "An artery that connects caudal division of the internal carotid artery and the basal communicating artery to the basilar artery. Isogai et al. 2001." [ZFIN:curator] synonym: "caudal communicating segment" EXACT [] synonym: "PCA" EXACT [] synonym: "PCS" EXACT [] synonym: "posterior communicating segment of the basilar artery" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005002 name: basilar artery synonym: "BA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005003 name: pharyngeal vasculature synonym: "branchial basket" EXACT [] synonym: "branchial vasculature" EXACT [] relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature relationship: OBO_REL:part_of TAO:0001306 ! pharyngeal arch [Term] id: TAO:0005004 name: aortic arch synonym: "aortic arches" EXACT PLURAL [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005003 ! pharyngeal vasculature [Term] id: TAO:0005005 name: aortic arch 1 synonym: "AA1" EXACT [] synonym: "mandibular aortic arch" EXACT [] is_a: TAO:0005004 ! aortic arch [Term] id: TAO:0005006 name: aortic arch 2 synonym: "AA2" EXACT [] synonym: "hyoid aortic arch" EXACT [] is_a: TAO:0005004 ! aortic arch [Term] id: TAO:0005007 name: aortic arch 3 def: "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001." [ZFIN:curator] synonym: "AA3" EXACT [] is_a: TAO:0005004 ! aortic arch [Term] id: TAO:0005008 name: aortic arch 4 def: "Aortic arches 3 and 4 are not remodeled but are retained largely intact as the branchial arteries providing circulation through the gills. These areches are direct branches from the ventral aorta to the lateral dorsal aorta. Isogai et al. 2001." [ZFIN:curator] synonym: "AA4" EXACT [] is_a: TAO:0005004 ! aortic arch [Term] id: TAO:0005009 name: aortic arch 5 def: "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001." [ZFIN:curator] synonym: "AA5" EXACT [] is_a: TAO:0005004 ! aortic arch [Term] id: TAO:0005010 name: mid cerebral vein def: "The mesencephalic veins (MsV) enter the mid cerebral veins (MCeV) at the dorsal midline. THe MCeVs originate at the dorsal midline, proceede lateraly in a ventral direction to drain into the paired primordial midbrain channels (PHBC). ogai et al. 2001., Kimmel et al. 1993" [ZFIN:curator] synonym: "MCeV" EXACT [] synonym: "mid-cerebral vein" EXACT [] synonym: "middle cerebral vein" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005011 name: pseudobranchial artery def: "A vascular loop attached to the efferent part of the mandibular arch that forms at 3.5 dpf. Isogai et al. 2001." [ZFIN:curator] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0005005 ! aortic arch 1 [Term] id: TAO:0005012 name: afferent filamental artery synonym: "AFA" EXACT [] synonym: "afferent filamental arteries" EXACT PLURAL [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000666 ! filamental artery relationship: OBO_REL:part_of TAO:0000716 ! afferent branchial artery [Term] id: TAO:0005013 name: concurrent branch afferent branchial artery def: "The branch of the afferent branchial artery that continues posteriodorsally. Isogai et al. 2001." [ZFIN:curator] synonym: "CCB" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000716 ! afferent branchial artery [Term] id: TAO:0005014 name: recurrent branch afferent branchial artery def: "The anterioventral proceeding branch of the afferent branchial artery. Isogai et al. 2001." [ZFIN:curator] synonym: "RCB" EXACT [] synonym: "recurrent branch afferent branchial arteries" EXACT PLURAL [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000716 ! afferent branchial artery [Term] id: TAO:0005015 name: afferent lamellar arteriole synonym: "afferent lamellar arterioles" EXACT PLURAL [] synonym: "AFL" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000211 ! gill lamella relationship: OBO_REL:part_of TAO:0005012 ! afferent filamental artery [Term] id: TAO:0005016 name: aortic arch 6 def: "The fifth and sixth arches, which come on-line at approximately 2.5 dpf, have a common trunk from the ventral aorta and drain to the midline dorsal aorta via an independent route. The fifth and sixth aortic arches supply the trunk and tail with oxigenated blood. Isogai et al. 2001." [ZFIN:curator] synonym: "AA6" EXACT [] is_a: TAO:0005004 ! aortic arch [Term] id: TAO:0005017 name: primordial midbrain channel def: "The vessel between the anterior cerebral vein and the mid cerebral vein. Isogai et al. 2001." [ZFIN:curator] synonym: "PMBC" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005018 name: efferent filamental artery synonym: "EFA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000202 ! efferent branchial artery relationship: OBO_REL:part_of TAO:0000666 ! filamental artery [Term] id: TAO:0005019 name: efferent lamellar arteriole synonym: "efferent lamellar arterioles" EXACT PLURAL [] synonym: "ELA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000211 ! gill lamella relationship: OBO_REL:part_of TAO:0005018 ! efferent filamental artery [Term] id: TAO:0005020 name: central artery def: "Arteries that irrigate the forebrain and midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "CtA" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000099 ! brain vasculature [Term] id: TAO:0005021 name: cerebellar central artery def: "Extend upward from the PCS, branch to provide an arterial feed to the hindbrain, then drain back down into the PHBC Isogai et al. 2001." [ZFIN:curator] synonym: "CCtA" EXACT [] is_a: TAO:0005020 ! central artery [Term] id: TAO:0005022 name: opercular artery def: "The opercular artery arises from the hyoid stump on the first aortic arch, then follows the lateral margin of the operculum (gill covering) ventrally to reconnect into the proximal part of the first aortic arch. Isogai et al. 2001." [ZFIN:curator] synonym: "external carotid artery" EXACT [] synonym: "ORA" EXACT [] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0005006 ! aortic arch 2 [Term] id: TAO:0005023 name: hematopoietic system is_a: TAO:0001439 ! anatomical system [Term] id: TAO:0005024 name: trunk vasculature is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0005025 name: dorsal longitudinal anastomotic vessel def: "Trunk vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "DLAV" EXACT [] relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature relationship: OBO_REL:part_of TAO:0005037 ! tail vasculature [Term] id: TAO:0005026 name: primary head sinus def: "Main route for venous drainage of the anterior and mid cerebral veins as well as portions of the primordial hindbrain channel. Isogai et al. 2001." [ZFIN:curator] synonym: "lateral head vein" EXACT [] synonym: "PHS" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005027 name: posterior cerebral vein def: "Vein that drains the dorsal longitudinal vessel and the caudal portions of the venous capillary network of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "caudal cerebral vein" EXACT [] synonym: "PCeV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005028 name: ventral wall of dorsal aorta def: "Region where blood progenitor markers are expressed. Probable site of definitive hematopoiesis between 36hpf and 4dpf." [ZFIN:curator] synonym: "AGM" EXACT [] synonym: "aorta gonad mesonephros region" EXACT [] relationship: OBO_REL:part_of TAO:0000014 ! dorsal aorta relationship: OBO_REL:part_of TAO:0005023 ! hematopoietic system [Term] id: TAO:0005029 name: rostral blood island def: "Hematopoietic tissue derived from the cephalic mesoderm. Predominantly produces myeloid cells. de Jong and Zon 2005." [ZFIN:curator] synonym: "RBI" EXACT [] relationship: develops_from TAO:0005041 ! anterior lateral plate mesoderm relationship: OBO_REL:part_of TAO:0005023 ! hematopoietic system [Term] id: TAO:0005030 name: dorsal ciliary vein synonym: "DCV" EXACT [] is_a: TAO:0000082 ! vein relationship: develops_from TAO:0005082 ! dorsal branch nasal ciliary artery relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005031 name: dorsal longitudinal vein def: "Vessel that connects to the primitive hindbrain channel and the basilar artery at the caudal end of the medulla oblongata. Isogai et al. 2001." [ZFIN:curator] synonym: "DLV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0000099 ! brain vasculature [Term] id: TAO:0005032 name: optic vein def: "Vein that connects to the hyaloid vein that drains the eye. External to eye. Isogai et al. 2001." [ZFIN:curator] synonym: "OV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005033 name: vertebral artery is_a: TAO:0000005 ! artery [Term] id: TAO:0005034 name: parachordal vessel def: "Vessels run longitudinally along the horizontal myoseptum. These vessels are not functional until after lumenization which occurs near 4 dpf. Isogai et al. 2003." [ZFIN:curator] synonym: "PAV" EXACT [] is_a: TAO:0000082 ! vein relationship: develops_from TAO:0000477 ! posterior cardinal vein relationship: develops_from TAO:0001057 ! intersegmental vein relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature relationship: OBO_REL:part_of TAO:0005037 ! tail vasculature [Term] id: TAO:0005035 name: subintestinal vein synonym: "SIV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0005036 name: supraintestinal artery def: "A continuation of the anterior mesenteric artery, which branches out from the dorsal aorta just caudal to the pronephric glomus. Isogai et al. 2001." [ZFIN:curator] synonym: "SIA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005037 name: tail vasculature is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0005038 name: supraintestinal vein is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0005039 name: anterior lateral mesoderm relationship: OBO_REL:part_of TAO:0001065 ! lateral mesoderm [Term] id: TAO:0005040 name: posterior lateral mesoderm synonym: "PLM" EXACT [] relationship: OBO_REL:part_of TAO:0001065 ! lateral mesoderm [Term] id: TAO:0005041 name: anterior lateral plate mesoderm synonym: "ALPM" EXACT [] relationship: OBO_REL:part_of TAO:0000121 ! lateral plate mesoderm [Term] id: TAO:0005042 name: posterior lateral plate mesoderm synonym: "PLPM" EXACT [] relationship: OBO_REL:part_of TAO:0000121 ! lateral plate mesoderm [Term] id: TAO:0005043 name: nevi def: "An ectopic melanophore accumulation analogous to a nevi (mole) in humans." [ZFIN:curator] synonym: "f-nevi" EXACT [] relationship: OBO_REL:part_of TAO:0001119 ! dermis [Term] id: TAO:0005044 name: optic artery def: "The artery that carries blood to the eye. It branches from the internal carotid artery and enters the eye ventrally through the optic fissure. Isogai et al. 2001." [ZFIN:curator] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005045 name: hyaloid artery def: "Artery that is internal to the eye. Isogai et al. 2001." [ZFIN:curator] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005046 ! hyaloid vessel [Term] id: TAO:0005046 name: hyaloid vessel synonym: "hyaloid vasculature" EXACT [] synonym: "hyaloid vessels" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005047 name: hyaloid vein def: "Vein internal to the eye. Isogai et al. 2001." [ZFIN:curator] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0005046 ! hyaloid vessel [Term] id: TAO:0005048 name: primitive prosencephalic artery def: "Vessel that branches from cranial division of the internal carotid artery, extending laterally around the rostral end of the head. Isogai et al. 2001." [ZFIN:curator] synonym: "PPrA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005049 name: prosencephalic artery def: "After the primitive prosencephalic artery forms it becomes disconnected from the cranial division of the internal carotid artery and instead it connects to the anterior mesencephalic central artery and the communicating vessels of the palatocerebral artery." [ZFIN:curator] synonym: "PrA" EXACT [] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0005048 ! primitive prosencephalic artery [Term] id: TAO:0005050 name: palatocerebral artery def: "The PLA branches ventrally from the CrDI. It extends rostrally along the base of mid- and forebrain, then loops medially and links to the corresponding vessel from the other side of the embryo. Isogai et al. 2001." [ZFIN:curator] synonym: "PLA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005051 name: communicating vessel palatocerebral artery def: "Connect the palatocerebral artery with the prosencephalic artery. Isogai et al. 2001." [ZFIN:curator] synonym: "CMV" EXACT [] synonym: "communicating vessels" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005052 name: anterior mesencephalic central artery def: "Arteries that irrigate rostral regions of the midbrain. They extend between the Basial communicating artery to the anterior cerebral vein. Isogai et al. 2001." [ZFIN:curator] synonym: "AMCtA" EXACT [] synonym: "rostral mesencephalic central artery" EXACT [] is_a: TAO:0005020 ! central artery [Term] id: TAO:0005053 name: nasal ciliary artery synonym: "NCA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005054 name: inner optic circle synonym: "IOC" EXACT [] relationship: develops_from TAO:0005082 ! dorsal branch nasal ciliary artery relationship: develops_from TAO:0005083 ! ventral branch nasal ciliary artery relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005055 name: median palatocerebral vein def: "Drains the PLA loop proceeds straight caudally along the cranial midline just above the pharynx, just below the diencephalon. Forms a 'T' with the palatocerebral veins. Isogai et al. 2001." [ZFIN:curator] synonym: "MPLV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005056 name: palatocerebral vein def: "Vein that drains the median palatocerebral vein into the optic vein. Isogai et al. 2001." [ZFIN:curator] synonym: "PLV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005057 name: epicardium def: "External layer of the heart." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0005058 name: ventricular epicardium def: "The external layer of the ventricle bounding the ventricular myocardium. It is formed by a single layer of mesothelial cells supported by a basal lamina, and imbricated with collagen, fibroblasts, and vascular structures in the subepicardial space. Hu et al. 2001." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0005057 ! epicardium [Term] id: TAO:0005059 name: trabecular layer def: "The layer of the myocardium composed of projections of contractile myocytes. The trabecular layer is bounded internally by the the endocardium. Unlike the trabeculations of higher vertebrates, both atrial and ventricular trabeculae of the zebrafish have more strut-like character, and are more uniform without apparent regional differences Hu et al. 2001." [ZFIN:curator] synonym: "trabeculae" EXACT [] relationship: OBO_REL:part_of TAO:0001319 ! myocardium [Term] id: TAO:0005060 name: trabecular layer of ventricle relationship: OBO_REL:part_of TAO:0005059 ! trabecular layer relationship: OBO_REL:part_of TAO:0005061 ! ventricular myocardium [Term] id: TAO:0005061 name: ventricular myocardium def: "Muscular layer of the cardiac ventricle composed of a compact myocardial layer surrounding the trabecular layer Hu et al. 2001." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0001319 ! myocardium [Term] id: TAO:0005062 name: compact layer of ventricle def: "The outer layer the ventricular myocardium, muscle fibers are arranged in a compact form and involved the entire ventricle." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0005061 ! ventricular myocardium [Term] id: TAO:0005063 name: cardiac conduction system synonym: "central conduction system" EXACT [] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0005064 name: atrioventricular valve def: "The atrioventricular valve has four distinct leaflets oriented anterior, posterior, left, and right of the atrioventricular orifice. Hu et al. 2001." [ZFIN:curator] is_a: TAO:0005065 ! heart valve relationship: develops_from TAO:0001317 ! endocardial cushion relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0000471 ! atrium [Term] id: TAO:0005065 name: heart valve synonym: "heart valves" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0000114 ! heart [Term] id: TAO:0005066 name: bulbus arteriosus outer layer def: "Composed of scattered layers of interrupted elastic lamina. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus externa" EXACT [] relationship: OBO_REL:part_of TAO:0000173 ! bulbus arteriosus [Term] id: TAO:0005067 name: bulbus arteriosus middle layer def: "Composed of 7-10 layers of helically arranged smooth muscle cells surrounded by a fine network of collagen, reticular, and elastic fibrils. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus media" EXACT [] relationship: OBO_REL:part_of TAO:0000173 ! bulbus arteriosus [Term] id: TAO:0005068 name: bulbus arteriosus inner layer def: "Composed of subendothelium with longitudinally oriented collagen, reticular fibrils, elastic fibers, and smooth muscle cells bound by a thin endothelial layer. Hu et al. 2001." [ZFIN:curator] synonym: "bulbus arteriosus intima" EXACT [] relationship: OBO_REL:part_of TAO:0000173 ! bulbus arteriosus [Term] id: TAO:0005069 name: sinoatrial node relationship: OBO_REL:part_of TAO:0005063 ! cardiac conduction system [Term] id: TAO:0005070 name: atriovetricular node synonym: "AV node" EXACT [] relationship: develops_from TAO:0005073 ! atrioventricular ring relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0000471 ! atrium relationship: OBO_REL:part_of TAO:0005063 ! cardiac conduction system [Term] id: TAO:0005071 name: distal conduction system synonym: "His-Purkinje system" EXACT [] synonym: "His-Purkinji network" EXACT [] synonym: "HPS" EXACT [] relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0005063 ! cardiac conduction system [Term] id: TAO:0005072 name: endocardial ring relationship: OBO_REL:part_of TAO:0001320 ! endocardium [Term] id: TAO:0005073 name: atrioventricular ring synonym: "AV ring" EXACT [] is_a: TAO:0005072 ! endocardial ring relationship: OBO_REL:part_of TAO:0000009 ! cardiac ventricle relationship: OBO_REL:part_of TAO:0000471 ! atrium [Term] id: TAO:0005074 name: central cardiac conduction system def: "Cardiac conduction system, characterized by slow impulse propagation and prolonged refractory periods." [ZFIN:curator] is_a: TAO:0005063 ! cardiac conduction system [Term] id: TAO:0005075 name: peripheral cardiac conduction system def: "Portion of the cardiac conduction system, with rapid impulse propagation." [ZFIN:curator] is_a: TAO:0005063 ! cardiac conduction system [Term] id: TAO:0005076 name: primordial vasculature is_a: TAO:0000010 ! cardiovascular system [Term] id: TAO:0005077 name: vascular cord is_a: TAO:0005076 ! primordial vasculature [Term] id: TAO:0005078 name: middle mesencephalic central artery def: "Project rostrally and dorsally from the AMCtA to to irrigate the midportion of the midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "MMCtA" EXACT [] is_a: TAO:0005020 ! central artery [Term] id: TAO:0005079 name: posterior mesencephalic central artery def: "Project dorsally from BCA to irrigate the caudal part of midbrain Isogai et al. 2001." [ZFIN:curator] synonym: "caudal mesencephalic central artery" EXACT [] synonym: "PMCtA" EXACT [] is_a: TAO:0005020 ! central artery [Term] id: TAO:0005080 name: anterior mesenteric artery def: "An artery deep in the trunk that connects the dorsal aorta to the supraintestinal artery. Isogai et al. 2001." [ZFIN:curator] synonym: "AMA" EXACT [] synonym: "rostral mesenteric artery" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005081 name: internal carotid artery synonym: "ICA" EXACT [] is_a: TAO:0000005 ! artery relationship: develops_from TAO:0001053 ! primitive internal carotid artery relationship: OBO_REL:part_of TAO:0000097 ! carotid artery [Term] id: TAO:0005082 name: dorsal branch nasal ciliary artery is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005053 ! nasal ciliary artery [Term] id: TAO:0005083 name: ventral branch nasal ciliary artery is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005053 ! nasal ciliary artery [Term] id: TAO:0005084 name: metencephalic artery def: "These arteies branch dorsally from both sides of the posterior communicating artery looping up to join with the opposite MtA as well as with both middle cerebral veins at the dorsal midline of the head. Isogai et al. 2001." [ZFIN:curator] is_a: TAO:0000005 ! artery [Term] id: TAO:0005085 name: nasal artery def: "The nasal arteries start at the internal carotid artey and travel rostrally, passing along the right and left walls of the nasal sac at the most rostral end of the head. From the nasal sac, the NA flows into the nasal veins. Isogai et al. 2001." [ZFIN:curator] synonym: "NA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005086 name: pectoral artery def: "The pectoral (subclavian) arteries originate from the dorsal aorta and takes the blood outward into the fin from the paired portion of the dorsal aorta posterior to the last aortic arch. Kimmel et al. 1993" [ZFIN:curator] synonym: "PA" EXACT [] synonym: "subclavian artery" EXACT [] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0005096 ! pectoral fin vasculature [Term] id: TAO:0005087 name: pectoral vein synonym: "PV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0005096 ! pectoral fin vasculature [Term] id: TAO:0005088 name: posterior mesenteric artery def: "Branch ventrally from the dorsal aorta and anastomose longitudinally along the dorsal wall of the hindgut, forming the caudal part of the supraintestinal artery. Isogai et al. 2001." [ZFIN:curator] synonym: "caudal mesenteric artery" EXACT [] synonym: "PMA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005089 name: swim bladder artery def: "An elaborate set of vessels that branche off caudally from the anterior mesenteric artery just after the dorsal aorta. The SBA vascular loops are located on the ventral side of the swim bladder. Isogai et al. 2001." [ZFIN:curator] synonym: "SBA" EXACT [] is_a: TAO:0000005 ! artery [Term] id: TAO:0005090 name: hepatic portal vein synonym: "HPV" EXACT [] synonym: "primary hepatic portal veins" EXACT [] is_a: TAO:0000082 ! vein [Term] id: TAO:0005091 name: hepatic sinusoid def: "Wide thin-walled blood vessels in the liver. In mammals they have neither veinous or arterial markers." [ZFIN:curator] synonym: "hepatic sinusoids" EXACT PLURAL [] relationship: OBO_REL:part_of TAO:0005024 ! trunk vasculature [Term] id: TAO:0005092 name: mesencephalic vein synonym: "MsV" EXACT [] is_a: TAO:0000082 ! vein [Term] id: TAO:0005093 name: nasal vein synonym: "NV" EXACT [] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005094 name: choroidal vascular plexus def: "Develops adjacent to the pigment epithelium of the eye. The choroidal plexus develops from the primitive mesencephalic artery. Initially blood enters from the mesencephalic central artery, and the dorsal ciliary vein. The plexus drains via the ophthalmic vein. Isogai et al. 2001." [ZFIN:curator] synonym: "CVP" EXACT [] is_a: TAO:0001267 ! cranial vasculature [Term] id: TAO:0005095 name: fin vasculature is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0005096 name: pectoral fin vasculature is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005097 name: caudal fin vasculature is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005098 name: central ray artery def: "Positioned in the intraray mesenchym between the hemirays of the lepidotrichia,. Huang et al. 2003." [ZFIN:curator] is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005099 name: ray vein def: "Lie flanking and just lateral to the fin ray, in the interray mesenchyme. Huang et al. 2003." [ZFIN:curator] is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005100 name: intervessel commissure def: "Vessels that travel between artery and veins or vein and vein in a single ray." [ZFIN:curator] synonym: "intervessel comisures" EXACT PLURAL [] is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005101 name: interray vessel def: "Vessels that travel between veins in adjacent rays." [ZFIN:curator] synonym: "interray vessels" EXACT PLURAL [] is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005102 name: presumptive median fin fold is_a: TAO:0001116 ! presumptive structure [Term] id: TAO:0005103 name: presumptive ventral fin fold is_a: TAO:0005102 ! presumptive median fin fold [Term] id: TAO:0005104 name: presumptive dorsal fin fold is_a: TAO:0005102 ! presumptive median fin fold [Term] id: TAO:0005105 name: lymph vessel def: "A network of blunt ended vessels lacking direct connection to the blood vascular system. These vessels collect and drain fluids and macromolecules from interstitial spaces throughout the animal. They derive from a subpopulation of endothelial cells and have walls that are much thinner than the blood carrying vessels. Lymphatic vessels are usually classified as either superficial or deep." [ZFIN:curator] is_a: TAO:0001079 ! blood vasculature [Term] id: TAO:0005106 name: longitudinal lateral lymphatic vessel synonym: "LLL" EXACT [] is_a: TAO:0005105 ! lymph vessel [Term] id: TAO:0005107 name: pectoral lymphatic vessel synonym: "PL" EXACT [] is_a: TAO:0005105 ! lymph vessel [Term] id: TAO:0005108 name: facial lymphatic vessel synonym: "FL" EXACT [] is_a: TAO:0005105 ! lymph vessel [Term] id: TAO:0005109 name: jugular lymphatic vessel synonym: "JL" EXACT [] is_a: TAO:0005105 ! lymph vessel [Term] id: TAO:0005110 name: thoracic duct is_a: TAO:0005105 ! lymph vessel relationship: develops_from TAO:0000477 ! posterior cardinal vein relationship: OBO_REL:part_of TAO:0001073 ! axial vasculature [Term] id: TAO:0005111 name: medial forebrain bundle is_a: TAO:0000145 ! CNS tracts and commissures [Term] id: TAO:0005112 name: dorsal lateral line def: "One of eight distinct lateral lines in the 4-day larva. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] is_a: TAO:0001469 ! lateral line relationship: OBO_REL:part_of TAO:0001471 ! posterior lateral line system [Term] id: TAO:0005113 name: dorsal lateral line neuromast def: "Neuromast that is part of the dorsal lateral line. Kimmel et al, 1995. (Also see Anatomical Atlas entry for lateral line by T. Whitfield.)" [ZFIN:curator] synonym: "neuromast dorsal" EXACT [] is_a: TAO:0000243 ! neuromast relationship: OBO_REL:part_of TAO:0005112 ! dorsal lateral line [Term] id: TAO:0005114 name: middle lateral line system is_a: TAO:0000034 ! lateral line system [Term] id: TAO:0005115 name: primary posterior lateral line primordium def: "Primordium that forms the first neuromasts of the posterior lateral line. This primordium travels at 1.5-1.7 somites/hour and deposits neuromast that are polarized along the antero-posterior axis." [ZFIN:curator] synonym: "primary posterior lateral line primordia" EXACT PLURAL [] synonym: "primI" EXACT [] is_a: TAO:0001157 ! posterior lateral line primordium relationship: develops_from TAO:0001156 ! posterior lateral line placode [Term] id: TAO:0005116 name: secondary posterior lateral line primordium def: "Second lateral line primordium. These primordia moves at 0.2 somites/hour and deposite neromasts that are polarized in a dorso-ventral direction." [ZFIN:curator] synonym: "secondary posterior lateral line primordia" EXACT PLURAL [] is_a: TAO:0001157 ! posterior lateral line primordium [Term] id: TAO:0005117 name: anterior lateral line primordium def: "A migrating group of cells originating from an anterior lateral line placode. The primordium deposits neuromasts and interneuromasts between them during its migration." [ZFIN:curator] synonym: "anterior lateral line primordia" EXACT PLURAL [] is_a: TAO:0000228 ! lateral line primordium relationship: OBO_REL:part_of TAO:0001468 ! anterior lateral line system [Term] id: TAO:0005118 name: middle lateral line primordium def: "A migrating group of cells originating from the middle lateral line placode. The primordium deposits neuromasts with interneuromasts between them." [ZFIN:curator] synonym: "middle lateral line primordia" EXACT PLURAL [] is_a: TAO:0000228 ! lateral line primordium relationship: OBO_REL:part_of TAO:0005114 ! middle lateral line system [Term] id: TAO:0005119 name: barbel primordium def: "A surface structure that will eventually grow to form a barbel. The primordium is rich in taste buds. The final location for taste buds present in the primordium is the distal tip of the mature barbel." [ZFIN:curator] synonym: "barbel primordia" EXACT PLURAL [] is_a: TAO:0000292 ! surface structure [Term] id: TAO:0005120 name: peritoneum def: "An epithelium that lines the peritoneal cavity." [ZFIN:curator] is_a: TAO:0001486 ! epithelium relationship: develops_from TAO:0000041 ! mesoderm [Term] id: TAO:0005121 name: middle lateral line placode is_a: TAO:0001310 ! dorsolateral placode relationship: OBO_REL:part_of TAO:0005114 ! middle lateral line system [Term] id: TAO:0005122 name: dorsal axial hypoblast relationship: OBO_REL:part_of TAO:0001378 ! axial hypoblast [Term] id: TAO:0005123 name: gut epithelium def: "Epithelium lining the lumen of the gut." [ZFIN:curator] is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0005124 name: intestinal epithelium def: "Simple columnar epithelium that lines the intestine, sometimes pseudostratified, with absorptive brush-border cells and mucous goblet cells clearly visible. Crosnier et al. 2005" [ZFIN:curator] synonym: "intestine epithelium" EXACT [] is_a: TAO:0001496 ! simple columnar epithelium relationship: OBO_REL:part_of TAO:0001338 ! intestine relationship: OBO_REL:part_of TAO:0005123 ! gut epithelium [Term] id: TAO:0005125 name: intestinal villus def: "The entire digestive tract is lined by well developed villi, which are longest in the intestinal bulb and decrease progressively in size towards the caudal end of the intestine. No crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips. Crosnier et al. 2005" [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0005124 ! intestinal epithelium [Term] id: TAO:0005126 name: intestinal bulb epithelium def: "Intestinal epithelium which lines the lumen of the intestinal bulb." [ZFIN:curator] is_a: TAO:0005124 ! intestinal epithelium relationship: OBO_REL:part_of TAO:0001076 ! intestinal bulb [Term] id: TAO:0005127 name: mid intestine epithelium def: "Intestinal epithelium which lines the lumen of the mid intestine." [ZFIN:curator] is_a: TAO:0005124 ! intestinal epithelium relationship: OBO_REL:part_of TAO:0001323 ! mid intestine [Term] id: TAO:0005128 name: posterior intestine epithelium def: "Intestinal epithelium which lines the lumen of the posterior intestine." [ZFIN:curator] is_a: TAO:0005124 ! intestinal epithelium relationship: OBO_REL:part_of TAO:0000706 ! posterior intestine [Term] id: TAO:0005129 name: mesentery def: "A double layer composed of peritoneum that attaches the visceral organs to the body wall." [ZFIN:curator] is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0005120 ! peritoneum [Term] id: TAO:0005130 name: dorsal mesentery def: "The mesentery that originates from the dorsal side of the peritoneal cavity." [ZFIN:curator] is_a: TAO:0005129 ! mesentery [Term] id: TAO:0005131 name: parietal peritoneum def: "The peritoneum that lines the walls of the peritoneal cavity." [ZFIN:curator] is_a: TAO:0005120 ! peritoneum [Term] id: TAO:0005132 name: visceral peritoneum def: "The peritoneum that covers the external surfaces of most abdominal organs." [ZFIN:curator] is_a: TAO:0005120 ! peritoneum [Term] id: TAO:0005133 name: ventral mesentery def: "The mesentery that originates from the ventral side of the peritoneal cavity." [ZFIN:curator] is_a: TAO:0005129 ! mesentery [Term] id: TAO:0005134 name: dental epithelium def: "Epithelium that is part of a developing tooth or dental organ." [ZFIN:curator] is_a: TAO:0001486 ! epithelium [Term] id: TAO:0005135 name: primary dental epithelium def: "Epithelium that surrounds a primary tooth. This epithelium is committed to formation of replacement teeth." [ZFIN:curator] synonym: "pharyngeal tooth epithelium" EXACT [] synonym: "tooth epithelium" EXACT [] is_a: TAO:0005134 ! dental epithelium [Term] id: TAO:0005136 name: inner dental epithelium def: "Inner layer of the dental organ, composed of ameloblasts." [ZFIN:curator] synonym: "inner enamel epithelium" EXACT [] is_a: TAO:0005134 ! dental epithelium relationship: OBO_REL:part_of TAO:0005138 ! dental organ [Term] id: TAO:0005137 name: outer dental epithelium def: "Outer layer of the dental organ." [ZFIN:curator] synonym: "outer enamel epithilium" EXACT [] is_a: TAO:0005134 ! dental epithelium relationship: OBO_REL:part_of TAO:0005138 ! dental organ [Term] id: TAO:0005138 name: dental organ def: "A structure that is involved in tooth formation. A bell shape two layer epithelial structure that descends toward the ceratobranchial 5 bone, enclosing the dental mesenchyme. At later times in tooth development the cells at the apex of the bell may be involved in enameloid formation. This structure remains at the base of the erupted tooth and is the source of replacement teeth." [ZFIN:curator] synonym: "enamel organ" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: develops_from TAO:0001153 ! tooth placode [Term] id: TAO:0005139 name: dental mesenchyme def: "Mesenchyme enclosed by dental organ." [ZFIN:curator] is_a: TAO:0000113 ! head mesenchyme relationship: OBO_REL:part_of TAO:0005138 ! dental organ [Term] id: TAO:0005140 name: dental papilla def: "Tissue of the developing tooth. It is composed of pre-odontoblast and undiffentiated mesnchyme cells and connects to the basal lamina." [ZFIN:curator] synonym: "pharyngeal tooth mesenchyme" EXACT [] synonym: "tooth mesenchyme" EXACT [] is_a: TAO:0001477 ! portion of tissue relationship: develops_from TAO:0005139 ! dental mesenchyme [Term] id: TAO:0005141 name: tooth pulp def: "Material in the center of the dentine of the mature tooth. In secondary teeth the pulp contains blood vessles and odontoblast." [ZFIN:curator] relationship: develops_from TAO:0005140 ! dental papilla relationship: OBO_REL:part_of TAO:0001622 ! odontode relationship: OBO_REL:part_of TAO:0001625 ! tooth [Term] id: TAO:0005142 name: enameloid def: "A dentine-like hypermineralized substance that covers the zebrafish tooth tip." [ZFIN:curator] synonym: "enamel" EXACT [] is_a: TAO:0001487 ! portion of organism substance relationship: OBO_REL:part_of TAO:0001622 ! odontode relationship: OBO_REL:part_of TAO:0001625 ! tooth [Term] id: TAO:0005143 name: dentine def: "Mineralized collagen containing substance that forms the tooth structure." [ZFIN:curator] is_a: TAO:0001487 ! portion of organism substance relationship: OBO_REL:part_of TAO:0001622 ! odontode relationship: OBO_REL:part_of TAO:0001625 ! tooth [Term] id: TAO:0005144 name: ampullary nerve def: "A branch of the 8th cranial nerve that innervates the cristae ampullaris." [ZFIN:curator] is_a: TAO:0007009 ! nerve relationship: OBO_REL:part_of TAO:0000247 ! cranial nerve VIII [Term] id: TAO:0005145 name: muscle def: "Portion of tissue composed of contractile fibers." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000548 ! musculature system [Term] id: TAO:0005146 name: area postrema def: "An area of medulla oblongata, outside the blood-brain barrier. The apical terminals of the neurons are, in a strategic location either to monitor the chemical constitution of the plasma or to release neurogenic substances into the general circulation. Ma 1997." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata [Term] id: TAO:0005147 name: regenerating tissue def: "A portion of tissue that is regrowing after damage or amputation." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue [Term] id: TAO:0005148 name: apical epidermal cap def: "Part of the regeneration epithelium closest to the fin." [ZFIN:curator] is_a: TAO:0005147 ! regenerating tissue relationship: OBO_REL:part_of TAO:0001389 ! regeneration epithelium [Term] id: TAO:0005149 name: distal epidermal cap def: "Part of regeneration epithelium at the tip of the fin." [ZFIN:curator] is_a: TAO:0005147 ! regenerating tissue relationship: OBO_REL:part_of TAO:0001389 ! regeneration epithelium [Term] id: TAO:0005150 name: basal regeneration epithelium def: "Layer of the wound epidermis that surrounds the blastema." [ZFIN:curator] synonym: "basal wound epidermis" EXACT [] is_a: TAO:0005147 ! regenerating tissue relationship: OBO_REL:part_of TAO:0001389 ! regeneration epithelium [Term] id: TAO:0005151 name: gold iridophore def: "Iridescent iridophore containing gold reflecting platelets." [ZFIN:curator] is_a: TAO:0009199 ! iridophore [Term] id: TAO:0005152 name: silver iridophore def: "Iridescent iridophore containing silver reflecting platelets." [ZFIN:curator] is_a: TAO:0009199 ! iridophore [Term] id: TAO:0005153 name: synovial joint def: "Is a joint that is located at the point of contact of articulating bones allowing movement. The joint has a capsule containing synovial fluid surrounding the articulating bone surfaces." [ZFIN:Curator] synonym: "diarthrodial joints" RELATED [] synonym: "diarthroses" EXACT [] is_a: TAO:0000367 ! joint [Term] id: TAO:0005154 name: synovial fluid def: "Portion of organism substance that is a clear fluid that occupies the space in synovial joints." [ZFIN:curator] is_a: TAO:0001487 ! portion of organism substance relationship: OBO_REL:part_of TAO:0005153 ! synovial joint [Term] id: TAO:0005155 name: cartilaginous joint is_a: TAO:0000367 ! joint [Term] id: TAO:0005156 name: fibrous joint def: "A joint where fibrous tissue such as ligament connects two calcified tissues." [ZFIN:curator] is_a: TAO:0000367 ! joint [Term] id: TAO:0005157 name: tela chorioidea tectal ventricle def: "Tela chorioidea that lines the tectal ventricle." [ZFIN:curator] synonym: "tela choroidea tectal ventricle" EXACT [] is_a: TAO:0000447 ! tela chorioidea relationship: OBO_REL:part_of TAO:0000159 ! tectal ventricle [Term] id: TAO:0005158 name: tela chorioidea fourth ventricle def: "Tela chorioidea that lines the fourth ventricle." [ZFIN:curator] synonym: "tela choroidea fourth ventricle" EXACT [] is_a: TAO:0000447 ! tela chorioidea relationship: OBO_REL:part_of TAO:0000110 ! fourth ventricle [Term] id: TAO:0005159 name: tela chorioidea third ventricle def: "Tela chorioidea that lines the third ventricle." [ZFIN:curator] synonym: "tela choroidea third ventricle" EXACT [] is_a: TAO:0000447 ! tela chorioidea relationship: OBO_REL:part_of TAO:0000161 ! third ventricle [Term] id: TAO:0005160 name: tela chorioidea telencephalic ventricle def: "Tela chorioidea that lines the telencephalic ventricle." [ZFIN:curator] synonym: "tela choroidea telencephalic ventricle" EXACT [] is_a: TAO:0000447 ! tela chorioidea relationship: OBO_REL:part_of TAO:0000696 ! telencephalic ventricle [Term] id: TAO:0005161 name: hepatic artery def: "Artery that supplies blood to the liver." [ZFIN:curator] is_a: TAO:0000005 ! artery relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005162 name: digestive system duct is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000339 ! digestive system [Term] id: TAO:0005163 name: bile canaliculus comment: Should be located in rather then part_of when we get the appropriate relation. is_a: TAO:0001668 ! anatomical space relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005164 name: bile ductule is_a: TAO:0005162 ! digestive system duct [Term] id: TAO:0005165 name: common bile duct def: "Digestive system duct that collects bile from the hepatic bile duct and the cystic duct." [ZFIN:Curator] is_a: TAO:0005162 ! digestive system duct relationship: OBO_REL:part_of TAO:0001100 ! hepatic duct [Term] id: TAO:0005166 name: cystic duct def: "Duct that connects the gall bladder and the common bile duct." [ZFIN:Curator] is_a: TAO:0005162 ! digestive system duct relationship: OBO_REL:part_of TAO:0000036 ! liver and biliary system [Term] id: TAO:0005167 name: hepatopancreatic ampulla def: "Ampulla formed by the union of the pancreatic duct and the common bile duct where they enter the intestine." [ZFIN:ZDB-PUB-070212-11, ZFIN:ZDB-PUB-080414-12] synonym: "ampulla of Vater" EXACT [] synonym: "papilla duodeni major" RELATED [] synonym: "papilla Vateri" EXACT [] is_a: TAO:0005162 ! digestive system duct relationship: OBO_REL:part_of TAO:0000339 ! digestive system [Term] id: TAO:0005168 name: central vein def: "Vein that is central to a lobule in the liver." [ZFIN:curator] is_a: TAO:0000082 ! vein relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005169 name: intrahepatic bile duct def: "Duct that collects bile from the bile ductules and connects to the extrahepatic bile duct." [ZFIN:curator] is_a: TAO:0005162 ! digestive system duct relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005170 name: extrahepatic duct def: "Bile duct that collects from the intrahepatic ducts and feeds into the common bile duct." [ZFIN:curator] is_a: TAO:0005162 ! digestive system duct relationship: OBO_REL:part_of TAO:0001100 ! hepatic duct [Term] id: TAO:0005171 name: duct is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0005172 name: left liver lobe def: "Portion of the liver which develops on the fish's left side." [ZFIN:curator] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005173 name: right liver lobe def: "Portion of the liver which develops on the fish's right side adjacent to the gall bladder." [ZFIN:curator] synonym: "2nd lobe" EXACT [] synonym: "gall bladder lobe" EXACT [] synonym: "second lobe" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005174 name: ventral liver lobe def: "Portion of the liver which develops on the fish's ventral side." [ZFIN:curator] synonym: "3rd lobe" EXACT [] synonym: "third lobe" EXACT [] relationship: OBO_REL:part_of TAO:0000123 ! liver [Term] id: TAO:0005175 name: CoPA def: "An interneuron in the spinal cord. CoPA are bipolar with \"T\" shaped dorsal dendrites, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-274, ZFIN:ZDB-PUB-961014-649] comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "primary commissural interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005176 name: CoSA def: "An interneuron of the spinal cord. CoSA, have contralateral longitudinal axons that crosses the cord dorsal to the Mauthner neuron and ascends in the dorsal cord." [ZFIN:ZDB-PUB-010807-17, ZFIN:ZDB-PUB-961014-649] comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "secondary commissural interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005177 name: VeLD comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "V2b interneuron" RELATED [] synonym: "ventral longitudinal interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005178 name: DoLA comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "dorsal longitudinal interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005179 name: MiP motor neuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle primary motoneuron" EXACT [] is_a: TAO:0009244 ! primary motor neuron [Term] id: TAO:0005180 name: RoP motor neuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "rostral primary motoneuron" EXACT [] is_a: TAO:0009244 ! primary motor neuron [Term] id: TAO:0005181 name: VaP motor neuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "variable primary motoneuron" EXACT [] is_a: TAO:0009244 ! primary motor neuron [Term] id: TAO:0005182 name: t-interneuron comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. is_a: TAO:0005209 ! hindbrain interneuron [Term] id: TAO:0005183 name: MiD2i comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 ipsilateral interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0005184 name: MiD2cl comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 contralateral llf interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0005185 name: MiD2cm comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL synonym: "middle dorsal 2 contralateral mlf interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0005186 name: CoB def: "A bifurcate interneuron. It is a commissural neuron with both ascending and descending axons in the ventrolateral cord contralateral to its cell body." [ZFIN:ZDB-PUB-961014-649] comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL.\n\nThis may be the same as CoBL synonym: "bifurcate commissural interneuron" EXACT [] is_a: TAO:0005231 ! bifurcate interneuron [Term] id: TAO:0005187 name: MiM1 synonym: "middle medial interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 [Term] id: TAO:0005188 name: MiR1 synonym: "middle rostral 1 interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 [Term] id: TAO:0005189 name: MiR2 synonym: "middle rostral 2 interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0005190 name: MiV1 synonym: "middle ventral 1 neuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 [Term] id: TAO:0005191 name: MiV2 synonym: "middle ventral 2 neuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000823 ! rhombomere 5 [Term] id: TAO:0005192 name: RoI2C synonym: "rostral intermediate 2 caudal interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005193 name: RoI2R synonym: "rostral intermediate 2 rostral interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005194 name: RoL1 comment: May have 12 neurons in each hemi rhombomere ZDB-PUB-060217-9\n7 neurons in each hemi rhombomere 080227-17 and 931014-770 synonym: "rostral lateral 1 interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 [Term] id: TAO:0005195 name: MiD3cl comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 contralateral llf interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 [Term] id: TAO:0005196 name: MiD3cm comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 contralateral mlf interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 [Term] id: TAO:0005197 name: MiD3i comment: This term entered TAO as a leaf node in the zebrafish AO and is not in the CL. synonym: "middle dorsal 3 ipsilateral interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000069 ! rhombomere 6 [Term] id: TAO:0005198 name: RoL2 synonym: "rostral lateral 2 interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005199 name: RoL2r synonym: "rostral lateral 2 rostral interneuron" EXACT [] is_a: TAO:0005198 ! RoL2 relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005200 name: RoL2c synonym: "rostral lateral 2 caudal interneuron" EXACT [] is_a: TAO:0005198 ! RoL2 relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005201 name: RoL3 synonym: "rostral lateral 3 interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 [Term] id: TAO:0005202 name: RoM1c synonym: "rostral medial 1 caudal interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 [Term] id: TAO:0005203 name: RoM1r synonym: "rostral medial 1 rostral interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0001031 ! rhombomere 1 [Term] id: TAO:0005204 name: rostral ventral 3 interneuron synonym: "RoV3" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 [Term] id: TAO:0005205 name: RoM2l synonym: "rostral medial 2 lateral interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005206 name: RoM2m synonym: "rostral medial 2 medial interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000822 ! rhombomere 2 [Term] id: TAO:0005207 name: RoM3l synonym: "rostral medial 3 lateral interneuron " EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 [Term] id: TAO:0005208 name: RoM3m synonym: "rostral medial 3 medial interneuron " RELATED [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000948 ! rhombomere 3 [Term] id: TAO:0005209 name: hindbrain interneuron is_a: TAO:0009191 ! CNS interneuron [Term] id: TAO:0005210 name: midbrain interneuron def: "CNS interneurons located in the midbrain." [ZFIN:Curator] is_a: TAO:0009191 ! CNS interneuron [Term] id: TAO:0005211 name: MeL synonym: "mesencephalon lateral interneuron" EXACT [] is_a: TAO:0005210 ! midbrain interneuron relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0005212 name: MeM synonym: "mesencephalon medial interneuron" EXACT [] is_a: TAO:0005210 ! midbrain interneuron relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0005213 name: MeLr synonym: "mesencephalon lateral rostral interneuron" EXACT [] is_a: TAO:0005210 ! midbrain interneuron relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0005214 name: MeLc synonym: "mesencephalon lateral caudal interneuron" EXACT [] is_a: TAO:0005210 ! midbrain interneuron relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0005215 name: MeLm synonym: "mesencephalon lateral medial interneuron" EXACT [] is_a: TAO:0005210 ! midbrain interneuron relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0005216 name: MeM1 synonym: "mesencephalon medial 1 interneuron" EXACT [] is_a: TAO:0005210 ! midbrain interneuron relationship: OBO_REL:part_of TAO:0000128 ! midbrain [Term] id: TAO:0005217 name: CaV def: "Hindbrain interneuron that is part of rhombomere 7, with 2 ventral neurons in each hemi-rhombomere." [ZFIN:ZDB-PUB-961014-770] synonym: "caudal ventral interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000949 ! rhombomere 7 [Term] id: TAO:0005218 name: CaD synonym: "caudal dorsal interneuron" EXACT [] is_a: TAO:0005209 ! hindbrain interneuron relationship: OBO_REL:part_of TAO:0000949 ! rhombomere 7 [Term] id: TAO:0005219 name: choroid plexus vascular circuit def: "Cranial vasculature where the posterior cerebral veins and the trans-choroid plexus branch form a circuit around the 4th ventricle choroid plexus." [ZFIN:ZDB-PUB-080908-11] synonym: "choroid vascular circuit" RELATED [] synonym: "CVC" EXACT [] is_a: TAO:0000099 ! brain vasculature relationship: OBO_REL:part_of TAO:0001443 ! choroid plexus [Term] id: TAO:0005220 name: larval melanophore stripe is_a: TAO:0001463 ! melanophore stripe [Term] id: TAO:0005221 name: dorsal larval melanophore stripe is_a: TAO:0005220 ! larval melanophore stripe [Term] id: TAO:0005222 name: ventral larval melanophore stripe is_a: TAO:0005220 ! larval melanophore stripe [Term] id: TAO:0005223 name: lateral larval melanophore stripe is_a: TAO:0005220 ! larval melanophore stripe [Term] id: TAO:0005224 name: yolk larval melanophore stripe is_a: TAO:0005220 ! larval melanophore stripe [Term] id: TAO:0005227 name: protoneuromast synonym: "immature neuromast" RELATED [] synonym: "proto neuromast" RELATED [] synonym: "proto-neuromast" RELATED [] is_a: TAO:0001478 ! anatomical cluster relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0005229 name: optic choroid is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000107 ! eye [Term] id: TAO:0005230 name: CoBL def: "A bifurcate interneuron where the axon projects ventrally, crossing the spinal cord ventral to the Mauthner axons before bifurcating and extending dorsally." [ZFIN:ZDB-PUB-010807-17] synonym: "commissural bifurcating longitudinal" EXACT [] is_a: TAO:0005231 ! bifurcate interneuron [Term] id: TAO:0005231 name: bifurcate interneuron is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005232 name: MCoD synonym: "multipolar commissural descending interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005233 name: CiD def: "A interneuron of the spinal cord with an ipsilateral axon that extends ventral to the Mauthner axon then turns dorsally and caudally and sometimes has a minor ascending branch." [ZFIN:ZDB-PUB-010807-17] synonym: "circumferential descending interneuron" EXACT [] synonym: "V2a interneuron" RELATED [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005234 name: CoLA def: "A spinal interneuron with a dorsal dendrite that extends caudally. CoLA also has midlateral process that extend rostrally and caudally, the axon crosses the cord dorsal to the Mauthner cell and ascends, extending dorsally. Axon has minor descending branch." [ZFIN:ZDB-PUB-010807-17] synonym: "commissural longitudinal ascending interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005235 name: UCoD synonym: "unipolar commissural descending interneuron" RELATED [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005236 name: basophilic erythroblast xref: CL:0000549 is_a: TAO:0005237 ! erythroblast [Term] id: TAO:0005237 name: erythroblast xref: CL:0000765 is_a: TAO:0009325 ! erythroid lineage cell [Term] id: TAO:0005238 name: juxtaglomerular cell xref: CL:0000648 is_a: TAO:0009118 ! smooth muscle cell relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0005239 name: micropylar cell synonym: "plug cell" EXACT [] is_a: TAO:0009000 ! cell relationship: OBO_REL:part_of TAO:0001110 ! ovarian follicle [Term] id: TAO:0005240 name: Kolmer-Agduhr neuron def: "Kolmer-Agduhr neurons are ciliated GABAergic neurons that contact the central canal of the spinal cord and have ipsilateral ascending axons." [ZFIN:ZDB-PUB-080825-21] synonym: "KA cell" EXACT [] synonym: "Kolmer-Agduhr cell" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005241 name: polychromatophilic erythroblast synonym: "intermediate erythroblast" EXACT [] synonym: "intermediate normoblast" RELATED [] synonym: "polychromatic erythroblast" EXACT [] synonym: "polychromatic normoblast" EXACT [] synonym: "polychromatophilic normoblast" RELATED [] synonym: "rubricyte" EXACT [] is_a: TAO:0005237 ! erythroblast [Term] id: TAO:0005242 name: multiciliated epithelial cell def: "A ciliated epithelial cell with many cilium." [CL:Curator] synonym: "multi-ciliated pithelial cell" EXACT [] xref: CL:0005012 is_a: TAO:0009035 ! ciliated epithelial cell [Term] id: TAO:0005243 name: single ciliated epithelial cell def: "Definition: A ciliated epithelial cell with a single cilium." [CL:curator] synonym: "single-ciliated epithelial cell" EXACT [] xref: CL:0005013 is_a: TAO:0009035 ! ciliated epithelial cell [Term] id: TAO:0005244 name: auditory epithelial support cell is_a: TAO:0009000 ! cell [Term] id: TAO:0005246 name: regeneration fibroblast def: "Is a fibroblast that differentiates from the de-differentiated cells of the blastema." [ZFIN:curator] synonym: "blastemal fibroblast" EXACT [] synonym: "blastemal fibroblasts" EXACT PLURAL [] is_a: TAO:0009026 ! fibroblast relationship: OBO_REL:part_of TAO:0005147 ! regenerating tissue [Term] id: TAO:0005247 name: CiA def: "Interneurons of the spinal cord that arise from the V1 proliferation domain. The CiA neurons inhibit motoneurons, other ventral interneurons and also inhibit dorsal sensory neurons involved in sensory gating,. CiA have ipsilateral axonal projections in both motor and sensory regions of spinal cord." [ZFIN:ZDB-PUB-040625-12, ZFIN:ZDB-PUB-060418-1] synonym: "circumferential ascending interneuron" EXACT [] is_a: TAO:0000778 ! interneuron spinal cord [Term] id: TAO:0005248 name: trans-choroid plexus branch synonym: "TCB" EXACT [] is_a: TAO:0000082 ! vein relationship: develops_from TAO:0005027 ! posterior cerebral vein relationship: OBO_REL:part_of TAO:0005219 ! choroid plexus vascular circuit [Term] id: TAO:0005249 name: vasculature is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000010 ! cardiovascular system [Term] id: TAO:0005250 name: capillary is_a: TAO:0005251 ! microcirculatory vessels relationship: OBO_REL:part_of TAO:0001079 ! blood vasculature [Term] id: TAO:0005251 name: microcirculatory vessels is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0005249 ! vasculature [Term] id: TAO:0005252 name: lymphatic capillary def: "Microvessel of the lymphatic system lined with a single layer of overlapping endothelial cells." [ZFIN:curator] is_a: TAO:0005251 ! microcirculatory vessels relationship: OBO_REL:part_of TAO:0005105 ! lymph vessel [Term] id: TAO:0005253 name: renal glomerular capsule epithelium def: "Simple squamous epithelium that lines the capsule of the renal glomerulus." [ZFIN:curator] synonym: "parietal epithelial layer" EXACT [] is_a: TAO:0001498 ! simple squamous epithelium relationship: OBO_REL:part_of TAO:0005254 ! renal glomerular capsule [Term] id: TAO:0005254 name: renal glomerular capsule synonym: "Bowman's capsule " EXACT [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0005281 ! renal corpuscle [Term] id: TAO:0005256 name: intervillus pockets def: "A portion of tissue formed between the base of the intestinal villi that is part of the intestinal epithelium where intestinal stem cells are located. In the intestine no crypts are present, but, the regions between the villi, the intervillus pockets, have a crypt-like function. Cells are produced in the intervillus pockets and shed from the villus tips." [ZFIN:ZDB-PUB-050209-3] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0005124 ! intestinal epithelium [Term] id: TAO:0005257 name: blood vessel endothelium is_a: TAO:0002171 ! vascular endothelium [Term] id: TAO:0005258 name: lymph vessel endothelium def: "The vascular endothelium that lines the lymph vessels." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0005105 ! lymph vessel [Term] id: TAO:0005259 name: continuous blood vessel endothelium def: "Blood vessel endothelium that has tight junctions between the endothelial cells." [ZFIN:curator] is_a: TAO:0005257 ! blood vessel endothelium [Term] id: TAO:0005260 name: fenestrated blood vessel endothelium def: "Blood vessel endothelium that has pores that allow passage small molecules and proteins." [ZFIN:curator] is_a: TAO:0005257 ! blood vessel endothelium [Term] id: TAO:0005261 name: sinusoidal blood vessel endothelium def: "Fenestrated blood vessel endothelium with pores that are large enough for blood cells to pass. The basal lamina and gap junctions may be discontinuous." [ZFIN:curator] is_a: TAO:0005260 ! fenestrated blood vessel endothelium [Term] id: TAO:0005262 name: caudal fin dorsal procurrent ray def: "Caudal procurrent ray that is dorsally located on the caudal fin skeleton." [TAO:curator] synonym: "dorsal procurrent caudal-fin ray" EXACT [] is_a: TAO:0001584 ! caudal procurrent ray [Term] id: TAO:0005263 name: caudal fin ventral caudal procurrent ray def: "Caudal procurrent ray that is ventrally located on the caudal fin skeleton." [TAO:curator] synonym: "ventral procurrent ray" EXACT [] is_a: TAO:0001584 ! caudal procurrent ray [Term] id: TAO:0005267 name: erector muscle def: "Muscle that moves parts of the body in a superior direction to an erect position. Antagonistic to depressor muscle." [ZFIN:curator] is_a: TAO:0005277 ! skeletal muscle [Term] id: TAO:0005270 name: depressor muscle def: "A muscle that moves body parts into an inferior direction or lowered position. Antagonistic to erector muscle." [ZFIN:curator] is_a: TAO:0005277 ! skeletal muscle [Term] id: TAO:0005271 name: flexor muscle def: "A muscle that decreases the angle of a joint." [ZFIN:curator] is_a: TAO:0005277 ! skeletal muscle [Term] id: TAO:0005272 name: immature gonad def: "Immature reproductive tissue that has not undergone final maturation into either testis or ovary. During gonadal development, the gonad may be transiently intersexual where there is a parallel presence of both oocytes and spermatocytes." [ZFIN:ZDB-PUB-070305-2] synonym: "juvenile gonad" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: develops_from TAO:0001262 ! gonad primordium relationship: OBO_REL:part_of TAO:0000632 ! reproductive system [Term] id: TAO:0005273 name: intestinal mucosal muscle def: "A thin layer of smooth muscle immediately beneath the base of the villi which permits the intestinal mucosa to dynamically move and fold." [ZFIN:ZDB-PUB-090217-11] synonym: "intestinal lamina muscularis mucosae" RELATED [http:www.vivo.colostate.edu/hbooks/pathphys/digestion/basics/gi_microanatomy.html] is_a: TAO:0005274 ! smooth muscle relationship: OBO_REL:part_of TAO:0001338 ! intestine [Term] id: TAO:0005274 name: smooth muscle def: "A non-striated muscle that is composed of spindle-shaped cells. Smooth muscle usually is organized into sheets that line cavitated organs." [ZFIN:curator] is_a: TAO:0005145 ! muscle [Term] id: TAO:0005276 name: inclinator muscle is_a: TAO:0005277 ! skeletal muscle [Term] id: TAO:0005277 name: skeletal muscle def: "Muscle, composed of long cylindrical, multinucleated cells that attaches to the skeleton via tendons." [ZFIN:curator] is_a: TAO:0005145 ! muscle [Term] id: TAO:0005279 name: enteric circular muscle def: "Smooth muscle of the enteric muscle system in which the cells are aligned perpendicular to the lumen of the gut." [ZFIN:curator] is_a: TAO:0005274 ! smooth muscle relationship: OBO_REL:part_of TAO:0001324 ! enteric musculature [Term] id: TAO:0005280 name: cardiac muscle is_a: TAO:0005145 ! muscle [Term] id: TAO:0005281 name: renal corpuscle def: "The part of the nephron that filters blood." [ZFIN:curator] synonym: "Malpighian corpuscle" EXACT [] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0002153 ! nephron [Term] id: TAO:0005283 name: renal capsular space def: "Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule." [ZFIN:curator] synonym: "Bowman's space" EXACT [] synonym: "inter-glomerular space" EXACT [] synonym: "urinary space" EXACT [] is_a: TAO:0001643 ! perichondrium relationship: OBO_REL:part_of TAO:0005281 ! renal corpuscle [Term] id: TAO:0005284 name: glomerular capillary def: "Capillary that is part of the renal glomerulus. Glomerular capillary endothelial membranes in zebrafish normally have a fenestrated morphology that is visible at the ultrastructural level." [ZFIN:curator, ZFIN:ZDB-PUB-000824-1] is_a: TAO:0005250 ! capillary relationship: OBO_REL:part_of TAO:0001288 ! renal glomeruli relationship: OBO_REL:part_of TAO:0005305 ! kidney vasculature [Term] id: TAO:0005285 name: glomerular basement membrane def: "Membrane between the mesonephric podocytes and the renal glomerular capillaries. It is a trilaminar structure composed of the fused basement membranes of the glomerular capillaries and basement membrane of the podocytes. The capillary membranes touch the GBM at contact points that are separated by pores. The membrane is semi-permeable allowing water and small molecules to pass into the renal capsular space." [ZFIN:ZDB-PUB-000824-1] synonym: "glomerular filtration membrane" EXACT [] is_a: TAO:0001485 ! basal lamina relationship: OBO_REL:part_of TAO:0001288 ! renal glomeruli [Term] id: TAO:0005286 name: lamina densa def: "Middle layer of the glomerular basement membrane." [ZFIN:curator] is_a: TAO:0000382 ! acellular anatomical structure relationship: OBO_REL:part_of TAO:0005285 ! glomerular basement membrane [Term] id: TAO:0005287 name: lamina rara interna def: "Layer of the glomerular basement membrane adjacent to the glomerular capillary." [ZFIN:curator] is_a: TAO:0000382 ! acellular anatomical structure relationship: OBO_REL:part_of TAO:0005285 ! glomerular basement membrane [Term] id: TAO:0005288 name: lamina rara externa def: "Layer of the glomerular basement membrane adjacent to the podocytes and capsular space." [ZFIN:curator] is_a: TAO:0000382 ! acellular anatomical structure relationship: OBO_REL:part_of TAO:0005285 ! glomerular basement membrane [Term] id: TAO:0005289 name: renal duct is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0005290 name: proximal convoluted tubule def: "Renal tubule that connects to the renal corpuscle." [ZFIN:curator] is_a: TAO:0005289 ! renal duct relationship: OBO_REL:part_of TAO:0001287 ! renal tubule [Term] id: TAO:0005291 name: proximal straight tubule def: "Portion of the renal tubule which is just posterior to the proximal convoluted tubule." [ZFIN:curator] is_a: TAO:0005289 ! renal duct relationship: OBO_REL:part_of TAO:0001287 ! renal tubule [Term] id: TAO:0005292 name: distal late tubule def: "Portion of the renal tubule which is just posterior to the distal early tubule." [ZFIN:curator] is_a: TAO:0005289 ! renal duct relationship: OBO_REL:part_of TAO:0001287 ! renal tubule [Term] id: TAO:0005293 name: distal early tubule def: "Portion of the renal tubule which is just posterior to the proximal straight tubule." [ZFIN:curator] is_a: TAO:0005289 ! renal duct relationship: OBO_REL:part_of TAO:0001287 ! renal tubule [Term] id: TAO:0005294 name: collecting duct def: "Renal duct that collects the output from renal tubules." [ZFIN:curator] is_a: TAO:0005289 ! renal duct [Term] id: TAO:0005295 name: axial blood vessel is_a: TAO:0001073 ! axial vasculature [Term] id: TAO:0005297 name: cranial blood vessel def: "Blood vessel part of cranial vasculature." [ZFIN:curator] is_a: TAO:0002137 ! blood vessel relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005298 name: cranial lymph vessel is_a: TAO:0005105 ! lymph vessel relationship: OBO_REL:part_of TAO:0001267 ! cranial vasculature [Term] id: TAO:0005299 name: fin blood vessel is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005300 name: fin lymph vessel is_a: TAO:0005095 ! fin vasculature [Term] id: TAO:0005301 name: pectoral fin blood vessel is_a: TAO:0005299 ! fin blood vessel relationship: OBO_REL:part_of TAO:0005096 ! pectoral fin vasculature [Term] id: TAO:0005302 name: pectoral fin lymph vessel is_a: TAO:0005300 ! fin lymph vessel relationship: OBO_REL:part_of TAO:0005096 ! pectoral fin vasculature [Term] id: TAO:0005303 name: caudal fin lymph vessel is_a: TAO:0005300 ! fin lymph vessel relationship: OBO_REL:part_of TAO:0005097 ! caudal fin vasculature relationship: OBO_REL:part_of TAO:0005105 ! lymph vessel [Term] id: TAO:0005304 name: caudal fin blood vessel is_a: TAO:0005299 ! fin blood vessel relationship: OBO_REL:part_of TAO:0005097 ! caudal fin vasculature [Term] id: TAO:0005305 name: kidney vasculature is_a: TAO:0005249 ! vasculature relationship: OBO_REL:part_of TAO:0000529 ! kidney [Term] id: TAO:0005306 name: kidney blood vessel is_a: TAO:0002137 ! blood vessel relationship: OBO_REL:part_of TAO:0005305 ! kidney vasculature [Term] id: TAO:0005309 name: pronephric glomerular capillary is_a: TAO:0005250 ! capillary relationship: OBO_REL:part_of TAO:0001557 ! pronephric glomerulus [Term] id: TAO:0005310 name: pronephric glomerular capsule synonym: "Bowman's capsule" EXACT [] is_a: TAO:0001477 ! portion of tissue relationship: OBO_REL:part_of TAO:0000151 ! pronephros [Term] id: TAO:0005311 name: pronephric glomerular capsule epithelium def: "Simple squamous epithelium that lines the capsule of the pronephric glomerulus." [ZFIN:curator] synonym: "pronephric parietal epithelial layer" EXACT [] is_a: TAO:0001498 ! simple squamous epithelium relationship: OBO_REL:part_of TAO:0005310 ! pronephric glomerular capsule [Term] id: TAO:0005312 name: pronephric capsular space def: "Space between the renal glomerulus and the glomerular capsule. Renal filtrate collects here then passes into the renal tubule." [ZFIN:curator] synonym: "Bowman¥s space" EXACT [] synonym: "inter-glomerular space" EXACT [] synonym: "urinary space" EXACT [] is_a: TAO:0001643 ! perichondrium relationship: OBO_REL:part_of TAO:0000151 ! pronephros [Term] id: TAO:0005313 name: pronephric glomerular basement membrane synonym: "jpronephric glomerular filtration membrane" EXACT [] is_a: TAO:0001485 ! basal lamina relationship: OBO_REL:part_of TAO:0001557 ! pronephric glomerulus [Term] id: TAO:0005315 name: venule def: "Multi-tissue structure part of the blood vasculature formed by the anastomosis of capillaries. Venules carry blood toward the heart." [ZFIN:curator] is_a: TAO:0002137 ! blood vessel relationship: OBO_REL:part_of TAO:0001079 ! blood vasculature [Term] id: TAO:0005316 name: fin fold pectoral fin bud def: "Fin fold of the pectoral fin bud, resulting from mesenchyme migration into the apical fold." [ZFIN:ZDB-PUB-001101-7, ZFIN:ZDB-PUB-990210-18] synonym: "fin membrane pectoral fin bud" RELATED [] relationship: develops_from TAO:0000085 ! apical ectodermal ridge pectoral fin bud relationship: OBO_REL:part_of TAO:0000141 ! pectoral fin bud [Term] id: TAO:0005317 name: pectoral fin fold relationship: develops_from TAO:0005316 ! fin fold pectoral fin bud relationship: OBO_REL:part_of TAO:0001161 ! pectoral fin [Term] id: TAO:0005318 name: lymph node relationship: OBO_REL:part_of TAO:0000385 ! lymphatic system [Term] id: TAO:0005319 name: intersegmental lymph vessel synonym: "islv" EXACT [] is_a: TAO:0005105 ! lymph vessel [Term] id: TAO:0005320 name: dorsal longitudinal lymphatic vessel synonym: "dllv" EXACT [] is_a: TAO:0005105 ! lymph vessel [Term] id: TAO:0005321 name: vascular smooth muscle is_a: TAO:0005274 ! smooth muscle relationship: OBO_REL:part_of TAO:0002137 ! blood vessel [Term] id: TAO:0005322 name: renal principal cell def: "A cuboidal epithelial cell of the kidney which regulates sodium and potassium balance. The activity of sodium and potassium channels on the cells apical membrane is regulated by aldosterone and vasopressin. In mammals these cells are located in the renal collecting ducts." [CL:curator] xref: CL:0005009 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell relationship: OBO_REL:part_of TAO:0001287 ! renal tubule [Term] id: TAO:0005323 name: ionocyte def: "Specialized epithelial cells involved in the maintenance of osmotic homeostasis. They are characterized by abundant mitochondria and ion transporters. In amniotes, they are present in the renal system. In freshwater fish, ionocytes in the skin and gills help maintain osmotic homeostasis by absorbing salt from the external environment." [ZFIN:ZDB-PUB-070625-18, ZFIN:ZDB-PUB-090310-19] xref: CL:0005006 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0005324 name: gill ionocyte def: "Ionocyte located in the gills" [ZFIN:curator] is_a: TAO:0005323 ! ionocyte relationship: OBO_REL:part_of TAO:0000354 ! gill [Term] id: TAO:0005325 name: integument ionocyte def: "Ionocyte located in the integument during embryonic and larval stages." [ZFIN:curator] synonym: "extrabranchial ionocyte" RELATED [] synonym: "skin ionocyte" EXACT [] is_a: TAO:0005323 ! ionocyte relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0005326 name: NaK ionocyte def: "Integument ionocyte rich in Na,K-ATPase." [ZFIN:curator] synonym: "NaK-MRC" RELATED [] synonym: "NaR cell" RELATED [] is_a: TAO:0005325 ! integument ionocyte relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0005327 name: vH ionocyte def: "Integument ionocyte rich in vacuolar-type H+ ATPase and carbonic anhydrase" [ZFIN:curator] synonym: "HR cell" RELATED [] synonym: "VH-MRC" RELATED [] is_a: TAO:0005325 ! integument ionocyte relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0005328 name: iridoblast def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an iridophore." [CL:curator] xref: CL:0005001 is_a: TAO:0009000 ! cell relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0005329 name: leucoblast def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a leucophore" [CL:curator] xref: CL:0005003 is_a: TAO:0009000 ! cell relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0005331 name: pigment erythroblast def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into an erythrophore" [CL:curator] xref: CL:0005004 is_a: TAO:0009000 ! cell relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0005332 name: cyanoblast def: "A non-terminally differentiated cell that originates from the neural crest and differentiates into a cyanophore" [CL:curator] xref: CL:0005005 is_a: TAO:0009000 ! cell relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0005333 name: tongue is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000547 ! mouth [Term] id: TAO:0005334 name: lip epithelium def: "The thick, high squamous-stratified epithelium that covers the lips. It contains abundant melanocytes, many mucous cells and has well differentiated taste buds." [ZFIN:ZDB-PUB-060921-12] is_a: TAO:0001486 ! epithelium relationship: OBO_REL:part_of TAO:0007006 ! lip [Term] id: TAO:0005335 name: swim bladder bud is_a: TAO:0001105 ! embryonic structure relationship: develops_from TAO:0005336 ! presumptive swim bladder [Term] id: TAO:0005336 name: presumptive swim bladder is_a: TAO:0001116 ! presumptive structure relationship: OBO_REL:part_of TAO:0000112 ! gut [Term] id: TAO:0005338 name: posterior recess def: "Posterior protrusion of the third ventricle." [ZFIN:curator] synonym: "posterior recess of diencephalic ventricle" EXACT [] relationship: OBO_REL:part_of TAO:0000161 ! third ventricle [Term] id: TAO:0005339 name: nucleus of the lateral recess is_a: TAO:0002191 ! diencephalic nucleus relationship: OBO_REL:part_of TAO:0000324 ! caudal periventricular hypothalamus [Term] id: TAO:0005340 name: nucleus of the posterior recess is_a: TAO:0002191 ! diencephalic nucleus relationship: OBO_REL:part_of TAO:0000324 ! caudal periventricular hypothalamus [Term] id: TAO:0005341 name: medial longitudinal catecholaminergic tract synonym: "mlct" EXACT [] is_a: TAO:0000145 ! CNS tracts and commissures [Term] id: TAO:0005343 name: endohypothalamic tract def: "CNS white matter, axonal tract interconnecting catecholaminergic cell groups in the posterior tuberculum and hypothalamus." [ZFIN:ZDB-PUB-091221-28] is_a: TAO:0000145 ! CNS tracts and commissures [Term] id: TAO:0005344 name: preopticohypothalamic tract is_a: TAO:0000145 ! CNS tracts and commissures [Term] id: TAO:0005346 name: extrapancreatic duct def: "Portion of the pancreatic duct, external to the pancreas body that connects the pancreas with the hepatopancreatic ampulla." [ZFIN:ZDB-PUB-050623-3] is_a: TAO:0005162 ! digestive system duct relationship: OBO_REL:part_of TAO:0001372 ! pancreatic duct [Term] id: TAO:0005365 name: dorsal fin pterygiophore 2 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005366 name: dorsal fin pterygiophore 3 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005367 name: dorsal fin pterygiophore 4 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005368 name: dorsal fin pterygiophore 5 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005369 name: dorsal fin pterygiophore 6 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005370 name: dorsal fin pterygiophore 7 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005371 name: dorsal fin pterygiophore 8 is_a: TAO:0001419 ! dorsal fin pterygiophore [Term] id: TAO:0005372 name: dorsal fin distal radial 1 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0002094 ! dorsal fin pterygiophore 1 [Term] id: TAO:0005373 name: dorsal fin distal radial 2 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005365 ! dorsal fin pterygiophore 2 [Term] id: TAO:0005374 name: dorsal fin distal radial 3 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005366 ! dorsal fin pterygiophore 3 [Term] id: TAO:0005375 name: dorsal fin distal radial 4 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005367 ! dorsal fin pterygiophore 4 [Term] id: TAO:0005376 name: dorsal fin distal radial 5 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005368 ! dorsal fin pterygiophore 5 [Term] id: TAO:0005377 name: dorsal fin distal radial 6 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005369 ! dorsal fin pterygiophore 6 [Term] id: TAO:0005378 name: dorsal fin distal radial 7 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005370 ! dorsal fin pterygiophore 7 [Term] id: TAO:0005379 name: dorsal fin distal radial 8 is_a: TAO:0000936 ! dorsal fin distal radial relationship: OBO_REL:part_of TAO:0005371 ! dorsal fin pterygiophore 8 [Term] id: TAO:0005380 name: dorsal fin proximal radial 3 is_a: TAO:0000947 ! dorsal fin proximal radial relationship: OBO_REL:part_of TAO:0005366 ! dorsal fin pterygiophore 3 [Term] id: TAO:0005381 name: dorsal fin proximal radial 4 is_a: TAO:0000947 ! dorsal fin proximal radial relationship: OBO_REL:part_of TAO:0005367 ! dorsal fin pterygiophore 4 [Term] id: TAO:0005382 name: dorsal fin proximal radial 5 is_a: TAO:0000947 ! dorsal fin proximal radial relationship: OBO_REL:part_of TAO:0005368 ! dorsal fin pterygiophore 5 [Term] id: TAO:0005383 name: dorsal fin proximal radial 6 is_a: TAO:0000947 ! dorsal fin proximal radial relationship: OBO_REL:part_of TAO:0005369 ! dorsal fin pterygiophore 6 [Term] id: TAO:0005384 name: dorsal fin proximal radial 7 is_a: TAO:0000947 ! dorsal fin proximal radial relationship: OBO_REL:part_of TAO:0005370 ! dorsal fin pterygiophore 7 [Term] id: TAO:0005385 name: dorsal fin proximal radial 8 is_a: TAO:0000947 ! dorsal fin proximal radial relationship: OBO_REL:part_of TAO:0005371 ! dorsal fin pterygiophore 8 [Term] id: TAO:0005409 name: pars superior ear def: "The dorsal part of the ear. Comprises the three semicircular canals, which connect to the utricle." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0005410 name: pars inferior ear def: "The ventral portion of the ear. It contains the saccule and the laguena which are the primary auditory organs." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0005411 name: common crus is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0005409 ! pars superior ear [Term] id: TAO:0005412 name: transverse canal def: "Duct that crosses the midline connecting the sacculi." [ZFIN:curator] is_a: TAO:0005171 ! duct relationship: OBO_REL:part_of TAO:0001138 ! vestibuloauditory system [Term] id: TAO:0005413 name: perilymph is_a: TAO:0001487 ! portion of organism substance [Term] id: TAO:0005414 name: endolymph is_a: TAO:0001487 ! portion of organism substance [Term] id: TAO:0005415 name: inner ear foramen def: "Foramen in the inner ear." [ZFIN:curator] is_a: TAO:0001736 ! foramen relationship: OBO_REL:part_of TAO:0000217 ! inner ear [Term] id: TAO:0005416 name: sacculoagenar foramen is_a: TAO:0005415 ! inner ear foramen [Term] id: TAO:0005425 name: serous membrane def: "A multi-tissue structure that is comprised of a secretory epithelial layer and a connective tissue layer." [http://en.wikipedia.org/wiki/Serous_membrane] is_a: TAO:0001488 ! multi-tissue structure [Term] id: TAO:0006000 name: intermediate hypothalamus def: "Brain structure that lies perpendicular to the longitudinal axis of the embryonic neural tube, is continuous with the rostral hypothalamic proliferation and whose most lateral extent is deflected dorsally within the inferior lobe." [ZFIN:ZDB-PUB-001018-1, ZFIN:ZDB-PUB-020730-6, ZFIN:ZDB-PUB-081114-19] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000032 ! hypothalamus [Term] id: TAO:0007000 name: macula saccule synonym: "saccular macula" EXACT [] is_a: TAO:0000386 ! macula relationship: develops_from TAO:0000558 ! posterior macula relationship: OBO_REL:part_of TAO:0000428 ! saccule [Term] id: TAO:0007001 name: dorso-rostral cluster def: "Early-forming telencephalic neural cluster. Neurons of the dorso-rostral cluster (drc) extend axons to form the supra-optic tract (SOT) and the anterior commissure (AC). Ross et al., 1992." [ZFIN:curator] synonym: "dorsorostral cluster" EXACT [] synonym: "drc" EXACT [] relationship: OBO_REL:part_of TAO:0000079 ! telencephalon [Term] id: TAO:0007002 name: ventro-rostral cluster def: "Early-forming neural cluster located in the rostral diencephalon. At 19 h, axons arising from the vrc grow caudally to pioneer the tract of the postoptic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] synonym: "ventrorostral cluster" EXACT [] synonym: "vrc" EXACT [] relationship: OBO_REL:part_of TAO:0000101 ! diencephalon [Term] id: TAO:0007003 name: ventro-caudal cluster def: "Early-forming neural cluster of the ventral midbrain. At 16 h, axons of the vcc grow caudally to pioneer the medial longitudinal fasciculus (MLF), which is part of the larger ventral longitudinal tract (VLT). Later, neurons from this cluster project axons rostrally into the tract of the post-optic commissure (TPOC). Ross et al., 1992." [ZFIN:curator] synonym: "vcc" EXACT [] synonym: "ventrocaudal cluster" EXACT [] is_a: TAO:0000128 ! midbrain [Term] id: TAO:0007004 name: epiphysial cluster def: "Early-developing neuronal cluster of the epiphysis. By 24 hpf the pioneer axon of the dorsoventral diencephalic tract (DVDT) has arisen from the ec and grown ventrally. As this axon encounters axons of the TPOC, it makes a near-90 rostral turn and grows rostrally among axons of the TPOC growing in the opposite direction. Ross et al., 1992." [ZFIN:curator] synonym: "ec" EXACT [] relationship: OBO_REL:part_of TAO:0000019 ! epiphysis [Term] id: TAO:0007005 name: hemal prezygapophysis alt_id: TAO:0001380 def: "Hemal prezygapophyses are paired, anteromedially directed processes arising from the bases of hemal arches, ligamentously joined to the hemal postzygapophyses of the preceding vertebra. Posterior caudal vertebrae close to the caudal fin lack hemal prezygopophyses." [ZFIN:curator] synonym: "haemal prezygapophysis" EXACT [] synonym: "hemal prezygopophysis" EXACT [] is_a: TAO:0001591 ! endochondral bone relationship: OBO_REL:part_of TAO:0000519 ! hemal arch [Term] id: TAO:0007006 name: lip def: "Surface structure that is one of the two fleshy folds surrounding the opening of the mouth." [http:www.medterms.com/script/main/art.asp?articlekey=9458, ZFIN:curator] synonym: "lips" EXACT PLURAL [] is_a: TAO:0000292 ! surface structure relationship: OBO_REL:part_of TAO:0000547 ! mouth [Term] id: TAO:0007007 name: pallium def: "The mantle of gray matter forming the cerebral cortex. http://www.thefreedictionary.com/pallium" [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000008 ! brain [Term] id: TAO:0007008 name: ventral intermandibularis anterior synonym: "ventral intermandibulari anterior" EXACT PLURAL [] is_a: TAO:0005145 ! muscle relationship: develops_from TAO:0000369 ! intermandibularis [Term] id: TAO:0007009 name: nerve def: "A portion of tissue which is a fasiculated group of axons." [ZFIN:curator] is_a: TAO:0001477 ! portion of tissue [Term] id: TAO:0007010 name: eminentia thalami def: "Part of the forebrain that is ventral to the ventral thalamus and dorsal to the preoptic area. See page 44 of the Atlas of Early Zebrafish Brain Development." [ZFIN:curator] relationship: OBO_REL:part_of TAO:0000109 ! forebrain [Term] id: TAO:0007011 name: vagal root def: "Part of cranial nerve X." [ZFIN:curator] synonym: "rX" EXACT [] synonym: "vagus root" EXACT [] relationship: OBO_REL:part_of TAO:0000453 ! cranial nerve X [Term] id: TAO:0007012 name: lateral forebrain bundle is_a: TAO:0000145 ! CNS tracts and commissures [Term] id: TAO:0007013 name: preplacodal ectoderm def: "Non neural ectoderm that surrounds the presumptive neural plate and gives rise to neurogenic placodes." [ZFIN:curator] is_a: TAO:0001178 ! non neural ectoderm [Term] id: TAO:0007014 name: anterior presumptive neural plate relationship: OBO_REL:part_of TAO:0000063 ! presumptive neural plate [Term] id: TAO:0007015 name: posterior presumptive neural plate relationship: OBO_REL:part_of TAO:0000063 ! presumptive neural plate [Term] id: TAO:0007016 name: anterior neural plate relationship: develops_from TAO:0007014 ! anterior presumptive neural plate relationship: OBO_REL:part_of TAO:0000132 ! neural plate [Term] id: TAO:0007017 name: posterior neural plate relationship: develops_from TAO:0007015 ! posterior presumptive neural plate relationship: OBO_REL:part_of TAO:0000132 ! neural plate [Term] id: TAO:0007018 name: forebrain neural plate relationship: develops_from TAO:0000062 ! presumptive forebrain relationship: OBO_REL:part_of TAO:0007016 ! anterior neural plate [Term] id: TAO:0007019 name: midbrain neural plate relationship: develops_from TAO:0000148 ! presumptive midbrain relationship: OBO_REL:part_of TAO:0007016 ! anterior neural plate [Term] id: TAO:0007020 name: forebrain midbrain boundary neural plate relationship: develops_from TAO:0001368 ! presumptive forebrain midbrain boundary relationship: OBO_REL:part_of TAO:0007016 ! anterior neural plate [Term] id: TAO:0007021 name: spinal cord neural plate relationship: develops_from TAO:0000417 ! presumptive spinal cord relationship: OBO_REL:part_of TAO:0007017 ! posterior neural plate [Term] id: TAO:0007022 name: hindbrain neural plate relationship: develops_from TAO:0000569 ! presumptive hindbrain relationship: OBO_REL:part_of TAO:0007017 ! posterior neural plate [Term] id: TAO:0007023 name: posterior neural keel relationship: develops_from TAO:0007017 ! posterior neural plate relationship: OBO_REL:part_of TAO:0000131 ! neural keel [Term] id: TAO:0007024 name: anterior neural keel relationship: develops_from TAO:0007016 ! anterior neural plate relationship: OBO_REL:part_of TAO:0000131 ! neural keel [Term] id: TAO:0007025 name: midbrain neural keel relationship: develops_from TAO:0007019 ! midbrain neural plate relationship: OBO_REL:part_of TAO:0007024 ! anterior neural keel [Term] id: TAO:0007026 name: forebrain neural keel relationship: develops_from TAO:0007018 ! forebrain neural plate relationship: OBO_REL:part_of TAO:0007024 ! anterior neural keel [Term] id: TAO:0007027 name: forebrain midbrain boundary neural keel relationship: develops_from TAO:0007020 ! forebrain midbrain boundary neural plate relationship: OBO_REL:part_of TAO:0007024 ! anterior neural keel [Term] id: TAO:0007028 name: spinal cord neural keel relationship: OBO_REL:part_of TAO:0007023 ! posterior neural keel [Term] id: TAO:0007029 name: hindbrain neural keel relationship: develops_from TAO:0007022 ! hindbrain neural plate relationship: OBO_REL:part_of TAO:0007023 ! posterior neural keel [Term] id: TAO:0007030 name: posterior neural rod relationship: develops_from TAO:0007023 ! posterior neural keel relationship: OBO_REL:part_of TAO:0000133 ! neural rod [Term] id: TAO:0007031 name: anterior neural rod relationship: develops_from TAO:0007024 ! anterior neural keel relationship: OBO_REL:part_of TAO:0000133 ! neural rod [Term] id: TAO:0007032 name: midbrain neural rod relationship: develops_from TAO:0007025 ! midbrain neural keel relationship: OBO_REL:part_of TAO:0007031 ! anterior neural rod [Term] id: TAO:0007033 name: forebrain midbrain boundary neural rod relationship: develops_from TAO:0007027 ! forebrain midbrain boundary neural keel relationship: OBO_REL:part_of TAO:0007031 ! anterior neural rod [Term] id: TAO:0007034 name: forebrain neural rod relationship: develops_from TAO:0007026 ! forebrain neural keel relationship: OBO_REL:part_of TAO:0007031 ! anterior neural rod [Term] id: TAO:0007035 name: spinal cord neural rod relationship: OBO_REL:part_of TAO:0007030 ! posterior neural rod [Term] id: TAO:0007036 name: hindbrain neural rod relationship: develops_from TAO:0007029 ! hindbrain neural keel relationship: OBO_REL:part_of TAO:0007030 ! posterior neural rod [Term] id: TAO:0007037 name: posterior neural tube relationship: develops_from TAO:0007030 ! posterior neural rod relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0007038 name: anterior neural tube relationship: develops_from TAO:0007031 ! anterior neural rod relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0007039 name: midbrain neural tube relationship: develops_from TAO:0007032 ! midbrain neural rod relationship: OBO_REL:part_of TAO:0007038 ! anterior neural tube [Term] id: TAO:0007040 name: forebrain midbrain boundary neural tube relationship: develops_from TAO:0007033 ! forebrain midbrain boundary neural rod relationship: OBO_REL:part_of TAO:0007038 ! anterior neural tube [Term] id: TAO:0007041 name: forebrain neural tube relationship: develops_from TAO:0007034 ! forebrain neural rod relationship: OBO_REL:part_of TAO:0007038 ! anterior neural tube [Term] id: TAO:0007042 name: spinal cord neural tube relationship: OBO_REL:part_of TAO:0007037 ! posterior neural tube [Term] id: TAO:0007043 name: hindbrain neural tube relationship: develops_from TAO:0007036 ! hindbrain neural rod relationship: OBO_REL:part_of TAO:0007037 ! posterior neural tube [Term] id: TAO:0007044 name: midbrain hindbrain boundary neural plate relationship: develops_from TAO:0001187 ! presumptive midbrain hindbrain boundary relationship: OBO_REL:part_of TAO:0000132 ! neural plate [Term] id: TAO:0007045 name: midbrain hindbrain boundary neural keel relationship: develops_from TAO:0007044 ! midbrain hindbrain boundary neural plate relationship: OBO_REL:part_of TAO:0000131 ! neural keel [Term] id: TAO:0007046 name: midbrain hindbrain boundary neural rod relationship: develops_from TAO:0007045 ! midbrain hindbrain boundary neural keel relationship: OBO_REL:part_of TAO:0000133 ! neural rod [Term] id: TAO:0007047 name: midbrain hindbrain boundary neural tube relationship: develops_from TAO:0007046 ! midbrain hindbrain boundary neural rod relationship: OBO_REL:part_of TAO:0001135 ! neural tube [Term] id: TAO:0007048 name: ventral intermandibularis posterior synonym: "ventral intermandibulari posterior" EXACT PLURAL [] is_a: TAO:0005145 ! muscle relationship: develops_from TAO:0000369 ! intermandibularis [Term] id: TAO:0007049 name: adductor mandibulae synonym: "dorsal adductor mandibulae" EXACT [] is_a: TAO:0000236 ! mandibular muscle relationship: OBO_REL:part_of TAO:0000236 ! mandibular muscle [Term] id: TAO:0007050 name: constrictor dorsalis is_a: TAO:0000236 ! mandibular muscle [Term] id: TAO:0007051 name: ventral interhyoideus synonym: "ventral interhyoidei" EXACT PLURAL [] is_a: TAO:0000521 ! hyoid muscle [Term] id: TAO:0007052 name: hyohyoideus def: "Is a hyoid muscle that inserts at the most anterior basibranchial and also at the posterior ends of the ceratohyals and functions in jaw closure." [ZFIN:ZDB-PUB-020703-2] is_a: TAO:0000521 ! hyoid muscle [Term] id: TAO:0007053 name: dorsal adductor hyomandibulae def: "Is a hyoid muscle that attaches to the dorsomedial faces of the hyosymplectics." [ZFIN:ZDB-PUB-020703-2] is_a: TAO:0000521 ! hyoid muscle [Term] id: TAO:0007054 name: pillar of the anterior semicircular canal synonym: "anterior hub of the semicircular canal" EXACT [] synonym: "anterior pillar" EXACT [] synonym: "anterior pillar of the semicircular canal" EXACT [] synonym: "horizontal hub" RELATED [] is_a: TAO:0002223 ! pillar of the semicircular canal relationship: develops_from TAO:0000232 ! lateral semicircular canal primordium relationship: develops_from TAO:0000469 ! anterior semicircular canal primordium relationship: OBO_REL:part_of TAO:0000314 ! anterior semicircular canal [Term] id: TAO:0007055 name: pillar of the lateral semicircular canal synonym: "lateral hub of the semicircular canal" EXACT [] synonym: "ventral bar" EXACT [] synonym: "ventral pillar" EXACT [] synonym: "ventral piller of the semicircular canal" EXACT [] is_a: TAO:0002223 ! pillar of the semicircular canal relationship: develops_from TAO:0001716 ! caudal principal ray 4 relationship: OBO_REL:part_of TAO:0000220 ! lateral semicircular canal [Term] id: TAO:0007057 name: ocular blood vessel synonym: "eye vasculature" EXACT [] synonym: "ocular vasculature" RELATED [] synonym: "optic vasculature" EXACT [] is_a: TAO:0005297 ! cranial blood vessel [Term] id: TAO:0007058 name: roof plate def: "Multi-tissue structure that is the dorsal-most aspect of the devleloping neural tube." [ZFIN:curator] is_a: TAO:0001488 ! multi-tissue structure relationship: OBO_REL:part_of TAO:0000012 ! central nervous system [Term] id: TAO:0007059 name: neurogenic field relationship: develops_from TAO:0007013 ! preplacodal ectoderm [Term] id: TAO:0007060 name: dorsolateral field is_a: TAO:0007059 ! neurogenic field [Term] id: TAO:0007061 name: epibranchial field is_a: TAO:0007059 ! neurogenic field [Term] id: TAO:0007062 name: olfactory field synonym: "olfactory fields" EXACT PLURAL [] is_a: TAO:0007059 ! neurogenic field [Term] id: TAO:0007063 name: neural crest hindbrain def: "Cranial neural crest that is part of the hindbrain." [ZFIN:curator] synonym: "rhombencephalic neural crest" EXACT [] is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0007064 name: mandibular neural crest is_a: TAO:0001194 ! cranial neural crest relationship: OBO_REL:part_of TAO:0007063 ! neural crest hindbrain [Term] id: TAO:0007065 name: hyoid neural crest def: "Cranial neural crest that migrates into the hyoid arch." [ZFIN:ZDB-PUB-061108-6] is_a: TAO:0001194 ! cranial neural crest relationship: OBO_REL:part_of TAO:0007063 ! neural crest hindbrain [Term] id: TAO:0007066 name: glossopharyngeal neural crest def: "Cranial neural crest which gives rise to the glossopharyngeal ganglion." [ZFIN:curator] is_a: TAO:0001194 ! cranial neural crest [Term] id: TAO:0007067 name: vagal ganglion synonym: "gX" EXACT [] xref: ZFIN:curator is_a: TAO:0001555 ! epibranchial ganglion [Term] id: TAO:0009000 name: cell def: "Minute protoplasmic masses that make up organized tissue, usually consisting of a nucleus which is surrounded by protoplasm which contains the various organelles and is enclosed in the cell or plasma membrane. Cells are the fundamental, structural, and functional units of living organisms." [CL:curator] xref: CARO:0000013 xref: CL:0000000 is_a: TAO:0000037 ! anatomical structure relationship: OBO_REL:part_of TAO:0001094 ! body [Term] id: TAO:0009001 name: receptor cell (sensu Animalia) xref: CL:0000006 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009002 name: early embryonic cell xref: CL:0000007 is_a: TAO:0009000 ! cell [Term] id: TAO:0009003 name: cranial neural crest cell xref: CL:0000008 is_a: TAO:0009165 ! neural crest cell [Term] id: TAO:0009004 name: trunk neural crest cell xref: CL:0000011 is_a: TAO:0009165 ! neural crest cell [Term] id: TAO:0009005 name: spermatocyte def: "A male germ cell that develops from spermatogonia. The euploid primary spermatocytes undergo meiosis and give rise to the haploid secondary spermatocytes which in turn give rise to spermatids." [CL:curator] xref: CL:0000017 is_a: TAO:0009000 ! cell relationship: develops_from TAO:0001337 ! spermatogonia relationship: OBO_REL:part_of TAO:0000598 ! testis [Term] id: TAO:0009006 name: sperm def: "A mature male germ cell that develops from a spermatid." [CL:curator] synonym: "sperm cell" EXACT [] synonym: "spermatozoid" EXACT [] synonym: "spermatozoon" EXACT [] xref: CL:0000019 is_a: TAO:0009000 ! cell [Term] id: TAO:0009007 name: spermatogonium def: "An euploid male germ cell of an early stage of spermatogenesis." [CL:curator] xref: CL:0000020 is_a: TAO:0009000 ! cell [Term] id: TAO:0009008 name: egg synonym: "ovum" EXACT [] xref: CL:0000025 is_a: TAO:0009000 ! cell [Term] id: TAO:0009009 name: neuron neural crest derived xref: CL:0000029 relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0009010 name: glioblast xref: CL:0000030 relationship: develops_from TAO:0001120 ! neuroectoderm relationship: develops_from TAO:0009080 ! neurectodermal cell [Term] id: TAO:0009011 name: neuroblast xref: CL:0000031 is_a: TAO:0009019 ! neuronal stem cell [Term] id: TAO:0009012 name: neuroplacodal cell xref: CL:0000032 is_a: TAO:0009000 ! cell [Term] id: TAO:0009013 name: single fate stem cell xref: CL:0000035 is_a: TAO:0009307 ! somatic stem cell [Term] id: TAO:0009014 name: hematopoietic stem cell def: "A stem cell from which all cells of the lymphoid and myeloid lineages develop, including blood cells and cells of the immune system." [CL:curator] synonym: "colony forming unit hematopoietic" EXACT [] synonym: "hematopoietic progenitor cell" EXACT [] synonym: "hemopoietic progenitor cell" EXACT [] synonym: "hemopoietic stem cell" EXACT [] synonym: "HSC" EXACT [] xref: CL:0000037 is_a: TAO:0009020 ! multi fate stem cell relationship: develops_from TAO:0009258 ! angioblastic mesenchymal cell relationship: OBO_REL:part_of TAO:0005023 ! hematopoietic system [Term] id: TAO:0009015 name: erythroid progenitor cell def: "A progenitor cell committed to the erythroid lineage." [ZFIN:ZDB-PUB-070221-1] synonym: "BFU-E" EXACT [] synonym: "blast forming unit erythroid" EXACT [] synonym: "burst forming unit erythroid" EXACT [] synonym: "CFU-E" EXACT [] synonym: "colony forming unit erythroid" EXACT [] synonym: "erythroid stem cell" EXACT [] xref: CL:0000038 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009022 ! megakaryocyte erythroid progenitor cell [Term] id: TAO:0009016 name: germ line cell xref: CL:0000039 is_a: TAO:0009000 ! cell [Term] id: TAO:0009017 name: monoblast def: "A progenitor cell committed to the monocyte lineage. http://www.copewithcytokines.de" [CL:curator] synonym: "CFU-M" EXACT [] synonym: "colony forming unit macrophage" EXACT [] synonym: "monocyte stem cell" EXACT [] xref: CL:0000040 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009251 ! granulocyte monocyte progenitor cell [Term] id: TAO:0009018 name: neutrophilic myeloblast def: "A myeloblast committed to the neutrophil lineage. A myeloblast is the most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm." [ZFIN:ZDB-PUB-070221-1] synonym: "myeloblast" EXACT [] synonym: "neutrophilic granuloblast" EXACT [] xref: CL:0000042 is_a: TAO:0009353 ! myeloblast relationship: develops_from TAO:0009352 ! neutrophil progenitor cell [Term] id: TAO:0009019 name: neuronal stem cell xref: CL:0000047 is_a: TAO:0009020 ! multi fate stem cell relationship: develops_from TAO:0009080 ! neurectodermal cell [Term] id: TAO:0009020 name: multi fate stem cell def: "A stem cell that can give rise to mulitple lineages of cells." [CL:curator] synonym: "multipotent stem cell" EXACT [] xref: CL:0000048 is_a: TAO:0009307 ! somatic stem cell [Term] id: TAO:0009021 name: common myeloid progenitor def: "A progenitor cell committed to myeloid lineage, including the megakaryocyte and erythroid lineages." [ZFIN:ZDB-PUB-070221-2] synonym: "cfu-gemm" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "CFU-S" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "CMP" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "colony forming unit granulocyte, erythrocyte, macrophage, and megakaryocyte" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "multipotential myeloid stem cell" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "myeloid stem cell" EXACT [ZFIN:ZDB-PUB-070221-2] synonym: "pluripotent stem cell (bone marrow)" EXACT [ZFIN:ZDB-PUB-070221-2] xref: CL:0000049 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009014 ! hematopoietic stem cell [Term] id: TAO:0009022 name: megakaryocyte erythroid progenitor cell def: "A progenitor cell committed to the megakaryocyte and erythroid lineages." [CL:curator] synonym: "CFU-EM" EXACT [] synonym: "colony forming unit erythroid megakaryocyte" EXACT [] synonym: "MEP" EXACT [] xref: CL:0000050 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009021 ! common myeloid progenitor [Term] id: TAO:0009023 name: common lymphocyte progenitor def: "A progenitor cell committed to the lymphoid lineage." [CL:curator] synonym: "CLP" EXACT [] synonym: "committed lymphopoietic stem cell" EXACT [] synonym: "early lymphocyte progenitor" EXACT [] synonym: "ELP" EXACT [] synonym: "lymphoblast" EXACT [] synonym: "lymphoid stem cell" EXACT [] synonym: "lymphopoietic stem cell" EXACT [] xref: CL:0000051 is_a: TAO:0009355 ! lymphoid progenitor cell relationship: develops_from TAO:0009014 ! hematopoietic stem cell [Term] id: TAO:0009024 name: totipotent stem cell def: "A stem cell from which all cells of the body can form." [CL:curator] xref: CL:0000052 is_a: TAO:0009307 ! somatic stem cell [Term] id: TAO:0009025 name: myoblast def: "An embryonic (precursor) cell of the myogenic lineage that develops from the mesoderm. They undergo proliferation, migrate to their various sites, and then differentiate into the appropriate form of myocytes." [CL:curator] xref: CL:0000056 relationship: develops_from TAO:0009179 ! muscle stem cell [Term] id: TAO:0009026 name: fibroblast def: "A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules." [CL:curator] xref: CL:0000057 relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009027 name: chondroblast xref: CL:0000058 relationship: develops_from TAO:0000041 ! mesoderm relationship: develops_from TAO:0009081 ! mesenchymal cell relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009028 name: ameloblast def: "A cylindrical epithelial cell in the innermost layer of the enamal organ. Their functions include contribution to the development of the dentinoenamel junction by the deposition of a layer of the matrix, thus producing the foundation for the prisms (the structural units of the dental enamal), and production of the matrix for the enamel prisms and interprismatic substance. (From Jablonski's Dictionary of Dentistry, 1992)." [CL:curator] xref: CL:0000059 relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0009029 name: odontoblast xref: CL:0000060 relationship: develops_from TAO:0009003 ! cranial neural crest cell relationship: OBO_REL:part_of TAO:0005141 ! tooth pulp [Term] id: TAO:0009030 name: cementoblast xref: CL:0000061 is_a: TAO:0009000 ! cell [Term] id: TAO:0009031 name: osteoblast def: "A bone-forming cell which secretes an extracellular matrix. Hydroxyapatite crystals are then deposited into the matrix to form bone." [CL:curator] xref: CL:0000062 relationship: develops_from TAO:0009003 ! cranial neural crest cell relationship: develops_from TAO:0009184 ! osteoprogenitor cell [Term] id: TAO:0009032 name: ciliated cell xref: CL:0000064 is_a: TAO:0009000 ! cell [Term] id: TAO:0009033 name: ependymal cell def: "A neurectoderm derived cell that lines the neural lumen." [CL:curator] synonym: "ependymocyte" EXACT [] xref: CL:0000065 is_a: TAO:0009035 ! ciliated epithelial cell relationship: develops_from TAO:0009306 ! neuroepithelial cell [Term] id: TAO:0009034 name: epithelial cell def: "A cell that is usually found in a two-dimensional sheet with a free surface." [CL:curator] xref: CL:0000066 is_a: TAO:0009000 ! cell [Term] id: TAO:0009035 name: ciliated epithelial cell xref: CL:0000067 is_a: TAO:0009032 ! ciliated cell is_a: TAO:0009038 ! columnar/cuboidal epithelial cell [Term] id: TAO:0009036 name: blood vessel endothelial cell xref: CL:0000071 is_a: TAO:0009039 ! squamous epithelial cell is_a: TAO:0009065 ! endothelial cell relationship: develops_from TAO:0000041 ! mesoderm relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009037 name: barrier epithelial cell xref: CL:0000073 is_a: TAO:0009000 ! cell [Term] id: TAO:0009038 name: columnar/cuboidal epithelial cell xref: CL:0000075 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009039 name: squamous epithelial cell xref: CL:0000076 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009040 name: mesothelial cell xref: CL:0000077 is_a: TAO:0009039 ! squamous epithelial cell is_a: TAO:0009130 ! lining cell relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009041 name: peridermal cell xref: CL:0000078 is_a: TAO:0009039 ! squamous epithelial cell [Term] id: TAO:0009042 name: stratified epithelial cell xref: CL:0000079 relationship: develops_from TAO:0009180 ! stratified epithelial stem cell [Term] id: TAO:0009043 name: circulating cell def: "A cell which moves among different tissues of the body, via blood, lymph, or other medium." [CL:curator] xref: CL:0000080 is_a: TAO:0009000 ! cell [Term] id: TAO:0009044 name: blood cell def: "A cell found predominately in the blood." [CL:curator] xref: CL:0000081 is_a: TAO:0009043 ! circulating cell [Term] id: TAO:0009045 name: epithelial cell of pancreas xref: CL:0000083 relationship: develops_from TAO:0009139 ! endodermal cell [Term] id: TAO:0009046 name: T cell def: "A type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] synonym: "T lymphocyte" EXACT [] synonym: "T-cell" EXACT [] synonym: "T-lymphocyte" EXACT [] xref: CL:0000084 is_a: TAO:0009250 ! lymphocyte relationship: develops_from TAO:0009350 ! pro-T cell [Term] id: TAO:0009047 name: osteoclast def: "A specialized phagocytic cell associated with the absorption and removal of bone." [ZFIN:ZDB-PUB-070221-3] comment: Osteoclasts develop directly from monocytes. synonym: "chondroclast" EXACT [] xref: CL:0000092 relationship: develops_from TAO:0009265 ! monocyte [Term] id: TAO:0009048 name: granulocyte def: "A leukocyte with abundant granules in the cytoplasm." [CL:curator] xref: CL:0000094 is_a: TAO:0009326 ! myeloid leukocyte [Term] id: TAO:0009049 name: mature neutrophil def: "A fully differentiated neutrophil, a granular leukocyte having a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [CL:curator] synonym: "mature neutrocyte" EXACT [] synonym: "mature neutrophil leucocyte" EXACT [] synonym: "mature neutrophil leukocyte" EXACT [] synonym: "mature neutrophilic leucocyte" EXACT [] synonym: "mature neutrophilic leukocyte" EXACT [] synonym: "neutrophil" EXACT [] synonym: "PMN" EXACT [] synonym: "poly" EXACT [] synonym: "polymorphonuclear leucocyte" EXACT [] synonym: "polymorphonuclear leukocyte" EXACT [] synonym: "polymorphonuclear neutrophil" EXACT [] synonym: "polynuclear neutrophilic leucocyte" EXACT [] synonym: "polynuclear neutrophilic leukocyte" EXACT [] xref: CL:0000096 is_a: TAO:0009327 ! neutrophil relationship: develops_from TAO:0009254 ! band form neutrophil relationship: develops_from TAO:0009328 ! immature neutrophil [Term] id: TAO:0009050 name: sensory epithelial cell xref: CL:0000098 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from TAO:0009306 ! neuroepithelial cell [Term] id: TAO:0009051 name: interneuron def: "Most generally any neuron which is not motor or sensory. Interneurons may also refer to neurons whose axons remain within a particular brain region as contrasted with projection neurons which have axons projecting to other brain regions." [CL:curator] xref: CL:0000099 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009052 name: motor neuron def: "A neuron which activate muscle cells." [CL:curator] synonym: "efferent neuron" EXACT [] synonym: "motoneuron" EXACT [] xref: CL:0000100 is_a: TAO:0009239 ! efferent neuron [Term] id: TAO:0009053 name: sensory neuron alt_id: TAO:0000432 xref: CL:0000101 is_a: TAO:0009238 ! afferent neuron relationship: OBO_REL:part_of TAO:0000047 ! peripheral olfactory organ [Term] id: TAO:0009054 name: polymodal neuron xref: CL:0000102 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009055 name: bipolar neuron def: "A type of interneuron that has two neurites, usually an axon and a dendrite, extending from opposite poles of an ovoid cell body." [ZFIN:ZDB-PUB-070221-4] xref: CL:0000103 is_a: TAO:0009051 ! interneuron relationship: OBO_REL:part_of TAO:0000119 ! retinal inner nuclear layer [Term] id: TAO:0009056 name: multipolar neuron xref: CL:0000104 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009057 name: pseudounipolar neuron xref: CL:0000105 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009058 name: unipolar neuron xref: CL:0000106 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009059 name: autonomic neuron xref: CL:0000107 is_a: TAO:0009009 ! neuron neural crest derived is_a: TAO:0009248 ! neuron relationship: OBO_REL:part_of TAO:0001574 ! autonomic nervous system [Term] id: TAO:0009060 name: cholinergic neuron xref: CL:0000108 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009061 name: adrenergic neuron xref: CL:0000109 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009062 name: peptidergic neuron xref: CL:0000110 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009063 name: peripheral neuron xref: CL:0000111 is_a: TAO:0009009 ! neuron neural crest derived is_a: TAO:0009248 ! neuron [Term] id: TAO:0009064 name: mononuclear phagocyte def: "A vertebrate phagocyte with a single nucleus." [ZFIN:ZDB-PUB-070221-3] xref: CL:0000113 is_a: TAO:0009357 ! mononuclear cell [Term] id: TAO:0009065 name: endothelial cell xref: CL:0000115 is_a: TAO:0009130 ! lining cell [Term] id: TAO:0009066 name: pioneer neuron alt_id: TAO:0000409 xref: CL:0000116 is_a: TAO:0009248 ! neuron relationship: OBO_REL:part_of TAO:0000048 ! olfactory placode [Term] id: TAO:0009067 name: CNS neuron (sensu Vertebrata) xref: CL:0000117 is_a: TAO:0009248 ! neuron relationship: develops_from TAO:0009168 ! neuroblast (sensu Vertebrata) [Term] id: TAO:0009068 name: basket cell xref: CL:0000118 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009069 name: Golgi cell xref: CL:0000119 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009070 name: granule cell xref: CL:0000120 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009071 name: Purkinje cell def: "The output neuron of the cerebellar cortex." [CL:curator] xref: CL:0000121 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) is_a: TAO:0009239 ! efferent neuron [Term] id: TAO:0009072 name: stellate cell xref: CL:0000122 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009073 name: glial cell alt_id: TAO:0000025 def: "A non-neuronal cell of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Guide neuronal migration during development, and exchange metabolites with neurons." [CL:curator] synonym: "neuroglia" EXACT [] xref: CL:0000125 relationship: develops_from TAO:0009010 ! glioblast relationship: OBO_REL:part_of TAO:0000396 ! nervous system [Term] id: TAO:0009074 name: macroglial cell xref: CL:0000126 is_a: TAO:0009147 ! glial cell (sensu Vertebrata) relationship: develops_from TAO:0009169 ! glioblast (sensu Vertebrata) [Term] id: TAO:0009075 name: astrocyte def: "A class of large neuroglial (macroglial) cells in the central nervous system - the largest and most numerous neuroglial cells in the brain and spinal cord. Astrocytes (from 'star' cells) are irregularly shaped with many long processes, including those with 'end feet' which form the glial (limiting) membrane and directly and indirectly contribute to the blood-brain barrier. They regulate the extracellular ionic and chemical environment, and 'reactive astrocytes' (along with microglia) respond to injury." [CL:curator] xref: CL:0000127 is_a: TAO:0009074 ! macroglial cell [Term] id: TAO:0009076 name: oligodendrocyte def: "A class of large neuroglial (macroglial) cells in the central nervous system. Form the insulating myelin sheath of axons in the central nervous system." [CL:curator] synonym: "oligodendroglia" EXACT [] xref: CL:0000128 is_a: TAO:0009074 ! macroglial cell relationship: develops_from TAO:0009169 ! glioblast (sensu Vertebrata) [Term] id: TAO:0009077 name: microglial cell def: "A small, migratory, phagocytic, interstitial cell of hematopoietic origin found in the central nervous system. Microglial cells are of various forms and may have slender branched processes." [ZFIN:ZDB-PUB-070221-1] synonym: "microglia" EXACT [] xref: CL:0000129 is_a: TAO:0009141 ! macrophage [Term] id: TAO:0009078 name: gut endothelial cell xref: CL:0000131 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell is_a: TAO:0009065 ! endothelial cell relationship: develops_from TAO:0009139 ! endodermal cell [Term] id: TAO:0009079 name: corneal endothelial cell def: "Cell of the single layer of large flattened cells covering the surface of the cornea." [CL:curator] xref: CL:0000132 is_a: TAO:0009039 ! squamous epithelial cell is_a: TAO:0009065 ! endothelial cell relationship: develops_from TAO:0009003 ! cranial neural crest cell [Term] id: TAO:0009080 name: neurectodermal cell synonym: "neurectoderm cell" EXACT [] xref: CL:0000133 relationship: develops_from TAO:0009137 ! ectodermal cell [Term] id: TAO:0009081 name: mesenchymal cell def: "A cell that normally gives rise to other cells that are organized as three-dimensional masses, rather than sheets." [CL:curator] xref: CL:0000134 relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009082 name: fat cell def: "A fat-storing cell found mostly in the abdominal cavity and subcutaneous tissue of mammals. Fat is usually stored in the form of tryglycerides." [CL:curator] synonym: "adipocyte" EXACT [] synonym: "lipocyte" EXACT [] xref: CL:0000136 relationship: develops_from TAO:0009026 ! fibroblast relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009083 name: osteocyte def: "A mature osteoblast that has become embedded in the bone matrix. They occupy a small cavity, called lacuna, in the matrix and are connected to adjacent osteocytes via protoplasmic projections called canaliculi." [CL:curator] xref: CL:0000137 relationship: develops_from TAO:0009031 ! osteoblast [Term] id: TAO:0009084 name: chondrocyte def: "Polymorphic cell that form cartilage." [CL:curator] xref: CL:0000138 is_a: TAO:0009093 ! GAG secreting cell is_a: TAO:0009287 ! collagen secreting cell relationship: develops_from TAO:0009027 ! chondroblast [Term] id: TAO:0009085 name: amelocyte xref: CL:0000139 is_a: TAO:0009089 ! simple columnar epithelial cell relationship: develops_from TAO:0009028 ! ameloblast [Term] id: TAO:0009086 name: odontocyte xref: CL:0000140 relationship: develops_from TAO:0009029 ! odontoblast relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009087 name: cementocyte xref: CL:0000141 relationship: develops_from TAO:0009030 ! cementoblast relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009088 name: professional antigen presenting cell def: "A cell capable of processing and presenting lipid and protein antigens to T cells in order to initiate an immune response." [ZFIN:ZDB-PUB-070221-3] comment: Note change of name; nearly all somatic cells can present antigens to T cells via MHC Class I complexes leading to effector responses, but professional antigen presenting cells constituitively express MHC Class II as well as constimulatory molecules, and thus can initiate immune responses via T cells. synonym: "APC" EXACT [] xref: CL:0000145 is_a: TAO:0009309 ! leukocyte [Term] id: TAO:0009089 name: simple columnar epithelial cell xref: CL:0000146 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell [Term] id: TAO:0009090 name: pigment cell alt_id: TAO:0000057 synonym: "chromatocyte" EXACT [] synonym: "chromatophore" EXACT [] xref: CL:0000147 is_a: TAO:0009000 ! cell relationship: OBO_REL:part_of TAO:0000368 ! integument [Term] id: TAO:0009091 name: melanocyte alt_id: TAO:0001091 def: "A pigment cell derived from the neural crest. Contains melanin-filled pigment granules, which gives a brown to black appearance." [CL:curator] synonym: "melanophore" EXACT [] xref: CL:0000148 is_a: TAO:0009090 ! pigment cell relationship: develops_from TAO:0009249 ! melanoblast [Term] id: TAO:0009092 name: exocrine cell def: "A cell of an exocrine gland, i.e. a gland that discharges its secretion via a duct." [ZFIN:ZDB-PUB-070221-5] xref: CL:0000152 is_a: TAO:0009000 ! cell [Term] id: TAO:0009093 name: GAG secreting cell synonym: "hyaluronic acid secreting cell" EXACT [] xref: CL:0000153 is_a: TAO:0009162 ! extracellular matrix secreting cell [Term] id: TAO:0009094 name: goblet cell def: "A cell of the epithelial lining that produce and secrete mucins." [CL:curator] synonym: "chalice cell" EXACT [] xref: CL:0000160 is_a: TAO:0009159 ! mucus secreting cell [Term] id: TAO:0009095 name: acid secreting cell xref: CL:0000161 is_a: TAO:0009000 ! cell [Term] id: TAO:0009096 name: endocrine cell def: "A cell of an endocrine gland, ductless glands that secrete substances which are released directly into the circulation and which influence metabolism and other body functions." [CL:curator] xref: CL:0000163 is_a: TAO:0009000 ! cell relationship: OBO_REL:part_of TAO:0001158 ! endocrine system [Term] id: TAO:0009097 name: enteroendocrine cell xref: CL:0000164 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009098 name: neuroendocrine cell def: "A neuron that has the specialized function to produce and secrete hormones, and that constitutes, in whole or in part, an endocrine organ or system." [CL:curator] synonym: "neurosecretory cell" EXACT [] xref: CL:0000165 is_a: TAO:0009096 ! endocrine cell is_a: TAO:0009190 ! electrically responsive cell [Term] id: TAO:0009099 name: chromaffin cell def: "A cell that stores epinephrine secretory vesicles. During times of stress, the nervous system signals the vesicles to secrete their hormonal content. Their name derives from their ability to stain a brownish color with chromic salts. Characteristically, they are located in the adrenal medulla and paraganglia of the sympathetic nervous system." [CL:curator] synonym: "phaeochromocyte" EXACT [] xref: CL:0000166 is_a: TAO:0009098 ! neuroendocrine cell relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0009100 name: peptide hormone secreting cell xref: CL:0000167 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009101 name: insulin secreting cell xref: CL:0000168 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009102 name: pancreatic B cell synonym: "beta cell" EXACT [] xref: CL:0000169 is_a: TAO:0009101 ! insulin secreting cell [Term] id: TAO:0009103 name: glucagon secreting cell xref: CL:0000170 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009104 name: pancreatic A cell synonym: "alpha cell" EXACT [] xref: CL:0000171 is_a: TAO:0009103 ! glucagon secreting cell [Term] id: TAO:0009105 name: somatostatin secreting cell xref: CL:0000172 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009106 name: steroid hormone secreting cell xref: CL:0000174 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009107 name: testosterone secreting cell xref: CL:0000177 is_a: TAO:0009106 ! steroid hormone secreting cell [Term] id: TAO:0009108 name: Leydig cell synonym: "interstitial cell" EXACT [] xref: CL:0000178 is_a: TAO:0009107 ! testosterone secreting cell [Term] id: TAO:0009109 name: progesterone secreting cell xref: CL:0000179 is_a: TAO:0009106 ! steroid hormone secreting cell [Term] id: TAO:0009110 name: estradiol secreting cell xref: CL:0000180 is_a: TAO:0009106 ! steroid hormone secreting cell [Term] id: TAO:0009111 name: hepatocyte def: "The main structural component of the liver. They are specialized epithelial cells that are organized into interconnected plates called lobules." [CL:curator] xref: CL:0000182 is_a: TAO:0009034 ! epithelial cell relationship: develops_from TAO:0009081 ! mesenchymal cell relationship: develops_from TAO:0009139 ! endodermal cell [Term] id: TAO:0009112 name: pericyte def: "A slender, contractile, mesenchymal-like cell found in close association with capillary walls. They are relatively undifferentiated and may become fibroblasts, macrophages, or smooth muscle cells. (From Stedman, 26th ed)." [CL:curator] xref: CL:0000184 is_a: TAO:0009000 ! cell [Term] id: TAO:0009113 name: myoepithelial cell xref: CL:0000185 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009114 name: muscle cell def: "A mature contractile cell, commonly known as a myocyte, that forms one of three kinds of muscle." [CL:curator] synonym: "myocyte" EXACT [] xref: CL:0000187 is_a: TAO:0009190 ! electrically responsive cell relationship: develops_from TAO:0009025 ! myoblast [Term] id: TAO:0009115 name: skeletal muscle cell synonym: "striated muscle cell" EXACT [] xref: CL:0000188 is_a: TAO:0009114 ! muscle cell relationship: develops_from TAO:0009236 ! skeletal muscle myoblast [Term] id: TAO:0009116 name: slow muscle cell alt_id: TAO:0001087 synonym: "red muscle cell" EXACT [] xref: CL:0000189 is_a: TAO:0009115 ! skeletal muscle cell relationship: develops_from TAO:0001056 ! myotome relationship: develops_from TAO:0001373 ! migratory slow muscle precursor cell relationship: develops_from TAO:0009368 ! slow muscle myoblast [Term] id: TAO:0009117 name: fast muscle cell alt_id: TAO:0001088 synonym: "white muscle cell" EXACT [] xref: CL:0000190 is_a: TAO:0009115 ! skeletal muscle cell relationship: develops_from TAO:0001056 ! myotome relationship: develops_from TAO:0009369 ! fast muscle myoblast [Term] id: TAO:0009118 name: smooth muscle cell def: "A non-striated, elongated, spindle-shaped cell found lining the digestive tract, uterus, and blood vessels. They develop from specialized myoblasts (smooth muscle myoblast)." [CL:curator] synonym: "non-striated muscle cell" EXACT [] xref: CL:0000192 is_a: TAO:0009114 ! muscle cell [Term] id: TAO:0009119 name: pain receptor cell def: "The peripheral receptor for pain. Includes receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli. All mammalian nociceptors are free nerve endings." [CL:curator] synonym: "nociceptor" EXACT [] synonym: "nocireceptor" EXACT [] xref: CL:0000198 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009120 name: mechanoreceptor cell def: "A cell specialized to transduce mechanical stimuli and relay that information centrally in the nervous system." [CL:curator] xref: CL:0000199 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009121 name: auditory receptor cell xref: CL:0000201 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009123 name: thermoreceptor cell def: "A cellular receptor which mediates the sense of temperature. Thermoreceptors in vertebrates are mostly located under the skin. In mammals there are separate types of thermoreceptors for cold and for warmth and pain receptor cells which detect cold or heat extreme enough to cause pain." [CL:curator] xref: CL:0000205 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009124 name: chemoreceptor cell def: "A cell specialized to detect chemical substances and relay that information centrally in the nervous system. Chemoreceptors may monitor external stimuli, as in taste and olfaction, or internal stimuli, such as the concentrations of oxygen and carbon dioxide in the blood." [CL:curator] xref: CL:0000206 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009125 name: olfactory receptor cell synonym: "olfactory receptor neuron" EXACT [] synonym: "olfactory sensory neuron" EXACT [] synonym: "Schultze's cell" EXACT [] xref: CL:0000207 is_a: TAO:0009124 ! chemoreceptor cell [Term] id: TAO:0009126 name: taste receptor cell xref: CL:0000209 is_a: TAO:0009124 ! chemoreceptor cell [Term] id: TAO:0009127 name: photoreceptor cell def: "A cell specialized to detect and transduce light." [CL:curator] xref: CL:0000210 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009128 name: electrically active cell def: "A cell whose function is determined by the generation or the reception of an electric signal." [CL:curator] xref: CL:0000211 is_a: TAO:0009000 ! cell [Term] id: TAO:0009129 name: absorptive cell def: "A cell that takes up stuff and metabolises it." [CL:curator] xref: CL:0000212 is_a: TAO:0009000 ! cell [Term] id: TAO:0009130 name: lining cell def: "A cell within an epithelial cell sheet whose main function is to act as an internal or external covering for a tissue or an organism." [CL:curator] synonym: "boundary cell" EXACT [] xref: CL:0000213 is_a: TAO:0009132 ! barrier cell [Term] id: TAO:0009131 name: synovial cell xref: CL:0000214 is_a: TAO:0009093 ! GAG secreting cell is_a: TAO:0009130 ! lining cell relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009132 name: barrier cell def: "A cell whose primary function is to prevent the transport of stuff across compartments." [CL:curator] xref: CL:0000215 is_a: TAO:0009000 ! cell [Term] id: TAO:0009133 name: Sertoli cell def: "A supporting cell projecting inward from the basement membrane of seminiferous tubules. They surround and nourish the developing male germ cells and secrete androgen binding protein. Their tight junctions with the spermatogonia and spermatocytes provide a blood-testis barrier." [CL:curator] xref: CL:0000216 is_a: TAO:0009132 ! barrier cell [Term] id: TAO:0009134 name: insulating cell xref: CL:0000217 is_a: TAO:0009132 ! barrier cell [Term] id: TAO:0009135 name: Schwann cell def: "A neuroglial cell of the peripheral nervous system which forms the insulating myelin sheaths of peripheral axons." [CL:curator] xref: CL:0000218 is_a: TAO:0009134 ! insulating cell is_a: TAO:0009147 ! glial cell (sensu Vertebrata) is_a: TAO:0009163 ! myelin accumulating cell [Term] id: TAO:0009136 name: motile cell def: "A cell that moves by its own activities." [CL:curator] xref: CL:0000219 is_a: TAO:0009000 ! cell [Term] id: TAO:0009137 name: ectodermal cell def: "A cell of the outer of the three germ layers of the embryo." [CL:curator] synonym: "ectoderm cell" EXACT [] xref: CL:0000221 is_a: TAO:0009000 ! cell [Term] id: TAO:0009138 name: mesodermal cell def: "A cell of the middle germ layer of the embryo." [CL:curator] synonym: "mesoblast" EXACT [] synonym: "mesoderm cell" EXACT [] xref: CL:0000222 is_a: TAO:0009000 ! cell [Term] id: TAO:0009139 name: endodermal cell def: "A cell of the inner of the three germ layers of the embryo." [CL:curator] synonym: "endoderm cell" EXACT [] xref: CL:0000223 is_a: TAO:0009000 ! cell [Term] id: TAO:0009140 name: phagocyte def: "Any cell capable of ingesting particulate matter via phagocytosis." [ZFIN:ZDB-PUB-070221-1] xref: CL:0000234 is_a: TAO:0009136 ! motile cell [Term] id: TAO:0009141 name: macrophage def: "A mononuclear phagocyte which differentiates from monocytes, is typically resident in a particular tissue, and capable of phagocytosing a variety of extracellular particulate material, including immune complexes, microorganisms, and dead cells." [CL:curator] synonym: "histiocyte" EXACT [] xref: CL:0000235 is_a: TAO:0009064 ! mononuclear phagocyte is_a: TAO:0009088 ! professional antigen presenting cell relationship: develops_from TAO:0009265 ! monocyte relationship: OBO_REL:part_of TAO:0001159 ! immune system [Term] id: TAO:0009142 name: B cell def: "A type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex." [ZFIN:ZDB-PUB-070221-3] synonym: "B lymphocyte" EXACT [] synonym: "B-cell" EXACT [] synonym: "B-lymphocyte" EXACT [] xref: CL:0000236 is_a: TAO:0009250 ! lymphocyte relationship: develops_from TAO:0009349 ! pro-B cell [Term] id: TAO:0009143 name: brush border epithelial cell xref: CL:0000239 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell [Term] id: TAO:0009144 name: stratified squamous epithelial cell xref: CL:0000240 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009145 name: stratified cuboidal epithelial cell xref: CL:0000241 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009146 name: Merkel cell def: "A modified epidermal cell located in the stratum basale. They are found mostly in areas where sensory perception is acute, such as the fingertips. Merkel cells are closely associated with an expanded terminal bulb of an afferent myelinated nerve fiber." [CL:curator] xref: CL:0000242 is_a: TAO:0009000 ! cell [Term] id: TAO:0009147 name: glial cell (sensu Vertebrata) def: "A non-neuronal cells of the nervous system. They not only provide physical support, but also respond to injury, regulate the ionic and chemical composition of the extracellular milieu. Form the myelin insulation of nervous pathways, guide neuronal migration during development, and exchange metabolites with neurons. Neuroglia have high-affinity transmitter uptake systems, voltage-dependent and transmitter-gated ion channels, and can release transmitters, but their role in signaling (as in many other functions) is unclear." [CL:curator] xref: CL:0000243 is_a: TAO:0009073 ! glial cell relationship: develops_from TAO:0009169 ! glioblast (sensu Vertebrata) [Term] id: TAO:0009148 name: transitional epithelial cell xref: CL:0000244 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009149 name: Mauthner neuron alt_id: TAO:0000087 alt_id: TAO:0000613 xref: CL:0000246 is_a: TAO:0009051 ! interneuron relationship: OBO_REL:part_of TAO:0000545 ! medulla oblongata relationship: OBO_REL:part_of TAO:0001032 ! rhombomere 4 [Term] id: TAO:0009150 name: Rohon-Beard neuron alt_id: TAO:0000002 synonym: "RB neuron" EXACT [] synonym: "Rohon-Beard neurons" EXACT PLURAL [] xref: CL:0000247 is_a: TAO:0009000 ! cell [Term] id: TAO:0009151 name: hatching gland cell xref: CL:0000249 is_a: TAO:0009000 ! cell [Term] id: TAO:0009152 name: extramedullary cell xref: CL:0000251 is_a: TAO:0009053 ! sensory neuron [Term] id: TAO:0009153 name: eurydendroid cell xref: CL:0000253 is_a: TAO:0009239 ! efferent neuron [Term] id: TAO:0009154 name: eye photoreceptor cell xref: CL:0000287 is_a: TAO:0009127 ! photoreceptor cell relationship: OBO_REL:part_of TAO:0000143 ! retinal photoreceptor layer relationship: OBO_REL:part_of TAO:0001464 ! retinal outer nuclear layer [Term] id: TAO:0009155 name: somatotropin secreting cell def: "An acidophilic cell of the anterior pituitary that produces growth hormone, somatotropin." [CL:curator] synonym: "growth hormone secreting cell" EXACT [] synonym: "somatotrope" EXACT [] synonym: "somatotroph" EXACT [] synonym: "somatotrophin secreting cell" EXACT [] synonym: "somatotropic cell" EXACT [] synonym: "somatrophic cell" EXACT [] xref: CL:0000295 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009156 name: gamete xref: CL:0000300 is_a: TAO:0009016 ! germ line cell [Term] id: TAO:0009157 name: keratin accumulating cell xref: CL:0000311 is_a: TAO:0009000 ! cell [Term] id: TAO:0009158 name: keratinocyte def: "An epidermal cell which synthesizes keratin and undergoes a characteristic change as it move upward from the basal layers of the epidermis to the cornified (horny) layer of the skin. Successive stages of differentiation of the keratinocytes forming the epidermal layers are basal cell, spinous or prickle cell, and the granular cell." [CL:curator] xref: CL:0000312 is_a: TAO:0009157 ! keratin accumulating cell [Term] id: TAO:0009159 name: mucus secreting cell alt_id: TAO:0000129 synonym: "mucous cell" EXACT [] xref: CL:0000319 is_a: TAO:0009000 ! cell relationship: OBO_REL:part_of TAO:0000368 ! integument relationship: OBO_REL:part_of TAO:0001159 ! immune system [Term] id: TAO:0009160 name: seminal fluid secreting cell xref: CL:0000321 is_a: TAO:0009000 ! cell [Term] id: TAO:0009161 name: metanephric mesenchyme stem cell xref: CL:0000324 is_a: TAO:0009020 ! multi fate stem cell relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009162 name: extracellular matrix secreting cell xref: CL:0000327 is_a: TAO:0009226 ! stromal cell [Term] id: TAO:0009163 name: myelin accumulating cell xref: CL:0000328 is_a: TAO:0009000 ! cell [Term] id: TAO:0009164 name: oxygen accumulating cell xref: CL:0000329 is_a: TAO:0009000 ! cell [Term] id: TAO:0009165 name: neural crest cell def: "A cell of the strip of specialized ectoderm flanking each side of the embryonal neural plate, which after the closure of the neural tube, forms a column of isolated cells along the dorsal aspect of the neural tube. Most of the cranial and all of the spinal sensory ganglion cells arise by differentiation of neural crest cells." [CL:curator] xref: CL:0000333 is_a: TAO:0009136 ! motile cell relationship: develops_from TAO:0009080 ! neurectodermal cell relationship: OBO_REL:part_of TAO:0000045 ! neural crest [Term] id: TAO:0009166 name: mesenchyme condensation cell xref: CL:0000335 relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009167 name: adrenal medulla cell synonym: "chromafin cell" EXACT [] xref: CL:0000336 relationship: develops_from TAO:0009004 ! trunk neural crest cell [Term] id: TAO:0009168 name: neuroblast (sensu Vertebrata) synonym: "neuroblast" EXACT [] xref: CL:0000337 is_a: TAO:0009011 ! neuroblast [Term] id: TAO:0009169 name: glioblast (sensu Vertebrata) xref: CL:0000339 is_a: TAO:0009010 ! glioblast [Term] id: TAO:0009170 name: pigment cell (sensu Vertebrata) xref: CL:0000342 is_a: TAO:0009090 ! pigment cell [Term] id: TAO:0009171 name: visual pigment cell (sensu Vertebrata) xref: CL:0000343 is_a: TAO:0009170 ! pigment cell (sensu Vertebrata) [Term] id: TAO:0009172 name: non-visual cell (sensu Vertebrata) xref: CL:0000344 is_a: TAO:0009170 ! pigment cell (sensu Vertebrata) [Term] id: TAO:0009173 name: dental papilla cell xref: CL:0000345 relationship: develops_from TAO:0009003 ! cranial neural crest cell [Term] id: TAO:0009174 name: scleral cell xref: CL:0000347 relationship: develops_from TAO:0009003 ! cranial neural crest cell [Term] id: TAO:0009175 name: choroidal cell xref: CL:0000348 relationship: develops_from TAO:0009003 ! cranial neural crest cell [Term] id: TAO:0009176 name: extraembryonic cell xref: CL:0000349 is_a: TAO:0009000 ! cell [Term] id: TAO:0009177 name: blastoderm cell def: "An undifferentiated cell produced by early cleavages of the fertilized egg (zygote)." [CL:curator] synonym: "blastomere" EXACT [] xref: CL:0000353 is_a: TAO:0009002 ! early embryonic cell [Term] id: TAO:0009178 name: blastemal cell xref: CL:0000354 is_a: TAO:0009020 ! multi fate stem cell [Term] id: TAO:0009179 name: muscle stem cell xref: CL:0000355 is_a: TAO:0009013 ! single fate stem cell is_a: TAO:0009291 ! muscle precursor cell [Term] id: TAO:0009180 name: stratified epithelial stem cell xref: CL:0000357 is_a: TAO:0009000 ! cell [Term] id: TAO:0009181 name: vascular associated smooth muscle cell xref: CL:0000359 is_a: TAO:0009118 ! smooth muscle cell [Term] id: TAO:0009182 name: gastrula cell def: "A cell of the embryo in the early stage following the blastula, characterized by morphogenetic cell movements, cell differentiation, and the formation of the three germ layers." [CL:curator] xref: CL:0000361 is_a: TAO:0009002 ! early embryonic cell [Term] id: TAO:0009183 name: epidermal cell def: "A cell found in the outermost layer of the organism." [CL:curator] xref: CL:0000362 is_a: TAO:0009039 ! squamous epithelial cell [Term] id: TAO:0009184 name: osteoprogenitor cell xref: CL:0000375 is_a: TAO:0009013 ! single fate stem cell relationship: develops_from TAO:0009166 ! mesenchyme condensation cell [Term] id: TAO:0009185 name: sensory processing neuron xref: CL:0000379 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009186 name: neurosecretory neuron xref: CL:0000381 is_a: TAO:0009239 ! efferent neuron [Term] id: TAO:0009187 name: nephrogenic mesenchyme stem cell xref: CL:0000383 is_a: TAO:0009020 ! multi fate stem cell relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009188 name: ligament cell xref: CL:0000384 is_a: TAO:0009000 ! cell [Term] id: TAO:0009189 name: tendon cell synonym: "muscle attachment cell" EXACT [] xref: CL:0000388 is_a: TAO:0009000 ! cell [Term] id: TAO:0009190 name: electrically responsive cell def: "A cell whose function is determined by its response to an electric signal." [CL:curator] xref: CL:0000393 is_a: TAO:0009128 ! electrically active cell [Term] id: TAO:0009191 name: CNS interneuron xref: CL:0000402 is_a: TAO:0009051 ! interneuron is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009193 name: electrically signaling cell def: "A cell that initiates an electrical signal and passes that signal to another cell." [CL:curator] xref: CL:0000404 is_a: TAO:0009128 ! electrically active cell [Term] id: TAO:0009194 name: CNS short range interneuron xref: CL:0000406 is_a: TAO:0009191 ! CNS interneuron [Term] id: TAO:0009195 name: CNS long range interneuron xref: CL:0000410 is_a: TAO:0009191 ! CNS interneuron [Term] id: TAO:0009196 name: hypodermal cell xref: CL:0000411 is_a: TAO:0009039 ! squamous epithelial cell [Term] id: TAO:0009197 name: yolk cell xref: CL:0000428 is_a: TAO:0009000 ! cell [Term] id: TAO:0009198 name: xanthophore alt_id: TAO:0001092 def: "A pigment cell derived from the neural crest. Contains cartenoid pigments in structures called pterinosomes or xanthosomes. This gives an appearance ranging from a golden yellow to orange and red." [CL:curator] xref: CL:0000430 is_a: TAO:0009090 ! pigment cell [Term] id: TAO:0009199 name: iridophore alt_id: TAO:0001090 def: "A pigment cell derived from the neural crest. The cell contains flat light-reflecting platelets, probably of guanine, in stacks called reflecting platets or iridisomes. The color-generating components produce a silver, gold, or iridescent color." [CL:curator] xref: CL:0000431 is_a: TAO:0009090 ! pigment cell [Term] id: TAO:0009200 name: reticular cell xref: CL:0000432 is_a: TAO:0009026 ! fibroblast [Term] id: TAO:0009201 name: alkali secreting cell xref: CL:0000435 is_a: TAO:0009000 ! cell [Term] id: TAO:0009202 name: follicle stimulating hormone secreting cell synonym: "delta basophil" EXACT [] synonym: "gonadotroph" EXACT [] xref: CL:0000437 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009203 name: luteinizing hormone secreting cell synonym: "delta basophila" EXACT [] synonym: "gonadotroph" EXACT [] xref: CL:0000438 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009204 name: prolactin secreting cell def: "An acidophilic cell of the anterior pituitary that produces prolactin." [CL:curator] synonym: "epsilon-acidophil" EXACT [] synonym: "lactotrope" EXACT [] synonym: "lactotroph" EXACT [] synonym: "lactotropic cell" EXACT [] synonym: "mammotrope" EXACT [] synonym: "mammotroph" EXACT [] synonym: "mammotrophic cell" EXACT [] synonym: "mammotropic cell" EXACT [] xref: CL:0000439 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009205 name: melanocyte stimulating hormone secreting cell def: "A cell of the intermediate pituitary that produces melanocyte stimulating hormone." [CL:curator] synonym: "melanotrope" EXACT [] synonym: "melanotroph" EXACT [] xref: CL:0000440 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009206 name: calcitonin secreting cell xref: CL:0000443 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009207 name: parathyroid hormone secreting cell synonym: "chief cell" EXACT [] xref: CL:0000446 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009208 name: lipocyte xref: CL:0000450 is_a: TAO:0009082 ! fat cell [Term] id: TAO:0009209 name: dendritic cell def: "A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation." [ZFIN:ZDB-PUB-070221-3] synonym: "interdigitating cell" EXACT [] synonym: "veiled cell" EXACT [] xref: CL:0000451 is_a: TAO:0009088 ! professional antigen presenting cell [Term] id: TAO:0009210 name: thyroid hormone secreting cell xref: CL:0000452 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009211 name: epinephrin secreting cell xref: CL:0000454 is_a: TAO:0009212 ! biogenic amine secreting cell [Term] id: TAO:0009212 name: biogenic amine secreting cell xref: CL:0000457 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009213 name: serotonin secreting cell synonym: "serotin secreting cell" EXACT [] xref: CL:0000458 is_a: TAO:0009212 ! biogenic amine secreting cell [Term] id: TAO:0009214 name: norepinephrin secreting cell xref: CL:0000459 is_a: TAO:0009212 ! biogenic amine secreting cell [Term] id: TAO:0009215 name: glucocorticoid secreting cell xref: CL:0000460 is_a: TAO:0009106 ! steroid hormone secreting cell [Term] id: TAO:0009216 name: adrenocorticotropic hormone secreting cell def: "A basophil cell of the anterior pituitary that produces adrenocorticotropic hormone, or corticotropin." [CL:curator] synonym: "adrenocorticotrophic hormone secreting cell" EXACT [] synonym: "corticotrope" EXACT [] synonym: "corticotroph" EXACT [] synonym: "corticotrophin hormone secreting cell" EXACT [] synonym: "corticotropin hormone secreting cell" EXACT [] xref: CL:0000467 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009217 name: digestive enzyme secreting cell xref: CL:0000470 is_a: TAO:0009000 ! cell [Term] id: TAO:0009218 name: thyroid stimulating hormone secreting cell def: "A basophil cell of the anterior pituitary that produces thyroid stimulating hormone, thyrotrophin." [CL:curator] synonym: "beta-basophil" EXACT [] synonym: "thyrotrope" EXACT [] synonym: "thyrotroph" EXACT [] xref: CL:0000476 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009219 name: visible light photoreceptor cell xref: CL:0000488 is_a: TAO:0009127 ! photoreceptor cell [Term] id: TAO:0009220 name: photopic photoreceptor cell xref: CL:0000490 is_a: TAO:0009219 ! visible light photoreceptor cell [Term] id: TAO:0009221 name: UV sensitive photoreceptor cell xref: CL:0000494 is_a: TAO:0009127 ! photoreceptor cell [Term] id: TAO:0009222 name: blue sensitive photoreceptor cell xref: CL:0000495 is_a: TAO:0009220 ! photopic photoreceptor cell [Term] id: TAO:0009223 name: green sensitive photoreceptor cell xref: CL:0000496 is_a: TAO:0009220 ! photopic photoreceptor cell [Term] id: TAO:0009224 name: red sensitive photoreceptor cell xref: CL:0000497 is_a: TAO:0009220 ! photopic photoreceptor cell [Term] id: TAO:0009225 name: inhibitory interneuron xref: CL:0000498 is_a: TAO:0009051 ! interneuron [Term] id: TAO:0009226 name: stromal cell def: "A connective tissue cell of an organ found in the loose connective tissue. These are most often associated with the uterine mucosa and the ovary as well as the hematopoietic system and elsewhere." [CL:curator] xref: CL:0000499 relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009227 name: granulosa cell def: "A supporting cell for the developing female gamete in the ovary of mammals. They develop from the coelomic epithelial cells of the gonadal ridge. Granulosa cells form a single layer around the mammalian oocyte in the primordial ovarian follicle and advance to form a multilayered cumulus oophorus surrounding the ovum in the Graafian follicle. The major functions of granulosa cells include the production of steroids and LH receptors." [CL:curator] xref: CL:0000501 is_a: TAO:0009106 ! steroid hormone secreting cell [Term] id: TAO:0009228 name: D cell def: "A cell found throughout the gastrointestinal tract and in the pancreas. They secrete somatostatin in both an endocrine and paracrine manner. Somatostatin inhibits gastrin, cholecystokinin, insulin, glucagon, pancreatic enzymes, and gastric hydrochloric acid. A variety of substances which inhibit gastric acid secretion (vasoactive intestinal peptide, calcitonin gene-EXACT peptide, cholecystokinin, beta-adrenergic agonists, and gastric inhibitory peptide) are thought to act by releasing somatostatin." [CL:curator] xref: CL:0000502 is_a: TAO:0009097 ! enteroendocrine cell is_a: TAO:0009105 ! somatostatin secreting cell [Term] id: TAO:0009229 name: theca cell def: "A flattened stroma cell forming a sheath or theca outside the basal lamina lining the mature ovarian follicle. Thecal interstitial or stromal cells are steroidogenic, and produce primarily androgens which serve as precusors of estrogens in the granulosa cells." [CL:curator] xref: CL:0000503 is_a: TAO:0009226 ! stromal cell is_a: TAO:0009271 ! androgen secreting cell [Term] id: TAO:0009230 name: substance P secreting cell xref: CL:0000505 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009231 name: enkephalin secreting cell xref: CL:0000506 is_a: TAO:0009232 ! endorphin secreting cell [Term] id: TAO:0009232 name: endorphin secreting cell xref: CL:0000507 is_a: TAO:0009100 ! peptide hormone secreting cell [Term] id: TAO:0009233 name: paracrine cell xref: CL:0000512 is_a: TAO:0009000 ! cell [Term] id: TAO:0009234 name: cardiac muscle myoblast def: "A precursor cell destined to differentiate into cardiac myocytes." [CL:curator] synonym: "cardioblast" EXACT [] xref: CL:0000513 is_a: TAO:0009025 ! myoblast [Term] id: TAO:0009235 name: smooth muscle myoblast def: "A precursor cell destined to differentiate into smooth muscle myocytes." [CL:curator] synonym: "satellite cell" EXACT [] xref: CL:0000514 is_a: TAO:0009025 ! myoblast [Term] id: TAO:0009236 name: skeletal muscle myoblast def: "A myoblast that differentiates into skeletal muscle fibers." [CL:curator] xref: CL:0000515 is_a: TAO:0009025 ! myoblast [Term] id: TAO:0009237 name: perineuronal satellite cell def: "A non-neuronal cell that surrounds the neuronal cell bodies of the ganglia." [CL:curator] synonym: "perineural satellite cell" EXACT [] xref: CL:0000516 is_a: TAO:0009147 ! glial cell (sensu Vertebrata) relationship: develops_from TAO:0009169 ! glioblast (sensu Vertebrata) [Term] id: TAO:0009238 name: afferent neuron def: "A neuron which conveys sensory information centrally from the periphery." [CL:curator] synonym: "input neuron" EXACT [] xref: CL:0000526 is_a: TAO:0009009 ! neuron neural crest derived is_a: TAO:0009248 ! neuron [Term] id: TAO:0009239 name: efferent neuron def: "A neuron which sends impulses peripherally to activate muscles or secretory cells." [CL:curator] synonym: "output neuron" EXACT [] xref: CL:0000527 is_a: TAO:0009009 ! neuron neural crest derived is_a: TAO:0009248 ! neuron [Term] id: TAO:0009240 name: nitrergic neuron def: "A nerve cell where transmission is mediated by nitric oxide." [CL:curator] xref: CL:0000528 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009241 name: pigmented epithelial cell xref: CL:0000529 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from TAO:0009306 ! neuroepithelial cell [Term] id: TAO:0009242 name: primary neuron alt_id: TAO:0000055 xref: CL:0000530 is_a: TAO:0009248 ! neuron relationship: OBO_REL:part_of TAO:0001120 ! neuroectoderm [Term] id: TAO:0009243 name: CAP motoneuron xref: CL:0000532 is_a: TAO:0009244 ! primary motor neuron [Term] id: TAO:0009244 name: primary motor neuron alt_id: TAO:0000572 synonym: "primary motoneuron" EXACT [] xref: CL:0000533 is_a: TAO:0009052 ! motor neuron is_a: TAO:0009242 ! primary neuron [Term] id: TAO:0009245 name: primary interneuron alt_id: TAO:0000945 xref: CL:0000534 is_a: TAO:0009051 ! interneuron is_a: TAO:0009242 ! primary neuron [Term] id: TAO:0009246 name: secondary neuron xref: CL:0000535 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009247 name: secondary motor neuron alt_id: TAO:0000584 synonym: "secondary motoneuron" EXACT [] xref: CL:0000536 is_a: TAO:0009052 ! motor neuron is_a: TAO:0009246 ! secondary neuron [Term] id: TAO:0009248 name: neuron alt_id: TAO:0000134 def: "The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [CL:curator] xref: CL:0000540 is_a: TAO:0009190 ! electrically responsive cell is_a: TAO:0009193 ! electrically signaling cell relationship: develops_from TAO:0009011 ! neuroblast relationship: OBO_REL:part_of TAO:0000396 ! nervous system [Term] id: TAO:0009249 name: melanoblast def: "A cell that originates from the neural crest and differentiates into a pigment cell." [CL:curator] xref: CL:0000541 relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0009250 name: lymphocyte def: "A cell of the B cell, T cell, or natural killer cell lineage." [ZFIN:ZDB-PUB-070221-3] xref: CL:0000542 is_a: TAO:0009357 ! mononuclear cell relationship: develops_from TAO:0009023 ! common lymphocyte progenitor [Term] id: TAO:0009251 name: granulocyte monocyte progenitor cell def: "A progenitor cell committed to the granulocyte and monocyte lineages. http://www.copewithcytokines.de" [ZFIN:ZDB-PUB-070221-1] synonym: "CFU-C , Colony forming unit in culture" EXACT [] synonym: "CFU-GM" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "colony forming unit granulocyte macrophage" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "GMP" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "granulocyte-macrophage progenitor" EXACT [ZFIN:ZDB-PUB-070221-1] synonym: "myeloid progenitor cell" EXACT [] xref: CL:0000557 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009021 ! common myeloid progenitor [Term] id: TAO:0009252 name: reticulocyte def: "An immature erythrocyte showing a basophilic reticulum under vital staining." [ZFIN:ZDB-PUB-070221-1] xref: CL:0000558 is_a: TAO:0009044 ! blood cell is_a: TAO:0009325 ! erythroid lineage cell [Term] id: TAO:0009253 name: promonocyte def: "A precursor in the monocytic series, being a cell intermediate in development between the monoblast and monocyte." [ZFIN:ZDB-PUB-070221-1] xref: CL:0000559 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009017 ! monoblast [Term] id: TAO:0009254 name: band form neutrophil def: "A late neutrophilic metamyelocyte in which the nucleus is in the form of a curved or coiled band, not having acquired the typical multilobar shape of the mature neutrophil." [ZFIN:ZDB-PUB-070221-1] synonym: "band" EXACT [] synonym: "band cell" EXACT [] synonym: "band form" EXACT [] synonym: "rod neutrophil" EXACT [] synonym: "stab cell" EXACT [] xref: CL:0000560 is_a: TAO:0009328 ! immature neutrophil relationship: develops_from TAO:0009268 ! neutrophilic metamyelocyte [Term] id: TAO:0009255 name: amacrine cell def: "Interneuron of the vertebrate retina. They integrate, modulate, and interpose a temporal domain in the visual message presented to the retinal ganglion cells, with which they synapse in the inner plexiform layer." [CL:curator] synonym: "amacrine neuron" EXACT [] xref: CL:0000561 is_a: TAO:0009051 ! interneuron relationship: OBO_REL:part_of TAO:0000119 ! retinal inner nuclear layer [Term] id: TAO:0009256 name: nucleate erythrocyte def: "An erythrocyte having a nucleus." [CL:curator] synonym: "RBC" EXACT [] synonym: "red blood cell" EXACT [] xref: CL:0000562 is_a: TAO:0009000 ! cell [Term] id: TAO:0009257 name: neutrophilic promyelocyte def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a myeloblast and myelocyte, and containing a few, as yet undifferentiated, cytoplasmic granules." [ZFIN:ZDB-PUB-070221-1] synonym: "neutrophilic premyelocyte" EXACT [] synonym: "neutrophilic progranulocyte" EXACT [] synonym: "promyelocyte" EXACT [] xref: CL:0000564 relationship: develops_from TAO:0009018 ! neutrophilic myeloblast [Term] id: TAO:0009258 name: angioblastic mesenchymal cell synonym: "angioblast" EXACT [] xref: CL:0000566 is_a: TAO:0009020 ! multi fate stem cell relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009259 name: cardiac mesenchymal cell xref: CL:0000569 relationship: develops_from TAO:0009004 ! trunk neural crest cell relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009260 name: parafollicular cell synonym: "C cell" EXACT [] xref: CL:0000570 relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0009261 name: leucophore def: "A pigment cell derived from the neural crest. Contains uric acid or other purine crystals deposited in stacks called leucosomes. The crystals reflect light and this gives a white appearance under white light." [CL:curator] xref: CL:0000571 is_a: TAO:0009090 ! pigment cell [Term] id: TAO:0009262 name: retinal cone cell def: "One of the two photoreceptor cell types in the vertebrate retina. In cones the photopigment is in invaginations of the cell membrane of the outer segment. Cones are less sensitive to light than rods, but they provide vision with higher spatial and temporal acuity, and the combination of signals from cones with different pigments allows color vision." [CL:curator] xref: CL:0000573 is_a: TAO:0009154 ! eye photoreceptor cell [Term] id: TAO:0009263 name: erythrophore def: "A pigment cell derived from the neural crest. Contains pteridine and/or carotenoid pigments in structures called pterinosomes or erythrosomes. This gives an orange to red appearance." [CL:curator] xref: CL:0000574 is_a: TAO:0009090 ! pigment cell [Term] id: TAO:0009264 name: corneal epithelial cell xref: CL:0000575 is_a: TAO:0009039 ! squamous epithelial cell [Term] id: TAO:0009265 name: monocyte def: "Large, phagocytic mononuclear leukocytes produced in the vertebrate bone marrow and released into the blood." [CL:curator] xref: CL:0000576 is_a: TAO:0009064 ! mononuclear phagocyte is_a: TAO:0009088 ! professional antigen presenting cell relationship: develops_from TAO:0009253 ! promonocyte [Term] id: TAO:0009266 name: neutrophilic myelocyte def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a promyelocyte and a metamyelocyte; in this stage, differentiation of cytoplasmic granules has begun." [ZFIN:ZDB-PUB-070221-1] xref: CL:0000580 is_a: TAO:0009328 ! immature neutrophil relationship: develops_from TAO:0009257 ! neutrophilic promyelocyte [Term] id: TAO:0009267 name: peritoneal macrophage def: "A mononuclear phagocyte that develops from bone marrow precursors but is resident in the peritoneum." [CL:curator] xref: CL:0000581 is_a: TAO:0009141 ! macrophage [Term] id: TAO:0009268 name: neutrophilic metamyelocyte def: "A neutrophil precursor in the granulocytic series, being a cell intermediate in development between a meylocyte and the band form neutrophil. The protein synthesis seen in earlier stages decreases or stops; the nucleus becomes indented and its chromatin becomes coarse and clumped; and the cytoplasm becomes pink like that of a mature granulocyte." [ZFIN:ZDB-PUB-070221-1] synonym: "juvenile neutrophil" EXACT [] synonym: "metamyelocyte" EXACT [] xref: CL:0000582 is_a: TAO:0009328 ! immature neutrophil relationship: develops_from TAO:0009266 ! neutrophilic myelocyte [Term] id: TAO:0009269 name: enterocyte xref: CL:0000584 is_a: TAO:0009143 ! brush border epithelial cell [Term] id: TAO:0009270 name: odontoclast def: "A specialized phagocytic cell associated with the absorption and removal of cementum." [CL:curator] xref: CL:0000588 is_a: TAO:0009047 ! osteoclast [Term] id: TAO:0009271 name: androgen secreting cell xref: CL:0000593 is_a: TAO:0009106 ! steroid hormone secreting cell [Term] id: TAO:0009272 name: skeletal muscle satellite cell def: "An elongated, spindle-shaped, quiescent myoblast lying in close contact with adult skeletal muscle. They are thought to play a role in muscle repair and regeneration." [CL:curator] xref: CL:0000594 is_a: TAO:0009236 ! skeletal muscle myoblast [Term] id: TAO:0009273 name: pyramidal cell def: "A projection neuron in the cerebral cortex and the hippocampus. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region." [CL:curator] xref: CL:0000598 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009274 name: pressoreceptor cell def: "A receptor in the vascular system, particularly the aorta and carotid sinus, which is sensitive to stretch of the vessel walls." [CL:curator] xref: CL:0000602 is_a: TAO:0009370 ! stretch receptor cell [Term] id: TAO:0009275 name: retinal rod cell def: "One of the two photoreceptor cell types of the vertebrate retina. In rods the photopigment is in stacks of membranous disks separate from the outer cell membrane. Rods are more sensitive to light than cones, but rod mediated vision has less spatial and temporal resolution than cone vision." [CL:curator] xref: CL:0000604 is_a: TAO:0009154 ! eye photoreceptor cell [Term] id: TAO:0009276 name: GABAergic neuron xref: CL:0000617 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009277 name: acinar cell xref: CL:0000622 is_a: TAO:0009000 ! cell [Term] id: TAO:0009278 name: natural killer cell def: "A natural killer cell is a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [ZFIN:ZDB-PUB-070221-3] synonym: "large granular lymphocyte" EXACT [] synonym: "NK cell" EXACT [] synonym: "null cell" EXACT [] xref: CL:0000623 is_a: TAO:0009250 ! lymphocyte relationship: develops_from TAO:0009348 ! natural killer cell progenitor [Term] id: TAO:0009279 name: ito cell synonym: "perisinusoidal cell" EXACT [] xref: CL:0000632 is_a: TAO:0009162 ! extracellular matrix secreting cell [Term] id: TAO:0009280 name: Muller cell xref: CL:0000636 is_a: TAO:0009075 ! astrocyte relationship: OBO_REL:part_of TAO:0000119 ! retinal inner nuclear layer [Term] id: TAO:0009281 name: folliculostellate cell def: "A supportive cell of the vertebrate pituitary that provides macromolecular transport and secretes hormones." [CL:curator] xref: CL:0000642 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009282 name: Bergmann glial cell xref: CL:0000644 is_a: TAO:0009075 ! astrocyte [Term] id: TAO:0009283 name: mesangial cell xref: CL:0000650 relationship: develops_from TAO:0009081 ! mesenchymal cell [Term] id: TAO:0009284 name: pinealocyte xref: CL:0000652 is_a: TAO:0009096 ! endocrine cell [Term] id: TAO:0009285 name: podocyte xref: CL:0000653 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009286 name: fenestrated cell synonym: "window cell" EXACT [] xref: CL:0000666 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009287 name: collagen secreting cell xref: CL:0000667 is_a: TAO:0009162 ! extracellular matrix secreting cell [Term] id: TAO:0009288 name: primordial germ cell alt_id: TAO:0000065 xref: CL:0000670 is_a: TAO:0009016 ! germ line cell is_a: TAO:0009136 ! motile cell relationship: OBO_REL:part_of TAO:0000632 ! reproductive system [Term] id: TAO:0009289 name: gut absorptive cell def: "Cell of the intestinal epithelium with a brush border made up of many parallel packed microvilli; associated with absorption, particularly of macromolecules." [CL:curator] xref: CL:0000677 is_a: TAO:0009129 ! absorptive cell [Term] id: TAO:0009290 name: glutamatergic neuron xref: CL:0000679 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009291 name: muscle precursor cell xref: CL:0000680 relationship: develops_from TAO:0000041 ! mesoderm relationship: develops_from TAO:0009138 ! mesodermal cell [Term] id: TAO:0009292 name: radial glial cell def: "A transient cell present only in the developing CNS. Functions as both a precursor cell and as a scaffold to support neuronal migration." [CL:curator] xref: CL:0000681 is_a: TAO:0009168 ! neuroblast (sensu Vertebrata) relationship: develops_from TAO:0001120 ! neuroectoderm relationship: develops_from TAO:0009306 ! neuroepithelial cell [Term] id: TAO:0009293 name: M cell def: "An absorptive cell of the mammalian gut epithelium that endocytoses microorganisms and intact macromolecules from the gut lumen and transports them to the subepithelial space where they are presented to antigen-presenting cells and lymphocytes." [CL:curator] xref: CL:0000682 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009294 name: ependymoglial cell def: "A cell that transports hormones from neurosecretory cells." [CL:curator] xref: CL:0000683 is_a: TAO:0009075 ! astrocyte [Term] id: TAO:0009295 name: cerebrospinal fluid secreting cell xref: CL:0000686 is_a: TAO:0009038 ! columnar/cuboidal epithelial cell relationship: develops_from TAO:0009165 ! neural crest cell [Term] id: TAO:0009296 name: perijunctional fibroblast def: "A fibroblast-like cell that provides support at neuromuscular junctions in vertebrates and are localized outside the synaptic basal lamina." [CL:curator] xref: CL:0000688 is_a: TAO:0009026 ! fibroblast [Term] id: TAO:0009297 name: stellate interneuron xref: CL:0000691 is_a: TAO:0009051 ! interneuron [Term] id: TAO:0009298 name: terminal Schwann cell def: "A neuroglial cell of the peripheral nervous system inside the basal lamina of the neuromuscular junction providing chemical and physical support to the synapse." [CL:curator] xref: CL:0000692 relationship: develops_from TAO:0009073 ! glial cell [Term] id: TAO:0009299 name: neuroglioform cell def: "A stellate interneuron having 7-10 dendrites that may branch." [CL:curator] synonym: "spiderweb cell" EXACT [] xref: CL:0000693 is_a: TAO:0009297 ! stellate interneuron [Term] id: TAO:0009300 name: Cajal-Retzius cell def: "One of a transient population of pioneering neurons in the cerebral cortex. These cells are slender bipolar cells of the developing marginal zone. One feature of these cells in mammals is that they express the Reelin gene." [CL:curator] xref: CL:0000695 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) [Term] id: TAO:0009301 name: dopaminergic neuron def: "A neuron that releases dopamine as a neurotransmitter." [CL:curator] xref: CL:0000700 is_a: TAO:0009059 ! autonomic neuron [Term] id: TAO:0009302 name: sustentacular cell def: "Cell that provides some or all mechanical, nutritional and phagocytic support to their neighbors." [CL:curator] xref: CL:0000703 is_a: TAO:0009000 ! cell [Term] id: TAO:0009303 name: endothelial tip cell def: "A specialized endothelial cell that senses extracellular signals and guides the directed growth of blood vessels." [CL:curator] xref: CL:0000704 is_a: TAO:0009036 ! blood vessel endothelial cell [Term] id: TAO:0009304 name: choroid plexus epithelial cell def: "Specialized ependymal cell that produces the cerebrospinal fluid from the blood and secretes it into the lumen of the brain and spinal chord." [CL:curator] xref: CL:0000706 is_a: TAO:0009033 ! ependymal cell [Term] id: TAO:0009305 name: leptomemingeal cell def: "Stromal cell that forms the internal covering of the vertebrate brain and produces ECM for this and the choroid plexus." [CL:curator] xref: CL:0000708 is_a: TAO:0009162 ! extracellular matrix secreting cell [Term] id: TAO:0009306 name: neuroepithelial cell xref: CL:0000710 relationship: develops_from TAO:0009080 ! neurectodermal cell [Term] id: TAO:0009307 name: somatic stem cell xref: CL:0000723 is_a: TAO:0009000 ! cell [Term] id: TAO:0009308 name: urothelial cell def: "A cell of a layer of transitional epithelium in the wall of the bladder, ureter, and renal pelvis, external to the lamina propria." [CL:curator] xref: CL:0000731 is_a: TAO:0009034 ! epithelial cell [Term] id: TAO:0009309 name: leukocyte def: "A nucleated cell of the myeloid or lymphoid lineages, found in blood or other tissue." [CL:curator] synonym: "immune cell" EXACT [] synonym: "leucocyte" EXACT [] synonym: "white blood cell" EXACT [] xref: CL:0000738 is_a: TAO:0009043 ! circulating cell is_a: TAO:0009136 ! motile cell relationship: develops_from TAO:0009014 ! hematopoietic stem cell [Term] id: TAO:0009310 name: retinal ganglion cell def: "The set of neurons that receives neural inputs via bipolar, horizontal and amacrine cells. The axons of these cells make up the optic nerve." [CL:curator] synonym: "gangliocyte" EXACT [] synonym: "RGC" EXACT [] xref: CL:0000740 is_a: TAO:0009067 ! CNS neuron (sensu Vertebrata) relationship: OBO_REL:part_of TAO:0000024 ! retinal ganglion cell layer [Term] id: TAO:0009311 name: spinal accessory motor neuron def: "A motor neuron that is located in the cervical region of the spinal cord and selectively innervates the sternocleidmastoid or trapezius muscle. Unlike other motor neurons, they extend axons dorsally along lateral margins of the spinal cord." [CL:curator] synonym: "SACMN" EXACT [] xref: CL:0000741 is_a: TAO:0009052 ! motor neuron [Term] id: TAO:0009312 name: periarticular chondrocyte def: "A round chondrocyte that first differentiates in the late embryonic growth plate of bone." [CL:curator] xref: CL:0000742 is_a: TAO:0009084 ! chondrocyte [Term] id: TAO:0009313 name: hypertrophic chondrocyte def: "A terminally differentiated chondrocyte that differentiates in the late embryonic growth plate of bone." [CL:curator] xref: CL:0000743 is_a: TAO:0009084 ! chondrocyte [Term] id: TAO:0009314 name: columnar chondrocyte def: "A columnar chondrocyte that differentiates in the late embryonic growth plate of bone. Columnar chondrocytes vigorously proliferate and form columns in the growth plate." [CL:curator] xref: CL:0000744 is_a: TAO:0009084 ! chondrocyte [Term] id: TAO:0009315 name: horizontal cell def: "A neuron that laterally connects other neurons in the inner nuclear layer of the retina." [ZFIN:ZDB-PUB-070221-6] xref: CL:0000745 is_a: TAO:0009051 ! interneuron [Term] id: TAO:0009316 name: cardiac muscle cell xref: CL:0000746 is_a: TAO:0009114 ! muscle cell [Term] id: TAO:0009317 name: cyanophore def: "A pigment cell derived from the neural crest. Contains blue pigment of unknown chemical composition in fibrous organelles termed cyanosomes. This gives a blue appearance." [CL:curator] synonym: "blue chromatophore" EXACT [] xref: CL:0000747 is_a: TAO:0009090 ! pigment cell [Term] id: TAO:0009318 name: retinal bipolar neuron def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer." [CL:curator] xref: CL:0000748 is_a: TAO:0009055 ! bipolar neuron [Term] id: TAO:0009319 name: ON-bipolar cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner half of the inner plexiform layer. These cells depolarize in response to light stimulation of their corresponding photoreceptors." [CL:curator] xref: CL:0000749 is_a: TAO:0009318 ! retinal bipolar neuron [Term] id: TAO:0009320 name: OFF-bipolar cell def: "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the outer half of the inner plexiform layer. These cells hyperpolarize in response to light stimulation of their corresponding photoreceptors." [CL:curator] xref: CL:0000750 is_a: TAO:0009318 ! retinal bipolar neuron [Term] id: TAO:0009321 name: rod bipolar cell def: "A bipolar neuron found in the retina and having connections with rod photoreceptor cells and neurons in the inner plexiform layer." [CL:curator] xref: CL:0000751 is_a: TAO:0009318 ! retinal bipolar neuron is_a: TAO:0009319 ! ON-bipolar cell [Term] id: TAO:0009322 name: cone retinal bipolar cell def: "A bipolar neuron found in the retina and having connections with cone photoreceptor cells and neurons in the inner plexiform layer." [CL:curator] xref: CL:0000752 is_a: TAO:0009318 ! retinal bipolar neuron [Term] id: TAO:0009323 name: thrombocyte def: "A nucleated blood cell involved in coagulation, typically seen in birds and other non-mammalian vertebrates." [CL:curator] comment: Note that this is a non-mammalian cell type. Use platelet ; CL:0000233 for thrombocytes (platelets) in mammals. xref: CL:0000762 is_a: TAO:0009044 ! blood cell is_a: TAO:0009324 ! myeloid cell relationship: develops_from TAO:0009351 ! thromboblast [Term] id: TAO:0009324 name: myeloid cell def: "A cell of the monocyte, granulocyte, mast cell, megakaryocyte, or erythroid lineage." [CL:curator] xref: CL:0000763 is_a: TAO:0009043 ! circulating cell relationship: develops_from TAO:0009021 ! common myeloid progenitor [Term] id: TAO:0009325 name: erythroid lineage cell def: "A immature or mature cell in the lineage leading to and including erythrocytes." [CL:curator] xref: CL:0000764 is_a: TAO:0009324 ! myeloid cell [Term] id: TAO:0009326 name: myeloid leukocyte def: "A cell of the monocyte, granulocyte, or mast cell lineage." [CL:curator] xref: CL:0000766 is_a: TAO:0009309 ! leukocyte is_a: TAO:0009324 ! myeloid cell relationship: develops_from TAO:0009021 ! common myeloid progenitor [Term] id: TAO:0009327 name: neutrophil def: "Any of the immature or mature forms of a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [ZFIN:ZDB-PUB-070221-1] synonym: "neutrocyte" EXACT [] synonym: "neutrophil leucocyte" EXACT [] synonym: "neutrophil leukocyte" EXACT [] synonym: "neutrophilic leucocyte" EXACT [] synonym: "neutrophilic leukocyte" EXACT [] synonym: "PMN" EXACT [] synonym: "poly" EXACT [] synonym: "polymorphonuclear leucocyte" EXACT [] synonym: "polymorphonuclear leukocyte" EXACT [] synonym: "polymorphonuclear neutrophil" EXACT [] synonym: "polynuclear neutrophilic leucocyte" EXACT [] synonym: "polynuclear neutrophilic leukocyte" EXACT [] xref: CL:0000775 is_a: TAO:0009048 ! granulocyte [Term] id: TAO:0009328 name: immature neutrophil def: "Any of the immature forms of a neutrophil in which neutrophilic specific granules are present but other phenotypic features of the mature form may be lacking. A neutrophil is a granular leukocyte that in its mature form has a nucleus with three to five lobes connected by slender threads of chromatin, and cytoplasm containing fine inconspicuous granules and stainable by neutral dyes." [ZFIN:ZDB-PUB-070221-1] synonym: "immatuer neutrophilic leukocyte" EXACT [] synonym: "immature neutrocyte" EXACT [] synonym: "immature neutrophil leucocyte" EXACT [] synonym: "immature neutrophil leukocyte" EXACT [] synonym: "immature neutrophilic leucocyte" EXACT [] xref: CL:0000776 is_a: TAO:0009327 ! neutrophil relationship: develops_from TAO:0009257 ! neutrophilic promyelocyte [Term] id: TAO:0009329 name: mononuclear osteoclast def: "A specialized mononuclear phagocytic cell associated with the absorption and removal of bone." [CL:curator] xref: CL:0000778 is_a: TAO:0009047 ! osteoclast is_a: TAO:0009064 ! mononuclear phagocyte [Term] id: TAO:0009330 name: mononuclear odontoclast def: "A specialized multinuclear phagocytic cell associated with the absorption and removal of cementum." [CL:curator] xref: CL:0000781 is_a: TAO:0009270 ! odontoclast is_a: TAO:0009329 ! mononuclear osteoclast [Term] id: TAO:0009331 name: mature B cell def: "A mature form of a B cell, a type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex." [ZFIN:ZDB-PUB-070221-3] synonym: "mature B lymphocyte" EXACT [] synonym: "mature B-cell" EXACT [] synonym: "mature B-lymphocyte" EXACT [] xref: CL:0000785 is_a: TAO:0009088 ! professional antigen presenting cell is_a: TAO:0009142 ! B cell relationship: develops_from TAO:0009343 ! immature B cell relationship: develops_from TAO:0009345 ! transitional stage B cell [Term] id: TAO:0009332 name: plasma cell def: "A terminally differentiated, post-mitotic, short-lived cell of the B cell lineage devoted to producing large amounts of immunoglobulin. Plasma cells are oval or round with extensive rough endoplasmic reticulum, a well-developed Golgi apparatus, and a round nucleus having a characteristic cartwheel heterochromatin pattern." [ZFIN:ZDB-PUB-070221-1, ZFIN:ZDB-PUB-070221-3] synonym: "plasmacyte" EXACT [] xref: CL:0000786 is_a: TAO:0009250 ! lymphocyte relationship: develops_from TAO:0009331 ! mature B cell [Term] id: TAO:0009333 name: memory B cell def: "A distinctly differentiated long-lived B cell that is readily activated upon reencounter of its antigenic determinant. Memory B cells differentiate from antigen-activated B cells which have been selected for expression of higher affinity immunoglobulin." [ZFIN:ZDB-PUB-070221-3] synonym: "memory B lymphocyte" EXACT [] synonym: "memory B-cell" EXACT [] synonym: "memory B-lymphocyte" EXACT [] xref: CL:0000787 is_a: TAO:0009142 ! B cell relationship: develops_from TAO:0009331 ! mature B cell [Term] id: TAO:0009334 name: naive B cell def: "A mature B cell which has not yet been activated by antigen." [CL:curator] synonym: "naive B lymphocyte" EXACT [] synonym: "nave B-cell" EXACT [] synonym: "nave B-lymphocyte" EXACT [] xref: CL:0000788 is_a: TAO:0009331 ! mature B cell [Term] id: TAO:0009335 name: alpha-beta T cell def: "An immature or mature T cell expressing an alpha-beta T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] synonym: "alpha-beta T lymphocyte" EXACT [] synonym: "alpha-beta T-cell" EXACT [] synonym: "alpha-beta T-lymphocyte" EXACT [] xref: CL:0000789 is_a: TAO:0009046 ! T cell [Term] id: TAO:0009336 name: gamma-delta T cell def: "An immature or mature T cell expressing an gamma-delta T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "gamma-delta T lymphocyte" EXACT [] synonym: "gamma-delta T-cell" EXACT [] synonym: "gamma-delta T-lymphocyte" EXACT [] xref: CL:0000798 is_a: TAO:0009046 ! T cell relationship: develops_from TAO:0009350 ! pro-T cell [Term] id: TAO:0009337 name: immature gamma-delta T cell def: "An immature T cell expressing an gamma-delta T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] comment: Note that gamma-delta T cell have both thymic and extrathymic differentiation pathways. synonym: "immature gamma-delta T lymphocyte" EXACT [] synonym: "immature gamma-delta T-cell" EXACT [] synonym: "immature gamma-delta T-lymphocyte" EXACT [] xref: CL:0000799 is_a: TAO:0009336 ! gamma-delta T cell is_a: TAO:0009340 ! immature T cell [Term] id: TAO:0009338 name: mature gamma-delta T cell def: "A mature T cell expressing an gamma-delta T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] synonym: "mature gamma-delta T lymphocyte" EXACT [] synonym: "mature gamma-delta T-cell" EXACT [] synonym: "mature gamma-delta T-lymphocyte" EXACT [] xref: CL:0000800 is_a: TAO:0009336 ! gamma-delta T cell is_a: TAO:0009341 ! mature T cell relationship: develops_from TAO:0009337 ! immature gamma-delta T cell [Term] id: TAO:0009339 name: gamma-delta intraepithelial T cell def: "A gamma-delta T cell of the columnar epithelium of the gastrointestinal tract. Intraepithelial T cells often have distinct developmental pathways and activation requirements." [ZFIN:ZDB-PUB-070221-3] synonym: "gamma-delta intraepithelial T lymphocyte" EXACT [] synonym: "gamma-delta intraepithelial T-cell" EXACT [] synonym: "gamma-delta intraepithelial T-lymphocyte" EXACT [] synonym: "IEL" EXACT [] synonym: "intraepithelial lymphocyte" EXACT [] xref: CL:0000801 is_a: TAO:0009338 ! mature gamma-delta T cell [Term] id: TAO:0009340 name: immature T cell def: "An immature form of a T cell, a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] synonym: "immature T lymphocyte" EXACT [] synonym: "immature T-cell" EXACT [] synonym: "immature T-lymphocyte" EXACT [] xref: CL:0000804 is_a: TAO:0009046 ! T cell relationship: develops_from TAO:0009350 ! pro-T cell [Term] id: TAO:0009341 name: mature T cell def: "A mature form of a T cell, a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex." [ZFIN:ZDB-PUB-070221-3] synonym: "mature T lymphocyte" EXACT [] synonym: "mature T-cell" EXACT [] synonym: "mature T-lymphocyte" EXACT [] xref: CL:0000812 is_a: TAO:0009046 ! T cell relationship: develops_from TAO:0009340 ! immature T cell [Term] id: TAO:0009342 name: memory T cell def: "A distinctly differentiated long-lived T cell that is readily activated upon reencounter of its antigenic determinant." [ZFIN:ZDB-PUB-070221-3] synonym: "memory T lymphocyte" EXACT [] synonym: "memory T-cell" EXACT [] synonym: "memory T-lymphocyte" EXACT [] xref: CL:0000813 is_a: TAO:0009046 ! T cell relationship: develops_from TAO:0009341 ! mature T cell [Term] id: TAO:0009343 name: immature B cell def: "A immature form of a B cell, a type of lymphocyte whose defining characteristic is the expression of an immunoglobulin complex." [ZFIN:ZDB-PUB-070221-3] synonym: "immature B lymphocyte" EXACT [] synonym: "immature B-cell" EXACT [] synonym: "immature B-lymphocyte" EXACT [] xref: CL:0000816 is_a: TAO:0009142 ! B cell relationship: develops_from TAO:0009349 ! pro-B cell [Term] id: TAO:0009344 name: pre-B cell def: "A fully committed immature B cell that expresses the pre-B cell receptor." [ZFIN:ZDB-PUB-070221-3] synonym: "pre-B lymphocyte" EXACT [] xref: CL:0000817 is_a: TAO:0009343 ! immature B cell relationship: develops_from TAO:0009349 ! pro-B cell [Term] id: TAO:0009345 name: transitional stage B cell def: "An immature B cell of an intermediate stage between the pre-B cell stage and the mature nave stage. Transitional B cells express surface immunoglobulin, and are subject to the process of B cell selection." [ZFIN:ZDB-PUB-070221-3] synonym: "T1 B cell" EXACT [] synonym: "T2 B cell" EXACT [] synonym: "T3 B cell" EXACT [] synonym: "transitional stage B lymphocyte" EXACT [] synonym: "transitional stage B-cell" EXACT [] synonym: "transitional stage B-lymphocyte" EXACT [] xref: CL:0000818 is_a: TAO:0009343 ! immature B cell relationship: develops_from TAO:0009344 ! pre-B cell [Term] id: TAO:0009346 name: immature natural killer cell def: "An immature form of a natural killer cell, a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells. Immature natural killer cells have begun to express the characteristic natural killer cell activation and inhibitory molecules through a selection process leading to tolerance to normal self cells." [ZFIN:ZDB-PUB-070221-3] synonym: "p-NK" EXACT [] xref: CL:0000823 is_a: TAO:0009278 ! natural killer cell relationship: develops_from TAO:0009348 ! natural killer cell progenitor [Term] id: TAO:0009347 name: mature natural killer cell def: "A mature form of a natural killer cell, a lymphocyte that can spontaneously kill a variety of target cells without prior antigenic activation via germline encoded activation receptors and also regulate immune responses via cytokine release and direct contact with other cells." [ZFIN:ZDB-PUB-070221-3] synonym: "LAK cell" EXACT [] synonym: "lymphokine activated killer cell" EXACT [] xref: CL:0000824 is_a: TAO:0009278 ! natural killer cell relationship: develops_from TAO:0009346 ! immature natural killer cell [Term] id: TAO:0009348 name: natural killer cell progenitor def: "A progenitor committed to the natural killer cell lineage, expressing certain phenotypic markers of the natural killer cell lineage such as the IL-15 receptor, but lacking many of the phenotypic characteristics of later stages of natural killer cell development such as expression of NK activating and inhibitory molecules." [CL:curator] synonym: "NKP" EXACT [] synonym: "null cell" EXACT [] synonym: "preNK cell" EXACT [] xref: CL:0000825 is_a: TAO:0009355 ! lymphoid progenitor cell relationship: develops_from TAO:0009023 ! common lymphocyte progenitor [Term] id: TAO:0009349 name: pro-B cell def: "A progenitor cell of the B cell lineage, with some lineage specific activity such as early stages of recombination of B cell receptor genes, but not yet fully committed to the B cell lineage until the expression of PAX5 occurs." [ZFIN:ZDB-PUB-070221-3] synonym: "pro-B lymphocyte" EXACT [] xref: CL:0000826 is_a: TAO:0009355 ! lymphoid progenitor cell relationship: develops_from TAO:0009023 ! common lymphocyte progenitor [Term] id: TAO:0009350 name: pro-T cell def: "A progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [ZFIN:ZDB-PUB-070221-3] synonym: "DN1 cell" EXACT [] synonym: "DN1 thymocyte" EXACT [] synonym: "pro-T lymphocyte" EXACT [] synonym: "T lymphoblast" EXACT [] synonym: "TN1 cell" EXACT [] xref: CL:0000827 is_a: TAO:0009355 ! lymphoid progenitor cell relationship: develops_from TAO:0009023 ! common lymphocyte progenitor relationship: OBO_REL:part_of TAO:0001078 ! thymus [Term] id: TAO:0009351 name: thromboblast def: "A progenitor cell of the thrombocyte, a nucleated blood cell involved in coagulation typically seen in birds and other non-mammalian vertebrates." [CL:curator] comment: Note that this is a non-mammalian cell type. xref: CL:0000828 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009022 ! megakaryocyte erythroid progenitor cell [Term] id: TAO:0009352 name: neutrophil progenitor cell def: "A progenitor cell of the neutrophil lineage." [ZFIN:ZDB-PUB-070221-1] synonym: "neutrophil stem cell" EXACT [] xref: CL:0000834 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009251 ! granulocyte monocyte progenitor cell [Term] id: TAO:0009353 name: myeloblast def: "The most primitive precursor in the granulocytic series, having fine, evenly distributed chromatin, several nucleoli, and a nongranular basophilic cytoplasm." [ZFIN:ZDB-PUB-070221-1] xref: CL:0000835 is_a: TAO:0009356 ! myeloid progenitor cell relationship: develops_from TAO:0009251 ! granulocyte monocyte progenitor cell [Term] id: TAO:0009354 name: hematopoietic progenitor cell def: "A progenitor cell of any hematopoietic lineage, potentially multipotent." [CL:curator] comment: Note that this is a class of cell types, not an identified single cell type. synonym: "hemopoietic progenitor cell" EXACT [] xref: CL:0000837 relationship: develops_from TAO:0009014 ! hematopoietic stem cell [Term] id: TAO:0009355 name: lymphoid progenitor cell def: "A progenitor cell of any lymphoid lineage, potentially multipotent." [CL:curator] comment: Note that this is a class of cell types, not an identified single cell type. xref: CL:0000838 is_a: TAO:0009354 ! hematopoietic progenitor cell [Term] id: TAO:0009356 name: myeloid progenitor cell def: "A progenitor cell of any myeloid lineage, potentially multipotent." [CL:curator] comment: Note that this is a class of cell types, not an identified single cell type. xref: CL:0000839 is_a: TAO:0009354 ! hematopoietic progenitor cell [Term] id: TAO:0009357 name: mononuclear cell def: "A leukocyte with a single non-segmented nucleus in the mature form." [CL:curator] xref: CL:0000842 is_a: TAO:0009309 ! leukocyte [Term] id: TAO:0009358 name: ciliated olfactory receptor neuron def: "An olfactory receptor cell in which the apical ending of the dendrite is a pronounced ciliated olfactory knob." [ZFIN:ZDB-PUB-060724-7] synonym: "ciliated olfactory sensory neuron" EXACT [] synonym: "ciliated sensory neuron" EXACT [] xref: CL:0000847 is_a: TAO:0009125 ! olfactory receptor cell [Term] id: TAO:0009359 name: microvillous olfactory receptor neuron def: "An olfactory receptor cell in which the apical ending of the dendrite is a knob that bears numerous microvilli." [ZFIN:ZDB-PUB-060724-7] synonym: "microvillous olfactory sensory neuron" EXACT [] synonym: "microvillous sensory neuron" EXACT [] xref: CL:0000848 is_a: TAO:0009125 ! olfactory receptor cell [Term] id: TAO:0009360 name: crypt olfactory receptor neuron def: "An olfactory receptor cell with short cilia growing in an invagination bordered by microvilli." [ZFIN:ZDB-PUB-060724-7] synonym: "crypt cell" EXACT [] synonym: "crypt olfactory sensory neuron" EXACT [] synonym: "crypt sensory neuron" EXACT [] xref: CL:0000849 is_a: TAO:0009125 ! olfactory receptor cell [Term] id: TAO:0009361 name: serotonergic neuron alt_id: TAO:0009192 def: "A neuron that releases serotonin as a neurotransmitter." [CL:curator] synonym: "5-HT neuron" EXACT [] synonym: "5-hydroxytryptamine neuron" EXACT [] synonym: "serotinergic neuron" EXACT [] xref: CL:0000403 xref: CL:0000850 is_a: TAO:0009248 ! neuron [Term] id: TAO:0009362 name: neuromast mantle cell def: "Neuromast mantle cell is a non-sensory cell. Neuromast mantle cells surround the neuromast support cells and neuromast hair cells, separating the neuromast from the epidermis, and secrete cupula in which the ciliary bundles of all the hair cells are embedded." [ZFIN:ZDB-PUB-070221-7] xref: CL:0000851 is_a: TAO:0009000 ! cell [Term] id: TAO:0009363 name: neuromast support cell def: "Neuromast support cell is a non-sensory cell of the neuromast that extend between the sensory hair cells from the basement membrane to the apical surface; neuromast support cells are surrounded by neuromast mantle cells." [ZFIN:ZDB-PUB-070221-7] xref: CL:0000852 is_a: TAO:0009000 ! cell [Term] id: TAO:0009364 name: olfactory epithelial support cell def: "Olfactory epithelial support cell is a non ciliated columnar cell that extends from the epithelial free margin to the basement membrane of the olfactory epithelium." [CL:curator] synonym: "olfactory sustentacular cell" EXACT [] xref: CL:0000853 is_a: TAO:0009000 ! cell [Term] id: TAO:0009365 name: interneuromast cell def: "Interneuromast cell is a neuroectodermal cell deposited by the migrating lateral line primordium between the neuromasts. Interneuromast cells proliferate and migrate to form additional neuromasts." [CL:curator] xref: CL:0000854 is_a: TAO:0009080 ! neurectodermal cell relationship: develops_from TAO:0009012 ! neuroplacodal cell relationship: OBO_REL:part_of TAO:0000034 ! lateral line system [Term] id: TAO:0009366 name: hair cell def: "Hair cell is a mechanoreceptor cell that is sensitive to movement of the hair-like projections (stereocilia and kinocilia) which relay the information centrally in the nervous system." [CL:curator] xref: CL:0000855 is_a: TAO:0009120 ! mechanoreceptor cell [Term] id: TAO:0009367 name: neuromast hair cell def: "Neuromast hair cell is a hair cell that acts as a sensory receptor of the neuromast; it is morphologically polarized as a result of the relative position of the single kinocilium and the clusters of stereocilia on its apical surface." [CL:curator] xref: CL:0000856 is_a: TAO:0009366 ! hair cell relationship: OBO_REL:part_of TAO:0000243 ! neuromast [Term] id: TAO:0009368 name: slow muscle myoblast def: "A skeletal muscle myoblast that differentiates into slow muscle fibers." [CL:curator] xref: CL:0000857 is_a: TAO:0009236 ! skeletal muscle myoblast [Term] id: TAO:0009369 name: fast muscle myoblast def: "A skeletal muscle myoblast that differentiates into fast muscle fibers." [CL:curator] xref: CL:0000858 is_a: TAO:0009236 ! skeletal muscle myoblast [Term] id: TAO:0009370 name: stretch receptor cell xref: CL:1000082 is_a: TAO:0009001 ! receptor cell (sensu Animalia) [Term] id: TAO:0009371 name: stratified keratinized epithelial stem cell xref: CL:1000083 is_a: TAO:0009180 ! stratified epithelial stem cell [Term] id: TAO:0100000 name: teleost anatomical entity [Typedef] id: develops_from name: develops from is_transitive: true [Typedef] id: homologous_to name: homologous_to def: "Instance 3-ary relation; continuant x in taxon A is homologous to continuant y in taxon B when both are genealogical descended from [the same entity] in their most common ancestor taxon C." [TAO:Curator] is_symmetric: true [Typedef] id: OBO_REL:part_of name: part of is_reflexive: true is_transitive: true is_anti_symmetric: true [Typedef] id: overlaps name: overlaps def: "X overlaps Y =def. for every t and every x, if x instance_of X at t, then there is some instance y of Y at t such that (x overlaps y at t)\n\nwhere\n\nx overlaps y at t =def there is some z such that z is part_of x at t and z part_of y at t." [TAO:pem] comment: Appears to be symmetric at the instance level, but may not be at the class level, though we don't have a good example of this yet. xref: RO:overlaps